Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28622.t1 | RHN49106.1 | 88.6 | 402 | 18 | 4 | 6 | 386 | 20 | 414 | 7.10E-208 | 733 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28622.t1 | Q9SFF6 | 67.6 | 367 | 99 | 3 | 40 | 387 | 50 | 415 | 2.1e-152 | 540.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28622.t1 | G7KVG4 | 88.3 | 403 | 19 | 4 | 6 | 387 | 20 | 415 | 5.1e-208 | 733.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050825 | MS.gene28622 | 0.92759 | 9.51E-92 | -1.69E-46 |
| MS.gene055765 | MS.gene28622 | -0.806678 | 7.32E-50 | -1.69E-46 |
| MS.gene05985 | MS.gene28622 | 0.806124 | 9.58E-50 | -1.69E-46 |
| MS.gene059901 | MS.gene28622 | 0.834857 | 2.35E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 93 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTTTGGAGGATCTGAATT+TGG | 0.129041 | 7.2:-4660347 | None:intergenic |
| ACATTTCACTTTGGTAGATT+TGG | 0.239311 | 7.2:-4659538 | None:intergenic |
| TTGCGATTGCCGTTGGAAAT+TGG | 0.247498 | 7.2:+4660895 | MS.gene28622:CDS |
| TCATGTAGAACTGATATATC+TGG | 0.286074 | 7.2:+4659672 | MS.gene28622:intron |
| AATGCGGGGCTAGACTTTCT+TGG | 0.319923 | 7.2:-4660263 | None:intergenic |
| AATTTAGAGGACAGAAAATA+TGG | 0.324688 | 7.2:+4659317 | MS.gene28622:CDS |
| CTCACTTGAAGACCAGATTA+TGG | 0.340475 | 7.2:-4660977 | None:intergenic |
| GCTGCACAGCTTCAATTTAG+AGG | 0.354360 | 7.2:+4659304 | MS.gene28622:CDS |
| AATCAGAAAATTACCGAAGT+TGG | 0.357974 | 7.2:-4659915 | None:intergenic |
| ACTTTGGAGGATCTGAATTT+GGG | 0.360290 | 7.2:-4660346 | None:intergenic |
| GCACACATTGAGGATCTCTT+TGG | 0.363001 | 7.2:+4659698 | MS.gene28622:CDS |
| ATCCCACTCACTCTCATTCA+TGG | 0.363631 | 7.2:+4657869 | MS.gene28622:CDS |
| TACCACTTCCATCCCGGATC+TGG | 0.372412 | 7.2:+4658296 | MS.gene28622:CDS |
| ATAATGTTTGTCAGTATGTT+TGG | 0.373579 | 7.2:+4658256 | MS.gene28622:intron |
| TTCCATCCCGGATCTGGATC+TGG | 0.382531 | 7.2:+4658302 | MS.gene28622:CDS |
| TCTCTCACCTCGGGATATCT+TGG | 0.388144 | 7.2:+4657772 | MS.gene28622:CDS |
| TCATGAGAGGTTGAGGCAGC+AGG | 0.395767 | 7.2:-4657847 | None:intergenic |
| ACAAGAATTTATGAATAATC+CGG | 0.416697 | 7.2:-4660522 | None:intergenic |
| TGACAATACCTGCCATAATC+TGG | 0.417076 | 7.2:+4660965 | MS.gene28622:CDS |
| CAGCAGATCCTCATGGATCT+TGG | 0.417631 | 7.2:+4660286 | MS.gene28622:CDS |
| GTAGATTTGGAAACAAGCTT+TGG | 0.422770 | 7.2:-4659525 | None:intergenic |
| TTTCCAACGGCAATCGCAAT+TGG | 0.423077 | 7.2:-4660891 | None:intergenic |
| TCATGCATACCATGTTGTTA+AGG | 0.424811 | 7.2:-4660601 | None:intergenic |
| TGGATGCTCTGCGGGTGGTC+TGG | 0.427319 | 7.2:+4659477 | MS.gene28622:CDS |
| TCCAATATGGAAAACCTTGT+TGG | 0.438519 | 7.2:-4659383 | None:intergenic |
| ATCAGAAAATTACCGAAGTT+GGG | 0.457711 | 7.2:-4659914 | None:intergenic |
| CGATGTCGTTTCAGTTCCAT+TGG | 0.458197 | 7.2:+4657799 | MS.gene28622:CDS |
| AAATAGTTGGCTCATTCAAT+TGG | 0.461267 | 7.2:+4658328 | MS.gene28622:CDS |
| CATGAGGATCTGCTGAATGC+GGG | 0.468931 | 7.2:-4660278 | None:intergenic |
| TTGCTCAATAATCCAGTGAA+TGG | 0.470456 | 7.2:-4658572 | None:intergenic |
| CATGTAGAACTGATATATCT+GGG | 0.473034 | 7.2:+4659673 | MS.gene28622:intron |
| CAGCCAATTGCGATTGCCGT+TGG | 0.487578 | 7.2:+4660888 | MS.gene28622:intron |
| CTGGATCTGGTGCAAATAGT+TGG | 0.489001 | 7.2:+4658315 | MS.gene28622:CDS |
| AGGTTGAGGCAGCAGGGGAG+AGG | 0.498501 | 7.2:-4657840 | None:intergenic |
| TCAAAGTGAGGTACTGTGAT+GGG | 0.499780 | 7.2:+4658727 | MS.gene28622:CDS |
| TGTTTGGATGGAACTTTACC+TGG | 0.506783 | 7.2:+4658272 | MS.gene28622:CDS |
| CCTGGTTACCACTTCCATCC+CGG | 0.507770 | 7.2:+4658290 | MS.gene28622:CDS |
| AGTGGGATCATGAGAGGTTG+AGG | 0.515339 | 7.2:-4657854 | None:intergenic |
| GAGTGTCAAAATTACTTTGG+AGG | 0.515481 | 7.2:-4660359 | None:intergenic |
| ATTCATGGAGCTGATTCAAA+AGG | 0.519185 | 7.2:+4657884 | MS.gene28622:CDS |
| ATTATGGCAGGTATTGTCAC+AGG | 0.520288 | 7.2:-4660961 | None:intergenic |
| ATTTGCACCAGATCCAGATC+CGG | 0.521168 | 7.2:-4658309 | None:intergenic |
| CACATTGAGGATCTCTTTGG+AGG | 0.522515 | 7.2:+4659701 | MS.gene28622:CDS |
| GGAGCTGATTCAAAAGGAGC+AGG | 0.529067 | 7.2:+4657890 | MS.gene28622:CDS |
| AATAAAGCTGAAGAAAATCC+TGG | 0.530795 | 7.2:+4658593 | MS.gene28622:CDS |
| CCGGGATGGAAGTGGTAACC+AGG | 0.532137 | 7.2:-4658290 | None:intergenic |
| CATGAGAGGTTGAGGCAGCA+GGG | 0.533233 | 7.2:-4657846 | None:intergenic |
| TAGTTGGCTCATTCAATTGG+AGG | 0.533513 | 7.2:+4658331 | MS.gene28622:CDS |
| TCTAAAGACACAAGTTCTGA+TGG | 0.539378 | 7.2:-4658504 | None:intergenic |
| ATCCAGATCCGGGATGGAAG+TGG | 0.540621 | 7.2:-4658298 | None:intergenic |
| ACGCGGTTCCTCAAAATACA+TGG | 0.548149 | 7.2:+4658538 | MS.gene28622:CDS |
| CTTGAAGACCAGATTATGGC+AGG | 0.552753 | 7.2:-4660973 | None:intergenic |
| TTTGCACCAGATCCAGATCC+GGG | 0.553031 | 7.2:-4658308 | None:intergenic |
| TGTGATGGGGCGTCTTTCAG+TGG | 0.553061 | 7.2:+4658741 | MS.gene28622:CDS |
| ATGAGAGGTTGAGGCAGCAG+GGG | 0.553504 | 7.2:-4657845 | None:intergenic |
| TGCATACCATGTTGTTAAGG+AGG | 0.557052 | 7.2:-4660598 | None:intergenic |
| GACACAGAATCTCTCACCTC+GGG | 0.557126 | 7.2:+4657763 | MS.gene28622:CDS |
| GCATACCATGTTGTTAAGGA+GGG | 0.557350 | 7.2:-4660597 | None:intergenic |
| CACCAGATCCAGATCCGGGA+TGG | 0.559180 | 7.2:-4658304 | None:intergenic |
| TGTTTGTCAGTATGTTTGGA+TGG | 0.563064 | 7.2:+4658260 | MS.gene28622:intron |
| AAATTACCGAAGTTGGGTCC+AGG | 0.563109 | 7.2:-4659908 | None:intergenic |
| CCGCATTCAGCAGATCCTCA+TGG | 0.567304 | 7.2:+4660279 | MS.gene28622:CDS |
| TGCAGCTTATGATGCATGGC+AGG | 0.576179 | 7.2:+4660068 | MS.gene28622:CDS |
| ATGTATCTTGTCTCTCCGAT+TGG | 0.579548 | 7.2:-4660556 | None:intergenic |
| ATTGAAGAATTAATGTCGAA+GGG | 0.581479 | 7.2:+4659349 | MS.gene28622:CDS |
| TAACCACCTGGACCCAACTT+CGG | 0.583326 | 7.2:+4659902 | MS.gene28622:CDS |
| CTCTCCCCTCCTTAACAACA+TGG | 0.586154 | 7.2:+4660592 | MS.gene28622:CDS |
| AATTGAAGAATTAATGTCGA+AGG | 0.586251 | 7.2:+4659348 | MS.gene28622:CDS |
| GCTCCATGAATGAGAGTGAG+TGG | 0.593083 | 7.2:-4657872 | None:intergenic |
| TTATCTGGATGCTCTGCGGG+TGG | 0.594030 | 7.2:+4659472 | MS.gene28622:CDS |
| CCATGAGGATCTGCTGAATG+CGG | 0.598787 | 7.2:-4660279 | None:intergenic |
| GTCAAAGTGAGGTACTGTGA+TGG | 0.606987 | 7.2:+4658726 | MS.gene28622:CDS |
| TGAATGCAGCTTATGATGCA+TGG | 0.609693 | 7.2:+4660064 | MS.gene28622:CDS |
| CATACCATGTTGTTAAGGAG+GGG | 0.624484 | 7.2:-4660596 | None:intergenic |
| CTCCATGAATGAGAGTGAGT+GGG | 0.626990 | 7.2:-4657871 | None:intergenic |
| ATGAGGATCTGCTGAATGCG+GGG | 0.632595 | 7.2:-4660277 | None:intergenic |
| GGGAATGAAGAACGCCAACA+AGG | 0.633094 | 7.2:+4659369 | MS.gene28622:CDS |
| AGAGTGAGTGGGATCATGAG+AGG | 0.634312 | 7.2:-4657860 | None:intergenic |
| AATCGGAGAGACAAGATACA+TGG | 0.638574 | 7.2:+4660558 | MS.gene28622:CDS |
| GAACGTATATCATCTGCCAA+TGG | 0.639888 | 7.2:-4657815 | None:intergenic |
| ATGTAGAACTGATATATCTG+GGG | 0.646188 | 7.2:+4659674 | MS.gene28622:intron |
| CAAAGTGAGGTACTGTGATG+GGG | 0.646787 | 7.2:+4658728 | MS.gene28622:CDS |
| CAAATGCTAAATGACATCAA+AGG | 0.647217 | 7.2:+4660479 | MS.gene28622:CDS |
| AGACACAGAATCTCTCACCT+CGG | 0.647432 | 7.2:+4657762 | MS.gene28622:CDS |
| TGTAGAACTGATATATCTGG+GGG | 0.648311 | 7.2:+4659675 | MS.gene28622:intron |
| GCTGCATTCAGCAGAAACAG+TGG | 0.652873 | 7.2:-4660051 | None:intergenic |
| TTATGGCAGGTATTGTCACA+GGG | 0.675845 | 7.2:-4660960 | None:intergenic |
| CAATTATTCCAAGATCCATG+AGG | 0.680551 | 7.2:-4660294 | None:intergenic |
| TTACCGAAGTTGGGTCCAGG+TGG | 0.682863 | 7.2:-4659905 | None:intergenic |
| CAGTGGAGACAGTCAAAACG+AGG | 0.693681 | 7.2:+4658758 | MS.gene28622:CDS |
| ACTGGAACAGAGTCAAAGTG+AGG | 0.697951 | 7.2:+4658715 | MS.gene28622:CDS |
| TATGGCAGGTATTGTCACAG+GGG | 0.750427 | 7.2:-4660959 | None:intergenic |
| GTAGAACTGATATATCTGGG+GGG | 0.773485 | 7.2:+4659676 | MS.gene28622:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACTTAGTTAAATTATTCTT+TGG | + | chr7.2:4658883-4658902 | MS.gene28622:intron | 15.0% |
| !! | AAAATCCTCTTAACAAAAAT+TGG | - | chr7.2:4658818-4658837 | None:intergenic | 20.0% |
| !! | ACAAGAATTTATGAATAATC+CGG | - | chr7.2:4660525-4660544 | None:intergenic | 20.0% |
| !! | TAGAGACTAAAAATTATTTG+TGG | + | chr7.2:4660735-4660754 | MS.gene28622:intron | 20.0% |
| !! | TGTATGTCAATGATAATAAT+AGG | - | chr7.2:4658846-4658865 | None:intergenic | 20.0% |
| !!! | AAATCTCTTTTCTAATGAAT+GGG | + | chr7.2:4659213-4659232 | MS.gene28622:intron | 20.0% |
| !!! | AATTATTCTTTGGAAATTTG+TGG | + | chr7.2:4658893-4658912 | MS.gene28622:intron | 20.0% |
| !!! | CATATCATCATAAGTTTTTT+TGG | - | chr7.2:4658033-4658052 | None:intergenic | 20.0% |
| !!! | GTTATGTGTTATAATTTTTG+TGG | + | chr7.2:4658663-4658682 | MS.gene28622:intron | 20.0% |
| !!! | TGCTAATGATTTTTTTTTTC+AGG | + | chr7.2:4659444-4659463 | MS.gene28622:intron | 20.0% |
| !!! | TTTTTCCAATTTTTGTTAAG+AGG | + | chr7.2:4658810-4658829 | MS.gene28622:intron | 20.0% |
| ! | AAAAAAATCATTAGCATCCA+TGG | - | chr7.2:4659440-4659459 | None:intergenic | 25.0% |
| ! | AAAATTACGACATTCCAATA+TGG | - | chr7.2:4659399-4659418 | None:intergenic | 25.0% |
| ! | AATTGAAGAATTAATGTCGA+AGG | + | chr7.2:4659348-4659367 | MS.gene28622:CDS | 25.0% |
| ! | AATTTAGAGGACAGAAAATA+TGG | + | chr7.2:4659317-4659336 | MS.gene28622:CDS | 25.0% |
| ! | ACAATTATATCCAAGTTTAC+AGG | - | chr7.2:4659640-4659659 | None:intergenic | 25.0% |
| ! | ATAATGTTTGTCAGTATGTT+TGG | + | chr7.2:4658256-4658275 | MS.gene28622:intron | 25.0% |
| ! | ATCAAAAAACCAATTTCCAA+CGG | - | chr7.2:4660907-4660926 | None:intergenic | 25.0% |
| ! | ATTGAAGAATTAATGTCGAA+GGG | + | chr7.2:4659349-4659368 | MS.gene28622:CDS | 25.0% |
| ! | CTGAGAACAATAAAAAGAAA+GGG | - | chr7.2:4660831-4660850 | None:intergenic | 25.0% |
| ! | TCTGAGAACAATAAAAAGAA+AGG | - | chr7.2:4660832-4660851 | None:intergenic | 25.0% |
| !! | AAAAAACACCATTCATTTTG+TGG | + | chr7.2:4658920-4658939 | MS.gene28622:intron | 25.0% |
| !! | AATCTTTTCCTCTTCTATTT+CGG | + | chr7.2:4660682-4660701 | MS.gene28622:intron | 25.0% |
| !! | ATACAAGTTTTCTAACAGAA+AGG | - | chr7.2:4659814-4659833 | None:intergenic | 25.0% |
| !! | GAAATCTCTTTTCTAATGAA+TGG | + | chr7.2:4659212-4659231 | MS.gene28622:intron | 25.0% |
| !!! | ATCAGTAGCTTATTTTCATA+AGG | + | chr7.2:4658065-4658084 | MS.gene28622:intron | 25.0% |
| !!! | ATGTTCAAGTATTTTGATCA+TGG | + | chr7.2:4658355-4658374 | MS.gene28622:intron | 25.0% |
| !!! | TGTTCAAGTATTTTGATCAT+GGG | + | chr7.2:4658356-4658375 | MS.gene28622:intron | 25.0% |
| !!! | TTGTTTTTCCATGTATTTTG+AGG | - | chr7.2:4658549-4658568 | None:intergenic | 25.0% |
| !!! | TTTATTAGTCTTTGCTAGTA+TGG | + | chr7.2:4659187-4659206 | MS.gene28622:intron | 25.0% |
| AACAATAAAAAGAAAGGGAG+AGG | - | chr7.2:4660826-4660845 | None:intergenic | 30.0% | |
| AATAAAGCTGAAGAAAATCC+TGG | + | chr7.2:4658593-4658612 | MS.gene28622:CDS | 30.0% | |
| AATCAGAAAATTACCGAAGT+TGG | - | chr7.2:4659918-4659937 | None:intergenic | 30.0% | |
| ACATTTCACTTTGGTAGATT+TGG | - | chr7.2:4659541-4659560 | None:intergenic | 30.0% | |
| ATCACTCAAACATTTCACTT+TGG | - | chr7.2:4659550-4659569 | None:intergenic | 30.0% | |
| ATCAGAAAATTACCGAAGTT+GGG | - | chr7.2:4659917-4659936 | None:intergenic | 30.0% | |
| ATGTAGAACTGATATATCTG+GGG | + | chr7.2:4659674-4659693 | MS.gene28622:intron | 30.0% | |
| CAAATGCTAAATGACATCAA+AGG | + | chr7.2:4660479-4660498 | MS.gene28622:CDS | 30.0% | |
| CATGTAGAACTGATATATCT+GGG | + | chr7.2:4659673-4659692 | MS.gene28622:intron | 30.0% | |
| GTATGAATTCACAAGTCAAT+TGG | - | chr7.2:4659275-4659294 | None:intergenic | 30.0% | |
| TATTCAATCATAGATGTCCA+TGG | + | chr7.2:4659420-4659439 | MS.gene28622:intron | 30.0% | |
| TCATGTAGAACTGATATATC+TGG | + | chr7.2:4659672-4659691 | MS.gene28622:intron | 30.0% | |
| ! | AAATAGTTGGCTCATTCAAT+TGG | + | chr7.2:4658328-4658347 | MS.gene28622:CDS | 30.0% |
| ! | ACATGATCGATCAAATTTTG+AGG | - | chr7.2:4660024-4660043 | None:intergenic | 30.0% |
| ! | ACCTAGTATTTTGTCTCAAA+TGG | + | chr7.2:4658206-4658225 | MS.gene28622:intron | 30.0% |
| ! | CTGTTTGAAAACTTTTCTCA+GGG | + | chr7.2:4658464-4658483 | MS.gene28622:intron | 30.0% |
| ! | GCAAATGTACATTTTTCTTG+TGG | + | chr7.2:4659109-4659128 | MS.gene28622:intron | 30.0% |
| ! | TCCATTTGAGACAAAATACT+AGG | - | chr7.2:4658210-4658229 | None:intergenic | 30.0% |
| !! | ACTGTACTATTTTAGAAGCA+CGG | - | chr7.2:4660637-4660656 | None:intergenic | 30.0% |
| !! | AGAGAGTGTCAAAATTACTT+TGG | - | chr7.2:4660365-4660384 | None:intergenic | 30.0% |
| !! | ATTGACGTCTTTGAAATTGT+AGG | + | chr7.2:4659848-4659867 | MS.gene28622:intron | 30.0% |
| !! | TAGCTTATTTTCATAAGGTC+TGG | + | chr7.2:4658070-4658089 | MS.gene28622:intron | 30.0% |
| !! | TGCTTCTAAAATAGTACAGT+TGG | + | chr7.2:4660637-4660656 | MS.gene28622:intron | 30.0% |
| !!! | TGTGCACAGATTTTTTTAAC+TGG | + | chr7.2:4658697-4658716 | MS.gene28622:intron | 30.0% |
| !!! | TTTTTTCAGGCTCTTTTATC+TGG | + | chr7.2:4659457-4659476 | MS.gene28622:intron | 30.0% |
| AAAAAGTTGTCTTAACCACC+TGG | + | chr7.2:4659890-4659909 | MS.gene28622:CDS | 35.0% | |
| AGAGGTAAAACTATGGTTGT+TGG | + | chr7.2:4658985-4659004 | MS.gene28622:intron | 35.0% | |
| CAATTATTCCAAGATCCATG+AGG | - | chr7.2:4660297-4660316 | None:intergenic | 35.0% | |
| CCTCTTCTATTTCGGAAAAT+TGG | + | chr7.2:4660690-4660709 | MS.gene28622:intron | 35.0% | |
| GAAAAACAACTACCATTCAC+TGG | + | chr7.2:4658560-4658579 | MS.gene28622:CDS | 35.0% | |
| GAATCATGCCACAAAATGAA+TGG | - | chr7.2:4658931-4658950 | None:intergenic | 35.0% | |
| GAGTGTCAAAATTACTTTGG+AGG | - | chr7.2:4660362-4660381 | None:intergenic | 35.0% | |
| GCAGATTTCAGTACACATAT+GGG | - | chr7.2:4658641-4658660 | None:intergenic | 35.0% | |
| GGAAATACTGAGAGAGATAA+TGG | + | chr7.2:4660711-4660730 | MS.gene28622:intron | 35.0% | |
| GTAGATTTGGAAACAAGCTT+TGG | - | chr7.2:4659528-4659547 | None:intergenic | 35.0% | |
| GTTGGATTACTCTATTATCC+TGG | + | chr7.2:4659003-4659022 | MS.gene28622:intron | 35.0% | |
| GTTGGTTAAACTAGAAGCTA+TGG | - | chr7.2:4660194-4660213 | None:intergenic | 35.0% | |
| TATATACCACAAACACCAGT+TGG | - | chr7.2:4660212-4660231 | None:intergenic | 35.0% | |
| TCATGCATACCATGTTGTTA+AGG | - | chr7.2:4660604-4660623 | None:intergenic | 35.0% | |
| TCCAATATGGAAAACCTTGT+TGG | - | chr7.2:4659386-4659405 | None:intergenic | 35.0% | |
| TGTAGAACTGATATATCTGG+GGG | + | chr7.2:4659675-4659694 | MS.gene28622:intron | 35.0% | |
| TGTTTGTCAGTATGTTTGGA+TGG | + | chr7.2:4658260-4658279 | MS.gene28622:intron | 35.0% | |
| TTGCTCAATAATCCAGTGAA+TGG | - | chr7.2:4658575-4658594 | None:intergenic | 35.0% | |
| TTTAGAAAAACTACTCGACG+CGG | + | chr7.2:4658521-4658540 | MS.gene28622:CDS | 35.0% | |
| ! | ACTTTGGAGGATCTGAATTT+GGG | - | chr7.2:4660349-4660368 | None:intergenic | 35.0% |
| ! | AGGTGGTTAAGACAACTTTT+TGG | - | chr7.2:4659891-4659910 | None:intergenic | 35.0% |
| ! | ATGTACATTTTTCTTGTGGC+AGG | + | chr7.2:4659113-4659132 | MS.gene28622:intron | 35.0% |
| ! | ATTCATGGAGCTGATTCAAA+AGG | + | chr7.2:4657884-4657903 | MS.gene28622:CDS | 35.0% |
| ! | CAAACATGATTTGTATGACC+AGG | - | chr7.2:4659024-4659043 | None:intergenic | 35.0% |
| ! | CCAATTTTCCGAAATAGAAG+AGG | - | chr7.2:4660693-4660712 | None:intergenic | 35.0% |
| ! | CCTGAGAAAAGTTTTCAAAC+AGG | - | chr7.2:4658466-4658485 | None:intergenic | 35.0% |
| ! | CCTGTTTGAAAACTTTTCTC+AGG | + | chr7.2:4658463-4658482 | MS.gene28622:intron | 35.0% |
| ! | TACTTTGGAGGATCTGAATT+TGG | - | chr7.2:4660350-4660369 | None:intergenic | 35.0% |
| ! | TCTAAAGACACAAGTTCTGA+TGG | - | chr7.2:4658507-4658526 | None:intergenic | 35.0% |
| ! | TTTGAAAACTTTTCTCAGGG+AGG | + | chr7.2:4658467-4658486 | MS.gene28622:intron | 35.0% |
| ! | TTTTCAACGACTTCTCAATC+CGG | + | chr7.2:4660503-4660522 | MS.gene28622:CDS | 35.0% |
| !! | ATTAGTCTTTGCTAGTATGG+AGG | + | chr7.2:4659190-4659209 | MS.gene28622:intron | 35.0% |
| !! | TAGCTTCTAGTTTAACCAAC+TGG | + | chr7.2:4660194-4660213 | MS.gene28622:intron | 35.0% |
| !! | TTGTTTTGCTCATTGCCAAT+CGG | + | chr7.2:4660541-4660560 | MS.gene28622:CDS | 35.0% |
| !!! | AGTATTTTGATCATGGGTCT+CGG | + | chr7.2:4658362-4658381 | MS.gene28622:intron | 35.0% |
| AAGTTTACAGGCAATGATGC+AGG | - | chr7.2:4659628-4659647 | None:intergenic | 40.0% | |
| AATCGGAGAGACAAGATACA+TGG | + | chr7.2:4660558-4660577 | MS.gene28622:CDS | 40.0% | |
| AGGGTAAAAGGGAAAAAACC+AGG | - | chr7.2:4658614-4658633 | None:intergenic | 40.0% | |
| ATATGGGTGGAAGGGTAAAA+GGG | - | chr7.2:4658625-4658644 | None:intergenic | 40.0% | |
| ATGTATCTTGTCTCTCCGAT+TGG | - | chr7.2:4660559-4660578 | None:intergenic | 40.0% | |
| CATACCATGTTGTTAAGGAG+GGG | - | chr7.2:4660599-4660618 | None:intergenic | 40.0% | |
| CGCAGATTTCAGTACACATA+TGG | - | chr7.2:4658642-4658661 | None:intergenic | 40.0% | |
| GAACGTATATCATCTGCCAA+TGG | - | chr7.2:4657818-4657837 | None:intergenic | 40.0% | |
| GAGAGCTTTCATCATAGCAA+AGG | - | chr7.2:4660766-4660785 | None:intergenic | 40.0% | |
| GATTTCAGTACACATATGGG+TGG | - | chr7.2:4658638-4658657 | None:intergenic | 40.0% | |
| GCAATGAAATCTTCTGTCAG+TGG | + | chr7.2:4659783-4659802 | MS.gene28622:intron | 40.0% | |
| GCATACCATGTTGTTAAGGA+GGG | - | chr7.2:4660600-4660619 | None:intergenic | 40.0% | |
| GTAGAACTGATATATCTGGG+GGG | + | chr7.2:4659676-4659695 | MS.gene28622:intron | 40.0% | |
| GTCTTCACTATTCATGTGTG+TGG | + | chr7.2:4658179-4658198 | MS.gene28622:intron | 40.0% | |
| GTGAAATGTTTGAGTGATGC+TGG | + | chr7.2:4659552-4659571 | MS.gene28622:intron | 40.0% | |
| GTTTAACCAACTGGTGTTTG+TGG | + | chr7.2:4660203-4660222 | MS.gene28622:intron | 40.0% | |
| TGAATGCAGCTTATGATGCA+TGG | + | chr7.2:4660064-4660083 | MS.gene28622:CDS | 40.0% | |
| TGACAATACCTGCCATAATC+TGG | + | chr7.2:4660965-4660984 | MS.gene28622:CDS | 40.0% | |
| TGCATACCATGTTGTTAAGG+AGG | - | chr7.2:4660601-4660620 | None:intergenic | 40.0% | |
| TGCATCATTGCCTGTAAACT+TGG | + | chr7.2:4659627-4659646 | MS.gene28622:intron | 40.0% | |
| TGTGAATTCATACCCCTTTC+AGG | + | chr7.2:4659282-4659301 | MS.gene28622:intron | 40.0% | |
| TGTTTGGATGGAACTTTACC+TGG | + | chr7.2:4658272-4658291 | MS.gene28622:CDS | 40.0% | |
| ! | ATTATGGCAGGTATTGTCAC+AGG | - | chr7.2:4660964-4660983 | None:intergenic | 40.0% |
| ! | GCCAACAAGGTTTTCCATAT+TGG | + | chr7.2:4659382-4659401 | MS.gene28622:intron | 40.0% |
| ! | TAGTTGGCTCATTCAATTGG+AGG | + | chr7.2:4658331-4658350 | MS.gene28622:CDS | 40.0% |
| ! | TCTTTTATCTGGATGCTCTG+CGG | + | chr7.2:4659468-4659487 | MS.gene28622:CDS | 40.0% |
| ! | TGAATGGGCTCTTCTTAAGA+AGG | + | chr7.2:4659228-4659247 | MS.gene28622:intron | 40.0% |
| ! | TTATGGCAGGTATTGTCACA+GGG | - | chr7.2:4660963-4660982 | None:intergenic | 40.0% |
| ! | TTTGTTTCCTCGAAGTGCTA+TGG | + | chr7.2:4660160-4660179 | MS.gene28622:intron | 40.0% |
| ! | TTTTTCTTGTGGCAGGAAGA+AGG | + | chr7.2:4659120-4659139 | MS.gene28622:intron | 40.0% |
| !! | TCAAAGTGAGGTACTGTGAT+GGG | + | chr7.2:4658727-4658746 | MS.gene28622:CDS | 40.0% |
| AAATTACCGAAGTTGGGTCC+AGG | - | chr7.2:4659911-4659930 | None:intergenic | 45.0% | |
| ACGAGGTCAGTGAGATAGTA+TGG | + | chr7.2:4658775-4658794 | MS.gene28622:intron | 45.0% | |
| ACGCGGTTCCTCAAAATACA+TGG | + | chr7.2:4658538-4658557 | MS.gene28622:CDS | 45.0% | |
| ACTGGAACAGAGTCAAAGTG+AGG | + | chr7.2:4658715-4658734 | MS.gene28622:CDS | 45.0% | |
| AGACACAGAATCTCTCACCT+CGG | + | chr7.2:4657762-4657781 | MS.gene28622:CDS | 45.0% | |
| ATCCATACCATAGCACTTCG+AGG | - | chr7.2:4660170-4660189 | None:intergenic | 45.0% | |
| ATCCCACTCACTCTCATTCA+TGG | + | chr7.2:4657869-4657888 | MS.gene28622:CDS | 45.0% | |
| ATTTGCACCAGATCCAGATC+CGG | - | chr7.2:4658312-4658331 | None:intergenic | 45.0% | |
| CACATTGAGGATCTCTTTGG+AGG | + | chr7.2:4659701-4659720 | MS.gene28622:CDS | 45.0% | |
| CAGTACACATATGGGTGGAA+GGG | - | chr7.2:4658633-4658652 | None:intergenic | 45.0% | |
| CATATGGGTGGAAGGGTAAA+AGG | - | chr7.2:4658626-4658645 | None:intergenic | 45.0% | |
| CTCCATGAATGAGAGTGAGT+GGG | - | chr7.2:4657874-4657893 | None:intergenic | 45.0% | |
| CTGGATCTGGTGCAAATAGT+TGG | + | chr7.2:4658315-4658334 | MS.gene28622:CDS | 45.0% | |
| CTTGAAGACCAGATTATGGC+AGG | - | chr7.2:4660976-4660995 | None:intergenic | 45.0% | |
| GCACACATTGAGGATCTCTT+TGG | + | chr7.2:4659698-4659717 | MS.gene28622:CDS | 45.0% | |
| GCTGCACAGCTTCAATTTAG+AGG | + | chr7.2:4659304-4659323 | MS.gene28622:CDS | 45.0% | |
| TCAGTACACATATGGGTGGA+AGG | - | chr7.2:4658634-4658653 | None:intergenic | 45.0% | |
| TTGCGATTGCCGTTGGAAAT+TGG | + | chr7.2:4660895-4660914 | MS.gene28622:CDS | 45.0% | |
| TTTCCAACGGCAATCGCAAT+TGG | - | chr7.2:4660894-4660913 | None:intergenic | 45.0% | |
| ! | CGATGTCGTTTCAGTTCCAT+TGG | + | chr7.2:4657799-4657818 | MS.gene28622:CDS | 45.0% |
| ! | CTTTTATCTGGATGCTCTGC+GGG | + | chr7.2:4659469-4659488 | MS.gene28622:CDS | 45.0% |
| ! | GAAAACTTTTCTCAGGGAGG+AGG | + | chr7.2:4658470-4658489 | MS.gene28622:intron | 45.0% |
| ! | TATGGCAGGTATTGTCACAG+GGG | - | chr7.2:4660962-4660981 | None:intergenic | 45.0% |
| ! | TCGTTTTCCAAGATATCCCG+AGG | - | chr7.2:4657782-4657801 | None:intergenic | 45.0% |
| ! | TGGAGGTGTAGTTAGCTTAC+AGG | + | chr7.2:4659718-4659737 | MS.gene28622:intron | 45.0% |
| ! | TTCCTCGAAGTGCTATGGTA+TGG | + | chr7.2:4660165-4660184 | MS.gene28622:intron | 45.0% |
| !! | CAAAGTGAGGTACTGTGATG+GGG | + | chr7.2:4658728-4658747 | MS.gene28622:CDS | 45.0% |
| !! | GTCAAAGTGAGGTACTGTGA+TGG | + | chr7.2:4658726-4658745 | MS.gene28622:CDS | 45.0% |
| AATGCGGGGCTAGACTTTCT+TGG | - | chr7.2:4660266-4660285 | None:intergenic | 50.0% | |
| AGAGTGAGTGGGATCATGAG+AGG | - | chr7.2:4657863-4657882 | None:intergenic | 50.0% | |
| AGTGGGATCATGAGAGGTTG+AGG | - | chr7.2:4657857-4657876 | None:intergenic | 50.0% | |
| ATGAGGATCTGCTGAATGCG+GGG | - | chr7.2:4660280-4660299 | None:intergenic | 50.0% | |
| CAATGATGCAGGCTAGAGGT+CGG | - | chr7.2:4659617-4659636 | None:intergenic | 50.0% | |
| CAGCAGATCCTCATGGATCT+TGG | + | chr7.2:4660286-4660305 | MS.gene28622:CDS | 50.0% | |
| CAGTGGAGACAGTCAAAACG+AGG | + | chr7.2:4658758-4658777 | MS.gene28622:CDS | 50.0% | |
| CATGAGGATCTGCTGAATGC+GGG | - | chr7.2:4660281-4660300 | None:intergenic | 50.0% | |
| CCATGAGGATCTGCTGAATG+CGG | - | chr7.2:4660282-4660301 | None:intergenic | 50.0% | |
| CTCTCCCCTCCTTAACAACA+TGG | + | chr7.2:4660592-4660611 | MS.gene28622:CDS | 50.0% | |
| GACACAGAATCTCTCACCTC+GGG | + | chr7.2:4657763-4657782 | MS.gene28622:CDS | 50.0% | |
| GCTCCATGAATGAGAGTGAG+TGG | - | chr7.2:4657875-4657894 | None:intergenic | 50.0% | |
| GCTGCATTCAGCAGAAACAG+TGG | - | chr7.2:4660054-4660073 | None:intergenic | 50.0% | |
| GGGAATGAAGAACGCCAACA+AGG | + | chr7.2:4659369-4659388 | MS.gene28622:CDS | 50.0% | |
| GGTGGGGAGAGGTAAAACTA+TGG | + | chr7.2:4658978-4658997 | MS.gene28622:intron | 50.0% | |
| TAACCACCTGGACCCAACTT+CGG | + | chr7.2:4659902-4659921 | MS.gene28622:CDS | 50.0% | |
| TCTCTCACCTCGGGATATCT+TGG | + | chr7.2:4657772-4657791 | MS.gene28622:CDS | 50.0% | |
| TGAAGCTGTGCAGCCTGAAA+GGG | - | chr7.2:4659298-4659317 | None:intergenic | 50.0% | |
| TGCAGCTTATGATGCATGGC+AGG | + | chr7.2:4660068-4660087 | MS.gene28622:CDS | 50.0% | |
| TTGAAGCTGTGCAGCCTGAA+AGG | - | chr7.2:4659299-4659318 | None:intergenic | 50.0% | |
| TTTGCACCAGATCCAGATCC+GGG | - | chr7.2:4658311-4658330 | None:intergenic | 50.0% | |
| ! | ACTTTTCTCAGGGAGGAGGA+TGG | + | chr7.2:4658474-4658493 | MS.gene28622:intron | 50.0% |
| ! | GGAGCTGATTCAAAAGGAGC+AGG | + | chr7.2:4657890-4657909 | MS.gene28622:CDS | 50.0% |
| ATCCAGATCCGGGATGGAAG+TGG | - | chr7.2:4658301-4658320 | None:intergenic | 55.0% | |
| ATGAGAGGTTGAGGCAGCAG+GGG | - | chr7.2:4657848-4657867 | None:intergenic | 55.0% | |
| ATTACCTCACGCAGCCTGCT+GGG | + | chr7.2:4658956-4658975 | MS.gene28622:intron | 55.0% | |
| CAGCCAATTGCGATTGCCGT+TGG | + | chr7.2:4660888-4660907 | MS.gene28622:intron | 55.0% | |
| CAGGCAATGATGCAGGCTAG+AGG | - | chr7.2:4659621-4659640 | None:intergenic | 55.0% | |
| CATGAGAGGTTGAGGCAGCA+GGG | - | chr7.2:4657849-4657868 | None:intergenic | 55.0% | |
| CCGCATTCAGCAGATCCTCA+TGG | + | chr7.2:4660279-4660298 | MS.gene28622:CDS | 55.0% | |
| CCTGGTTACCACTTCCATCC+CGG | + | chr7.2:4658290-4658309 | MS.gene28622:CDS | 55.0% | |
| GAAGCTGTGCAGCCTGAAAG+GGG | - | chr7.2:4659297-4659316 | None:intergenic | 55.0% | |
| TACCACTTCCATCCCGGATC+TGG | + | chr7.2:4658296-4658315 | MS.gene28622:CDS | 55.0% | |
| TATTACCTCACGCAGCCTGC+TGG | + | chr7.2:4658955-4658974 | MS.gene28622:intron | 55.0% | |
| TCATGAGAGGTTGAGGCAGC+AGG | - | chr7.2:4657850-4657869 | None:intergenic | 55.0% | |
| TTACCGAAGTTGGGTCCAGG+TGG | - | chr7.2:4659908-4659927 | None:intergenic | 55.0% | |
| TTATCTGGATGCTCTGCGGG+TGG | + | chr7.2:4659472-4659491 | MS.gene28622:CDS | 55.0% | |
| TTCCATCCCGGATCTGGATC+TGG | + | chr7.2:4658302-4658321 | MS.gene28622:CDS | 55.0% | |
| ! | TATCTGGGGGGCACACATTG+AGG | + | chr7.2:4659688-4659707 | MS.gene28622:CDS | 55.0% |
| ! | TGTGATGGGGCGTCTTTCAG+TGG | + | chr7.2:4658741-4658760 | MS.gene28622:CDS | 55.0% |
| CACCAGATCCAGATCCGGGA+TGG | - | chr7.2:4658307-4658326 | None:intergenic | 60.0% | |
| CCGGGATGGAAGTGGTAACC+AGG | - | chr7.2:4658293-4658312 | None:intergenic | 60.0% | |
| TTACCTCACGCAGCCTGCTG+GGG | + | chr7.2:4658957-4658976 | MS.gene28622:intron | 60.0% | |
| !! | TGTGCGCGCGCGCTTTGTTT+AGG | + | chr7.2:4658147-4658166 | MS.gene28622:intron | 60.0% |
| AGGTTGAGGCAGCAGGGGAG+AGG | - | chr7.2:4657843-4657862 | None:intergenic | 65.0% | |
| TGGATGCTCTGCGGGTGGTC+TGG | + | chr7.2:4659477-4659496 | MS.gene28622:CDS | 65.0% | |
| TTACCTCTCCCCACCCCAGC+AGG | - | chr7.2:4658973-4658992 | None:intergenic | 65.0% | |
| CTCACGCAGCCTGCTGGGGT+GGG | + | chr7.2:4658961-4658980 | MS.gene28622:intron | 70.0% | |
| TCACGCAGCCTGCTGGGGTG+GGG | + | chr7.2:4658962-4658981 | MS.gene28622:intron | 70.0% | |
| CAGCCTGCTGGGGTGGGGAG+AGG | + | chr7.2:4658967-4658986 | MS.gene28622:intron | 75.0% | |
| CCACCCCAGCAGGCTGCGTG+AGG | - | chr7.2:4658963-4658982 | None:intergenic | 75.0% | |
| CCTCACGCAGCCTGCTGGGG+TGG | + | chr7.2:4658960-4658979 | MS.gene28622:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 4657741 | 4660998 | 4657741 | ID=MS.gene28622 |
| chr7.2 | mRNA | 4657741 | 4660998 | 4657741 | ID=MS.gene28622.t1;Parent=MS.gene28622 |
| chr7.2 | exon | 4657741 | 4657911 | 4657741 | ID=MS.gene28622.t1.exon1;Parent=MS.gene28622.t1 |
| chr7.2 | CDS | 4657741 | 4657911 | 4657741 | ID=cds.MS.gene28622.t1;Parent=MS.gene28622.t1 |
| chr7.2 | exon | 4658270 | 4658352 | 4658270 | ID=MS.gene28622.t1.exon2;Parent=MS.gene28622.t1 |
| chr7.2 | CDS | 4658270 | 4658352 | 4658270 | ID=cds.MS.gene28622.t1;Parent=MS.gene28622.t1 |
| chr7.2 | exon | 4658485 | 4658614 | 4658485 | ID=MS.gene28622.t1.exon3;Parent=MS.gene28622.t1 |
| chr7.2 | CDS | 4658485 | 4658614 | 4658485 | ID=cds.MS.gene28622.t1;Parent=MS.gene28622.t1 |
| chr7.2 | exon | 4658706 | 4658779 | 4658706 | ID=MS.gene28622.t1.exon4;Parent=MS.gene28622.t1 |
| chr7.2 | CDS | 4658706 | 4658779 | 4658706 | ID=cds.MS.gene28622.t1;Parent=MS.gene28622.t1 |
| chr7.2 | exon | 4659304 | 4659390 | 4659304 | ID=MS.gene28622.t1.exon5;Parent=MS.gene28622.t1 |
| chr7.2 | CDS | 4659304 | 4659390 | 4659304 | ID=cds.MS.gene28622.t1;Parent=MS.gene28622.t1 |
| chr7.2 | exon | 4659466 | 4659551 | 4659466 | ID=MS.gene28622.t1.exon6;Parent=MS.gene28622.t1 |
| chr7.2 | CDS | 4659466 | 4659551 | 4659466 | ID=cds.MS.gene28622.t1;Parent=MS.gene28622.t1 |
| chr7.2 | exon | 4659680 | 4659722 | 4659680 | ID=MS.gene28622.t1.exon7;Parent=MS.gene28622.t1 |
| chr7.2 | CDS | 4659680 | 4659722 | 4659680 | ID=cds.MS.gene28622.t1;Parent=MS.gene28622.t1 |
| chr7.2 | exon | 4659870 | 4659923 | 4659870 | ID=MS.gene28622.t1.exon8;Parent=MS.gene28622.t1 |
| chr7.2 | CDS | 4659870 | 4659923 | 4659870 | ID=cds.MS.gene28622.t1;Parent=MS.gene28622.t1 |
| chr7.2 | exon | 4660012 | 4660089 | 4660012 | ID=MS.gene28622.t1.exon9;Parent=MS.gene28622.t1 |
| chr7.2 | CDS | 4660012 | 4660089 | 4660012 | ID=cds.MS.gene28622.t1;Parent=MS.gene28622.t1 |
| chr7.2 | exon | 4660261 | 4660366 | 4660261 | ID=MS.gene28622.t1.exon10;Parent=MS.gene28622.t1 |
| chr7.2 | CDS | 4660261 | 4660366 | 4660261 | ID=cds.MS.gene28622.t1;Parent=MS.gene28622.t1 |
| chr7.2 | exon | 4660468 | 4660613 | 4660468 | ID=MS.gene28622.t1.exon11;Parent=MS.gene28622.t1 |
| chr7.2 | CDS | 4660468 | 4660613 | 4660468 | ID=cds.MS.gene28622.t1;Parent=MS.gene28622.t1 |
| chr7.2 | exon | 4660891 | 4660998 | 4660891 | ID=MS.gene28622.t1.exon12;Parent=MS.gene28622.t1 |
| chr7.2 | CDS | 4660891 | 4660998 | 4660891 | ID=cds.MS.gene28622.t1;Parent=MS.gene28622.t1 |
| Gene Sequence |
| Protein sequence |
