AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059901

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059901.t1 MTR_2g081010 95.290 276 13 0 1 276 1 276 0.0 521
MS.gene059901.t1 MTR_2g081010 95.255 274 13 0 1 274 1 274 0.0 516
MS.gene059901.t1 MTR_2g081010 93.868 212 13 0 1 212 1 212 1.94e-147 412
MS.gene059901.t1 MTR_0024s0260 31.343 134 91 1 144 276 206 339 2.35e-16 78.6
MS.gene059901.t1 MTR_0024s0260 31.061 132 90 1 144 274 206 337 1.56e-15 75.9
MS.gene059901.t1 MTR_7g498280 32.414 145 92 3 133 276 94 233 7.03e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059901.t1 AT1G25290 57.252 262 104 2 23 276 25 286 3.58e-100 296
MS.gene059901.t1 AT1G25290 55.390 269 105 3 23 276 25 293 3.84e-97 289
MS.gene059901.t1 AT5G38510 32.090 134 90 1 142 274 216 349 2.10e-13 70.1
MS.gene059901.t1 AT5G38510 32.090 134 90 1 142 274 216 349 2.10e-13 70.1
MS.gene059901.t1 AT5G38510 32.090 134 90 1 142 274 216 349 2.10e-13 70.1
MS.gene059901.t1 AT1G77860 33.088 136 85 3 142 276 111 241 5.35e-13 68.6
MS.gene059901.t1 AT1G77860 33.088 136 85 3 142 276 111 241 5.84e-13 68.6

Find 72 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCACTTCCTTCCATTAAA+TGG 0.175610 2.2:+15050711 None:intergenic
GTATTTCTCATGCAGCTTAT+TGG 0.251876 2.2:-15049068 MS.gene059901:intron
TATTTCTCATGCAGCTTATT+GGG 0.272605 2.2:-15049067 MS.gene059901:intron
AGTGGGACCAACTGAATTTA+AGG 0.276075 2.2:+15049968 None:intergenic
TGTTTAGATTGAAGGATAAA+TGG 0.318157 2.2:-15050887 MS.gene059901:CDS
CATCAACTGGCATTGACAAC+TGG 0.321814 2.2:-15049040 MS.gene059901:CDS
CAGGTGCAGTTATGAGTTAT+TGG 0.323168 2.2:-15049803 MS.gene059901:CDS
TGCTCCCGTGTTTAGATTGA+AGG 0.329417 2.2:-15050895 MS.gene059901:CDS
GCATTTCCAGAGCTGGCTTC+AGG 0.332234 2.2:+15050759 None:intergenic
GGGAGACACGGTGGCTGAAA+TGG 0.347067 2.2:+15051764 None:intergenic
CCCACTGTGGAGAGCTTTAG+TGG 0.376144 2.2:-15049951 MS.gene059901:CDS
AATTCAATCCTTTGAGTTGA+AGG 0.377772 2.2:+15050853 None:intergenic
ACAAGTAATTGCCCTCAATA+TGG 0.389857 2.2:-15049432 MS.gene059901:intron
TGCAAATATTGGACACCTAA+TGG 0.395874 2.2:-15050087 MS.gene059901:intron
TCTACTTCGTTCCTGTCTCC+AGG 0.414096 2.2:-15051722 MS.gene059901:intron
CTTATTGGGTTATCATCAAC+TGG 0.417736 2.2:-15049053 MS.gene059901:CDS
GAAATGGAGGGACGCGGCGG+TGG 0.422096 2.2:+15051780 None:intergenic
CTGTCACCGGTTTGCAAGGT+GGG 0.434972 2.2:-15051826 MS.gene059901:CDS
CCCACGACAAAAGCTTGCCT+TGG 0.437216 2.2:+15050264 None:intergenic
TGAGTCGGCATTTCCAGAGC+TGG 0.439376 2.2:+15050752 None:intergenic
TTGCAAACCGGTGACAGAAA+TGG 0.444522 2.2:+15051832 None:intergenic
TTAAGGCACAAAGACCTTGT+AGG 0.451701 2.2:-15049485 MS.gene059901:CDS
ATGCCTGCAGTAGGTGCGTC+AGG 0.452126 2.2:-15049771 MS.gene059901:CDS
AACCGGTGACAGAAATGGCT+TGG 0.460775 2.2:+15051837 None:intergenic
GGAAGACCTGAAGCCAGCTC+TGG 0.461947 2.2:-15050765 MS.gene059901:CDS
TATCTTCAATTGTCAAGTGA+TGG 0.464338 2.2:-15050831 MS.gene059901:CDS
GCCCAAGCCATTTCTGTCAC+CGG 0.466220 2.2:-15051839 MS.gene059901:CDS
CCACGACAAAAGCTTGCCTT+GGG 0.477575 2.2:+15050265 None:intergenic
GGTTTAGGTTGGATCGGTTG+CGG 0.482114 2.2:-15049516 MS.gene059901:intron
ATCAACTGGCATTGACAACT+GGG 0.484122 2.2:-15049039 MS.gene059901:CDS
ATCTTCAATTGTCAAGTGAT+GGG 0.485198 2.2:-15050830 MS.gene059901:CDS
ACCGGTGACAGAAATGGCTT+GGG 0.501021 2.2:+15051838 None:intergenic
TGTTACTCCTTAAATTCAGT+TGG 0.501810 2.2:-15049975 MS.gene059901:CDS
TAAGGACCCACCTTGCAAAC+CGG 0.514465 2.2:+15051820 None:intergenic
GTAGAAAGTGAAGGCGGAGA+CGG 0.519386 2.2:+15051740 None:intergenic
ATGAGACACTTACCATATTG+AGG 0.528872 2.2:+15049420 None:intergenic
ATCCATTTAATGGAAGGAAG+TGG 0.533831 2.2:-15050713 MS.gene059901:CDS
GGCGGAGACGGTGGGAGACA+CGG 0.537970 2.2:+15051752 None:intergenic
TCATTGACAAAGGACAACTT+TGG 0.538888 2.2:-15050136 MS.gene059901:CDS
ATTTCTGTCACCGGTTTGCA+AGG 0.538917 2.2:-15051830 MS.gene059901:CDS
GAAAGTGAAGGCGGAGACGG+TGG 0.544225 2.2:+15051743 None:intergenic
GCTCCTGACGCACCTACTGC+AGG 0.547227 2.2:+15049768 None:intergenic
TGTAATGGTTTAGGTTGGAT+CGG 0.547688 2.2:-15049522 MS.gene059901:intron
GCAATGATATCAAGTGGGTA+AGG 0.550443 2.2:+15051802 None:intergenic
TAAATTGCAAGATATCTTCG+AGG 0.552516 2.2:+15049927 None:intergenic
CACAAAGACCTTGTAGGAGG+TGG 0.557075 2.2:-15049479 MS.gene059901:CDS
TGAGACACTTACCATATTGA+GGG 0.563701 2.2:+15049421 None:intergenic
CAAAGATGCCTTCAACTCAA+AGG 0.568006 2.2:-15050861 MS.gene059901:CDS
CTCACAAAACATTGGCAGCA+AGG 0.571689 2.2:+15050679 None:intergenic
AGACACGGTGGCTGAAATGG+AGG 0.574356 2.2:+15051767 None:intergenic
TCTGTCACCGGTTTGCAAGG+TGG 0.583568 2.2:-15051827 MS.gene059901:CDS
CCACTAAAGCTCTCCACAGT+GGG 0.584557 2.2:+15049951 None:intergenic
GTGGCTGAAATGGAGGGACG+CGG 0.589774 2.2:+15051774 None:intergenic
GCGGTTACTTGCAATTGAAG+AGG 0.591639 2.2:+15049899 None:intergenic
GTTGCGCAACTTGCAACCCA+AGG 0.593062 2.2:-15050281 MS.gene059901:CDS
GACACGGTGGCTGAAATGGA+GGG 0.603040 2.2:+15051768 None:intergenic
TTATCCTTCAATCTAAACAC+GGG 0.608819 2.2:+15050891 None:intergenic
TGCTCATACTCACAAAACAT+TGG 0.609078 2.2:+15050671 None:intergenic
GCGGTGGCAATGATATCAAG+TGG 0.623394 2.2:+15051796 None:intergenic
AGGCACAAAGACCTTGTAGG+AGG 0.629028 2.2:-15049482 MS.gene059901:CDS
GTAAACAGTCTCATTGACAA+AGG 0.638755 2.2:-15050146 MS.gene059901:CDS
GCTGAAATGGAGGGACGCGG+CGG 0.649712 2.2:+15051777 None:intergenic
TTTATCCTTCAATCTAAACA+CGG 0.650319 2.2:+15050890 None:intergenic
AAAGTGAAGGCGGAGACGGT+GGG 0.654962 2.2:+15051744 None:intergenic
CGGTGGCAATGATATCAAGT+GGG 0.662467 2.2:+15051797 None:intergenic
AACGAAGTAGAAAGTGAAGG+CGG 0.666662 2.2:+15051734 None:intergenic
AGGAACGAAGTAGAAAGTGA+AGG 0.668444 2.2:+15051731 None:intergenic
TTCTGCAAAATGCCTGCAGT+AGG 0.702369 2.2:-15049780 MS.gene059901:CDS
AAATTCAGTTGGTCCCACTG+TGG 0.708926 2.2:-15049964 MS.gene059901:CDS
GGAGACGGTGGGAGACACGG+TGG 0.711069 2.2:+15051755 None:intergenic
ACCACTAAAGCTCTCCACAG+TGG 0.711367 2.2:+15049950 None:intergenic
TCAACTGGCATTGACAACTG+GGG 0.722807 2.2:-15049038 MS.gene059901:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATTTTTTTTTAAAA+TGG + chr2.2:15051230-15051249 None:intergenic 0.0%
!!! TATATTTTTTCTTCTTATTT+AGG - chr2.2:15051644-15051663 MS.gene059901:intron 10.0%
!!! AAAGTAAAATTGTTTTTGTA+TGG - chr2.2:15049436-15049455 MS.gene059901:CDS 15.0%
!!! AAGTAAAATTGTTTTTGTAT+GGG - chr2.2:15049437-15049456 MS.gene059901:CDS 15.0%
!!! ATTATGGAATTAGAATATTT+TGG + chr2.2:15051047-15051066 None:intergenic 15.0%
!!! ATTATTGATTAACAAATCAA+AGG + chr2.2:15050381-15050400 None:intergenic 15.0%
!!! ATTTTTTTTTAAAATGGTTC+AGG + chr2.2:15051224-15051243 None:intergenic 15.0%
!!! TTAATGTTGATGATTAAAAT+GGG - chr2.2:15049354-15049373 MS.gene059901:intron 15.0%
!!! TTTTTTTTTAAAATGGTTCA+GGG + chr2.2:15051223-15051242 None:intergenic 15.0%
!! AAAATAAAATAAAGTCGATC+TGG - chr2.2:15049665-15049684 MS.gene059901:intron 20.0%
!! AAATTGCAAAAATTTAGACT+TGG - chr2.2:15049210-15049229 MS.gene059901:intron 20.0%
!! ATGATACAATCACTTAATTA+AGG + chr2.2:15049613-15049632 None:intergenic 20.0%
!! TATTGTAGGAATAATATAAG+CGG + chr2.2:15051004-15051023 None:intergenic 20.0%
!! TTATTTAGGAAATGTTTGTT+CGG - chr2.2:15051658-15051677 MS.gene059901:intron 20.0%
!!! AAATACTTGTTAGATTGTTT+GGG + chr2.2:15049840-15049859 None:intergenic 20.0%
!!! GTATCTAAAATTGTAAAAAG+AGG + chr2.2:15050524-15050543 None:intergenic 20.0%
!!! GTTAATGTTGATGATTAAAA+TGG - chr2.2:15049353-15049372 MS.gene059901:intron 20.0%
!!! TAAATACTTGTTAGATTGTT+TGG + chr2.2:15049841-15049860 None:intergenic 20.0%
!!! TAGTTATATTTTCCTCATTT+AGG - chr2.2:15049258-15049277 MS.gene059901:intron 20.0%
!!! TTTTAATACAAAACTAAACC+AGG + chr2.2:15050860-15050879 None:intergenic 20.0%
!!! TTTTTATTAGTTCTCTATGA+TGG + chr2.2:15049722-15049741 None:intergenic 20.0%
!!! TTTTTTTTAAAATGGTTCAG+GGG + chr2.2:15051222-15051241 None:intergenic 20.0%
! AAAACAGTGAAGAAAGATAA+AGG + chr2.2:15051329-15051348 None:intergenic 25.0%
! AAACTTAATACACCAATCAA+GGG + chr2.2:15050240-15050259 None:intergenic 25.0%
! AATTAAGGATATGTTTGGAT+TGG + chr2.2:15049598-15049617 None:intergenic 25.0%
! ACTTAAATACTCCATTTCAA+TGG + chr2.2:15049297-15049316 None:intergenic 25.0%
! AGTGAAAAGAAAGAAAAACA+AGG - chr2.2:15050304-15050323 MS.gene059901:intron 25.0%
! ATAGAAAGAAACCATTGAAA+TGG - chr2.2:15049283-15049302 MS.gene059901:intron 25.0%
! CACTTAATTAAGGATATGTT+TGG + chr2.2:15049603-15049622 None:intergenic 25.0%
! CAGAAAAATGAAGAGAAAAA+TGG + chr2.2:15050476-15050495 None:intergenic 25.0%
! GAAAAAATCCATTTAATGGA+AGG - chr2.2:15050162-15050181 MS.gene059901:intron 25.0%
! GACTTGTATCAAGTAAAATA+AGG + chr2.2:15051200-15051219 None:intergenic 25.0%
! GTGAAAAGAAAGAAAAACAA+GGG - chr2.2:15050305-15050324 MS.gene059901:intron 25.0%
! TAAACTTAATACACCAATCA+AGG + chr2.2:15050241-15050260 None:intergenic 25.0%
! TCCAGAAAAAATCCATTTAA+TGG - chr2.2:15050158-15050177 MS.gene059901:intron 25.0%
! TGTTTAGATTGAAGGATAAA+TGG - chr2.2:15049994-15050013 MS.gene059901:intron 25.0%
! TTAATTCAAATCCTACCATT+AGG + chr2.2:15050812-15050831 None:intergenic 25.0%
! TTCTTTCTATAACCTAAATG+AGG + chr2.2:15049273-15049292 None:intergenic 25.0%
! TTTATCCTTCAATCTAAACA+CGG + chr2.2:15049994-15050013 None:intergenic 25.0%
!! AGTTTTCTATCTTCTCTATA+TGG + chr2.2:15051295-15051314 None:intergenic 25.0%
!! TCCATAATTTCTAGAAAATC+AGG - chr2.2:15051059-15051078 MS.gene059901:intron 25.0%
!! TTACAATTTTAGATACCTCT+TGG - chr2.2:15050528-15050547 MS.gene059901:intron 25.0%
!! TTGATGATTAAAATGGGAAT+AGG - chr2.2:15049360-15049379 MS.gene059901:intron 25.0%
!!! ACCTGATTTTCTAGAAATTA+TGG + chr2.2:15051063-15051082 None:intergenic 25.0%
!!! AGTTTCTCTTTTTTTAATGG+AGG - chr2.2:15050095-15050114 MS.gene059901:CDS 25.0%
!!! ATGGAATTAGAATATTTTGG+AGG + chr2.2:15051044-15051063 None:intergenic 25.0%
!!! ATTAGAATATTTTGGAGGTA+AGG + chr2.2:15051039-15051058 None:intergenic 25.0%
!!! GCTAGTTTCTCTTTTTTTAA+TGG - chr2.2:15050092-15050111 MS.gene059901:CDS 25.0%
!!! TCCATTAAATGGATTTTTTC+TGG + chr2.2:15050162-15050181 None:intergenic 25.0%
AATAGATATGATCTGTGTTG+TGG - chr2.2:15050676-15050695 MS.gene059901:intron 30.0%
ATCTTCAATTGTCAAGTGAT+GGG - chr2.2:15050051-15050070 MS.gene059901:intron 30.0%
CAGTACAAACTATTCAAATC+CGG + chr2.2:15050453-15050472 None:intergenic 30.0%
CTAACAAGTATTTATGACAG+TGG - chr2.2:15049847-15049866 MS.gene059901:intron 30.0%
GTTTATGACTTCCTAGAATT+TGG - chr2.2:15050256-15050275 MS.gene059901:CDS 30.0%
TAAATTGCAAGATATCTTCG+AGG + chr2.2:15050957-15050976 None:intergenic 30.0%
TATCTTCAATTGTCAAGTGA+TGG - chr2.2:15050050-15050069 MS.gene059901:intron 30.0%
TATGGATGTGACTTATAGAT+GGG - chr2.2:15051751-15051770 MS.gene059901:CDS 30.0%
TATTTCTCATGCAGCTTATT+GGG - chr2.2:15051814-15051833 MS.gene059901:CDS 30.0%
TCTATATGGAAAACCAAGAT+AGG + chr2.2:15051281-15051300 None:intergenic 30.0%
TGTTACTCCTTAAATTCAGT+TGG - chr2.2:15050906-15050925 MS.gene059901:intron 30.0%
TTATCCTTCAATCTAAACAC+GGG + chr2.2:15049993-15050012 None:intergenic 30.0%
TTATCTACTGACATAAGCAA+TGG + chr2.2:15049564-15049583 None:intergenic 30.0%
! GTTTTTCTAATGAGCTGTAA+TGG - chr2.2:15051344-15051363 MS.gene059901:intron 30.0%
! TCTTTTCTGCATGCAAATAT+TGG - chr2.2:15050783-15050802 MS.gene059901:CDS 30.0%
!! AATTCAATCCTTTGAGTTGA+AGG + chr2.2:15050031-15050050 None:intergenic 30.0%
AAGAAAGAAGAGACACAAAC+GGG + chr2.2:15049903-15049922 None:intergenic 35.0%
AAGATAGAAAACTGAGATGC+TGG - chr2.2:15051302-15051321 MS.gene059901:intron 35.0%
AATAGGAAGTAGCTCATGTT+TGG - chr2.2:15049377-15049396 MS.gene059901:intron 35.0%
AATATTGGACACCTAATGGT+AGG - chr2.2:15050798-15050817 MS.gene059901:CDS 35.0%
ACAAGTAATTGCCCTCAATA+TGG - chr2.2:15051449-15051468 MS.gene059901:intron 35.0%
AGAAAGCAAAGTGAGCATTA+TGG + chr2.2:15050404-15050423 None:intergenic 35.0%
ATCCATTTAATGGAAGGAAG+TGG - chr2.2:15050168-15050187 MS.gene059901:intron 35.0%
ATGAGACACTTACCATATTG+AGG + chr2.2:15051464-15051483 None:intergenic 35.0%
CTAATGAGCTGTAATGGTTT+AGG - chr2.2:15051350-15051369 MS.gene059901:intron 35.0%
CTATGGATGTGACTTATAGA+TGG - chr2.2:15051750-15051769 MS.gene059901:CDS 35.0%
CTTATTGGGTTATCATCAAC+TGG - chr2.2:15051828-15051847 MS.gene059901:CDS 35.0%
GAAGAAAGAAGAGACACAAA+CGG + chr2.2:15049904-15049923 None:intergenic 35.0%
GAGTGAATAAAAAGAAGACC+TGG + chr2.2:15049180-15049199 None:intergenic 35.0%
GTAAAATTTCTGTTCCACTG+TGG + chr2.2:15051580-15051599 None:intergenic 35.0%
GTAAACAGTCTCATTGACAA+AGG - chr2.2:15050735-15050754 MS.gene059901:CDS 35.0%
GTATTTCTCATGCAGCTTAT+TGG - chr2.2:15051813-15051832 MS.gene059901:CDS 35.0%
GTTGTGTTGTGTATGTTACT+AGG - chr2.2:15050713-15050732 MS.gene059901:CDS 35.0%
TATGAGCATATTCCCTTGAT+TGG - chr2.2:15050225-15050244 MS.gene059901:intron 35.0%
TCATTGACAAAGGACAACTT+TGG - chr2.2:15050745-15050764 MS.gene059901:CDS 35.0%
TGAGACACTTACCATATTGA+GGG + chr2.2:15051463-15051482 None:intergenic 35.0%
TGCAAATATTGGACACCTAA+TGG - chr2.2:15050794-15050813 MS.gene059901:CDS 35.0%
TGCTCATACTCACAAAACAT+TGG + chr2.2:15050213-15050232 None:intergenic 35.0%
TTGGAGGTAAGGAATTTCAT+TGG + chr2.2:15051028-15051047 None:intergenic 35.0%
TTGTTCGGTAGAAATGTTGT+TGG - chr2.2:15051673-15051692 MS.gene059901:intron 35.0%
TTTCCTTGTCTGTGTTCTAA+CGG - chr2.2:15051785-15051804 MS.gene059901:CDS 35.0%
! GGAATTTCATTGGCTATTGT+AGG + chr2.2:15051018-15051037 None:intergenic 35.0%
! TTTTCTGGACATCTTTGAGT+CGG + chr2.2:15050147-15050166 None:intergenic 35.0%
!! AAATGTTGTTGGTTCATGCA+AGG - chr2.2:15051684-15051703 MS.gene059901:intron 35.0%
!! AATGTTGTTGGTTCATGCAA+GGG - chr2.2:15051685-15051704 MS.gene059901:intron 35.0%
!! CTCTTCTTTCTTCTGAAATC+TGG - chr2.2:15049911-15049930 MS.gene059901:CDS 35.0%
!! CTTGTTTTCACAAGCTATCT+TGG - chr2.2:15049466-15049485 MS.gene059901:CDS 35.0%
!! TGTAATGGTTTAGGTTGGAT+CGG - chr2.2:15051359-15051378 MS.gene059901:intron 35.0%
!! TGTTTGGATTGGCTTATTTG+AGG + chr2.2:15049587-15049606 None:intergenic 35.0%
!!! TGTTAGTTTTGCAACTTCAC+TGG - chr2.2:15051510-15051529 MS.gene059901:intron 35.0%
AACGAAGTAGAAAGTGAAGG+CGG + chr2.2:15049150-15049169 None:intergenic 40.0%
AGAAAGAAGAGACACAAACG+GGG + chr2.2:15049902-15049921 None:intergenic 40.0%
AGACTGTTTGAGAGAGCTTA+TGG + chr2.2:15049786-15049805 None:intergenic 40.0%
AGCAGAATCAGAAGTAACAC+AGG + chr2.2:15051489-15051508 None:intergenic 40.0%
AGGAACGAAGTAGAAAGTGA+AGG + chr2.2:15049153-15049172 None:intergenic 40.0%
AGTGGGACCAACTGAATTTA+AGG + chr2.2:15050916-15050935 None:intergenic 40.0%
CAAAGATGCCTTCAACTCAA+AGG - chr2.2:15050020-15050039 MS.gene059901:intron 40.0%
CAGGTGCAGTTATGAGTTAT+TGG - chr2.2:15051078-15051097 MS.gene059901:intron 40.0%
GCAATGATATCAAGTGGGTA+AGG + chr2.2:15049082-15049101 None:intergenic 40.0%
GCAGAATCAGAAGTAACACA+GGG + chr2.2:15051488-15051507 None:intergenic 40.0%
GTCCACTTCCTTCCATTAAA+TGG + chr2.2:15050173-15050192 None:intergenic 40.0%
TAAAAAGAAGACCTGGAGAC+AGG + chr2.2:15049173-15049192 None:intergenic 40.0%
TAACTTAGACCATCGCTCTA+TGG - chr2.2:15051733-15051752 MS.gene059901:CDS 40.0%
TGAGCTGTAATGGTTTAGGT+TGG - chr2.2:15051354-15051373 MS.gene059901:intron 40.0%
TTAAGGCACAAAGACCTTGT+AGG - chr2.2:15051396-15051415 MS.gene059901:intron 40.0%
TTACACTCCACTCACTTTAG+AGG + chr2.2:15050284-15050303 None:intergenic 40.0%
! CTTTAGAGGAGCCAAATTCT+AGG + chr2.2:15050270-15050289 None:intergenic 40.0%
!! ATCAACTGGCATTGACAACT+GGG - chr2.2:15051842-15051861 MS.gene059901:CDS 40.0%
!! CTTCTGAAATCTGGATGTTG+CGG - chr2.2:15049920-15049939 MS.gene059901:CDS 40.0%
!!! CTTTTTTACCACCTCCTACA+AGG + chr2.2:15051413-15051432 None:intergenic 40.0%
AAATTCAGTTGGTCCCACTG+TGG - chr2.2:15050917-15050936 MS.gene059901:intron 45.0%
AAGTCACATCCATAGAGCGA+TGG + chr2.2:15051745-15051764 None:intergenic 45.0%
AGTTATCACGAGACAGTGTG+TGG - chr2.2:15051537-15051556 MS.gene059901:intron 45.0%
CAAGAGAGACATGTGAGTCA+AGG + chr2.2:15049953-15049972 None:intergenic 45.0%
CAATAAGCACTCTCACCAAG+AGG + chr2.2:15050546-15050565 None:intergenic 45.0%
CAGGCATGACAGAACAAACT+TGG + chr2.2:15050841-15050860 None:intergenic 45.0%
CCAAGATAGGAATCCAAGAG+AGG + chr2.2:15051268-15051287 None:intergenic 45.0%
CCTCTCTTGGATTCCTATCT+TGG - chr2.2:15051265-15051284 MS.gene059901:intron 45.0%
CGGTGGCAATGATATCAAGT+GGG + chr2.2:15049087-15049106 None:intergenic 45.0%
CTCACAAAACATTGGCAGCA+AGG + chr2.2:15050205-15050224 None:intergenic 45.0%
GCGGTTACTTGCAATTGAAG+AGG + chr2.2:15050985-15051004 None:intergenic 45.0%
GGTTCATGCAAGGGTTATGT+CGG - chr2.2:15051694-15051713 MS.gene059901:intron 45.0%
GTTCATGCAAGGGTTATGTC+GGG - chr2.2:15051695-15051714 MS.gene059901:intron 45.0%
TCAAACGTACTTGCCTCTCT+TGG - chr2.2:15051252-15051271 MS.gene059901:intron 45.0%
TGCTCCCGTGTTTAGATTGA+AGG - chr2.2:15049986-15050005 MS.gene059901:intron 45.0%
TTCTGCAAAATGCCTGCAGT+AGG - chr2.2:15051101-15051120 MS.gene059901:intron 45.0%
TTGCAAACCGGTGACAGAAA+TGG + chr2.2:15049052-15049071 None:intergenic 45.0%
! ATGCTTCTGATTAGCCACAG+TGG - chr2.2:15051563-15051582 MS.gene059901:intron 45.0%
! CAAGTTTGTTCTGTCATGCC+TGG - chr2.2:15050839-15050858 MS.gene059901:CDS 45.0%
!! ATTTCTGTCACCGGTTTGCA+AGG - chr2.2:15049051-15049070 MS.gene059901:CDS 45.0%
!! CATCAACTGGCATTGACAAC+TGG - chr2.2:15051841-15051860 MS.gene059901:CDS 45.0%
!! TCAACTGGCATTGACAACTG+GGG - chr2.2:15051843-15051862 MS.gene059901:CDS 45.0%
!! TTTGGCTCCTCTAAAGTGAG+TGG - chr2.2:15050274-15050293 MS.gene059901:CDS 45.0%
!!! CGGTTGCGGTGTTTGTTTTA+AGG - chr2.2:15051379-15051398 MS.gene059901:intron 45.0%
AACCGGTGACAGAAATGGCT+TGG + chr2.2:15049047-15049066 None:intergenic 50.0%
ACCACTAAAGCTCTCCACAG+TGG + chr2.2:15050934-15050953 None:intergenic 50.0%
ACCGGTGACAGAAATGGCTT+GGG + chr2.2:15049046-15049065 None:intergenic 50.0%
AGGCACAAAGACCTTGTAGG+AGG - chr2.2:15051399-15051418 MS.gene059901:intron 50.0%
CACAAAGACCTTGTAGGAGG+TGG - chr2.2:15051402-15051421 MS.gene059901:intron 50.0%
CCACGACAAAAGCTTGCCTT+GGG + chr2.2:15050619-15050638 None:intergenic 50.0%
CCACTAAAGCTCTCCACAGT+GGG + chr2.2:15050933-15050952 None:intergenic 50.0%
GCACCGTTAGAACACAGACA+AGG + chr2.2:15051791-15051810 None:intergenic 50.0%
GCGGTGGCAATGATATCAAG+TGG + chr2.2:15049088-15049107 None:intergenic 50.0%
GTAGAAAGTGAAGGCGGAGA+CGG + chr2.2:15049144-15049163 None:intergenic 50.0%
GTTGCTCGCTTCAAATGAGC+CGG - chr2.2:15050431-15050450 MS.gene059901:intron 50.0%
TAAGGACCCACCTTGCAAAC+CGG + chr2.2:15049064-15049083 None:intergenic 50.0%
TCTACTTCGTTCCTGTCTCC+AGG - chr2.2:15049159-15049178 MS.gene059901:intron 50.0%
! CAAGGCAAGCTTTTGTCGTG+GGG - chr2.2:15050618-15050637 MS.gene059901:intron 50.0%
! CCAAGGCAAGCTTTTGTCGT+GGG - chr2.2:15050617-15050636 MS.gene059901:intron 50.0%
! GGTGCGTCAGGAGCAATTTT+TGG - chr2.2:15051122-15051141 MS.gene059901:intron 50.0%
!! GGTTTAGGTTGGATCGGTTG+CGG - chr2.2:15051365-15051384 MS.gene059901:intron 50.0%
AAAGTGAAGGCGGAGACGGT+GGG + chr2.2:15049140-15049159 None:intergenic 55.0%
AGACACGGTGGCTGAAATGG+AGG + chr2.2:15049117-15049136 None:intergenic 55.0%
CCCACGACAAAAGCTTGCCT+TGG + chr2.2:15050620-15050639 None:intergenic 55.0%
GACACGGTGGCTGAAATGGA+GGG + chr2.2:15049116-15049135 None:intergenic 55.0%
GCCCAAGCCATTTCTGTCAC+CGG - chr2.2:15049042-15049061 MS.gene059901:CDS 55.0%
GTTGCGCAACTTGCAACCCA+AGG - chr2.2:15050600-15050619 MS.gene059901:intron 55.0%
TGAGTCGGCATTTCCAGAGC+TGG + chr2.2:15050132-15050151 None:intergenic 55.0%
TGTCGTGGGGAGCAAAGGTA+AGG - chr2.2:15050631-15050650 MS.gene059901:intron 55.0%
! CCCAAGGCAAGCTTTTGTCG+TGG - chr2.2:15050616-15050635 MS.gene059901:intron 55.0%
! CCCACTGTGGAGAGCTTTAG+TGG - chr2.2:15050930-15050949 MS.gene059901:intron 55.0%
! GCATTTCCAGAGCTGGCTTC+AGG + chr2.2:15050125-15050144 None:intergenic 55.0%
! GCTTTTGTCGTGGGGAGCAA+AGG - chr2.2:15050626-15050645 MS.gene059901:intron 55.0%
!! CTGTCACCGGTTTGCAAGGT+GGG - chr2.2:15049055-15049074 MS.gene059901:CDS 55.0%
!! TCTGTCACCGGTTTGCAAGG+TGG - chr2.2:15049054-15049073 MS.gene059901:CDS 55.0%
ATGCCTGCAGTAGGTGCGTC+AGG - chr2.2:15051110-15051129 MS.gene059901:intron 60.0%
GAAAGTGAAGGCGGAGACGG+TGG + chr2.2:15049141-15049160 None:intergenic 60.0%
GGAAGACCTGAAGCCAGCTC+TGG - chr2.2:15050116-15050135 MS.gene059901:CDS 60.0%
GGGAGACACGGTGGCTGAAA+TGG + chr2.2:15049120-15049139 None:intergenic 60.0%
GTGGCTGAAATGGAGGGACG+CGG + chr2.2:15049110-15049129 None:intergenic 60.0%
GCTCCTGACGCACCTACTGC+AGG + chr2.2:15051116-15051135 None:intergenic 65.0%
GCTGAAATGGAGGGACGCGG+CGG + chr2.2:15049107-15049126 None:intergenic 65.0%
GAAATGGAGGGACGCGGCGG+TGG + chr2.2:15049104-15049123 None:intergenic 70.0%
GGAGACGGTGGGAGACACGG+TGG + chr2.2:15049129-15049148 None:intergenic 70.0%
GGCGGAGACGGTGGGAGACA+CGG + chr2.2:15049132-15049151 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 15049034 15051869 15049034 ID=MS.gene059901
chr2.2 mRNA 15049034 15051869 15049034 ID=MS.gene059901.t1;Parent=MS.gene059901
chr2.2 exon 15051723 15051869 15051723 ID=MS.gene059901.t1.exon1;Parent=MS.gene059901.t1
chr2.2 CDS 15051723 15051869 15051723 ID=cds.MS.gene059901.t1;Parent=MS.gene059901.t1
chr2.2 exon 15050684 15050922 15050684 ID=MS.gene059901.t1.exon2;Parent=MS.gene059901.t1
chr2.2 CDS 15050684 15050922 15050684 ID=cds.MS.gene059901.t1;Parent=MS.gene059901.t1
chr2.2 exon 15050256 15050310 15050256 ID=MS.gene059901.t1.exon3;Parent=MS.gene059901.t1
chr2.2 CDS 15050256 15050310 15050256 ID=cds.MS.gene059901.t1;Parent=MS.gene059901.t1
chr2.2 exon 15050088 15050168 15050088 ID=MS.gene059901.t1.exon4;Parent=MS.gene059901.t1
chr2.2 CDS 15050088 15050168 15050088 ID=cds.MS.gene059901.t1;Parent=MS.gene059901.t1
chr2.2 exon 15049907 15050003 15049907 ID=MS.gene059901.t1.exon5;Parent=MS.gene059901.t1
chr2.2 CDS 15049907 15050003 15049907 ID=cds.MS.gene059901.t1;Parent=MS.gene059901.t1
chr2.2 exon 15049755 15049822 15049755 ID=MS.gene059901.t1.exon6;Parent=MS.gene059901.t1
chr2.2 CDS 15049755 15049822 15049755 ID=cds.MS.gene059901.t1;Parent=MS.gene059901.t1
chr2.2 exon 15049433 15049531 15049433 ID=MS.gene059901.t1.exon7;Parent=MS.gene059901.t1
chr2.2 CDS 15049433 15049531 15049433 ID=cds.MS.gene059901.t1;Parent=MS.gene059901.t1
chr2.2 exon 15049034 15049075 15049034 ID=MS.gene059901.t1.exon8;Parent=MS.gene059901.t1
chr2.2 CDS 15049034 15049075 15049034 ID=cds.MS.gene059901.t1;Parent=MS.gene059901.t1
Gene Sequence

>MS.gene059901

ATGATTATGCCCAAGCCATTTCTGTCACCGGTTTGCAAGGTGGGTCCTTACCCACTTGATATCATTGCCACCGCCGCGTCCCTCCATTTCAGCCACCGTGTCTCCCACCGTCTCCGCCTTCACTTTCTACTTCGTTCCTGTCTCCAGGTCTTCTTTTTATTCACTCTTTTTACTACAAATTGCAAAAATTTAGACTTGGTTTTTTGTTGAAAATTTTCAAATTTTAGTTATATTTTCCTCATTTAGGTTATAGAAAGAAACCATTGAAATGGAGTATTTAAGTATCATATGTTGCTTTCATCATATCAATCATAGTGTAGTTAATGTTGATGATTAAAATGGGAATAGGAAGTAGCTCATGTTTGGATAAACAACTCAATTAAGCGCTTATAAATATAAAATAAAGTAAAATTGTTTTTGTATGGGTTATAACTTGTTTTCACAAGCTATCTTGGAGAGTTTATGAAAATAAGTTGAATGCAGCTTATGAACATGTCATAAGTTGTTCAAAGTTTTAAACAAACTCGCCATTGCTTATGTCAGTAGATAACCTCAAATAAGCCAATCCAAACATATCCTTAATTAAGTGATTGTATCATAATTGCTTATGCATGAGCGATTTCTGTAACAAAAAATAAAATAAAGTCGATCTGGTTTCATGTAAGCTATAAGTTGTTTTCATAAGCCATCATAGAGAACTAATAAAAATAAGCTGAAAACAGCTTATGAACATATCATAAGTTGTCTCTCCATAAGCTCTCTCAAACAGTCTCACAAGTGTTTATGTTAGTTTCATAAGCTCTCCCAAACAATCTAACAAGTATTTATGACAGTGGATAAGCTCAAATAAATTAATTAAAATATGCCCCGTTTGTGTCTCTTCTTTCTTCTGAAATCTGGATGTTGCGGCAGCATTCCTTGACTCACATGTCTCTCTTGTTGAACAGAAACTTGCTCCCGTGTTTAGATTGAAGGATAAATGGTGTCAAAGATGCCTTCAACTCAAAGGATTGAATTATCTTCAATTGTCAAGTGATGGGTTGACTTCTGCATGTTCAGCTAGTTTCTCTTTTTTTAATGGAGGAAGACCTGAAGCCAGCTCTGGAAATGCCGACTCAAAGATGTCCAGAAAAAATCCATTTAATGGAAGGAAGTGGACAAATATTCTCCTTGCTGCCAATGTTTTGTGAGTATGAGCATATTCCCTTGATTGGTGTATTAAGTTTATGACTTCCTAGAATTTGGCTCCTCTAAAGTGAGTGGAGTGTAAAGTGAAAAGAAAGAAAAACAAGGGTTGTTATTTCAACGAACTCATGATTTGTTATGATATACTTGCAGTATTGACCTTTGATTTGTTAATCAATAATCCATAATGCTCACTTTGCTTTCTAAAATGAGTTGCTCGCTTCAAATGAGCCGGATTTGAATAGTTTGTACTGCCATTTTTCTCTTCATTTTTCTGTTTCTAGTTCTATTAGCTGATATTACCTCTTTTTACAATTTTAGATACCTCTTGGTGAGAGTGCTTATTGATTATTATTTACTGTTTGTTTACACAGATTTTATGTTGCGCAACTTGCAACCCAAGGCAAGCTTTTGTCGTGGGGAGCAAAGGTAAGGTTGCAATTAAGAATCTTTTATGAATAGATATGATCTGTGTTGTGGATCGTTACATGTTAGTTGTGTTGTGTATGTTACTAGGTAAACAGTCTCATTGACAAAGGACAACTTTGGAGACTTGTTACATCTTCTTTTCTGCATGCAAATATTGGACACCTAATGGTAGGATTTGAATTAAATTGTTCCAAGTTTGTTCTGTCATGCCTGGTTTAGTTTTGTATTAAAATTACTACAAATTCTCTGCAGATAAATTGTTACTCCTTAAATTCAGTTGGTCCCACTGTGGAGAGCTTTAGTGGTCCTCGAAGATATCTTGCAATTTACTTTGCCTCTTCAATTGCAAGTAACCGCTTATATTATTCCTACAATAGCCAATGAAATTCCTTACCTCCAAAATATTCTAATTCCATAATTTCTAGAAAATCAGGTGCAGTTATGAGTTATTGGTTCTGCAAAATGCCTGCAGTAGGTGCGTCAGGAGCAATTTTTGGACTAGTGAGTTCTCTTATTATTTTATTTGTTACAAGTTTGCTTAATCATCTGCCTTATTTTACTTGATACAAGTCCCCTGAACCATTTTAAAAAAAAATAAAAAAAATCAAACGTACTTGCCTCTCTTGGATTCCTATCTTGGTTTTCCATATAGAGAAGATAGAAAACTGAGATGCTGGTCCTTTATCTTTCTTCACTGTTTTTCTAATGAGCTGTAATGGTTTAGGTTGGATCGGTTGCGGTGTTTGTTTTAAGGCACAAAGACCTTGTAGGAGGTGGTAAAAAAGATCTGCAGCACATTGCACAAGTAATTGCCCTCAATATGGTAAGTGTCTCATTCCCTGTGTTACTTCTGATTCTGCTTTGTTAGTTTTGCAACTTCACTGGATTGAGTTATCACGAGACAGTGTGTGGTACATGCTTCTGATTAGCCACAGTGGAACAGAAATTTTACAGTAATTTTCTGCATACTAGTGCTTGTATGTTATTATGTTATTATATATTTTTTCTTCTTATTTAGGAAATGTTTGTTCGGTAGAAATGTTGTTGGTTCATGCAAGGGTTATGTCGGGAACTTTTTCTACTTTTAACTTAGACCATCGCTCTATGGATGTGACTTATAGATGGGATACTGTTTACTTTCCTTGTCTGTGTTCTAACGGTGCAAGTATTTCTCATGCAGCTTATTGGGTTATCATCAACTGGCATTGACAACTGGGGACAT
Protein sequence

>MS.gene059901.t1

MIMPKPFLSPVCKVGPYPLDIIATAASLHFSHRVSHRLRLHFLLRSCLQKLAPVFRLKDKWCQRCLQLKGLNYLQLSSDGLTSACSASFSFFNGGRPEASSGNADSKMSRKNPFNGRKWTNILLAANVLFYVAQLATQGKLLSWGAKVNSLIDKGQLWRLVTSSFLHANIGHLMINCYSLNSVGPTVESFSGPRRYLAIYFASSIASAVMSYWFCKMPAVGASGAIFGLVGSVAVFVLRHKDLVGGGKKDLQHIAQVIALNMLIGLSSTGIDNWGH