Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28708.t1 | XP_013457316.1 | 92.2 | 437 | 32 | 2 | 1 | 435 | 1 | 437 | 7.60E-243 | 849.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28708.t1 | A0A072UNX5 | 92.2 | 437 | 32 | 2 | 1 | 435 | 1 | 437 | 5.5e-243 | 849.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050654 | MS.gene28708 | 0.801303 | 9.60E-49 | -1.69E-46 |
| MS.gene054892 | MS.gene28708 | 0.807985 | 3.87E-50 | -1.69E-46 |
| MS.gene054893 | MS.gene28708 | 0.815194 | 1.05E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28708.t1 | MTR_4g094548 | 92.220 | 437 | 32 | 2 | 1 | 435 | 1 | 437 | 0.0 | 841 |
| MS.gene28708.t1 | MTR_4g094555 | 88.276 | 435 | 51 | 0 | 1 | 435 | 1 | 435 | 0.0 | 805 |
| MS.gene28708.t1 | MTR_4g094570 | 82.984 | 429 | 73 | 0 | 1 | 429 | 1 | 429 | 0.0 | 758 |
| MS.gene28708.t1 | MTR_4g094550 | 82.517 | 429 | 74 | 1 | 1 | 428 | 1 | 429 | 0.0 | 751 |
| MS.gene28708.t1 | MTR_6g048350 | 81.439 | 431 | 80 | 0 | 1 | 431 | 1 | 431 | 0.0 | 751 |
| MS.gene28708.t1 | MTR_4g094562 | 81.967 | 427 | 69 | 1 | 1 | 427 | 1 | 419 | 0.0 | 731 |
| MS.gene28708.t1 | MTR_4g094560 | 81.609 | 435 | 70 | 1 | 1 | 435 | 1 | 425 | 0.0 | 731 |
| MS.gene28708.t1 | MTR_6g048310 | 81.647 | 425 | 73 | 2 | 3 | 427 | 2 | 421 | 0.0 | 714 |
| MS.gene28708.t1 | MTR_4g094565 | 67.366 | 429 | 59 | 2 | 1 | 429 | 1 | 348 | 0.0 | 564 |
| MS.gene28708.t1 | MTR_2g030470 | 61.136 | 440 | 156 | 5 | 3 | 435 | 6 | 437 | 0.0 | 552 |
| MS.gene28708.t1 | MTR_2g030470 | 61.916 | 407 | 146 | 3 | 7 | 412 | 424 | 822 | 0.0 | 535 |
| MS.gene28708.t1 | MTR_2g030460 | 59.524 | 420 | 158 | 4 | 1 | 416 | 1 | 412 | 0.0 | 541 |
| MS.gene28708.t1 | MTR_1g052640 | 60.143 | 419 | 155 | 3 | 1 | 415 | 1 | 411 | 0.0 | 541 |
| MS.gene28708.t1 | MTR_0083s0100 | 62.113 | 388 | 138 | 2 | 29 | 415 | 32 | 411 | 0.0 | 530 |
| MS.gene28708.t1 | MTR_4g094562 | 82.867 | 286 | 49 | 0 | 1 | 286 | 1 | 286 | 1.91e-179 | 504 |
| MS.gene28708.t1 | MTR_2g030480 | 59.569 | 418 | 138 | 4 | 1 | 415 | 1 | 390 | 2.01e-179 | 506 |
| MS.gene28708.t1 | MTR_4g094565 | 75.874 | 286 | 41 | 1 | 1 | 286 | 1 | 258 | 1.59e-152 | 435 |
| MS.gene28708.t1 | MTR_2g030460 | 57.895 | 342 | 132 | 4 | 1 | 338 | 1 | 334 | 1.65e-150 | 431 |
| MS.gene28708.t1 | MTR_1g052640 | 57.895 | 342 | 132 | 3 | 1 | 338 | 1 | 334 | 5.40e-147 | 422 |
| MS.gene28708.t1 | MTR_8g039300 | 42.243 | 419 | 222 | 6 | 1 | 412 | 1 | 406 | 2.37e-126 | 372 |
| MS.gene28708.t1 | MTR_6g090090 | 42.619 | 420 | 211 | 7 | 1 | 413 | 27 | 423 | 3.52e-124 | 367 |
| MS.gene28708.t1 | MTR_6g089930 | 40.380 | 421 | 231 | 6 | 1 | 414 | 1 | 408 | 2.02e-122 | 362 |
| MS.gene28708.t1 | MTR_1g052640 | 57.931 | 290 | 110 | 3 | 1 | 286 | 1 | 282 | 4.68e-122 | 357 |
| MS.gene28708.t1 | MTR_3g035040 | 41.568 | 421 | 226 | 6 | 1 | 414 | 1 | 408 | 1.53e-121 | 360 |
| MS.gene28708.t1 | MTR_1g035220 | 40.609 | 394 | 188 | 9 | 1 | 384 | 1 | 358 | 3.11e-105 | 316 |
| MS.gene28708.t1 | MTR_1g062750 | 42.678 | 239 | 122 | 4 | 58 | 287 | 2 | 234 | 8.70e-70 | 221 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28708.t1 | AT5G61820 | 54.688 | 448 | 173 | 8 | 1 | 426 | 2 | 441 | 2.14e-167 | 479 |
| MS.gene28708.t1 | AT5G61820 | 54.688 | 448 | 173 | 8 | 1 | 426 | 2 | 441 | 2.14e-167 | 479 |
Find 89 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGGTCCTAGCTCGAATTT+AGG | 0.186947 | 4.3:-19308686 | None:intergenic |
| AGAGATTCCAGAAGGGTTTA+AGG | 0.204067 | 4.3:+19309051 | MS.gene28708:CDS |
| ACCTAAGATACACTGTAAAA+TGG | 0.215785 | 4.3:+19309284 | MS.gene28708:CDS |
| CATTTGTCCTTAAACCCTTC+TGG | 0.260473 | 4.3:-19309058 | None:intergenic |
| AACCCTTCTGGAATCTCTTC+AGG | 0.285933 | 4.3:-19309046 | None:intergenic |
| TGTCGCTGTTCCTCGTGTTT+CGG | 0.325216 | 4.3:-19308987 | None:intergenic |
| GGAATTGGATCAACTCTATA+TGG | 0.325668 | 4.3:+19309857 | MS.gene28708:CDS |
| CATCAGCATTCAGGTGGAAT+TGG | 0.339156 | 4.3:+19309842 | MS.gene28708:CDS |
| GCTGTTGCTCATCAGCATTC+AGG | 0.347232 | 4.3:+19309833 | MS.gene28708:CDS |
| TAAGTTTCATGGAGAGGTAT+AGG | 0.349623 | 4.3:-19308806 | None:intergenic |
| ATGAAACTTATCTTCATCAT+TGG | 0.351373 | 4.3:+19308819 | MS.gene28708:CDS |
| AATGATGAAGATAAGTTTCA+TGG | 0.363015 | 4.3:-19308817 | None:intergenic |
| ACAGATATTCCGGATCCTTT+CGG | 0.377714 | 4.3:+19309007 | MS.gene28708:CDS |
| CTTAGGTAGAGACTTCTCTT+TGG | 0.385709 | 4.3:-19309268 | None:intergenic |
| CAGGTCCTAGCTCGAATTTA+GGG | 0.385995 | 4.3:-19308685 | None:intergenic |
| AATGTTACAGTCGATGAATA+TGG | 0.391140 | 4.3:+19309160 | MS.gene28708:CDS |
| ACACTGTAAAATGGGTTGAT+TGG | 0.392079 | 4.3:+19309293 | MS.gene28708:CDS |
| TCATTTCCATTTCCGTAACT+TGG | 0.400782 | 4.3:-19310901 | None:intergenic |
| TATCTTCATCATTGGGCTGT+TGG | 0.404983 | 4.3:+19308827 | MS.gene28708:CDS |
| TCTATACCAAGTTACGGAAA+TGG | 0.405805 | 4.3:+19310895 | MS.gene28708:CDS |
| AAGGAGCACACTGGAGTAAT+GGG | 0.409814 | 4.3:+19311039 | MS.gene28708:CDS |
| ATCTCTATGCCGAAAGGATC+CGG | 0.410784 | 4.3:-19309016 | None:intergenic |
| AGGAACAGCGACAGATATTC+CGG | 0.412247 | 4.3:+19308997 | MS.gene28708:CDS |
| CAGAAGGGTTTAAGGACAAA+TGG | 0.414440 | 4.3:+19309059 | MS.gene28708:CDS |
| ATGAATATGGAAGGTCTATT+AGG | 0.414925 | 4.3:+19309173 | MS.gene28708:CDS |
| AATCCACAGTACTTTGGCCT+TGG | 0.416748 | 4.3:+19308962 | MS.gene28708:CDS |
| CCTAAATTCGAGCTAGGACC+TGG | 0.421913 | 4.3:+19308686 | MS.gene28708:CDS |
| TGAAACTTATCTTCATCATT+GGG | 0.422361 | 4.3:+19308820 | MS.gene28708:CDS |
| CCTAAGATACACTGTAAAAT+GGG | 0.425849 | 4.3:+19309285 | MS.gene28708:CDS |
| CACTGTAAAATGGGTTGATT+GGG | 0.431561 | 4.3:+19309294 | MS.gene28708:CDS |
| CATGTTCTTGTGAGGAATAA+TGG | 0.432275 | 4.3:+19308920 | MS.gene28708:CDS |
| CGCGGCGCAGAGGATAAGTT+AGG | 0.433194 | 4.3:+19309109 | MS.gene28708:CDS |
| AAACCATCAGATGATTCAAA+AGG | 0.440464 | 4.3:+19309370 | MS.gene28708:CDS |
| TCTATTAGGTCAGATTATAA+AGG | 0.452313 | 4.3:+19309187 | MS.gene28708:CDS |
| GAATGTCTAAAGTGTTGGTA+TGG | 0.455334 | 4.3:-19311093 | None:intergenic |
| ACAAATCTCCCACTACAAAC+TGG | 0.456873 | 4.3:+19309794 | MS.gene28708:CDS |
| GATCCTTTCGGCATAGAGAT+AGG | 0.457809 | 4.3:+19309019 | MS.gene28708:CDS |
| CAAGGAGCACACTGGAGTAA+TGG | 0.460467 | 4.3:+19311038 | MS.gene28708:CDS |
| TTAAGTGCTATATGCCCTCT+TGG | 0.461718 | 4.3:-19308746 | None:intergenic |
| AATGAGACAGGCTACATTGT+AGG | 0.464236 | 4.3:+19310931 | MS.gene28708:CDS |
| AGAGATCATAATGAGAGAAA+TGG | 0.477517 | 4.3:+19309752 | MS.gene28708:CDS |
| GGAGTTGTTCTGCCACCAAT+AGG | 0.477987 | 4.3:-19311071 | None:intergenic |
| GGTTCTGTCAAGATAGTTGA+TGG | 0.483218 | 4.3:+19310979 | MS.gene28708:CDS |
| TACGGAAATGGAAATGAAGC+TGG | 0.483318 | 4.3:+19310907 | MS.gene28708:CDS |
| TGTTCTTCTATACCAAGTTA+CGG | 0.501586 | 4.3:+19310889 | MS.gene28708:CDS |
| AATGTCAATCCACAGTACTT+TGG | 0.509452 | 4.3:+19308956 | MS.gene28708:CDS |
| TATCTATTGATAACTGATCC+AGG | 0.514983 | 4.3:-19308704 | None:intergenic |
| TTGTCCCCTAAATTCGAGCT+AGG | 0.516788 | 4.3:+19308680 | MS.gene28708:CDS |
| TTATACACAGTGTAAATTGA+AGG | 0.518284 | 4.3:+19309231 | MS.gene28708:CDS |
| TTCCTCGTGTTTCGGATCCA+AGG | 0.522728 | 4.3:-19308979 | None:intergenic |
| TCAACTATCTTGACAGAACC+TGG | 0.529655 | 4.3:-19310976 | None:intergenic |
| ATCAACATGTGGTTTGTACA+TGG | 0.535755 | 4.3:+19308557 | None:intergenic |
| AGGGTTTAAGGACAAATGGT+TGG | 0.537935 | 4.3:+19309063 | MS.gene28708:CDS |
| TGGATCAACTCTATATGGAC+AGG | 0.542632 | 4.3:+19309862 | MS.gene28708:CDS |
| GCGGCGCAGAGGATAAGTTA+GGG | 0.545390 | 4.3:+19309110 | MS.gene28708:CDS |
| AGCAGCAGCAAGGAGCACAC+TGG | 0.545541 | 4.3:+19311030 | MS.gene28708:CDS |
| TTCACAAAAGAAGTTGAGCA+TGG | 0.556340 | 4.3:-19308626 | None:intergenic |
| AATGAAGCTGGAAATGAGAC+AGG | 0.556363 | 4.3:+19310919 | MS.gene28708:CDS |
| ATTAGGTCAGATTATAAAGG+AGG | 0.558914 | 4.3:+19309190 | MS.gene28708:CDS |
| TCCACTTGTTATCCTCGACC+AGG | 0.565783 | 4.3:+19310958 | MS.gene28708:CDS |
| GAGTGGAATGTCTAAAGTGT+TGG | 0.571391 | 4.3:-19311098 | None:intergenic |
| ACACAGTGTAAATTGAAGGA+AGG | 0.579319 | 4.3:+19309235 | MS.gene28708:CDS |
| TCGATTATATATATCTTCAC+AGG | 0.579991 | 4.3:-19309331 | None:intergenic |
| AATGTCTAAAGTGTTGGTAT+GGG | 0.605559 | 4.3:-19311092 | None:intergenic |
| CATAGCCACCAGTTTGTAGT+GGG | 0.607686 | 4.3:-19309802 | None:intergenic |
| ACATAGCCACCAGTTTGTAG+TGG | 0.611101 | 4.3:-19309803 | None:intergenic |
| GCTGAAGTAGTTGATGATGC+TGG | 0.614547 | 4.3:+19308779 | MS.gene28708:CDS |
| ACACAGAAAATGATAGCCAC+AGG | 0.616920 | 4.3:+19308879 | MS.gene28708:CDS |
| CAGAGCTTTGTAGCATCCTG+TGG | 0.622635 | 4.3:-19308895 | None:intergenic |
| ATCTTGACAGAACCTGGTCG+AGG | 0.624814 | 4.3:-19310970 | None:intergenic |
| TTACCTATCTCTATGCCGAA+AGG | 0.626845 | 4.3:-19309022 | None:intergenic |
| GAACTCGGATCATGATTGCA+AGG | 0.629809 | 4.3:+19309396 | MS.gene28708:CDS |
| TGAAGATAAGTTTCATGGAG+AGG | 0.630553 | 4.3:-19308812 | None:intergenic |
| GTCTAACTACAGCAGCAGCA+AGG | 0.633861 | 4.3:+19311020 | MS.gene28708:CDS |
| GTTGCTCATCAGCATTCAGG+TGG | 0.638404 | 4.3:+19309836 | MS.gene28708:CDS |
| AATCCTGAAGAGATTCCAGA+AGG | 0.639599 | 4.3:+19309043 | MS.gene28708:CDS |
| GCTCTGATCATGTTCTTGTG+AGG | 0.641080 | 4.3:+19308912 | MS.gene28708:CDS |
| ACCTGGTCGAGGATAACAAG+TGG | 0.642662 | 4.3:-19310959 | None:intergenic |
| TTACAGTCGATGAATATGGA+AGG | 0.647732 | 4.3:+19309164 | MS.gene28708:CDS |
| AAAAGAAGTTGAGCATGGTG+TGG | 0.657017 | 4.3:-19308621 | None:intergenic |
| TGATTCAAAAGGATTGAACT+CGG | 0.658284 | 4.3:+19309381 | MS.gene28708:CDS |
| GGCCTTGGATCCGAAACACG+AGG | 0.659961 | 4.3:+19308977 | MS.gene28708:CDS |
| ATCCTGAAGAGATTCCAGAA+GGG | 0.660203 | 4.3:+19309044 | MS.gene28708:CDS |
| AGGTCCTAGCTCGAATTTAG+GGG | 0.663017 | 4.3:-19308684 | None:intergenic |
| ATGGTTGTGTTAATGTGATG+AGG | 0.664654 | 4.3:+19309771 | MS.gene28708:CDS |
| GATCCAAGGCCAAAGTACTG+TGG | 0.668147 | 4.3:-19308965 | None:intergenic |
| TATTGATACGCGCGGCGCAG+AGG | 0.680676 | 4.3:+19309099 | MS.gene28708:CDS |
| AATCTCCCACTACAAACTGG+TGG | 0.686412 | 4.3:+19309797 | MS.gene28708:CDS |
| GTTCATGCTATTGATACGCG+CGG | 0.698908 | 4.3:+19309091 | MS.gene28708:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTCTCTTATATTC+TGG | - | chr4.3:19310178-19310197 | None:intergenic | 15.0% |
| !! | AAAATAGTCAGATATAAACT+TGG | + | chr4.3:19310193-19310212 | MS.gene28708:intron | 20.0% |
| !! | TACACCAAAATAACTTAAAA+GGG | + | chr4.3:19310337-19310356 | MS.gene28708:intron | 20.0% |
| !! | TACATTCATTGTTAAATACT+TGG | + | chr4.3:19309906-19309925 | MS.gene28708:intron | 20.0% |
| !! | TTAACTGTAAAATATAACAC+TGG | + | chr4.3:19309651-19309670 | MS.gene28708:intron | 20.0% |
| !!! | ATCTGTTTACTTTTGTATTA+GGG | + | chr4.3:19310764-19310783 | MS.gene28708:intron | 20.0% |
| !!! | CAAACGTTTTAATTTACTAA+TGG | + | chr4.3:19310546-19310565 | MS.gene28708:intron | 20.0% |
| !!! | TATCTGTTTACTTTTGTATT+AGG | + | chr4.3:19310763-19310782 | MS.gene28708:intron | 20.0% |
| ! | AACACAAGAACAATATAACA+TGG | + | chr4.3:19310004-19310023 | MS.gene28708:intron | 25.0% |
| ! | AATGATGAAGATAAGTTTCA+TGG | - | chr4.3:19308820-19308839 | None:intergenic | 25.0% |
| ! | ATAAGTTAAACATTGTGTAG+TGG | + | chr4.3:19310817-19310836 | MS.gene28708:intron | 25.0% |
| ! | ATATTGTTCTTGTGTTCTAA+GGG | - | chr4.3:19310000-19310019 | None:intergenic | 25.0% |
| ! | ATCAAACATTAGACTAAGTT+CGG | - | chr4.3:19309561-19309580 | None:intergenic | 25.0% |
| ! | ATGAAACTTATCTTCATCAT+TGG | + | chr4.3:19308819-19308838 | MS.gene28708:CDS | 25.0% |
| ! | CTACACCAAAATAACTTAAA+AGG | + | chr4.3:19310336-19310355 | MS.gene28708:intron | 25.0% |
| ! | CTTCATTCAGAAAGTAATAA+TGG | + | chr4.3:19310422-19310441 | MS.gene28708:intron | 25.0% |
| ! | TATATTGTTCTTGTGTTCTA+AGG | - | chr4.3:19310001-19310020 | None:intergenic | 25.0% |
| ! | TCGATTATATATATCTTCAC+AGG | - | chr4.3:19309334-19309353 | None:intergenic | 25.0% |
| ! | TCTATTAGGTCAGATTATAA+AGG | + | chr4.3:19309187-19309206 | MS.gene28708:CDS | 25.0% |
| ! | TGAAACTTATCTTCATCATT+GGG | + | chr4.3:19308820-19308839 | MS.gene28708:CDS | 25.0% |
| ! | TTACTAATGGTGTGAATTAT+TGG | + | chr4.3:19310559-19310578 | MS.gene28708:intron | 25.0% |
| ! | TTATACACAGTGTAAATTGA+AGG | + | chr4.3:19309231-19309250 | MS.gene28708:CDS | 25.0% |
| !! | ATTCAGAAAGTAATAATGGA+AGG | + | chr4.3:19310426-19310445 | MS.gene28708:intron | 25.0% |
| !! | TGTTTTTCCTAACAGTTAAA+AGG | - | chr4.3:19309956-19309975 | None:intergenic | 25.0% |
| !! | TTCAGAAAGTAATAATGGAA+GGG | + | chr4.3:19310427-19310446 | MS.gene28708:intron | 25.0% |
| !!! | ATGATATTGATTTTCCAAGA+GGG | + | chr4.3:19308732-19308751 | MS.gene28708:CDS | 25.0% |
| !!! | CTTTTAAGTTATTTTGGTGT+AGG | - | chr4.3:19310338-19310357 | None:intergenic | 25.0% |
| !!! | TATGATATTGATTTTCCAAG+AGG | + | chr4.3:19308731-19308750 | MS.gene28708:CDS | 25.0% |
| !!! | TTGTCCCTTTTAAGTTATTT+TGG | - | chr4.3:19310344-19310363 | None:intergenic | 25.0% |
| AAAATCCAAGATACCAAACT+TGG | + | chr4.3:19309522-19309541 | MS.gene28708:intron | 30.0% | |
| AAACCATCAGATGATTCAAA+AGG | + | chr4.3:19309370-19309389 | MS.gene28708:CDS | 30.0% | |
| AATGTTACAGTCGATGAATA+TGG | + | chr4.3:19309160-19309179 | MS.gene28708:CDS | 30.0% | |
| ACCTAAGATACACTGTAAAA+TGG | + | chr4.3:19309284-19309303 | MS.gene28708:CDS | 30.0% | |
| ACTAAACTTTACAATTGACC+CGG | - | chr4.3:19310381-19310400 | None:intergenic | 30.0% | |
| AGACAAACAAACTACGAATA+TGG | - | chr4.3:19309627-19309646 | None:intergenic | 30.0% | |
| AGAGATCATAATGAGAGAAA+TGG | + | chr4.3:19309752-19309771 | MS.gene28708:CDS | 30.0% | |
| AGGTTGAAATTGAATCATCT+TGG | - | chr4.3:19310318-19310337 | None:intergenic | 30.0% | |
| ATCAAGATACTAGTAGTTTG+TGG | + | chr4.3:19309430-19309449 | MS.gene28708:intron | 30.0% | |
| ATCCACATATTTCAGAAAAC+AGG | - | chr4.3:19310843-19310862 | None:intergenic | 30.0% | |
| ATGAATATGGAAGGTCTATT+AGG | + | chr4.3:19309173-19309192 | MS.gene28708:CDS | 30.0% | |
| ATTAGGTCAGATTATAAAGG+AGG | + | chr4.3:19309190-19309209 | MS.gene28708:CDS | 30.0% | |
| CATAAAAAATGAAGAACGAG+TGG | - | chr4.3:19311118-19311137 | None:intergenic | 30.0% | |
| CCTAAGATACACTGTAAAAT+GGG | + | chr4.3:19309285-19309304 | MS.gene28708:CDS | 30.0% | |
| CTATGAGTTACAACAATGAT+TGG | - | chr4.3:19310074-19310093 | None:intergenic | 30.0% | |
| TCTGTTTGAATACTACAGTT+TGG | - | chr4.3:19310658-19310677 | None:intergenic | 30.0% | |
| TGATTCAAAAGGATTGAACT+CGG | + | chr4.3:19309381-19309400 | MS.gene28708:CDS | 30.0% | |
| TGTTCTTCTATACCAAGTTA+CGG | + | chr4.3:19310889-19310908 | MS.gene28708:CDS | 30.0% | |
| ! | AAACACTCGAGATTTTATCA+CGG | - | chr4.3:19310726-19310745 | None:intergenic | 30.0% |
| ! | AAGATGGATTTCTTTGTTTC+AGG | + | chr4.3:19309703-19309722 | MS.gene28708:intron | 30.0% |
| ! | AATATGTGGATCATGTTTTC+AGG | + | chr4.3:19310852-19310871 | MS.gene28708:intron | 30.0% |
| ! | AATCCTTTTGAATCATCTGA+TGG | - | chr4.3:19309376-19309395 | None:intergenic | 30.0% |
| ! | ATACTAGTAGTTTGTGGAAA+TGG | + | chr4.3:19309436-19309455 | MS.gene28708:intron | 30.0% |
| ! | ATGTCGTAGTTTTCAATTCA+GGG | + | chr4.3:19310520-19310539 | MS.gene28708:intron | 30.0% |
| ! | GAAATGGATTTCATGTAGTT+GGG | + | chr4.3:19309452-19309471 | MS.gene28708:intron | 30.0% |
| ! | TAAATTGAAGGAAGGTTTTG+AGG | + | chr4.3:19309243-19309262 | MS.gene28708:CDS | 30.0% |
| ! | TATCTATTGATAACTGATCC+AGG | - | chr4.3:19308707-19308726 | None:intergenic | 30.0% |
| !! | AAATTGAAGGAAGGTTTTGA+GGG | + | chr4.3:19309244-19309263 | MS.gene28708:CDS | 30.0% |
| !! | AATGTCTAAAGTGTTGGTAT+GGG | - | chr4.3:19311095-19311114 | None:intergenic | 30.0% |
| !! | ACTTAGACCTTTTAACTGTT+AGG | + | chr4.3:19309946-19309965 | MS.gene28708:intron | 30.0% |
| !! | TAAATACTTGGTGTTAGCTA+GGG | + | chr4.3:19309918-19309937 | MS.gene28708:intron | 30.0% |
| !! | TGTAAGTTAGATATTGGCTT+TGG | - | chr4.3:19310137-19310156 | None:intergenic | 30.0% |
| !! | TTAAATACTTGGTGTTAGCT+AGG | + | chr4.3:19309917-19309936 | MS.gene28708:intron | 30.0% |
| !!! | CACTCGTTCTTCATTTTTTA+TGG | + | chr4.3:19311116-19311135 | MS.gene28708:CDS | 30.0% |
| AACATGGAAAACTCCAAAAC+TGG | + | chr4.3:19310020-19310039 | MS.gene28708:intron | 35.0% | |
| AACTAGACAGTAGACACAAT+TGG | + | chr4.3:19310693-19310712 | MS.gene28708:intron | 35.0% | |
| AATGATTCTGCCCCTTAAAA+GGG | + | chr4.3:19310460-19310479 | MS.gene28708:intron | 35.0% | |
| AATGTCAATCCACAGTACTT+TGG | + | chr4.3:19308956-19308975 | MS.gene28708:CDS | 35.0% | |
| ACAAAATTCAAATCCCTTCC+GGG | + | chr4.3:19310360-19310379 | MS.gene28708:intron | 35.0% | |
| ACACAGTGTAAATTGAAGGA+AGG | + | chr4.3:19309235-19309254 | MS.gene28708:CDS | 35.0% | |
| AGATACCAAACTTGGAATCT+AGG | + | chr4.3:19309530-19309549 | MS.gene28708:intron | 35.0% | |
| AGATTCCAAGTTTGGTATCT+TGG | - | chr4.3:19309530-19309549 | None:intergenic | 35.0% | |
| ATGGTTGTGTTAATGTGATG+AGG | + | chr4.3:19309771-19309790 | MS.gene28708:CDS | 35.0% | |
| CATGTTCTTGTGAGGAATAA+TGG | + | chr4.3:19308920-19308939 | MS.gene28708:CDS | 35.0% | |
| CTGAATTGAAAACTACGACA+TGG | - | chr4.3:19310521-19310540 | None:intergenic | 35.0% | |
| GACAAAATTCAAATCCCTTC+CGG | + | chr4.3:19310359-19310378 | MS.gene28708:intron | 35.0% | |
| GAGGCTAAGGTTATATACAT+GGG | - | chr4.3:19310257-19310276 | None:intergenic | 35.0% | |
| GGAATTGGATCAACTCTATA+TGG | + | chr4.3:19309857-19309876 | MS.gene28708:CDS | 35.0% | |
| GTGTGAATTATTGGCAATTG+AGG | + | chr4.3:19310568-19310587 | MS.gene28708:intron | 35.0% | |
| TAATGATTCTGCCCCTTAAA+AGG | + | chr4.3:19310459-19310478 | MS.gene28708:intron | 35.0% | |
| TACGACATGGAAAGACTAAA+GGG | - | chr4.3:19310508-19310527 | None:intergenic | 35.0% | |
| TCATTTCCATTTCCGTAACT+TGG | - | chr4.3:19310904-19310923 | None:intergenic | 35.0% | |
| TCTATACCAAGTTACGGAAA+TGG | + | chr4.3:19310895-19310914 | MS.gene28708:CDS | 35.0% | |
| TGAAGATAAGTTTCATGGAG+AGG | - | chr4.3:19308815-19308834 | None:intergenic | 35.0% | |
| TGATTGGCATTAGACAATAG+CGG | - | chr4.3:19310058-19310077 | None:intergenic | 35.0% | |
| TGCCTAGTATTGTAAAGGAA+GGG | - | chr4.3:19310281-19310300 | None:intergenic | 35.0% | |
| TTAAGGGGCAGAATCATTAT+TGG | - | chr4.3:19310458-19310477 | None:intergenic | 35.0% | |
| TTACAGTCGATGAATATGGA+AGG | + | chr4.3:19309164-19309183 | MS.gene28708:CDS | 35.0% | |
| TTCACAAAAGAAGTTGAGCA+TGG | - | chr4.3:19308629-19308648 | None:intergenic | 35.0% | |
| TTCTTCGTTACAAAATGCAC+CGG | - | chr4.3:19310228-19310247 | None:intergenic | 35.0% | |
| ! | AATGGGACTTTTCTACCTAT+TGG | + | chr4.3:19311056-19311075 | MS.gene28708:CDS | 35.0% |
| ! | ACACTGGTCTAATACTTTGT+TGG | + | chr4.3:19309667-19309686 | MS.gene28708:intron | 35.0% |
| ! | CACTGGTCTAATACTTTGTT+GGG | + | chr4.3:19309668-19309687 | MS.gene28708:intron | 35.0% |
| ! | CATGTCGTAGTTTTCAATTC+AGG | + | chr4.3:19310519-19310538 | MS.gene28708:intron | 35.0% |
| ! | CCCATTTTACAGTGTATCTT+AGG | - | chr4.3:19309288-19309307 | None:intergenic | 35.0% |
| ! | GGAAATGGATTTCATGTAGT+TGG | + | chr4.3:19309451-19309470 | MS.gene28708:intron | 35.0% |
| ! | TAAGTTTCATGGAGAGGTAT+AGG | - | chr4.3:19308809-19308828 | None:intergenic | 35.0% |
| !! | ACACTGTAAAATGGGTTGAT+TGG | + | chr4.3:19309293-19309312 | MS.gene28708:CDS | 35.0% |
| !! | ATAAACTTGGTGTTTCTGAC+CGG | + | chr4.3:19310206-19310225 | MS.gene28708:intron | 35.0% |
| !! | CACTGTAAAATGGGTTGATT+GGG | + | chr4.3:19309294-19309313 | MS.gene28708:CDS | 35.0% |
| !! | GAATGTCTAAAGTGTTGGTA+TGG | - | chr4.3:19311096-19311115 | None:intergenic | 35.0% |
| !! | TAGTCTAGAGTCCCTTTTAA+GGG | - | chr4.3:19310474-19310493 | None:intergenic | 35.0% |
| !! | TTAGATATTGGCTTTGGAGA+GGG | - | chr4.3:19310131-19310150 | None:intergenic | 35.0% |
| !!! | AATTGAAGGAAGGTTTTGAG+GGG | + | chr4.3:19309245-19309264 | MS.gene28708:CDS | 35.0% |
| !!! | ATTCTGGTTTTAGAGTGTTG+TGG | - | chr4.3:19310162-19310181 | None:intergenic | 35.0% |
| !!! | TTCTGGTTTTAGAGTGTTGT+GGG | - | chr4.3:19310161-19310180 | None:intergenic | 35.0% |
| AAAAGAAGTTGAGCATGGTG+TGG | - | chr4.3:19308624-19308643 | None:intergenic | 40.0% | |
| AACTTTACAATTGACCCGGA+AGG | - | chr4.3:19310377-19310396 | None:intergenic | 40.0% | |
| AATCCTGAAGAGATTCCAGA+AGG | + | chr4.3:19309043-19309062 | MS.gene28708:CDS | 40.0% | |
| AATGAAGCTGGAAATGAGAC+AGG | + | chr4.3:19310919-19310938 | MS.gene28708:CDS | 40.0% | |
| AATGAGACAGGCTACATTGT+AGG | + | chr4.3:19310931-19310950 | MS.gene28708:CDS | 40.0% | |
| ACAAATCTCCCACTACAAAC+TGG | + | chr4.3:19309794-19309813 | MS.gene28708:CDS | 40.0% | |
| ACACAGAAAATGATAGCCAC+AGG | + | chr4.3:19308879-19308898 | MS.gene28708:CDS | 40.0% | |
| ACAGATATTCCGGATCCTTT+CGG | + | chr4.3:19309007-19309026 | MS.gene28708:CDS | 40.0% | |
| ACGACATGGAAAGACTAAAG+GGG | - | chr4.3:19310507-19310526 | None:intergenic | 40.0% | |
| ACTGTCCTAGATTCCAAGTT+TGG | - | chr4.3:19309538-19309557 | None:intergenic | 40.0% | |
| ACTTTACAATTGACCCGGAA+GGG | - | chr4.3:19310376-19310395 | None:intergenic | 40.0% | |
| AGAGATTCCAGAAGGGTTTA+AGG | + | chr4.3:19309051-19309070 | MS.gene28708:CDS | 40.0% | |
| AGGGTTTAAGGACAAATGGT+TGG | + | chr4.3:19309063-19309082 | MS.gene28708:CDS | 40.0% | |
| ATCCTGAAGAGATTCCAGAA+GGG | + | chr4.3:19309044-19309063 | MS.gene28708:CDS | 40.0% | |
| ATGGAAAACTCCAAAACTGG+AGG | + | chr4.3:19310023-19310042 | MS.gene28708:intron | 40.0% | |
| ATTAGCACGAGTATGGATCA+GGG | + | chr4.3:19310619-19310638 | MS.gene28708:intron | 40.0% | |
| CACACTGCCTAGTATTGTAA+AGG | - | chr4.3:19310286-19310305 | None:intergenic | 40.0% | |
| CAGAAGGGTTTAAGGACAAA+TGG | + | chr4.3:19309059-19309078 | MS.gene28708:CDS | 40.0% | |
| CATTTGTCCTTAAACCCTTC+TGG | - | chr4.3:19309061-19309080 | None:intergenic | 40.0% | |
| CCTAGTATTGTAAAGGAAGG+GGG | - | chr4.3:19310279-19310298 | None:intergenic | 40.0% | |
| CTACGACATGGAAAGACTAA+AGG | - | chr4.3:19310509-19310528 | None:intergenic | 40.0% | |
| CTGCCTAGTATTGTAAAGGA+AGG | - | chr4.3:19310282-19310301 | None:intergenic | 40.0% | |
| CTTAGGTAGAGACTTCTCTT+TGG | - | chr4.3:19309271-19309290 | None:intergenic | 40.0% | |
| GATTGGCATTAGACAATAGC+GGG | - | chr4.3:19310057-19310076 | None:intergenic | 40.0% | |
| GCCTAGTATTGTAAAGGAAG+GGG | - | chr4.3:19310280-19310299 | None:intergenic | 40.0% | |
| GGAGGCTAAGGTTATATACA+TGG | - | chr4.3:19310258-19310277 | None:intergenic | 40.0% | |
| GGTTCTGTCAAGATAGTTGA+TGG | + | chr4.3:19310979-19310998 | MS.gene28708:CDS | 40.0% | |
| GTGGGGTGTAAGTTAGATAT+TGG | - | chr4.3:19310143-19310162 | None:intergenic | 40.0% | |
| TACGGAAATGGAAATGAAGC+TGG | + | chr4.3:19310907-19310926 | MS.gene28708:CDS | 40.0% | |
| TATCTTCATCATTGGGCTGT+TGG | + | chr4.3:19308827-19308846 | MS.gene28708:CDS | 40.0% | |
| TCAACTATCTTGACAGAACC+TGG | - | chr4.3:19310979-19310998 | None:intergenic | 40.0% | |
| TGGAAAACTCCAAAACTGGA+GGG | + | chr4.3:19310024-19310043 | MS.gene28708:intron | 40.0% | |
| TGGATCAACTCTATATGGAC+AGG | + | chr4.3:19309862-19309881 | MS.gene28708:CDS | 40.0% | |
| TGGGTGTTTAATGAGCAAGA+TGG | + | chr4.3:19309687-19309706 | MS.gene28708:intron | 40.0% | |
| TTAAGTGCTATATGCCCTCT+TGG | - | chr4.3:19308749-19308768 | None:intergenic | 40.0% | |
| TTACCTATCTCTATGCCGAA+AGG | - | chr4.3:19309025-19309044 | None:intergenic | 40.0% | |
| ! | GAGTGGAATGTCTAAAGTGT+TGG | - | chr4.3:19311101-19311120 | None:intergenic | 40.0% |
| !! | AGTCTAGAGTCCCTTTTAAG+GGG | - | chr4.3:19310473-19310492 | None:intergenic | 40.0% |
| !! | CTAGTCTAGAGTCCCTTTTA+AGG | - | chr4.3:19310475-19310494 | None:intergenic | 40.0% |
| !! | GTTAGATATTGGCTTTGGAG+AGG | - | chr4.3:19310132-19310151 | None:intergenic | 40.0% |
| !! | TGAGTTGATTAGCACGAGTA+TGG | + | chr4.3:19310612-19310631 | MS.gene28708:intron | 40.0% |
| !! | TGTGGATCATGTTTTCAGGA+TGG | + | chr4.3:19310856-19310875 | MS.gene28708:intron | 40.0% |
| !!! | GGCCTGTTTTCTGAAATATG+TGG | + | chr4.3:19310838-19310857 | MS.gene28708:intron | 40.0% |
| !!! | TCTGGTTTTAGAGTGTTGTG+GGG | - | chr4.3:19310160-19310179 | None:intergenic | 40.0% |
| AATCCACAGTACTTTGGCCT+TGG | + | chr4.3:19308962-19308981 | MS.gene28708:CDS | 45.0% | |
| AATCTCCCACTACAAACTGG+TGG | + | chr4.3:19309797-19309816 | MS.gene28708:CDS | 45.0% | |
| ACATAGCCACCAGTTTGTAG+TGG | - | chr4.3:19309806-19309825 | None:intergenic | 45.0% | |
| AGGAACAGCGACAGATATTC+CGG | + | chr4.3:19308997-19309016 | MS.gene28708:CDS | 45.0% | |
| AGGTCCTAGCTCGAATTTAG+GGG | - | chr4.3:19308687-19308706 | None:intergenic | 45.0% | |
| AGTATTGTAAAGGAAGGGGG+AGG | - | chr4.3:19310276-19310295 | None:intergenic | 45.0% | |
| ATCTCTATGCCGAAAGGATC+CGG | - | chr4.3:19309019-19309038 | None:intergenic | 45.0% | |
| CAGGTCCTAGCTCGAATTTA+GGG | - | chr4.3:19308688-19308707 | None:intergenic | 45.0% | |
| CATAGCCACCAGTTTGTAGT+GGG | - | chr4.3:19309805-19309824 | None:intergenic | 45.0% | |
| CATCAGCATTCAGGTGGAAT+TGG | + | chr4.3:19309842-19309861 | MS.gene28708:CDS | 45.0% | |
| CCCCCTTCCTTTACAATACT+AGG | + | chr4.3:19310276-19310295 | MS.gene28708:intron | 45.0% | |
| CGACATGGAAAGACTAAAGG+GGG | - | chr4.3:19310506-19310525 | None:intergenic | 45.0% | |
| GAACTCGGATCATGATTGCA+AGG | + | chr4.3:19309396-19309415 | MS.gene28708:CDS | 45.0% | |
| GATCCTTTCGGCATAGAGAT+AGG | + | chr4.3:19309019-19309038 | MS.gene28708:CDS | 45.0% | |
| GATTAGCACGAGTATGGATC+AGG | + | chr4.3:19310618-19310637 | MS.gene28708:intron | 45.0% | |
| GCTCTGATCATGTTCTTGTG+AGG | + | chr4.3:19308912-19308931 | MS.gene28708:CDS | 45.0% | |
| GGAAAACTCCAAAACTGGAG+GGG | + | chr4.3:19310025-19310044 | MS.gene28708:intron | 45.0% | |
| GTTCATGCTATTGATACGCG+CGG | + | chr4.3:19309091-19309110 | MS.gene28708:CDS | 45.0% | |
| TTAGCACGAGTATGGATCAG+GGG | + | chr4.3:19310620-19310639 | MS.gene28708:intron | 45.0% | |
| TTGTCCCCTAAATTCGAGCT+AGG | + | chr4.3:19308680-19308699 | MS.gene28708:CDS | 45.0% | |
| ! | AAGGAGCACACTGGAGTAAT+GGG | + | chr4.3:19311039-19311058 | MS.gene28708:CDS | 45.0% |
| ! | ACATTGACTGCGTGAATGCA+TGG | - | chr4.3:19309484-19309503 | None:intergenic | 45.0% |
| ! | CGAGATTTTATCACGGCGTT+CGG | - | chr4.3:19310719-19310738 | None:intergenic | 45.0% |
| ! | GGGACTTTTCTACCTATTGG+TGG | + | chr4.3:19311059-19311078 | MS.gene28708:CDS | 45.0% |
| !! | AACCCTTCTGGAATCTCTTC+AGG | - | chr4.3:19309049-19309068 | None:intergenic | 45.0% |
| !! | GCTGAAGTAGTTGATGATGC+TGG | + | chr4.3:19308779-19308798 | MS.gene28708:CDS | 45.0% |
| !!! | GGTTTTTTCCCCTCCAGTTT+TGG | - | chr4.3:19310036-19310055 | None:intergenic | 45.0% |
| ACCTGGTCGAGGATAACAAG+TGG | - | chr4.3:19310962-19310981 | None:intergenic | 50.0% | |
| ATCTTGACAGAACCTGGTCG+AGG | - | chr4.3:19310973-19310992 | None:intergenic | 50.0% | |
| CCAGGTCCTAGCTCGAATTT+AGG | - | chr4.3:19308689-19308708 | None:intergenic | 50.0% | |
| CCTAAATTCGAGCTAGGACC+TGG | + | chr4.3:19308686-19308705 | MS.gene28708:CDS | 50.0% | |
| GCTGTTGCTCATCAGCATTC+AGG | + | chr4.3:19309833-19309852 | MS.gene28708:CDS | 50.0% | |
| GGAGTTGTTCTGCCACCAAT+AGG | - | chr4.3:19311074-19311093 | None:intergenic | 50.0% | |
| GTCTAACTACAGCAGCAGCA+AGG | + | chr4.3:19311020-19311039 | MS.gene28708:CDS | 50.0% | |
| GTTGCTCATCAGCATTCAGG+TGG | + | chr4.3:19309836-19309855 | MS.gene28708:CDS | 50.0% | |
| TGTCGCTGTTCCTCGTGTTT+CGG | - | chr4.3:19308990-19309009 | None:intergenic | 50.0% | |
| TTCCTCGTGTTTCGGATCCA+AGG | - | chr4.3:19308982-19309001 | None:intergenic | 50.0% | |
| ! | CAAGGAGCACACTGGAGTAA+TGG | + | chr4.3:19311038-19311057 | MS.gene28708:CDS | 50.0% |
| ! | CAGAGCTTTGTAGCATCCTG+TGG | - | chr4.3:19308898-19308917 | None:intergenic | 50.0% |
| !! | GATCCAAGGCCAAAGTACTG+TGG | - | chr4.3:19308968-19308987 | None:intergenic | 50.0% |
| !! | TCCACTTGTTATCCTCGACC+AGG | + | chr4.3:19310958-19310977 | MS.gene28708:CDS | 50.0% |
| GCGGCGCAGAGGATAAGTTA+GGG | + | chr4.3:19309110-19309129 | MS.gene28708:CDS | 55.0% | |
| GTAAAGGAAGGGGGAGGCTA+AGG | - | chr4.3:19310270-19310289 | None:intergenic | 55.0% | |
| !! | GGGTGAGTATTGAGCTCGTG+AGG | - | chr4.3:19310111-19310130 | None:intergenic | 55.0% |
| CGCGGCGCAGAGGATAAGTT+AGG | + | chr4.3:19309109-19309128 | MS.gene28708:CDS | 60.0% | |
| GGCCTTGGATCCGAAACACG+AGG | + | chr4.3:19308977-19308996 | MS.gene28708:CDS | 60.0% | |
| TATTGATACGCGCGGCGCAG+AGG | + | chr4.3:19309099-19309118 | MS.gene28708:CDS | 60.0% | |
| ! | AGCAGCAGCAAGGAGCACAC+TGG | + | chr4.3:19311030-19311049 | MS.gene28708:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 19308563 | 19311167 | 19308563 | ID=MS.gene28708 |
| chr4.3 | mRNA | 19308563 | 19311167 | 19308563 | ID=MS.gene28708.t1;Parent=MS.gene28708 |
| chr4.3 | exon | 19308563 | 19309417 | 19308563 | ID=MS.gene28708.t1.exon1;Parent=MS.gene28708.t1 |
| chr4.3 | CDS | 19308563 | 19309417 | 19308563 | ID=cds.MS.gene28708.t1;Parent=MS.gene28708.t1 |
| chr4.3 | exon | 19309725 | 19309883 | 19309725 | ID=MS.gene28708.t1.exon2;Parent=MS.gene28708.t1 |
| chr4.3 | CDS | 19309725 | 19309883 | 19309725 | ID=cds.MS.gene28708.t1;Parent=MS.gene28708.t1 |
| chr4.3 | exon | 19310874 | 19311167 | 19310874 | ID=MS.gene28708.t1.exon3;Parent=MS.gene28708.t1 |
| chr4.3 | CDS | 19310874 | 19311167 | 19310874 | ID=cds.MS.gene28708.t1;Parent=MS.gene28708.t1 |
| Gene Sequence |
| Protein sequence |
