AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene28722


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28722.t1 MTR_4g094498 95.212 543 26 0 1 543 1 543 0.0 1014
MS.gene28722.t1 MTR_2g031560 59.642 503 200 2 36 535 22 524 0.0 643
MS.gene28722.t1 MTR_2g031590 59.604 505 197 2 37 534 28 532 0.0 627
MS.gene28722.t1 MTR_4g094515 57.769 502 205 3 38 533 39 539 0.0 593
MS.gene28722.t1 MTR_4g094515 55.159 533 236 1 9 538 622 1154 0.0 593
MS.gene28722.t1 MTR_2g031490 56.530 536 220 6 7 534 8 538 0.0 592
MS.gene28722.t1 MTR_2g031510 57.822 505 202 5 38 534 39 540 0.0 584
MS.gene28722.t1 MTR_2g031390 52.894 501 230 3 39 534 30 529 0.0 562
MS.gene28722.t1 MTR_4g094495 54.008 524 232 3 23 537 20 543 0.0 556
MS.gene28722.t1 MTR_4g094480 54.004 537 238 5 8 537 4 538 0.0 553
MS.gene28722.t1 MTR_4g094478 53.458 535 238 5 8 534 4 535 0.0 548
MS.gene28722.t1 MTR_4g094492 52.788 538 244 6 8 537 4 539 0.0 547
MS.gene28722.t1 MTR_4g094488 53.922 510 226 3 37 537 31 540 0.0 546
MS.gene28722.t1 MTR_4g094518 53.770 504 227 3 36 534 28 530 0.0 544
MS.gene28722.t1 MTR_4g088355 55.754 504 218 4 39 537 33 536 0.0 543
MS.gene28722.t1 MTR_4g091150 55.357 504 215 5 39 534 39 540 0.0 541
MS.gene28722.t1 MTR_3g009820 50.568 528 248 5 12 536 7 524 0.0 537
MS.gene28722.t1 MTR_3g009880 50.662 529 249 5 11 536 3 522 0.0 536
MS.gene28722.t1 MTR_4g091200 53.578 517 223 5 21 533 22 525 0.0 532
MS.gene28722.t1 MTR_3g009760 50.000 530 248 6 12 536 7 524 0.0 531
MS.gene28722.t1 MTR_2g031420 53.785 502 225 4 37 535 31 528 0.0 531
MS.gene28722.t1 MTR_4g094520 50.564 532 249 5 7 534 11 532 0.0 530
MS.gene28722.t1 MTR_2g031460 52.953 508 232 4 37 541 31 534 0.0 526
MS.gene28722.t1 MTR_4g091190 50.662 529 258 3 14 540 7 534 0.0 523
MS.gene28722.t1 MTR_6g017205 52.713 516 227 5 22 533 23 525 0.0 523
MS.gene28722.t1 MTR_4g057990 50.476 525 248 6 11 533 7 521 2.40e-175 505
MS.gene28722.t1 MTR_4g094418 57.569 436 175 4 110 535 1 436 7.28e-175 507
MS.gene28722.t1 MTR_2g023590 52.790 466 218 2 73 536 3 468 4.97e-166 479
MS.gene28722.t1 MTR_4g091170 49.672 457 210 3 80 533 102 541 2.09e-157 461
MS.gene28722.t1 MTR_1g076830 42.020 495 274 5 50 531 38 532 1.88e-127 384
MS.gene28722.t1 MTR_2g031600 66.667 216 72 0 37 252 29 244 1.08e-95 297
MS.gene28722.t1 MTR_2g031600 59.236 157 64 0 378 534 244 400 1.30e-63 213
MS.gene28722.t1 MTR_3g009850 51.082 231 112 1 308 537 1 231 6.09e-76 240
MS.gene28722.t1 MTR_2g084370 43.243 111 41 2 134 244 1 89 3.22e-27 105
MS.gene28722.t1 MTR_2g084405 46.154 91 49 0 134 224 1 91 1.75e-19 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28722.t1 AT4G20840 55.865 503 218 3 38 537 37 538 0.0 566
MS.gene28722.t1 AT1G30700 54.597 533 223 7 8 534 7 526 0.0 559
MS.gene28722.t1 AT1G34575 54.095 525 224 7 12 532 11 522 0.0 559
MS.gene28722.t1 AT1G01980 54.706 510 222 5 38 539 31 539 0.0 556
MS.gene28722.t1 AT1G11770 53.307 499 229 3 39 534 32 529 0.0 550
MS.gene28722.t1 AT4G20830 55.952 504 218 3 37 537 37 539 0.0 548
MS.gene28722.t1 AT4G20830 55.952 504 218 3 37 537 37 539 0.0 548
MS.gene28722.t1 AT1G30710 54.871 503 214 6 41 536 34 530 0.0 548
MS.gene28722.t1 AT5G44400 49.159 535 256 7 7 534 11 536 0.0 524
MS.gene28722.t1 AT1G30760 51.195 502 233 5 39 533 35 531 8.15e-180 517
MS.gene28722.t1 AT1G30760 51.195 502 233 5 39 533 53 549 8.60e-180 518
MS.gene28722.t1 AT2G34790 49.434 530 249 7 11 533 12 529 2.10e-179 516
MS.gene28722.t1 AT1G26390 50.501 499 240 4 39 532 29 525 5.39e-179 515
MS.gene28722.t1 AT1G30720 50.685 511 246 4 26 532 16 524 8.81e-178 511
MS.gene28722.t1 AT1G26380 51.190 504 239 5 39 538 29 529 1.42e-177 511
MS.gene28722.t1 AT1G26420 50.095 525 248 8 13 532 8 523 1.75e-177 511
MS.gene28722.t1 AT1G30740 50.095 529 258 4 11 534 1 528 8.45e-177 509
MS.gene28722.t1 AT1G30740 50.095 529 258 4 11 534 4 531 9.25e-177 509
MS.gene28722.t1 AT1G30730 49.053 528 255 6 11 532 4 523 1.25e-176 509
MS.gene28722.t1 AT1G26400 51.116 493 235 5 42 531 32 521 2.93e-176 508
MS.gene28722.t1 AT1G26410 50.000 500 239 6 39 532 53 547 9.56e-175 505
MS.gene28722.t1 AT4G20800 50.499 501 243 3 39 536 29 527 9.39e-174 501
MS.gene28722.t1 AT5G44390 50.000 508 244 7 36 534 34 540 1.26e-173 501
MS.gene28722.t1 AT4G20820 48.302 530 258 7 6 532 8 524 5.37e-170 492
MS.gene28722.t1 AT5G44380 48.964 531 255 7 11 534 18 539 1.68e-168 488
MS.gene28722.t1 AT5G44380 48.964 531 255 7 11 534 58 579 1.99e-168 490
MS.gene28722.t1 AT2G34810 49.213 508 245 6 39 535 35 540 8.62e-165 479
MS.gene28722.t1 AT4G20860 49.241 461 229 3 75 534 73 529 5.33e-162 471
MS.gene28722.t1 AT5G44360 47.417 542 265 11 1 534 1 530 5.17e-161 469
MS.gene28722.t1 AT5G44360 47.417 542 265 11 1 534 17 546 5.49e-161 469
MS.gene28722.t1 AT5G44440 47.358 530 262 8 12 532 6 527 7.01e-161 469
MS.gene28722.t1 AT5G44440 47.358 530 262 8 12 532 76 597 9.82e-160 468
MS.gene28722.t1 AT5G44410 47.103 535 259 10 8 532 7 527 2.58e-150 442

Find 112 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTCTGATGTAGGAGTTTA+AGG 0.141806 4.3:+19428431 None:intergenic
GGTAACATGATGAGAAAATT+TGG 0.203065 4.3:-19428048 MS.gene28722:CDS
AAATTCAGTACTCAGTAAAT+TGG 0.225006 4.3:-19427330 MS.gene28722:CDS
GTTATCTGTTGATAATATTT+TGG 0.226666 4.3:-19428025 MS.gene28722:CDS
TGATGTTGCGAATCAATATT+TGG 0.237497 4.3:-19427293 MS.gene28722:CDS
CAGAAGCCGATATCGAAAAT+TGG 0.245756 4.3:-19427484 MS.gene28722:CDS
AAGTTCAATGCTTTGTTTCT+TGG 0.250620 4.3:-19427703 MS.gene28722:CDS
GTTATGAAGAAGCTAGTATT+TGG 0.256401 4.3:-19427156 MS.gene28722:CDS
CACTTCTGATTCTGATTTCA+AGG 0.264026 4.3:+19428307 None:intergenic
ACATTGGAGAAGGGTATTAT+TGG 0.289591 4.3:+19428530 None:intergenic
TCACTCACATTCAATCCTTA+TGG 0.296274 4.3:-19427418 MS.gene28722:CDS
CAATTGGTGAAGTTTATTAT+AGG 0.302894 4.3:-19428158 MS.gene28722:CDS
GTGAGAATGAAAACGGGTTT+TGG 0.306146 4.3:+19428384 None:intergenic
GCTGAGATTAGTAGTGTTCA+TGG 0.313039 4.3:-19428132 MS.gene28722:CDS
TTCTTCCCCTTTCTCTTAGC+AGG 0.322817 4.3:+19427739 None:intergenic
TTATGAAGAAGCTAGTATTT+GGG 0.337096 4.3:-19427155 MS.gene28722:CDS
TTGATGGAAGGATTCTTGAT+AGG 0.341832 4.3:-19427984 MS.gene28722:CDS
AAATTGGGTTGGATGGTATA+TGG 0.351960 4.3:-19427468 MS.gene28722:CDS
TAGTGGATGAGTTGAATCTA+AGG 0.353487 4.3:+19428409 None:intergenic
GGATTGATTCAGTGTTGTTT+TGG 0.358314 4.3:-19427597 MS.gene28722:CDS
GGTGGTGGTGGAGCTAGTTT+TGG 0.359729 4.3:-19427925 MS.gene28722:CDS
TAGTTCACATACGAACTTCT+TGG 0.361444 4.3:+19427220 None:intergenic
GGTGAATATGAAGGTGTGTT+TGG 0.363695 4.3:+19428456 None:intergenic
ACTTCTGAGATTGGATTAGA+AGG 0.364151 4.3:+19428489 None:intergenic
ATCAATATTTGGATCGGATT+CGG 0.364710 4.3:-19427282 MS.gene28722:CDS
AAAGGGGAAGAAAACAATTA+AGG 0.365322 4.3:-19427728 MS.gene28722:CDS
GTAACATGATGAGAAAATTT+GGG 0.371973 4.3:-19428047 MS.gene28722:CDS
TCACCAATCAAACCCAATTC+AGG 0.380665 4.3:+19427640 None:intergenic
CTTGGTGAATTTGACACATA+AGG 0.383022 4.3:+19427238 None:intergenic
ATTTCAAAGGAAACTTTGAT+AGG 0.386790 4.3:-19427123 MS.gene28722:CDS
GCTAAGATTGTTGATGTTGA+TGG 0.387710 4.3:-19428000 MS.gene28722:CDS
TTTCCTGAATTGGGTTTGAT+TGG 0.401805 4.3:-19427643 MS.gene28722:CDS
AGATGGGGTGAGAATGAAAA+CGG 0.420577 4.3:+19428377 None:intergenic
GAATCTTTGTGGGTTGAATC+AGG 0.425783 4.3:-19428186 MS.gene28722:CDS
TGAAGGTGTGTTTGGGAAGT+AGG 0.431103 4.3:+19428464 None:intergenic
GTTTGTCCTACTGTTGGTGT+TGG 0.433697 4.3:-19428096 MS.gene28722:CDS
AAGTAGGTAACTTCTGAGAT+TGG 0.442446 4.3:+19428480 None:intergenic
TGGGCTATTAGAGGTGGTGG+TGG 0.463521 4.3:-19427937 MS.gene28722:CDS
GAATCTAAGGTTTCTGATGT+AGG 0.467537 4.3:+19428422 None:intergenic
TGTCCTACTGTTGGTGTTGG+TGG 0.469479 4.3:-19428093 MS.gene28722:CDS
TGTTTCTTGGAAGATTAAGT+TGG 0.470889 4.3:-19427896 MS.gene28722:CDS
TGGTATTAATATCATTATGT+TGG 0.473730 4.3:+19428550 None:intergenic
GTGAATATGAAGGTGTGTTT+GGG 0.475111 4.3:+19428457 None:intergenic
GTTAGTCCTGCTAAGAGAAA+GGG 0.476006 4.3:-19427745 MS.gene28722:CDS
GATGTTGATATAGGTGTCAA+TGG 0.476097 4.3:-19427193 MS.gene28722:CDS
TATAAAAGATGAATCTTTGT+GGG 0.478869 4.3:-19428196 MS.gene28722:CDS
AGAAGCCGATATCGAAAATT+GGG 0.479345 4.3:-19427483 MS.gene28722:CDS
CTGATGTAGGAGTTTAAGGT+GGG 0.479655 4.3:+19428435 None:intergenic
CCCATCAAGATGCATACAAT+TGG 0.482333 4.3:-19428642 None:intergenic
AGAGAGAAAGACATTGGAGA+AGG 0.488844 4.3:+19428520 None:intergenic
TCTGATGTAGGAGTTTAAGG+TGG 0.489776 4.3:+19428434 None:intergenic
TGTTAGTCCTGCTAAGAGAA+AGG 0.490473 4.3:-19427746 MS.gene28722:CDS
GATTCTTGATAGGGAATCAA+TGG 0.496588 4.3:-19427974 MS.gene28722:CDS
GAACATGTCAAGAACAATGA+AGG 0.496807 4.3:+19428242 None:intergenic
TGATGGAAGGATTCTTGATA+GGG 0.500795 4.3:-19427983 MS.gene28722:CDS
ATATAAAAGATGAATCTTTG+TGG 0.502433 4.3:-19428197 MS.gene28722:CDS
AGCAATGTATTGAAATGAGT+TGG 0.506091 4.3:-19427618 MS.gene28722:CDS
ATGTGGAATACTATGAAGAA+TGG 0.513188 4.3:+19428606 None:intergenic
ACAGTAGGACAAACCCCAGC+TGG 0.514116 4.3:+19428105 None:intergenic
GCTGGGGTTTGTCCTACTGT+TGG 0.516701 4.3:-19428102 MS.gene28722:CDS
TGCATCTGAGATTAGTGTAA+TGG 0.517443 4.3:-19427032 MS.gene28722:CDS
GAGAGAAAGACATTGGAGAA+GGG 0.518172 4.3:+19428521 None:intergenic
CATGTTCTTGCTTAGATCAG+TGG 0.519701 4.3:-19428226 MS.gene28722:CDS
AACATGTTACCAGCTCTATG+TGG 0.525316 4.3:+19427355 None:intergenic
TGCAGCATATGATTGATGCT+TGG 0.525800 4.3:+19428340 None:intergenic
GATGGGGTGAGAATGAAAAC+GGG 0.526268 4.3:+19428378 None:intergenic
TTTAAGGTGGGTGAATATGA+AGG 0.526473 4.3:+19428447 None:intergenic
TTGCGAATCAATATTTGGAT+CGG 0.526644 4.3:-19427288 MS.gene28722:CDS
ATTCTTGATAGGGAATCAAT+GGG 0.530524 4.3:-19427973 MS.gene28722:CDS
CTCACATTCAATCCTTATGG+TGG 0.534887 4.3:-19427415 MS.gene28722:CDS
TGGAAGAAGATGATTGAACT+AGG 0.545464 4.3:-19427448 MS.gene28722:CDS
GATATAGGTGTCAATGGAGA+GGG 0.546721 4.3:-19427187 MS.gene28722:CDS
GTACTCAGTAAATTGGAAAG+AGG 0.547618 4.3:-19427323 MS.gene28722:CDS
AACTATAGAGATGTTGATAT+AGG 0.549791 4.3:-19427202 MS.gene28722:CDS
GCCGATATCGAAAATTGGGT+TGG 0.554890 4.3:-19427479 MS.gene28722:CDS
GTTGAATCAGGTGCTACAAT+TGG 0.555094 4.3:-19428174 MS.gene28722:CDS
ATATCGAAAATTGGGTTGGA+TGG 0.562553 4.3:-19427475 MS.gene28722:CDS
CAAAAGAGAAGTTCTTGAAG+AGG 0.567801 4.3:-19427522 MS.gene28722:CDS
CTGAATAGAGAGAAAGACAT+TGG 0.568278 4.3:+19428514 None:intergenic
GGATGTGAGAGATATGAGAT+GGG 0.576189 4.3:+19428361 None:intergenic
AATGAGTGAGATTTCTGAGG+TGG 0.577760 4.3:-19427389 MS.gene28722:CDS
CTAATCTCAGATGCAAGTGA+TGG 0.584295 4.3:+19427040 None:intergenic
TTACCAGCTCTATGTGGGAA+TGG 0.586583 4.3:+19427361 None:intergenic
AAACTTTGATAGGCTTGTAG+AGG 0.593703 4.3:-19427113 MS.gene28722:CDS
GTTGCTGATAAGATACATGA+TGG 0.594648 4.3:-19427787 MS.gene28722:CDS
ATATCAGTCGAAGTTCCTAC+CGG 0.604560 4.3:+19427565 None:intergenic
AGATTGTTGATGTTGATGGA+AGG 0.611403 4.3:-19427996 MS.gene28722:CDS
ACACCATTCCCACATAGAGC+TGG 0.611903 4.3:-19427364 MS.gene28722:CDS
ATATAGGTGTCAATGGAGAG+GGG 0.613762 4.3:-19427186 MS.gene28722:CDS
AAGACACTGGTACTAGAATG+TGG 0.614563 4.3:+19428589 None:intergenic
AACATGTCAAGAACAATGAA+GGG 0.614696 4.3:+19428243 None:intergenic
TCACATTCAATCCTTATGGT+GGG 0.617770 4.3:-19427414 MS.gene28722:CDS
TATGAAGAAGCTAGTATTTG+GGG 0.618664 4.3:-19427154 MS.gene28722:CDS
GTGGTGATGTTGTTCATCAG+TGG 0.621789 4.3:-19427816 MS.gene28722:CDS
GAAATCAGAATCAGAAGTGG+TGG 0.623397 4.3:-19428303 MS.gene28722:CDS
ACATGTTACCAGCTCTATGT+GGG 0.626075 4.3:+19427356 None:intergenic
CTTGAAATCAGAATCAGAAG+TGG 0.627667 4.3:-19428306 MS.gene28722:CDS
TACTATGAAGAATGGAACAA+GGG 0.629238 4.3:+19428614 None:intergenic
TTAGTCCTGCTAAGAGAAAG+GGG 0.631092 4.3:-19427744 MS.gene28722:CDS
TATAGGTGTCAATGGAGAGG+GGG 0.633068 4.3:-19427185 MS.gene28722:CDS
ATACTATGAAGAATGGAACA+AGG 0.635254 4.3:+19428613 None:intergenic
TGGATGTGAGAGATATGAGA+TGG 0.636135 4.3:+19428360 None:intergenic
TGATATAGGTGTCAATGGAG+AGG 0.640685 4.3:-19427188 MS.gene28722:CDS
TGTCCACCAACACCAACAGT+AGG 0.646587 4.3:+19428090 None:intergenic
AGTGGTGGTCATGACTATGA+TGG 0.659640 4.3:-19428288 MS.gene28722:CDS
AAAACATTGGAACAAGGTGG+TGG 0.663778 4.3:-19427835 MS.gene28722:CDS
TCTTGATAGGGAATCAATGG+GGG 0.665119 4.3:-19427971 MS.gene28722:CDS
TTCTTGATAGGGAATCAATG+GGG 0.670213 4.3:-19427972 MS.gene28722:CDS
ACAGAATCTGAAGAAGACAC+TGG 0.698244 4.3:+19428576 None:intergenic
GAAAATGAGTGAGATTTCTG+AGG 0.702809 4.3:-19427392 MS.gene28722:CDS
TTGCTGATAAGATACATGAT+GGG 0.706046 4.3:-19427786 MS.gene28722:CDS
GATGTGAGAGATATGAGATG+GGG 0.755774 4.3:+19428362 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAAAAGATGAATCTTTG+TGG - chr4.3:19427460-19427479 MS.gene28722:CDS 20.0%
!! TATAAAAGATGAATCTTTGT+GGG - chr4.3:19427461-19427480 MS.gene28722:CDS 20.0%
!! TCATATTTGAAAAAATTGCT+TGG + chr4.3:19428587-19428606 None:intergenic 20.0%
!! TGGTATTAATATCATTATGT+TGG + chr4.3:19427110-19427129 None:intergenic 20.0%
!!! GTTATCTGTTGATAATATTT+TGG - chr4.3:19427632-19427651 MS.gene28722:CDS 20.0%
!!! TTTTAGAGTTGAAAAAACAT+TGG - chr4.3:19427809-19427828 MS.gene28722:CDS 20.0%
! AAATTCAGTACTCAGTAAAT+TGG - chr4.3:19428327-19428346 MS.gene28722:CDS 25.0%
! AACTATAGAGATGTTGATAT+AGG - chr4.3:19428455-19428474 MS.gene28722:CDS 25.0%
! ATTTCAAAGGAAACTTTGAT+AGG - chr4.3:19428534-19428553 MS.gene28722:CDS 25.0%
! CAATTGGTGAAGTTTATTAT+AGG - chr4.3:19427499-19427518 MS.gene28722:CDS 25.0%
! GTAACATGATGAGAAAATTT+GGG - chr4.3:19427610-19427629 MS.gene28722:CDS 25.0%
! TTATGAAGAAGCTAGTATTT+GGG - chr4.3:19428502-19428521 MS.gene28722:CDS 25.0%
AAAGGGGAAGAAAACAATTA+AGG - chr4.3:19427929-19427948 MS.gene28722:CDS 30.0%
AACATGTCAAGAACAATGAA+GGG + chr4.3:19427417-19427436 None:intergenic 30.0%
AGCAATGTATTGAAATGAGT+TGG - chr4.3:19428039-19428058 MS.gene28722:CDS 30.0%
ATACTATGAAGAATGGAACA+AGG + chr4.3:19427047-19427066 None:intergenic 30.0%
ATCAATATTTGGATCGGATT+CGG - chr4.3:19428375-19428394 MS.gene28722:CDS 30.0%
ATGTGGAATACTATGAAGAA+TGG + chr4.3:19427054-19427073 None:intergenic 30.0%
ATTCTTGATAGGGAATCAAT+GGG - chr4.3:19427684-19427703 MS.gene28722:CDS 30.0%
CTAAAAACAGTTACAATCTC+AGG + chr4.3:19427795-19427814 None:intergenic 30.0%
GGTAACATGATGAGAAAATT+TGG - chr4.3:19427609-19427628 MS.gene28722:CDS 30.0%
GTTATGAAGAAGCTAGTATT+TGG - chr4.3:19428501-19428520 MS.gene28722:CDS 30.0%
GTTGAAAAAACATTGGAACA+AGG - chr4.3:19427816-19427835 MS.gene28722:CDS 30.0%
TACTATGAAGAATGGAACAA+GGG + chr4.3:19427046-19427065 None:intergenic 30.0%
TATGAAGAAGCTAGTATTTG+GGG - chr4.3:19428503-19428522 MS.gene28722:CDS 30.0%
TGATGTTGCGAATCAATATT+TGG - chr4.3:19428364-19428383 MS.gene28722:CDS 30.0%
TGTTTCTTGGAAGATTAAGT+TGG - chr4.3:19427761-19427780 MS.gene28722:CDS 30.0%
TTGCGAATCAATATTTGGAT+CGG - chr4.3:19428369-19428388 MS.gene28722:CDS 30.0%
TTGCTGATAAGATACATGAT+GGG - chr4.3:19427871-19427890 MS.gene28722:CDS 30.0%
! AATGAGAGTTTTCCTGAATT+GGG - chr4.3:19428005-19428024 MS.gene28722:CDS 30.0%
!! AAGTTCAATGCTTTGTTTCT+TGG - chr4.3:19427954-19427973 MS.gene28722:CDS 30.0%
!! TGGGGTAAAAAGTATTTCAA+AGG - chr4.3:19428521-19428540 MS.gene28722:CDS 30.0%
!!! GTTGTTTTGGTATAACTATC+CGG - chr4.3:19428073-19428092 MS.gene28722:CDS 30.0%
!!! GTTTTGGTGTTATTGTTTCT+TGG - chr4.3:19427748-19427767 MS.gene28722:CDS 30.0%
AAACTTTGATAGGCTTGTAG+AGG - chr4.3:19428544-19428563 MS.gene28722:CDS 35.0%
AGAAGCCGATATCGAAAATT+GGG - chr4.3:19428174-19428193 MS.gene28722:CDS 35.0%
CAAAAGAGAAGTTCTTGAAG+AGG - chr4.3:19428135-19428154 MS.gene28722:CDS 35.0%
CACTTCTGATTCTGATTTCA+AGG + chr4.3:19427353-19427372 None:intergenic 35.0%
CTGAATAGAGAGAAAGACAT+TGG + chr4.3:19427146-19427165 None:intergenic 35.0%
CTTGAAATCAGAATCAGAAG+TGG - chr4.3:19427351-19427370 MS.gene28722:CDS 35.0%
CTTGGTGAATTTGACACATA+AGG + chr4.3:19428422-19428441 None:intergenic 35.0%
GAAAAAACATTGGAACAAGG+TGG - chr4.3:19427819-19427838 MS.gene28722:CDS 35.0%
GAAAATGAGTGAGATTTCTG+AGG - chr4.3:19428265-19428284 MS.gene28722:CDS 35.0%
GAACATGTCAAGAACAATGA+AGG + chr4.3:19427418-19427437 None:intergenic 35.0%
GATGTTGATATAGGTGTCAA+TGG - chr4.3:19428464-19428483 MS.gene28722:CDS 35.0%
GATTCTTGATAGGGAATCAA+TGG - chr4.3:19427683-19427702 MS.gene28722:CDS 35.0%
GCTAAGATTGTTGATGTTGA+TGG - chr4.3:19427657-19427676 MS.gene28722:CDS 35.0%
GTACTCAGTAAATTGGAAAG+AGG - chr4.3:19428334-19428353 MS.gene28722:CDS 35.0%
GTTGCTGATAAGATACATGA+TGG - chr4.3:19427870-19427889 MS.gene28722:CDS 35.0%
GTTTCTGATGTAGGAGTTTA+AGG + chr4.3:19427229-19427248 None:intergenic 35.0%
TAGTTCACATACGAACTTCT+TGG + chr4.3:19428440-19428459 None:intergenic 35.0%
TCACATTCAATCCTTATGGT+GGG - chr4.3:19428243-19428262 MS.gene28722:CDS 35.0%
TCACTCACATTCAATCCTTA+TGG - chr4.3:19428239-19428258 MS.gene28722:CDS 35.0%
TGATGGAAGGATTCTTGATA+GGG - chr4.3:19427674-19427693 MS.gene28722:CDS 35.0%
TGGAAGAAGATGATTGAACT+AGG - chr4.3:19428209-19428228 MS.gene28722:CDS 35.0%
TTCTTGATAGGGAATCAATG+GGG - chr4.3:19427685-19427704 MS.gene28722:CDS 35.0%
TTGATGGAAGGATTCTTGAT+AGG - chr4.3:19427673-19427692 MS.gene28722:CDS 35.0%
TTTCCTGAATTGGGTTTGAT+TGG - chr4.3:19428014-19428033 MS.gene28722:CDS 35.0%
! AGATTGTTGATGTTGATGGA+AGG - chr4.3:19427661-19427680 MS.gene28722:CDS 35.0%
! CGACTGATATTTTGCTTGAA+AGG - chr4.3:19428105-19428124 MS.gene28722:CDS 35.0%
! GAATCTAAGGTTTCTGATGT+AGG + chr4.3:19427238-19427257 None:intergenic 35.0%
! GAATGAGAGTTTTCCTGAAT+TGG - chr4.3:19428004-19428023 MS.gene28722:CDS 35.0%
! GTGAATATGAAGGTGTGTTT+GGG + chr4.3:19427203-19427222 None:intergenic 35.0%
! TAGTGGATGAGTTGAATCTA+AGG + chr4.3:19427251-19427270 None:intergenic 35.0%
! TCCAACCCAATTTTCGATAT+CGG + chr4.3:19428182-19428201 None:intergenic 35.0%
! TGCATCTGAGATTAGTGTAA+TGG - chr4.3:19428625-19428644 MS.gene28722:CDS 35.0%
! TTTAAGGTGGGTGAATATGA+AGG + chr4.3:19427213-19427232 None:intergenic 35.0%
! TTTTGGTATAACTATCCGGT+AGG - chr4.3:19428077-19428096 MS.gene28722:CDS 35.0%
!! AAATTGGGTTGGATGGTATA+TGG - chr4.3:19428189-19428208 MS.gene28722:CDS 35.0%
!! AAGTAGGTAACTTCTGAGAT+TGG + chr4.3:19427180-19427199 None:intergenic 35.0%
!! ACATTGGAGAAGGGTATTAT+TGG + chr4.3:19427130-19427149 None:intergenic 35.0%
!! ACTTCTGAGATTGGATTAGA+AGG + chr4.3:19427171-19427190 None:intergenic 35.0%
!! ATATCGAAAATTGGGTTGGA+TGG - chr4.3:19428182-19428201 MS.gene28722:CDS 35.0%
!!! AATGGGGGAAGATGTTTTTT+GGG - chr4.3:19427701-19427720 MS.gene28722:CDS 35.0%
!!! GATGTTTTTTGGGCTATTAG+AGG - chr4.3:19427711-19427730 MS.gene28722:CDS 35.0%
!!! GGATTGATTCAGTGTTGTTT+TGG - chr4.3:19428060-19428079 MS.gene28722:CDS 35.0%
AAAACATTGGAACAAGGTGG+TGG - chr4.3:19427822-19427841 MS.gene28722:CDS 40.0%
AACATGTTACCAGCTCTATG+TGG + chr4.3:19428305-19428324 None:intergenic 40.0%
AAGACACTGGTACTAGAATG+TGG + chr4.3:19427071-19427090 None:intergenic 40.0%
ACAGAATCTGAAGAAGACAC+TGG + chr4.3:19427084-19427103 None:intergenic 40.0%
ACATGTTACCAGCTCTATGT+GGG + chr4.3:19428304-19428323 None:intergenic 40.0%
AGAGAGAAAGACATTGGAGA+AGG + chr4.3:19427140-19427159 None:intergenic 40.0%
AGATGGGGTGAGAATGAAAA+CGG + chr4.3:19427283-19427302 None:intergenic 40.0%
ATATAGGTGTCAATGGAGAG+GGG - chr4.3:19428471-19428490 MS.gene28722:CDS 40.0%
ATATCAGTCGAAGTTCCTAC+CGG + chr4.3:19428095-19428114 None:intergenic 40.0%
CAGAAGCCGATATCGAAAAT+TGG - chr4.3:19428173-19428192 MS.gene28722:CDS 40.0%
CATGTTCTTGCTTAGATCAG+TGG - chr4.3:19427431-19427450 MS.gene28722:CDS 40.0%
CTAATCTCAGATGCAAGTGA+TGG + chr4.3:19428620-19428639 None:intergenic 40.0%
CTCACATTCAATCCTTATGG+TGG - chr4.3:19428242-19428261 MS.gene28722:CDS 40.0%
GAAATCAGAATCAGAAGTGG+TGG - chr4.3:19427354-19427373 MS.gene28722:CDS 40.0%
GAGAGAAAGACATTGGAGAA+GGG + chr4.3:19427139-19427158 None:intergenic 40.0%
GATATAGGTGTCAATGGAGA+GGG - chr4.3:19428470-19428489 MS.gene28722:CDS 40.0%
GATGTGAGAGATATGAGATG+GGG + chr4.3:19427298-19427317 None:intergenic 40.0%
GCTGAGATTAGTAGTGTTCA+TGG - chr4.3:19427525-19427544 MS.gene28722:CDS 40.0%
GGATGTGAGAGATATGAGAT+GGG + chr4.3:19427299-19427318 None:intergenic 40.0%
GTTAGTCCTGCTAAGAGAAA+GGG - chr4.3:19427912-19427931 MS.gene28722:CDS 40.0%
TCACCAATCAAACCCAATTC+AGG + chr4.3:19428020-19428039 None:intergenic 40.0%
TCTGATGTAGGAGTTTAAGG+TGG + chr4.3:19427226-19427245 None:intergenic 40.0%
TCTTGATAGGGAATCAATGG+GGG - chr4.3:19427686-19427705 MS.gene28722:CDS 40.0%
TGATATAGGTGTCAATGGAG+AGG - chr4.3:19428469-19428488 MS.gene28722:CDS 40.0%
TGCAGCATATGATTGATGCT+TGG + chr4.3:19427320-19427339 None:intergenic 40.0%
TGGATGTGAGAGATATGAGA+TGG + chr4.3:19427300-19427319 None:intergenic 40.0%
TGTTAGTCCTGCTAAGAGAA+AGG - chr4.3:19427911-19427930 MS.gene28722:CDS 40.0%
TTAGTCCTGCTAAGAGAAAG+GGG - chr4.3:19427913-19427932 MS.gene28722:CDS 40.0%
! AATGAGTGAGATTTCTGAGG+TGG - chr4.3:19428268-19428287 MS.gene28722:CDS 40.0%
! CTGATGTAGGAGTTTAAGGT+GGG + chr4.3:19427225-19427244 None:intergenic 40.0%
! GAATCTTTGTGGGTTGAATC+AGG - chr4.3:19427471-19427490 MS.gene28722:CDS 40.0%
! GGTGAATATGAAGGTGTGTT+TGG + chr4.3:19427204-19427223 None:intergenic 40.0%
! GTTGAATCAGGTGCTACAAT+TGG - chr4.3:19427483-19427502 MS.gene28722:CDS 40.0%
! TCACTCATTTTCCCACCATA+AGG + chr4.3:19428257-19428276 None:intergenic 40.0%
!! GTGAGAATGAAAACGGGTTT+TGG + chr4.3:19427276-19427295 None:intergenic 40.0%
!! TTGGTGGACATTTTAGTGGT+GGG - chr4.3:19427580-19427599 MS.gene28722:CDS 40.0%
!!! CAATGGGGGAAGATGTTTTT+TGG - chr4.3:19427700-19427719 MS.gene28722:CDS 40.0%
!!! GTTTTTTGGGCTATTAGAGG+TGG - chr4.3:19427714-19427733 MS.gene28722:CDS 40.0%
AGTGGTGGTCATGACTATGA+TGG - chr4.3:19427369-19427388 MS.gene28722:CDS 45.0%
GATGGGGTGAGAATGAAAAC+GGG + chr4.3:19427282-19427301 None:intergenic 45.0%
GCCGATATCGAAAATTGGGT+TGG - chr4.3:19428178-19428197 MS.gene28722:CDS 45.0%
GTTTGTCCTACTGTTGGTGT+TGG - chr4.3:19427561-19427580 MS.gene28722:CDS 45.0%
TATAGGTGTCAATGGAGAGG+GGG - chr4.3:19428472-19428491 MS.gene28722:CDS 45.0%
TTACCAGCTCTATGTGGGAA+TGG + chr4.3:19428299-19428318 None:intergenic 45.0%
TTCTTCCCCTTTCTCTTAGC+AGG + chr4.3:19427921-19427940 None:intergenic 45.0%
! AGTGTTCATGGTTTTCCAGC+TGG - chr4.3:19427537-19427556 MS.gene28722:CDS 45.0%
! GTGGTGATGTTGTTCATCAG+TGG - chr4.3:19427841-19427860 MS.gene28722:CDS 45.0%
! GTGTTCATGGTTTTCCAGCT+GGG - chr4.3:19427538-19427557 MS.gene28722:CDS 45.0%
! TGAAGGTGTGTTTGGGAAGT+AGG + chr4.3:19427196-19427215 None:intergenic 45.0%
! TGTTCATGGTTTTCCAGCTG+GGG - chr4.3:19427539-19427558 MS.gene28722:CDS 45.0%
! TTTTGGGCTATTAGAGGTGG+TGG - chr4.3:19427717-19427736 MS.gene28722:CDS 45.0%
!! GTTGGTGGACATTTTAGTGG+TGG - chr4.3:19427579-19427598 MS.gene28722:CDS 45.0%
!! TGGTGGACATTTTAGTGGTG+GGG - chr4.3:19427581-19427600 MS.gene28722:CDS 45.0%
!!! GAAAACGGGTTTTGGAGTAG+TGG + chr4.3:19427268-19427287 None:intergenic 45.0%
!!! GGTGTTGGTGGACATTTTAG+TGG - chr4.3:19427576-19427595 MS.gene28722:CDS 45.0%
ACACCATTCCCACATAGAGC+TGG - chr4.3:19428293-19428312 MS.gene28722:CDS 50.0%
TGTCCACCAACACCAACAGT+AGG + chr4.3:19427570-19427589 None:intergenic 50.0%
!! CATTTTAGTGGTGGGGGGTA+TGG - chr4.3:19427588-19427607 MS.gene28722:CDS 50.0%
!! GGTGGACATTTTAGTGGTGG+GGG - chr4.3:19427582-19427601 MS.gene28722:CDS 50.0%
!! GTGGACATTTTAGTGGTGGG+GGG - chr4.3:19427583-19427602 MS.gene28722:CDS 50.0%
!! TGTCCTACTGTTGGTGTTGG+TGG - chr4.3:19427564-19427583 MS.gene28722:CDS 50.0%
ACAGTAGGACAAACCCCAGC+TGG + chr4.3:19427555-19427574 None:intergenic 55.0%
GCTGGGGTTTGTCCTACTGT+TGG - chr4.3:19427555-19427574 MS.gene28722:CDS 55.0%
GTCAATGGAGAGGGGGATGT+TGG - chr4.3:19428479-19428498 MS.gene28722:CDS 55.0%
! TGGGCTATTAGAGGTGGTGG+TGG - chr4.3:19427720-19427739 MS.gene28722:CDS 55.0%
!!! GGTGGTGGTGGAGCTAGTTT+TGG - chr4.3:19427732-19427751 MS.gene28722:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 19427024 19428655 19427024 ID=MS.gene28722
chr4.3 mRNA 19427024 19428655 19427024 ID=MS.gene28722.t1;Parent=MS.gene28722
chr4.3 exon 19427024 19428655 19427024 ID=MS.gene28722.t1.exon1;Parent=MS.gene28722.t1
chr4.3 CDS 19427024 19428655 19427024 ID=cds.MS.gene28722.t1;Parent=MS.gene28722.t1
Gene Sequence

>MS.gene28722

ATGCATACAATTGGTGCATCCCTTGTTCCATTCTTCATAGTATTCCACATTCTAGTACCAGTGTCTTCTTCAGATTCTGTGATCCAACATAATGATATTAATACCAATAATACCCTTCTCCAATGTCTTTCTCTCTATTCAGAACCTTCTAATCCAATCTCAGAAGTTACCTACTTCCCAAACACACCTTCATATTCACCCACCTTAAACTCCTACATCAGAAACCTTAGATTCAACTCATCCACTACTCCAAAACCCGTTTTCATTCTCACCCCATCTCATATCTCTCACATCCAAGCATCAATCATATGCTGCAAAAAATTCAACCTTGAAATCAGAATCAGAAGTGGTGGTCATGACTATGATGGTCTTTCTTATGTTTCAAGAAAACCCTTCATTGTTCTTGACATGTTCTTGCTTAGATCAGTGGTTATTGATATAAAAGATGAATCTTTGTGGGTTGAATCAGGTGCTACAATTGGTGAAGTTTATTATAGGATTGCTGAGATTAGTAGTGTTCATGGTTTTCCAGCTGGGGTTTGTCCTACTGTTGGTGTTGGTGGACATTTTAGTGGTGGGGGGTATGGTAACATGATGAGAAAATTTGGGTTATCTGTTGATAATATTTTGGATGCTAAGATTGTTGATGTTGATGGAAGGATTCTTGATAGGGAATCAATGGGGGAAGATGTTTTTTGGGCTATTAGAGGTGGTGGTGGAGCTAGTTTTGGTGTTATTGTTTCTTGGAAGATTAAGTTGGTTTCTGTGCCTGAGATTGTAACTGTTTTTAGAGTTGAAAAAACATTGGAACAAGGTGGTGGTGATGTTGTTCATCAGTGGCAAAATGTTGCTGATAAGATACATGATGGGTTGTTTATTAGAGTTGTTGTTAGTCCTGCTAAGAGAAAGGGGAAGAAAACAATTAAGGCTAAGTTCAATGCTTTGTTTCTTGGAAATGCAGATGAGTTGCTTGATGTGATGAATGAGAGTTTTCCTGAATTGGGTTTGATTGGTGAGCAATGTATTGAAATGAGTTGGATTGATTCAGTGTTGTTTTGGTATAACTATCCGGTAGGAACTTCGACTGATATTTTGCTTGAAAGGCATTCATCAAAAGAGAAGTTCTTGAAGAGGAAATCAGATTATGTGCAGAAGCCGATATCGAAAATTGGGTTGGATGGTATATGGAAGAAGATGATTGAACTAGGAAAGATTTCACTCACATTCAATCCTTATGGTGGGAAAATGAGTGAGATTTCTGAGGTGGAAACACCATTCCCACATAGAGCTGGTAACATGTTTAAAATTCAGTACTCAGTAAATTGGAAAGAGGAAAGTAATGATGTTGCGAATCAATATTTGGATCGGATTCGGAAGCTTTATGATTACATGACACCTTATGTGTCAAATTCACCAAGAAGTTCGTATGTGAACTATAGAGATGTTGATATAGGTGTCAATGGAGAGGGGGATGTTGGTTATGAAGAAGCTAGTATTTGGGGTAAAAAGTATTTCAAAGGAAACTTTGATAGGCTTGTAGAGGTAAAGACTGCAATTGATCCAAGCAATTTTTTCAAATATGAACAAAGTATTCCATCACTTGCATCTGAGATTAGTGTAATGGCAGAATAG

Protein sequence

>MS.gene28722.t1

MHTIGASLVPFFIVFHILVPVSSSDSVIQHNDINTNNTLLQCLSLYSEPSNPISEVTYFPNTPSYSPTLNSYIRNLRFNSSTTPKPVFILTPSHISHIQASIICCKKFNLEIRIRSGGHDYDGLSYVSRKPFIVLDMFLLRSVVIDIKDESLWVESGATIGEVYYRIAEISSVHGFPAGVCPTVGVGGHFSGGGYGNMMRKFGLSVDNILDAKIVDVDGRILDRESMGEDVFWAIRGGGGASFGVIVSWKIKLVSVPEIVTVFRVEKTLEQGGGDVVHQWQNVADKIHDGLFIRVVVSPAKRKGKKTIKAKFNALFLGNADELLDVMNESFPELGLIGEQCIEMSWIDSVLFWYNYPVGTSTDILLERHSSKEKFLKRKSDYVQKPISKIGLDGIWKKMIELGKISLTFNPYGGKMSEISEVETPFPHRAGNMFKIQYSVNWKEESNDVANQYLDRIRKLYDYMTPYVSNSPRSSYVNYRDVDIGVNGEGDVGYEEASIWGKKYFKGNFDRLVEVKTAIDPSNFFKYEQSIPSLASEISVMAE