Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28778.t1 | XP_013450385.1 | 100 | 219 | 0 | 0 | 1 | 219 | 1 | 219 | 9.20E-104 | 386.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28778.t1 | P49693 | 84.3 | 217 | 23 | 2 | 1 | 215 | 1 | 208 | 7.1e-89 | 328.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28778.t1 | I3SA92 | 100.0 | 219 | 0 | 0 | 1 | 219 | 1 | 219 | 6.6e-104 | 386.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene28778 | MS.gene22507 | PPI |
| MS.gene28778 | MS.gene07018 | PPI |
| MS.gene28778 | MS.gene025692 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28778.t1 | MTR_7g108955 | 100.000 | 219 | 0 | 0 | 1 | 219 | 1 | 219 | 3.29e-160 | 441 |
| MS.gene28778.t1 | MTR_7g108955 | 100.000 | 208 | 0 | 0 | 1 | 208 | 1 | 208 | 5.99e-153 | 422 |
| MS.gene28778.t1 | MTR_1g087910 | 98.925 | 186 | 2 | 0 | 1 | 186 | 1 | 186 | 6.10e-123 | 347 |
| MS.gene28778.t1 | MTR_1g087910 | 98.925 | 186 | 2 | 0 | 1 | 186 | 1 | 186 | 8.07e-123 | 347 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28778.t1 | AT3G16780 | 82.791 | 215 | 31 | 3 | 1 | 215 | 1 | 209 | 6.91e-124 | 349 |
| MS.gene28778.t1 | AT1G02780 | 91.489 | 188 | 16 | 0 | 1 | 188 | 1 | 188 | 1.63e-116 | 331 |
| MS.gene28778.t1 | AT4G02230 | 91.489 | 188 | 16 | 0 | 1 | 188 | 1 | 188 | 2.47e-115 | 328 |
| MS.gene28778.t1 | AT4G16030 | 42.953 | 149 | 33 | 7 | 57 | 194 | 6 | 113 | 9.99e-18 | 76.3 |
Find 67 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCACGGCTGGCCTTGTTCT+TGG | 0.184984 | 7.4:+6240642 | None:intergenic |
| TAACCAGCTTCCTTATGTTT+TGG | 0.262188 | 7.4:+6241742 | None:intergenic |
| CTCTCTAGCCTTCTCAGCTT+TGG | 0.269286 | 7.4:+6240699 | None:intergenic |
| GAGATTTCGTTAACTTCATT+TGG | 0.301140 | 7.4:+6241868 | None:intergenic |
| GGCCTTGTTCTTGGCACGTT+TGG | 0.315875 | 7.4:+6240651 | None:intergenic |
| ATTATAATACTCACTGGGTC+TGG | 0.332335 | 7.4:+6240386 | None:intergenic |
| TGTGGGAAGCCTTGCCTCTC+TGG | 0.339458 | 7.4:+6240882 | None:intergenic |
| TTGTAAAATGTTTAGGGTCC+TGG | 0.366808 | 7.4:-6240466 | MS.gene28778:intron |
| AAAGGAAGACACTCTGGATA+TGG | 0.389292 | 7.4:-6241642 | MS.gene28778:intron |
| AGTGCGGTCGTGGCAAAGTT+TGG | 0.396257 | 7.4:-6241897 | MS.gene28778:CDS |
| GTTGGCTTTGTTGCAGCAAC+AGG | 0.405850 | 7.4:+6240409 | None:intergenic |
| TGACATGTACATGAAGGTTA+AGG | 0.407532 | 7.4:-6240770 | MS.gene28778:CDS |
| TTTGAATGTGCATAGGTAAG+AGG | 0.427942 | 7.4:-6240912 | MS.gene28778:intron |
| AAACATAAGGAAGCTGGTTA+AGG | 0.436979 | 7.4:-6241739 | MS.gene28778:CDS |
| GACGTTTGCTCCGCAAGTAC+CGG | 0.438844 | 7.4:-6240825 | MS.gene28778:CDS |
| TCTGCTGGCTTCTCTCCTCC+AGG | 0.456457 | 7.4:+6240448 | None:intergenic |
| TGGCACGTTTGGCCTCAAAC+TGG | 0.457561 | 7.4:+6240662 | None:intergenic |
| AGCGTTCTCAAGTGCGGTCG+TGG | 0.462752 | 7.4:-6241907 | MS.gene28778:CDS |
| TTAAGGATGGGTTTATCATC+AGG | 0.469316 | 7.4:-6241722 | MS.gene28778:CDS |
| ACGAGACCTGGAGTGAATCT+TGG | 0.472398 | 7.4:+6241692 | None:intergenic |
| TAAGAATAAGAGAGTTCTGA+TGG | 0.474240 | 7.4:-6240737 | MS.gene28778:CDS |
| AGCATGCTTCCTCTCACGGC+TGG | 0.480022 | 7.4:+6240630 | None:intergenic |
| TTATAATACTCACTGGGTCT+GGG | 0.483209 | 7.4:+6240387 | None:intergenic |
| GACATGTACATGAAGGTTAA+GGG | 0.489265 | 7.4:-6240769 | MS.gene28778:CDS |
| TCCTAGCATGCTTCCTCTCA+CGG | 0.495294 | 7.4:+6240626 | None:intergenic |
| AATACTCACTGGGTCTGGGT+TGG | 0.502471 | 7.4:+6240391 | None:intergenic |
| GACCTTGTCAGACCAGTTTG+AGG | 0.515108 | 7.4:-6240674 | MS.gene28778:CDS |
| AAGAGGAAAGGAAGACACTC+TGG | 0.516416 | 7.4:-6241648 | MS.gene28778:CDS |
| GCAGCACTAGGAGCTTCTGC+TGG | 0.526670 | 7.4:+6240433 | None:intergenic |
| TGTCAATCTTCTTAGCCTCC+CGG | 0.527932 | 7.4:+6240806 | None:intergenic |
| ACGTTTGCTCCGCAAGTACC+GGG | 0.538079 | 7.4:-6240824 | MS.gene28778:CDS |
| TCTTAGCCTCCCGGTACTTG+CGG | 0.539366 | 7.4:+6240815 | None:intergenic |
| CATTCTACGAGCACGAGACC+TGG | 0.539613 | 7.4:+6241680 | None:intergenic |
| ATAAGGAAGCTGGTTAAGGA+TGG | 0.542795 | 7.4:-6241735 | MS.gene28778:CDS |
| GCCGTGAGAGGAAGCATGCT+AGG | 0.550143 | 7.4:-6240627 | MS.gene28778:CDS |
| TCACAAGTCCAAAGCTGAGA+AGG | 0.552682 | 7.4:-6240707 | MS.gene28778:CDS |
| GTCTCGTGCTCGTAGAATGA+AGG | 0.553438 | 7.4:-6241676 | MS.gene28778:CDS |
| ATGAAGGAAGCTAAGAGGAA+AGG | 0.554411 | 7.4:-6241660 | MS.gene28778:CDS |
| AATGTGCATAGGTAAGAGGA+AGG | 0.560538 | 7.4:-6240908 | MS.gene28778:intron |
| TAAGGAAGCTGGTTAAGGAT+GGG | 0.561785 | 7.4:-6241734 | MS.gene28778:CDS |
| GTAGAATGAAGGAAGCTAAG+AGG | 0.564014 | 7.4:-6241665 | MS.gene28778:CDS |
| GCAGCAACAGGTGCAGCACT+AGG | 0.565218 | 7.4:+6240421 | None:intergenic |
| ACCGCAAAAGAAATCAAAGA+AGG | 0.568261 | 7.4:-6240290 | MS.gene28778:CDS |
| TGAGAGGAAGCATGCTAGGA+GGG | 0.573502 | 7.4:-6240623 | MS.gene28778:CDS |
| AGAACAAGGCCAGCCGTGAG+AGG | 0.576244 | 7.4:-6240639 | MS.gene28778:CDS |
| AGGCCAAAACATAAGGAAGC+TGG | 0.578002 | 7.4:-6241745 | MS.gene28778:CDS |
| ACTTGAGAACGCTGGAAGCG+AGG | 0.578193 | 7.4:+6241917 | None:intergenic |
| GGCCTCAAACTGGTCTGACA+AGG | 0.581380 | 7.4:+6240672 | None:intergenic |
| TTGCAATTTGAGGGAGACCA+TGG | 0.583099 | 7.4:+6241945 | None:intergenic |
| GGCCAAACGTGCCAAGAACA+AGG | 0.590924 | 7.4:-6240653 | MS.gene28778:CDS |
| TAACCTTCATGTACATGTCA+TGG | 0.601477 | 7.4:+6240773 | None:intergenic |
| GACCTGGAGTGAATCTTGGT+GGG | 0.604962 | 7.4:+6241696 | None:intergenic |
| AACCCACCAAGATTCACTCC+AGG | 0.614800 | 7.4:-6241698 | MS.gene28778:CDS |
| TGAAGTTAACGAAATCTCCA+TGG | 0.615795 | 7.4:-6241863 | MS.gene28778:CDS |
| AGACCTGGAGTGAATCTTGG+TGG | 0.619616 | 7.4:+6241695 | None:intergenic |
| ACGACCGCACTTGAGAACGC+TGG | 0.620586 | 7.4:+6241909 | None:intergenic |
| GTGAGAGGAAGCATGCTAGG+AGG | 0.624464 | 7.4:-6240624 | MS.gene28778:CDS |
| GCTTCCAGCGTTCTCAAGTG+CGG | 0.631493 | 7.4:-6241913 | MS.gene28778:CDS |
| TAAAATGTTTAGGGTCCTGG+AGG | 0.638656 | 7.4:-6240463 | MS.gene28778:intron |
| CAAGCAATCTCAGACTGCAG+CGG | 0.641887 | 7.4:+6240267 | None:intergenic |
| TAGCTTACGAGAATTAGCCA+TGG | 0.650085 | 7.4:+6241846 | None:intergenic |
| GTACCATGACATGTACATGA+AGG | 0.655137 | 7.4:-6240776 | MS.gene28778:CDS |
| GAGGAAGCATGCTAGGAGGG+AGG | 0.658603 | 7.4:-6240620 | MS.gene28778:CDS |
| GGAAGGGTACCAGAGAGGCA+AGG | 0.658732 | 7.4:-6240891 | MS.gene28778:CDS |
| TAAGAGGAAGGGTACCAGAG+AGG | 0.678708 | 7.4:-6240896 | MS.gene28778:CDS |
| ATGTGCATAGGTAAGAGGAA+GGG | 0.705490 | 7.4:-6240907 | MS.gene28778:intron |
| TTTGCTCCGCAAGTACCGGG+AGG | 0.739195 | 7.4:-6240821 | MS.gene28778:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTATAAACAAACAAAA+TGG | + | chr7.4:6240744-6240763 | None:intergenic | 10.0% |
| !!! | ATTCTTTTTGAAATTATTAA+TGG | - | chr7.4:6241714-6241733 | MS.gene28778:CDS | 10.0% |
| !! | AATAAATTATAATACTCACT+GGG | + | chr7.4:6241841-6241860 | None:intergenic | 15.0% |
| !! | ATCTATTCTTATTATGATTT+AGG | - | chr7.4:6240641-6240660 | MS.gene28778:CDS | 15.0% |
| !! | TAATAATTGTTTGAAAACTA+TGG | - | chr7.4:6241087-6241106 | MS.gene28778:intron | 15.0% |
| !!! | TTTTCTTTGTAAAATGTTTA+GGG | - | chr7.4:6241747-6241766 | MS.gene28778:intron | 15.0% |
| !! | AAAGAATTTCAAGAAATCAT+AGG | + | chr7.4:6241648-6241667 | None:intergenic | 20.0% |
| !! | ATGTATTTCAGTTTACAAAA+TGG | - | chr7.4:6241052-6241071 | MS.gene28778:intron | 20.0% |
| !! | GAATAAATTATAATACTCAC+TGG | + | chr7.4:6241842-6241861 | None:intergenic | 20.0% |
| !!! | AAAGTTGATTTTGATTTTGT+AGG | - | chr7.4:6240454-6240473 | MS.gene28778:CDS | 20.0% |
| !!! | CTAAACATTTTACAAAGAAA+AGG | + | chr7.4:6241748-6241767 | None:intergenic | 20.0% |
| !!! | CTTTTCTTTGTAAAATGTTT+AGG | - | chr7.4:6241746-6241765 | MS.gene28778:CDS | 20.0% |
| ! | ACATAGATGTATATGATTTG+AGG | - | chr7.4:6241672-6241691 | MS.gene28778:CDS | 25.0% |
| ! | GAAATACGAGTTTACATTTA+TGG | - | chr7.4:6241218-6241237 | MS.gene28778:intron | 25.0% |
| ! | TTAGGTTATACACTCAAAAT+AGG | - | chr7.4:6240659-6240678 | MS.gene28778:CDS | 25.0% |
| !! | ATTTAAAATGAAGCTAATCG+AGG | + | chr7.4:6240623-6240642 | None:intergenic | 25.0% |
| !!! | TGAAATACATTTTGTTGTGA+CGG | + | chr7.4:6241042-6241061 | None:intergenic | 25.0% |
| AAAAACTGTCAACAATTCCA+AGG | + | chr7.4:6241113-6241132 | None:intergenic | 30.0% | |
| GAGATTTCGTTAACTTCATT+TGG | + | chr7.4:6240354-6240373 | None:intergenic | 30.0% | |
| TTAAACAATCATGCATAGCA+GGG | + | chr7.4:6241890-6241909 | None:intergenic | 30.0% | |
| TTTAAACAATCATGCATAGC+AGG | + | chr7.4:6241891-6241910 | None:intergenic | 30.0% | |
| ! | AACTAATCAATCTAAGACAG+TGG | + | chr7.4:6240964-6240983 | None:intergenic | 30.0% |
| ! | ATTTTGTAGGCCAAAACATA+AGG | - | chr7.4:6240467-6240486 | MS.gene28778:intron | 30.0% |
| ! | CTCATCCAAAGAATTTTTGT+GGG | + | chr7.4:6241357-6241376 | None:intergenic | 30.0% |
| ! | GGAGTGAAAAGTTAACATTT+TGG | + | chr7.4:6241021-6241040 | None:intergenic | 30.0% |
| ! | TAAGAATAAGAGAGTTCTGA+TGG | - | chr7.4:6241482-6241501 | MS.gene28778:intron | 30.0% |
| !! | GTTAACATTTTGGTGTGAAA+AGG | + | chr7.4:6241011-6241030 | None:intergenic | 30.0% |
| AAACATAAGGAAGCTGGTTA+AGG | - | chr7.4:6240480-6240499 | MS.gene28778:intron | 35.0% | |
| AAATGAAGCTAATCGAGGTT+AGG | + | chr7.4:6240618-6240637 | None:intergenic | 35.0% | |
| AATGAAGCTAATCGAGGTTA+GGG | + | chr7.4:6240617-6240636 | None:intergenic | 35.0% | |
| ACCGCAAAAGAAATCAAAGA+AGG | - | chr7.4:6241929-6241948 | MS.gene28778:CDS | 35.0% | |
| ACGAGTTTACATTTATGGAC+TGG | - | chr7.4:6241223-6241242 | MS.gene28778:intron | 35.0% | |
| ATTATAATACTCACTGGGTC+TGG | + | chr7.4:6241836-6241855 | None:intergenic | 35.0% | |
| CCACAAAAATTCTTTGGATG+AGG | - | chr7.4:6241355-6241374 | MS.gene28778:intron | 35.0% | |
| GACATGTACATGAAGGTTAA+GGG | - | chr7.4:6241450-6241469 | MS.gene28778:intron | 35.0% | |
| GTGTTTGTTTGAATGTGCAT+AGG | - | chr7.4:6241300-6241319 | MS.gene28778:intron | 35.0% | |
| TAACCTTCATGTACATGTCA+TGG | + | chr7.4:6241449-6241468 | None:intergenic | 35.0% | |
| TGAAGTTAACGAAATCTCCA+TGG | - | chr7.4:6240356-6240375 | MS.gene28778:intron | 35.0% | |
| TGACATGTACATGAAGGTTA+AGG | - | chr7.4:6241449-6241468 | MS.gene28778:intron | 35.0% | |
| TTACTGAGTTGCTCATCAAT+TGG | - | chr7.4:6241164-6241183 | MS.gene28778:intron | 35.0% | |
| TTATAATACTCACTGGGTCT+GGG | + | chr7.4:6241835-6241854 | None:intergenic | 35.0% | |
| TTGTTTGAAAACTATGGCCT+TGG | - | chr7.4:6241093-6241112 | MS.gene28778:intron | 35.0% | |
| TTTGAATGTGCATAGGTAAG+AGG | - | chr7.4:6241307-6241326 | MS.gene28778:intron | 35.0% | |
| ! | CCTCATCCAAAGAATTTTTG+TGG | + | chr7.4:6241358-6241377 | None:intergenic | 35.0% |
| ! | TAACCAGCTTCCTTATGTTT+TGG | + | chr7.4:6240480-6240499 | None:intergenic | 35.0% |
| ! | TTAAGGATGGGTTTATCATC+AGG | - | chr7.4:6240497-6240516 | MS.gene28778:intron | 35.0% |
| ! | TTGTAAAATGTTTAGGGTCC+TGG | - | chr7.4:6241753-6241772 | MS.gene28778:intron | 35.0% |
| !! | GCCTTCTTTGATTTCTTTTG+CGG | + | chr7.4:6241933-6241952 | None:intergenic | 35.0% |
| AAAGGAAGACACTCTGGATA+TGG | - | chr7.4:6240577-6240596 | MS.gene28778:intron | 40.0% | |
| AATGTGCATAGGTAAGAGGA+AGG | - | chr7.4:6241311-6241330 | MS.gene28778:intron | 40.0% | |
| ATAAGGAAGCTGGTTAAGGA+TGG | - | chr7.4:6240484-6240503 | MS.gene28778:intron | 40.0% | |
| ATATCTCTAGATGACCAGAC+AGG | + | chr7.4:6241262-6241281 | None:intergenic | 40.0% | |
| ATGAAGCTAATCGAGGTTAG+GGG | + | chr7.4:6240616-6240635 | None:intergenic | 40.0% | |
| ATGAAGGAAGCTAAGAGGAA+AGG | - | chr7.4:6240559-6240578 | MS.gene28778:intron | 40.0% | |
| ATGTGCATAGGTAAGAGGAA+GGG | - | chr7.4:6241312-6241331 | MS.gene28778:intron | 40.0% | |
| GGCTTCCCACAAAAATTCTT+TGG | - | chr7.4:6241349-6241368 | MS.gene28778:intron | 40.0% | |
| GTACCATGACATGTACATGA+AGG | - | chr7.4:6241443-6241462 | MS.gene28778:intron | 40.0% | |
| GTAGAATGAAGGAAGCTAAG+AGG | - | chr7.4:6240554-6240573 | MS.gene28778:intron | 40.0% | |
| TAAGGAAGCTGGTTAAGGAT+GGG | - | chr7.4:6240485-6240504 | MS.gene28778:intron | 40.0% | |
| TAGCTTACGAGAATTAGCCA+TGG | + | chr7.4:6240376-6240395 | None:intergenic | 40.0% | |
| ! | TAAAATGTTTAGGGTCCTGG+AGG | - | chr7.4:6241756-6241775 | MS.gene28778:intron | 40.0% |
| AACAATCATGCATAGCAGGG+CGG | + | chr7.4:6241887-6241906 | None:intergenic | 45.0% | |
| AAGAGGAAAGGAAGACACTC+TGG | - | chr7.4:6240571-6240590 | MS.gene28778:intron | 45.0% | |
| AGGCCAAAACATAAGGAAGC+TGG | - | chr7.4:6240474-6240493 | MS.gene28778:intron | 45.0% | |
| GAAGACACTCTGGATATGGT+TGG | - | chr7.4:6240581-6240600 | MS.gene28778:intron | 45.0% | |
| TCACAAGTCCAAAGCTGAGA+AGG | - | chr7.4:6241512-6241531 | MS.gene28778:intron | 45.0% | |
| TGTCAATCTTCTTAGCCTCC+CGG | + | chr7.4:6241416-6241435 | None:intergenic | 45.0% | |
| !! | GAGGCGCTTTTGCAATTTGA+GGG | + | chr7.4:6240286-6240305 | None:intergenic | 45.0% |
| !!! | AATAAATTTTATTTTAAGAT+CGG | + | chr7.4:6240792-6240811 | None:intergenic | 5.0% |
| AACCCACCAAGATTCACTCC+AGG | - | chr7.4:6240521-6240540 | MS.gene28778:intron | 50.0% | |
| AATACTCACTGGGTCTGGGT+TGG | + | chr7.4:6241831-6241850 | None:intergenic | 50.0% | |
| ACGAGACCTGGAGTGAATCT+TGG | + | chr7.4:6240530-6240549 | None:intergenic | 50.0% | |
| AGACCTGGAGTGAATCTTGG+TGG | + | chr7.4:6240527-6240546 | None:intergenic | 50.0% | |
| GACCTGGAGTGAATCTTGGT+GGG | + | chr7.4:6240526-6240545 | None:intergenic | 50.0% | |
| GACCTTGTCAGACCAGTTTG+AGG | - | chr7.4:6241545-6241564 | MS.gene28778:intron | 50.0% | |
| GCTCATAGCATGTTCCTGTC+TGG | - | chr7.4:6241245-6241264 | MS.gene28778:intron | 50.0% | |
| GTCTCGTGCTCGTAGAATGA+AGG | - | chr7.4:6240543-6240562 | MS.gene28778:intron | 50.0% | |
| TCCTAGCATGCTTCCTCTCA+CGG | + | chr7.4:6241596-6241615 | None:intergenic | 50.0% | |
| ! | CTCTCTAGCCTTCTCAGCTT+TGG | + | chr7.4:6241523-6241542 | None:intergenic | 50.0% |
| ! | TGAGAGGAAGCATGCTAGGA+GGG | - | chr7.4:6241596-6241615 | MS.gene28778:intron | 50.0% |
| !! | CGAGGCGCTTTTGCAATTTG+AGG | + | chr7.4:6240287-6240306 | None:intergenic | 50.0% |
| !! | GTTGGCTTTGTTGCAGCAAC+AGG | + | chr7.4:6241813-6241832 | None:intergenic | 50.0% |
| !! | TAAGAGGAAGGGTACCAGAG+AGG | - | chr7.4:6241323-6241342 | MS.gene28778:intron | 50.0% |
| ACGTTTGCTCCGCAAGTACC+GGG | - | chr7.4:6241395-6241414 | MS.gene28778:intron | 55.0% | |
| ACTTGAGAACGCTGGAAGCG+AGG | + | chr7.4:6240305-6240324 | None:intergenic | 55.0% | |
| AGTGCGGTCGTGGCAAAGTT+TGG | - | chr7.4:6240322-6240341 | MS.gene28778:intron | 55.0% | |
| ATCATGCATAGCAGGGCGGA+AGG | + | chr7.4:6241883-6241902 | None:intergenic | 55.0% | |
| CATTCTACGAGCACGAGACC+TGG | + | chr7.4:6240542-6240561 | None:intergenic | 55.0% | |
| GACGTTTGCTCCGCAAGTAC+CGG | - | chr7.4:6241394-6241413 | MS.gene28778:intron | 55.0% | |
| GCTTCCAGCGTTCTCAAGTG+CGG | - | chr7.4:6240306-6240325 | MS.gene28778:intron | 55.0% | |
| GGCCAAACGTGCCAAGAACA+AGG | - | chr7.4:6241566-6241585 | MS.gene28778:intron | 55.0% | |
| TCTTAGCCTCCCGGTACTTG+CGG | + | chr7.4:6241407-6241426 | None:intergenic | 55.0% | |
| TGGCACGTTTGGCCTCAAAC+TGG | + | chr7.4:6241560-6241579 | None:intergenic | 55.0% | |
| ! | GGCCTCAAACTGGTCTGACA+AGG | + | chr7.4:6241550-6241569 | None:intergenic | 55.0% |
| ! | GTGAGAGGAAGCATGCTAGG+AGG | - | chr7.4:6241595-6241614 | MS.gene28778:intron | 55.0% |
| !! | GGCCTTGTTCTTGGCACGTT+TGG | + | chr7.4:6241571-6241590 | None:intergenic | 55.0% |
| ACGACCGCACTTGAGAACGC+TGG | + | chr7.4:6240313-6240332 | None:intergenic | 60.0% | |
| AGAACAAGGCCAGCCGTGAG+AGG | - | chr7.4:6241580-6241599 | MS.gene28778:intron | 60.0% | |
| AGCATGCTTCCTCTCACGGC+TGG | + | chr7.4:6241592-6241611 | None:intergenic | 60.0% | |
| AGCGTTCTCAAGTGCGGTCG+TGG | - | chr7.4:6240312-6240331 | MS.gene28778:intron | 60.0% | |
| GCAGCAACAGGTGCAGCACT+AGG | + | chr7.4:6241801-6241820 | None:intergenic | 60.0% | |
| GCAGCACTAGGAGCTTCTGC+TGG | + | chr7.4:6241789-6241808 | None:intergenic | 60.0% | |
| TGTGGGAAGCCTTGCCTCTC+TGG | + | chr7.4:6241340-6241359 | None:intergenic | 60.0% | |
| ! | GAGGAAGCATGCTAGGAGGG+AGG | - | chr7.4:6241599-6241618 | MS.gene28778:intron | 60.0% |
| ! | GCCGTGAGAGGAAGCATGCT+AGG | - | chr7.4:6241592-6241611 | MS.gene28778:intron | 60.0% |
| !! | CTCACGGCTGGCCTTGTTCT+TGG | + | chr7.4:6241580-6241599 | None:intergenic | 60.0% |
| !! | GGAAGGGTACCAGAGAGGCA+AGG | - | chr7.4:6241328-6241347 | MS.gene28778:intron | 60.0% |
| !! | TCTGCTGGCTTCTCTCCTCC+AGG | + | chr7.4:6241774-6241793 | None:intergenic | 60.0% |
| !! | TTTGCTCCGCAAGTACCGGG+AGG | - | chr7.4:6241398-6241417 | MS.gene28778:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 6240276 | 6241965 | 6240276 | ID=MS.gene28778 |
| chr7.4 | mRNA | 6240276 | 6241965 | 6240276 | ID=MS.gene28778.t1;Parent=MS.gene28778 |
| chr7.4 | exon | 6241854 | 6241965 | 6241854 | ID=MS.gene28778.t1.exon1;Parent=MS.gene28778.t1 |
| chr7.4 | CDS | 6241854 | 6241965 | 6241854 | ID=cds.MS.gene28778.t1;Parent=MS.gene28778.t1 |
| chr7.4 | exon | 6241643 | 6241765 | 6241643 | ID=MS.gene28778.t1.exon2;Parent=MS.gene28778.t1 |
| chr7.4 | CDS | 6241643 | 6241765 | 6241643 | ID=cds.MS.gene28778.t1;Parent=MS.gene28778.t1 |
| chr7.4 | exon | 6240606 | 6240919 | 6240606 | ID=MS.gene28778.t1.exon3;Parent=MS.gene28778.t1 |
| chr7.4 | CDS | 6240606 | 6240919 | 6240606 | ID=cds.MS.gene28778.t1;Parent=MS.gene28778.t1 |
| chr7.4 | exon | 6240400 | 6240473 | 6240400 | ID=MS.gene28778.t1.exon4;Parent=MS.gene28778.t1 |
| chr7.4 | CDS | 6240400 | 6240473 | 6240400 | ID=cds.MS.gene28778.t1;Parent=MS.gene28778.t1 |
| chr7.4 | exon | 6240276 | 6240312 | 6240276 | ID=MS.gene28778.t1.exon5;Parent=MS.gene28778.t1 |
| chr7.4 | CDS | 6240276 | 6240312 | 6240276 | ID=cds.MS.gene28778.t1;Parent=MS.gene28778.t1 |
| Gene Sequence |
| Protein sequence |
