Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22507.t1 | XP_013450385.1 | 100 | 219 | 0 | 0 | 1 | 219 | 1 | 219 | 9.20E-104 | 386.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22507.t1 | P49693 | 84.3 | 217 | 23 | 2 | 1 | 215 | 1 | 208 | 7.1e-89 | 328.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22507.t1 | I3SA92 | 100.0 | 219 | 0 | 0 | 1 | 219 | 1 | 219 | 6.6e-104 | 386.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050134 | MS.gene22507 | 0.819245 | 1.28E-52 | -1.69E-46 |
| MS.gene050290 | MS.gene22507 | 0.801783 | 7.65E-49 | -1.69E-46 |
| MS.gene050791 | MS.gene22507 | 0.828186 | 1.03E-54 | -1.69E-46 |
| MS.gene050912 | MS.gene22507 | 0.836686 | 8.09E-57 | -1.69E-46 |
| MS.gene052664 | MS.gene22507 | 0.803746 | 3.01E-49 | -1.69E-46 |
| MS.gene053224 | MS.gene22507 | 0.830369 | 3.05E-55 | -1.69E-46 |
| MS.gene057272 | MS.gene22507 | 0.812832 | 3.48E-51 | -1.69E-46 |
| MS.gene058994 | MS.gene22507 | 0.802837 | 4.64E-49 | -1.69E-46 |
| MS.gene060853 | MS.gene22507 | 0.831622 | 1.50E-55 | -1.69E-46 |
| MS.gene060856 | MS.gene22507 | 0.830666 | 2.58E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene22507 | MS.gene025692 | PPI |
| MS.gene28778 | MS.gene22507 | PPI |
| MS.gene025692 | MS.gene22507 | PPI |
| MS.gene07018 | MS.gene22507 | PPI |
| MS.gene22507 | MS.gene07018 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22507.t1 | MTR_7g108955 | 100.000 | 219 | 0 | 0 | 1 | 219 | 1 | 219 | 3.29e-160 | 441 |
| MS.gene22507.t1 | MTR_7g108955 | 100.000 | 208 | 0 | 0 | 1 | 208 | 1 | 208 | 5.99e-153 | 422 |
| MS.gene22507.t1 | MTR_1g087910 | 98.925 | 186 | 2 | 0 | 1 | 186 | 1 | 186 | 6.10e-123 | 347 |
| MS.gene22507.t1 | MTR_1g087910 | 98.925 | 186 | 2 | 0 | 1 | 186 | 1 | 186 | 8.07e-123 | 347 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22507.t1 | AT3G16780 | 82.791 | 215 | 31 | 3 | 1 | 215 | 1 | 209 | 6.91e-124 | 349 |
| MS.gene22507.t1 | AT1G02780 | 91.489 | 188 | 16 | 0 | 1 | 188 | 1 | 188 | 1.63e-116 | 331 |
| MS.gene22507.t1 | AT4G02230 | 91.489 | 188 | 16 | 0 | 1 | 188 | 1 | 188 | 2.47e-115 | 328 |
| MS.gene22507.t1 | AT4G16030 | 42.953 | 149 | 33 | 7 | 57 | 194 | 6 | 113 | 9.99e-18 | 76.3 |
Find 68 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCACGGCTGGCCTTGTTCT+TGG | 0.184984 | 7.3:+5831449 | None:intergenic |
| TAACCAGCTTCCTTATGTTT+TGG | 0.262188 | 7.3:+5832535 | None:intergenic |
| CTCTCTAGCCTTCTCAGCTT+TGG | 0.269286 | 7.3:+5831506 | None:intergenic |
| CATGTGCTTGTCAATCTTCT+TGG | 0.273354 | 7.3:+5831605 | None:intergenic |
| GAGATTTCGTTAACTTCATT+TGG | 0.301140 | 7.3:+5832667 | None:intergenic |
| GGCCTTGTTCTTGGCACGTT+TGG | 0.315875 | 7.3:+5831458 | None:intergenic |
| ATTATAATACTCACTGGGTC+TGG | 0.332335 | 7.3:+5831193 | None:intergenic |
| TGTGGGAAGCCTTGCCTCTC+TGG | 0.339458 | 7.3:+5831689 | None:intergenic |
| TTGTAAAATGTTTAGGGTCC+TGG | 0.366808 | 7.3:-5831273 | MS.gene22507:intron |
| AAAGGAAGACACTCTGGATA+TGG | 0.389292 | 7.3:-5832435 | MS.gene22507:intron |
| AGTGCGGTCGTGGCAAAGTT+TGG | 0.396257 | 7.3:-5832696 | MS.gene22507:CDS |
| GTTGGCTTTGTTGCAGCAAC+AGG | 0.405850 | 7.3:+5831216 | None:intergenic |
| TGACATGTACATGAAGGTTA+AGG | 0.407532 | 7.3:-5831577 | MS.gene22507:CDS |
| TTTGAATGTGCATAGGTAAG+AGG | 0.427942 | 7.3:-5831719 | MS.gene22507:intron |
| AAACATAAGGAAGCTGGTTA+AGG | 0.436979 | 7.3:-5832532 | MS.gene22507:CDS |
| TGTCAATCTTCTTGGCCTCC+CGG | 0.437210 | 7.3:+5831613 | None:intergenic |
| GACGTTTGCTCCGCAAGTAC+CGG | 0.438844 | 7.3:-5831632 | MS.gene22507:CDS |
| TCTGCTGGCTTCTCTCCTCC+AGG | 0.456457 | 7.3:+5831255 | None:intergenic |
| TGGCACGTTTGGCCTCAAAC+TGG | 0.457561 | 7.3:+5831469 | None:intergenic |
| AGCGTTCTCAAGTGCGGTCG+TGG | 0.462752 | 7.3:-5832706 | MS.gene22507:CDS |
| TTAAGGATGGGTTTATCATC+AGG | 0.469316 | 7.3:-5832515 | MS.gene22507:CDS |
| TAAGAATAAGAGAGTTCTGA+TGG | 0.474240 | 7.3:-5831544 | MS.gene22507:CDS |
| ACGAGACCTGGAGTGAATCT+TGG | 0.477136 | 7.3:+5832485 | None:intergenic |
| AGCATGCTTCCTCTCACGGC+TGG | 0.480022 | 7.3:+5831437 | None:intergenic |
| TTATAATACTCACTGGGTCT+GGG | 0.483209 | 7.3:+5831194 | None:intergenic |
| GACATGTACATGAAGGTTAA+GGG | 0.489265 | 7.3:-5831576 | MS.gene22507:CDS |
| TCCTAGCATGCTTCCTCTCA+CGG | 0.495294 | 7.3:+5831433 | None:intergenic |
| AATACTCACTGGGTCTGGGT+TGG | 0.502471 | 7.3:+5831198 | None:intergenic |
| GACCTTGTCAGACCAGTTTG+AGG | 0.515108 | 7.3:-5831481 | MS.gene22507:CDS |
| AAGAGGAAAGGAAGACACTC+TGG | 0.516416 | 7.3:-5832441 | MS.gene22507:CDS |
| TCTTGGCCTCCCGGTACTTG+CGG | 0.524961 | 7.3:+5831622 | None:intergenic |
| GCAGCACTAGGAGCTTCTGC+TGG | 0.526670 | 7.3:+5831240 | None:intergenic |
| ACGTTTGCTCCGCAAGTACC+GGG | 0.538079 | 7.3:-5831631 | MS.gene22507:CDS |
| CATTCTACGAGCACGAGACC+TGG | 0.539613 | 7.3:+5832473 | None:intergenic |
| ATAAGGAAGCTGGTTAAGGA+TGG | 0.542795 | 7.3:-5832528 | MS.gene22507:CDS |
| CACGCATTCTTCTCATCCAA+AGG | 0.547413 | 7.3:+5831661 | None:intergenic |
| GCCGTGAGAGGAAGCATGCT+AGG | 0.550143 | 7.3:-5831434 | MS.gene22507:CDS |
| TCACAAGTCCAAAGCTGAGA+AGG | 0.552682 | 7.3:-5831514 | MS.gene22507:CDS |
| GTCTCGTGCTCGTAGAATGA+AGG | 0.553438 | 7.3:-5832469 | MS.gene22507:CDS |
| ATGAAGGAAGCTAAGAGGAA+AGG | 0.554411 | 7.3:-5832453 | MS.gene22507:CDS |
| AATGTGCATAGGTAAGAGGA+AGG | 0.560538 | 7.3:-5831715 | MS.gene22507:intron |
| TAAGGAAGCTGGTTAAGGAT+GGG | 0.561785 | 7.3:-5832527 | MS.gene22507:CDS |
| GTAGAATGAAGGAAGCTAAG+AGG | 0.564014 | 7.3:-5832458 | MS.gene22507:CDS |
| GCAGCAACAGGTGCAGCACT+AGG | 0.565218 | 7.3:+5831228 | None:intergenic |
| ACCGCAAAAGAAATCAAAGA+AGG | 0.568261 | 7.3:-5831097 | MS.gene22507:CDS |
| TGAGAGGAAGCATGCTAGGA+GGG | 0.573502 | 7.3:-5831430 | MS.gene22507:CDS |
| AGAACAAGGCCAGCCGTGAG+AGG | 0.576244 | 7.3:-5831446 | MS.gene22507:CDS |
| AGGCCAAAACATAAGGAAGC+TGG | 0.578002 | 7.3:-5832538 | MS.gene22507:CDS |
| ACTTGAGAACGCTGGAAGCG+AGG | 0.578193 | 7.3:+5832716 | None:intergenic |
| GGCCTCAAACTGGTCTGACA+AGG | 0.581380 | 7.3:+5831479 | None:intergenic |
| TTGCAATTTGAGGGAGACCA+TGG | 0.583099 | 7.3:+5832744 | None:intergenic |
| GGCCAAACGTGCCAAGAACA+AGG | 0.590924 | 7.3:-5831460 | MS.gene22507:CDS |
| TAACCTTCATGTACATGTCA+TGG | 0.601477 | 7.3:+5831580 | None:intergenic |
| AACCTACCAAGATTCACTCC+AGG | 0.604963 | 7.3:-5832491 | MS.gene22507:CDS |
| TGAAGTTAACGAAATCTCCA+TGG | 0.615795 | 7.3:-5832662 | MS.gene22507:CDS |
| ACGACCGCACTTGAGAACGC+TGG | 0.620586 | 7.3:+5832708 | None:intergenic |
| GTGAGAGGAAGCATGCTAGG+AGG | 0.624464 | 7.3:-5831431 | MS.gene22507:CDS |
| GCTTCCAGCGTTCTCAAGTG+CGG | 0.631493 | 7.3:-5832712 | MS.gene22507:CDS |
| TAAAATGTTTAGGGTCCTGG+AGG | 0.638656 | 7.3:-5831270 | MS.gene22507:intron |
| CAAGCAATCTCAGACTGCAG+CGG | 0.641887 | 7.3:+5831074 | None:intergenic |
| TAGCTTACGAGAATTAGCCA+TGG | 0.650085 | 7.3:+5832645 | None:intergenic |
| GTACCATGACATGTACATGA+AGG | 0.655137 | 7.3:-5831583 | MS.gene22507:CDS |
| GACCTGGAGTGAATCTTGGT+AGG | 0.656690 | 7.3:+5832489 | None:intergenic |
| GAGGAAGCATGCTAGGAGGG+AGG | 0.658603 | 7.3:-5831427 | MS.gene22507:CDS |
| GGAAGGGTACCAGAGAGGCA+AGG | 0.658732 | 7.3:-5831698 | MS.gene22507:CDS |
| TAAGAGGAAGGGTACCAGAG+AGG | 0.678708 | 7.3:-5831703 | MS.gene22507:CDS |
| ATGTGCATAGGTAAGAGGAA+GGG | 0.705490 | 7.3:-5831714 | MS.gene22507:intron |
| TTTGCTCCGCAAGTACCGGG+AGG | 0.725507 | 7.3:-5831628 | MS.gene22507:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTATAAACAAACAAAA+TGG | + | chr7.3:5831557-5831576 | None:intergenic | 10.0% |
| !!! | ATTCTTTTTGAAATTATTAA+TGG | - | chr7.3:5832513-5832532 | MS.gene22507:CDS | 10.0% |
| !! | AATAAATTATAATACTCACT+GGG | + | chr7.3:5832640-5832659 | None:intergenic | 15.0% |
| !! | ATCTATTCTTATTATGATTT+AGG | - | chr7.3:5831454-5831473 | MS.gene22507:CDS | 15.0% |
| !! | TAATAATTGTTTGAAAACTA+TGG | - | chr7.3:5831886-5831905 | MS.gene22507:intron | 15.0% |
| !!! | TTTTCTTTGTAAAATGTTTA+GGG | - | chr7.3:5832546-5832565 | MS.gene22507:intron | 15.0% |
| !! | AAAGAATTTCAAGAAATCAT+AGG | + | chr7.3:5832447-5832466 | None:intergenic | 20.0% |
| !! | ATGTATTTCAGTTTACAAAA+TGG | - | chr7.3:5831851-5831870 | MS.gene22507:intron | 20.0% |
| !! | GAATAAATTATAATACTCAC+TGG | + | chr7.3:5832641-5832660 | None:intergenic | 20.0% |
| !!! | AAAGTTGATTTTGATTTTGT+AGG | - | chr7.3:5831267-5831286 | MS.gene22507:intron | 20.0% |
| !!! | CTAAACATTTTACAAAGAAA+AGG | + | chr7.3:5832547-5832566 | None:intergenic | 20.0% |
| !!! | CTTTTCTTTGTAAAATGTTT+AGG | - | chr7.3:5832545-5832564 | MS.gene22507:intron | 20.0% |
| !!! | TCATATTTTACAAAACAACA+TGG | + | chr7.3:5831997-5832016 | None:intergenic | 20.0% |
| ! | ACATAGATGTATATGATTTG+AGG | - | chr7.3:5832471-5832490 | MS.gene22507:CDS | 25.0% |
| ! | GAAATACGAGTTTACATTTA+TGG | - | chr7.3:5832017-5832036 | MS.gene22507:intron | 25.0% |
| ! | TTAGGTTATACACTCAAAAT+AGG | - | chr7.3:5831472-5831491 | MS.gene22507:CDS | 25.0% |
| !! | ATTTAAAATGAAGCTAATCG+AGG | + | chr7.3:5831436-5831455 | None:intergenic | 25.0% |
| AAAAACTGTCAACAATTCCA+TGG | + | chr7.3:5831912-5831931 | None:intergenic | 30.0% | |
| GAGATTTCGTTAACTTCATT+TGG | + | chr7.3:5831161-5831180 | None:intergenic | 30.0% | |
| TTAAACAATCATGCATAGCA+GGG | + | chr7.3:5832689-5832708 | None:intergenic | 30.0% | |
| TTTAAACAATCATGCATAGC+AGG | + | chr7.3:5832690-5832709 | None:intergenic | 30.0% | |
| ! | AACTAATCAATCTAAGACAG+TGG | + | chr7.3:5831763-5831782 | None:intergenic | 30.0% |
| ! | ATTTTGTAGGCCAAAACATA+AGG | - | chr7.3:5831280-5831299 | MS.gene22507:intron | 30.0% |
| ! | TAAGAATAAGAGAGTTCTGA+TGG | - | chr7.3:5832281-5832300 | MS.gene22507:intron | 30.0% |
| ! | TGAGTGAAAAGCTAACATTT+TGG | + | chr7.3:5831820-5831839 | None:intergenic | 30.0% |
| AAACATAAGGAAGCTGGTTA+AGG | - | chr7.3:5831293-5831312 | MS.gene22507:intron | 35.0% | |
| AAATGAAGCTAATCGAGGTT+AGG | + | chr7.3:5831431-5831450 | None:intergenic | 35.0% | |
| AATGAAGCTAATCGAGGTTA+GGG | + | chr7.3:5831430-5831449 | None:intergenic | 35.0% | |
| ACCGCAAAAGAAATCAAAGA+AGG | - | chr7.3:5832728-5832747 | MS.gene22507:CDS | 35.0% | |
| ACGAGTTTACATTTATGGAC+TGG | - | chr7.3:5832022-5832041 | MS.gene22507:intron | 35.0% | |
| ATTATAATACTCACTGGGTC+TGG | + | chr7.3:5832635-5832654 | None:intergenic | 35.0% | |
| GACATGTACATGAAGGTTAA+GGG | - | chr7.3:5832249-5832268 | MS.gene22507:intron | 35.0% | |
| GTGTTTGTTTGAATGTGCAT+AGG | - | chr7.3:5832099-5832118 | MS.gene22507:intron | 35.0% | |
| TAACCTTCATGTACATGTCA+TGG | + | chr7.3:5832248-5832267 | None:intergenic | 35.0% | |
| TGAAGTTAACGAAATCTCCA+TGG | - | chr7.3:5831163-5831182 | MS.gene22507:intron | 35.0% | |
| TGACATGTACATGAAGGTTA+AGG | - | chr7.3:5832248-5832267 | MS.gene22507:intron | 35.0% | |
| TTACTGAGTTGCTCATCAAT+TGG | - | chr7.3:5831963-5831982 | MS.gene22507:intron | 35.0% | |
| TTATAATACTCACTGGGTCT+GGG | + | chr7.3:5832634-5832653 | None:intergenic | 35.0% | |
| TTGTTTGAAAACTATGGCCA+TGG | - | chr7.3:5831892-5831911 | MS.gene22507:intron | 35.0% | |
| TTTGAATGTGCATAGGTAAG+AGG | - | chr7.3:5832106-5832125 | MS.gene22507:intron | 35.0% | |
| ! | CTCATCCAAAGGATTTTTGT+GGG | + | chr7.3:5832156-5832175 | None:intergenic | 35.0% |
| ! | TAACCAGCTTCCTTATGTTT+TGG | + | chr7.3:5831293-5831312 | None:intergenic | 35.0% |
| ! | TCTCATCCAAAGGATTTTTG+TGG | + | chr7.3:5832157-5832176 | None:intergenic | 35.0% |
| ! | TTAAGGATGGGTTTATCATC+AGG | - | chr7.3:5831310-5831329 | MS.gene22507:intron | 35.0% |
| ! | TTGTAAAATGTTTAGGGTCC+TGG | - | chr7.3:5832552-5832571 | MS.gene22507:intron | 35.0% |
| !! | GCCTTCTTTGATTTCTTTTG+CGG | + | chr7.3:5832732-5832751 | None:intergenic | 35.0% |
| !! | GCTAACATTTTGGTGTGAAA+AGG | + | chr7.3:5831810-5831829 | None:intergenic | 35.0% |
| AAAGGAAGACACTCTGGATA+TGG | - | chr7.3:5831390-5831409 | MS.gene22507:intron | 40.0% | |
| AATGTGCATAGGTAAGAGGA+AGG | - | chr7.3:5832110-5832129 | MS.gene22507:intron | 40.0% | |
| ATAAGGAAGCTGGTTAAGGA+TGG | - | chr7.3:5831297-5831316 | MS.gene22507:intron | 40.0% | |
| ATATCTCTAGATGACCAGAC+AGG | + | chr7.3:5832061-5832080 | None:intergenic | 40.0% | |
| ATGAAGCTAATCGAGGTTAG+GGG | + | chr7.3:5831429-5831448 | None:intergenic | 40.0% | |
| ATGAAGGAAGCTAAGAGGAA+AGG | - | chr7.3:5831372-5831391 | MS.gene22507:intron | 40.0% | |
| ATGTGCATAGGTAAGAGGAA+GGG | - | chr7.3:5832111-5832130 | MS.gene22507:intron | 40.0% | |
| CATGTGCTTGTCAATCTTCT+TGG | + | chr7.3:5832223-5832242 | None:intergenic | 40.0% | |
| GTACCATGACATGTACATGA+AGG | - | chr7.3:5832242-5832261 | MS.gene22507:intron | 40.0% | |
| GTAGAATGAAGGAAGCTAAG+AGG | - | chr7.3:5831367-5831386 | MS.gene22507:intron | 40.0% | |
| TAAGGAAGCTGGTTAAGGAT+GGG | - | chr7.3:5831298-5831317 | MS.gene22507:intron | 40.0% | |
| TAGCTTACGAGAATTAGCCA+TGG | + | chr7.3:5831183-5831202 | None:intergenic | 40.0% | |
| ! | TAAAATGTTTAGGGTCCTGG+AGG | - | chr7.3:5832555-5832574 | MS.gene22507:intron | 40.0% |
| AACAATCATGCATAGCAGGG+CGG | + | chr7.3:5832686-5832705 | None:intergenic | 45.0% | |
| AACCTACCAAGATTCACTCC+AGG | - | chr7.3:5831334-5831353 | MS.gene22507:intron | 45.0% | |
| AAGAGGAAAGGAAGACACTC+TGG | - | chr7.3:5831384-5831403 | MS.gene22507:intron | 45.0% | |
| AGGCCAAAACATAAGGAAGC+TGG | - | chr7.3:5831287-5831306 | MS.gene22507:intron | 45.0% | |
| CACGCATTCTTCTCATCCAA+AGG | + | chr7.3:5832167-5832186 | None:intergenic | 45.0% | |
| GAAGACACTCTGGATATGGT+TGG | - | chr7.3:5831394-5831413 | MS.gene22507:intron | 45.0% | |
| GGCTTCCCACAAAAATCCTT+TGG | - | chr7.3:5832148-5832167 | MS.gene22507:intron | 45.0% | |
| TCACAAGTCCAAAGCTGAGA+AGG | - | chr7.3:5832311-5832330 | MS.gene22507:intron | 45.0% | |
| !! | GAGGCGCTTTTGCAATTTGA+GGG | + | chr7.3:5831093-5831112 | None:intergenic | 45.0% |
| !!! | AATAAATTTTATTTTAAGAT+CGG | + | chr7.3:5831593-5831612 | None:intergenic | 5.0% |
| AATACTCACTGGGTCTGGGT+TGG | + | chr7.3:5832630-5832649 | None:intergenic | 50.0% | |
| ACGAGACCTGGAGTGAATCT+TGG | + | chr7.3:5831343-5831362 | None:intergenic | 50.0% | |
| GACCTGGAGTGAATCTTGGT+AGG | + | chr7.3:5831339-5831358 | None:intergenic | 50.0% | |
| GACCTTGTCAGACCAGTTTG+AGG | - | chr7.3:5832344-5832363 | MS.gene22507:intron | 50.0% | |
| GCTCAAAGCATGTTCCTGTC+TGG | - | chr7.3:5832044-5832063 | MS.gene22507:intron | 50.0% | |
| GTCTCGTGCTCGTAGAATGA+AGG | - | chr7.3:5831356-5831375 | MS.gene22507:intron | 50.0% | |
| TCCTAGCATGCTTCCTCTCA+CGG | + | chr7.3:5832395-5832414 | None:intergenic | 50.0% | |
| TGTCAATCTTCTTGGCCTCC+CGG | + | chr7.3:5832215-5832234 | None:intergenic | 50.0% | |
| ! | CTCTCTAGCCTTCTCAGCTT+TGG | + | chr7.3:5832322-5832341 | None:intergenic | 50.0% |
| ! | TGAGAGGAAGCATGCTAGGA+GGG | - | chr7.3:5832395-5832414 | MS.gene22507:intron | 50.0% |
| !! | CGAGGCGCTTTTGCAATTTG+AGG | + | chr7.3:5831094-5831113 | None:intergenic | 50.0% |
| !! | GTTGGCTTTGTTGCAGCAAC+AGG | + | chr7.3:5832612-5832631 | None:intergenic | 50.0% |
| !! | TAAGAGGAAGGGTACCAGAG+AGG | - | chr7.3:5832122-5832141 | MS.gene22507:intron | 50.0% |
| ACGTTTGCTCCGCAAGTACC+GGG | - | chr7.3:5832194-5832213 | MS.gene22507:intron | 55.0% | |
| ACTTGAGAACGCTGGAAGCG+AGG | + | chr7.3:5831112-5831131 | None:intergenic | 55.0% | |
| AGTGCGGTCGTGGCAAAGTT+TGG | - | chr7.3:5831129-5831148 | MS.gene22507:intron | 55.0% | |
| ATCATGCATAGCAGGGCGGA+AGG | + | chr7.3:5832682-5832701 | None:intergenic | 55.0% | |
| CATTCTACGAGCACGAGACC+TGG | + | chr7.3:5831355-5831374 | None:intergenic | 55.0% | |
| GACGTTTGCTCCGCAAGTAC+CGG | - | chr7.3:5832193-5832212 | MS.gene22507:intron | 55.0% | |
| GCTTCCAGCGTTCTCAAGTG+CGG | - | chr7.3:5831113-5831132 | MS.gene22507:intron | 55.0% | |
| GGCCAAACGTGCCAAGAACA+AGG | - | chr7.3:5832365-5832384 | MS.gene22507:intron | 55.0% | |
| TGGCACGTTTGGCCTCAAAC+TGG | + | chr7.3:5832359-5832378 | None:intergenic | 55.0% | |
| ! | GGCCTCAAACTGGTCTGACA+AGG | + | chr7.3:5832349-5832368 | None:intergenic | 55.0% |
| ! | GTGAGAGGAAGCATGCTAGG+AGG | - | chr7.3:5832394-5832413 | MS.gene22507:intron | 55.0% |
| !! | GGCCTTGTTCTTGGCACGTT+TGG | + | chr7.3:5832370-5832389 | None:intergenic | 55.0% |
| ACGACCGCACTTGAGAACGC+TGG | + | chr7.3:5831120-5831139 | None:intergenic | 60.0% | |
| AGAACAAGGCCAGCCGTGAG+AGG | - | chr7.3:5832379-5832398 | MS.gene22507:intron | 60.0% | |
| AGCATGCTTCCTCTCACGGC+TGG | + | chr7.3:5832391-5832410 | None:intergenic | 60.0% | |
| AGCGTTCTCAAGTGCGGTCG+TGG | - | chr7.3:5831119-5831138 | MS.gene22507:intron | 60.0% | |
| GCAGCAACAGGTGCAGCACT+AGG | + | chr7.3:5832600-5832619 | None:intergenic | 60.0% | |
| GCAGCACTAGGAGCTTCTGC+TGG | + | chr7.3:5832588-5832607 | None:intergenic | 60.0% | |
| TCTTGGCCTCCCGGTACTTG+CGG | + | chr7.3:5832206-5832225 | None:intergenic | 60.0% | |
| TGTGGGAAGCCTTGCCTCTC+TGG | + | chr7.3:5832139-5832158 | None:intergenic | 60.0% | |
| ! | GAGGAAGCATGCTAGGAGGG+AGG | - | chr7.3:5832398-5832417 | MS.gene22507:intron | 60.0% |
| ! | GCCGTGAGAGGAAGCATGCT+AGG | - | chr7.3:5832391-5832410 | MS.gene22507:intron | 60.0% |
| !! | CTCACGGCTGGCCTTGTTCT+TGG | + | chr7.3:5832379-5832398 | None:intergenic | 60.0% |
| !! | GGAAGGGTACCAGAGAGGCA+AGG | - | chr7.3:5832127-5832146 | MS.gene22507:intron | 60.0% |
| !! | TCTGCTGGCTTCTCTCCTCC+AGG | + | chr7.3:5832573-5832592 | None:intergenic | 60.0% |
| !! | TTTGCTCCGCAAGTACCGGG+AGG | - | chr7.3:5832197-5832216 | MS.gene22507:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 5831083 | 5832764 | 5831083 | ID=MS.gene22507 |
| chr7.3 | mRNA | 5831083 | 5832764 | 5831083 | ID=MS.gene22507.t1;Parent=MS.gene22507 |
| chr7.3 | exon | 5832653 | 5832764 | 5832653 | ID=MS.gene22507.t1.exon1;Parent=MS.gene22507.t1 |
| chr7.3 | CDS | 5832653 | 5832764 | 5832653 | ID=cds.MS.gene22507.t1;Parent=MS.gene22507.t1 |
| chr7.3 | exon | 5832436 | 5832558 | 5832436 | ID=MS.gene22507.t1.exon2;Parent=MS.gene22507.t1 |
| chr7.3 | CDS | 5832436 | 5832558 | 5832436 | ID=cds.MS.gene22507.t1;Parent=MS.gene22507.t1 |
| chr7.3 | exon | 5831413 | 5831726 | 5831413 | ID=MS.gene22507.t1.exon3;Parent=MS.gene22507.t1 |
| chr7.3 | CDS | 5831413 | 5831726 | 5831413 | ID=cds.MS.gene22507.t1;Parent=MS.gene22507.t1 |
| chr7.3 | exon | 5831207 | 5831280 | 5831207 | ID=MS.gene22507.t1.exon4;Parent=MS.gene22507.t1 |
| chr7.3 | CDS | 5831207 | 5831280 | 5831207 | ID=cds.MS.gene22507.t1;Parent=MS.gene22507.t1 |
| chr7.3 | exon | 5831083 | 5831119 | 5831083 | ID=MS.gene22507.t1.exon5;Parent=MS.gene22507.t1 |
| chr7.3 | CDS | 5831083 | 5831119 | 5831083 | ID=cds.MS.gene22507.t1;Parent=MS.gene22507.t1 |
| Gene Sequence |
| Protein sequence |
