Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07018.t1 | XP_013450385.1 | 100 | 219 | 0 | 0 | 1 | 219 | 1 | 219 | 9.20E-104 | 386.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07018.t1 | P49693 | 84.3 | 217 | 23 | 2 | 1 | 215 | 1 | 208 | 7.1e-89 | 328.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07018.t1 | I3SA92 | 100.0 | 219 | 0 | 0 | 1 | 219 | 1 | 219 | 6.6e-104 | 386.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050134 | MS.gene07018 | 0.833307 | 5.75E-56 | -1.69E-46 |
| MS.gene050252 | MS.gene07018 | 0.814748 | 1.32E-51 | -1.69E-46 |
| MS.gene050290 | MS.gene07018 | 0.815279 | 1.00E-51 | -1.69E-46 |
| MS.gene050791 | MS.gene07018 | 0.836388 | 9.64E-57 | -1.69E-46 |
| MS.gene050912 | MS.gene07018 | 0.829872 | 4.04E-55 | -1.69E-46 |
| MS.gene051904 | MS.gene07018 | 0.811034 | 8.57E-51 | -1.69E-46 |
| MS.gene052664 | MS.gene07018 | 0.809636 | 1.72E-50 | -1.69E-46 |
| MS.gene053224 | MS.gene07018 | 0.843618 | 1.25E-58 | -1.69E-46 |
| MS.gene056917 | MS.gene07018 | 0.810123 | 1.35E-50 | -1.69E-46 |
| MS.gene057092 | MS.gene07018 | 0.814738 | 1.32E-51 | -1.69E-46 |
| MS.gene057272 | MS.gene07018 | 0.828025 | 1.13E-54 | -1.69E-46 |
| MS.gene057643 | MS.gene07018 | 0.801658 | 8.12E-49 | -1.69E-46 |
| MS.gene058994 | MS.gene07018 | 0.811377 | 7.22E-51 | -1.69E-46 |
| MS.gene060853 | MS.gene07018 | 0.83334 | 5.64E-56 | -1.69E-46 |
| MS.gene060856 | MS.gene07018 | 0.843004 | 1.83E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene025692 | MS.gene07018 | PPI |
| MS.gene28778 | MS.gene07018 | PPI |
| MS.gene07018 | MS.gene22507 | PPI |
| MS.gene22507 | MS.gene07018 | PPI |
| MS.gene07018 | MS.gene025692 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07018.t1 | MTR_7g108955 | 100.000 | 219 | 0 | 0 | 1 | 219 | 1 | 219 | 3.29e-160 | 441 |
| MS.gene07018.t1 | MTR_7g108955 | 100.000 | 208 | 0 | 0 | 1 | 208 | 1 | 208 | 5.99e-153 | 422 |
| MS.gene07018.t1 | MTR_1g087910 | 98.925 | 186 | 2 | 0 | 1 | 186 | 1 | 186 | 6.10e-123 | 347 |
| MS.gene07018.t1 | MTR_1g087910 | 98.925 | 186 | 2 | 0 | 1 | 186 | 1 | 186 | 8.07e-123 | 347 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07018.t1 | AT3G16780 | 82.791 | 215 | 31 | 3 | 1 | 215 | 1 | 209 | 6.91e-124 | 349 |
| MS.gene07018.t1 | AT1G02780 | 91.489 | 188 | 16 | 0 | 1 | 188 | 1 | 188 | 1.63e-116 | 331 |
| MS.gene07018.t1 | AT4G02230 | 91.489 | 188 | 16 | 0 | 1 | 188 | 1 | 188 | 2.47e-115 | 328 |
| MS.gene07018.t1 | AT4G16030 | 42.953 | 149 | 33 | 7 | 57 | 194 | 6 | 113 | 9.99e-18 | 76.3 |
Find 68 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCACGGCTGGCCTTGTTCT+TGG | 0.184984 | 7.3:+5853846 | None:intergenic |
| TAACCAGCTTCCTTATGTTT+TGG | 0.262188 | 7.3:+5854932 | None:intergenic |
| CTCTCTAGCCTTCTCAGCTT+TGG | 0.269286 | 7.3:+5853903 | None:intergenic |
| CATGTGCTTGTCAATCTTCT+TGG | 0.273354 | 7.3:+5854002 | None:intergenic |
| GAGATTTCGTTAACTTCATT+TGG | 0.301140 | 7.3:+5855064 | None:intergenic |
| GGCCTTGTTCTTGGCACGTT+TGG | 0.315875 | 7.3:+5853855 | None:intergenic |
| ATTATAATACTCACTGGGTC+TGG | 0.332335 | 7.3:+5853590 | None:intergenic |
| TGTGGGAAGCCTTGCCTCTC+TGG | 0.339458 | 7.3:+5854086 | None:intergenic |
| TTGTAAAATGTTTAGGGTCC+TGG | 0.366808 | 7.3:-5853670 | MS.gene07018:intron |
| AAAGGAAGACACTCTGGATA+TGG | 0.389292 | 7.3:-5854832 | MS.gene07018:intron |
| AGTGCGGTCGTGGCAAAGTT+TGG | 0.396257 | 7.3:-5855093 | MS.gene07018:CDS |
| GTTGGCTTTGTTGCAGCAAC+AGG | 0.405850 | 7.3:+5853613 | None:intergenic |
| TGACATGTACATGAAGGTTA+AGG | 0.407532 | 7.3:-5853974 | MS.gene07018:CDS |
| TTTGAATGTGCATAGGTAAG+AGG | 0.427942 | 7.3:-5854116 | MS.gene07018:intron |
| AAACATAAGGAAGCTGGTTA+AGG | 0.436979 | 7.3:-5854929 | MS.gene07018:CDS |
| TGTCAATCTTCTTGGCCTCC+CGG | 0.437210 | 7.3:+5854010 | None:intergenic |
| GACGTTTGCTCCGCAAGTAC+CGG | 0.438844 | 7.3:-5854029 | MS.gene07018:CDS |
| TCTGCTGGCTTCTCTCCTCC+AGG | 0.456457 | 7.3:+5853652 | None:intergenic |
| TGGCACGTTTGGCCTCAAAC+TGG | 0.457561 | 7.3:+5853866 | None:intergenic |
| AGCGTTCTCAAGTGCGGTCG+TGG | 0.462752 | 7.3:-5855103 | MS.gene07018:CDS |
| TTAAGGATGGGTTTATCATC+AGG | 0.469316 | 7.3:-5854912 | MS.gene07018:CDS |
| TAAGAATAAGAGAGTTCTGA+TGG | 0.474240 | 7.3:-5853941 | MS.gene07018:CDS |
| ACGAGACCTGGAGTGAATCT+TGG | 0.477136 | 7.3:+5854882 | None:intergenic |
| AGCATGCTTCCTCTCACGGC+TGG | 0.480022 | 7.3:+5853834 | None:intergenic |
| TTATAATACTCACTGGGTCT+GGG | 0.483209 | 7.3:+5853591 | None:intergenic |
| GACATGTACATGAAGGTTAA+GGG | 0.489265 | 7.3:-5853973 | MS.gene07018:CDS |
| TCCTAGCATGCTTCCTCTCA+CGG | 0.495294 | 7.3:+5853830 | None:intergenic |
| AATACTCACTGGGTCTGGGT+TGG | 0.502471 | 7.3:+5853595 | None:intergenic |
| GACCTTGTCAGACCAGTTTG+AGG | 0.515108 | 7.3:-5853878 | MS.gene07018:CDS |
| AAGAGGAAAGGAAGACACTC+TGG | 0.516416 | 7.3:-5854838 | MS.gene07018:CDS |
| TCTTGGCCTCCCGGTACTTG+CGG | 0.524961 | 7.3:+5854019 | None:intergenic |
| GCAGCACTAGGAGCTTCTGC+TGG | 0.526670 | 7.3:+5853637 | None:intergenic |
| ACGTTTGCTCCGCAAGTACC+GGG | 0.538079 | 7.3:-5854028 | MS.gene07018:CDS |
| CATTCTACGAGCACGAGACC+TGG | 0.539613 | 7.3:+5854870 | None:intergenic |
| ATAAGGAAGCTGGTTAAGGA+TGG | 0.542795 | 7.3:-5854925 | MS.gene07018:CDS |
| CACGCATTCTTCTCATCCAA+AGG | 0.547413 | 7.3:+5854058 | None:intergenic |
| GCCGTGAGAGGAAGCATGCT+AGG | 0.550143 | 7.3:-5853831 | MS.gene07018:CDS |
| TCACAAGTCCAAAGCTGAGA+AGG | 0.552682 | 7.3:-5853911 | MS.gene07018:CDS |
| GTCTCGTGCTCGTAGAATGA+AGG | 0.553438 | 7.3:-5854866 | MS.gene07018:CDS |
| ATGAAGGAAGCTAAGAGGAA+AGG | 0.554411 | 7.3:-5854850 | MS.gene07018:CDS |
| AATGTGCATAGGTAAGAGGA+AGG | 0.560538 | 7.3:-5854112 | MS.gene07018:intron |
| TAAGGAAGCTGGTTAAGGAT+GGG | 0.561785 | 7.3:-5854924 | MS.gene07018:CDS |
| GTAGAATGAAGGAAGCTAAG+AGG | 0.564014 | 7.3:-5854855 | MS.gene07018:CDS |
| GCAGCAACAGGTGCAGCACT+AGG | 0.565218 | 7.3:+5853625 | None:intergenic |
| ACCGCAAAAGAAATCAAAGA+AGG | 0.568261 | 7.3:-5853494 | MS.gene07018:CDS |
| TGAGAGGAAGCATGCTAGGA+GGG | 0.573502 | 7.3:-5853827 | MS.gene07018:CDS |
| AGAACAAGGCCAGCCGTGAG+AGG | 0.576244 | 7.3:-5853843 | MS.gene07018:CDS |
| AGGCCAAAACATAAGGAAGC+TGG | 0.578002 | 7.3:-5854935 | MS.gene07018:CDS |
| ACTTGAGAACGCTGGAAGCG+AGG | 0.578193 | 7.3:+5855113 | None:intergenic |
| GGCCTCAAACTGGTCTGACA+AGG | 0.581380 | 7.3:+5853876 | None:intergenic |
| TTGCAATTTGAGGGAGACCA+TGG | 0.583099 | 7.3:+5855141 | None:intergenic |
| GGCCAAACGTGCCAAGAACA+AGG | 0.590924 | 7.3:-5853857 | MS.gene07018:CDS |
| TAACCTTCATGTACATGTCA+TGG | 0.601477 | 7.3:+5853977 | None:intergenic |
| AACCTACCAAGATTCACTCC+AGG | 0.604963 | 7.3:-5854888 | MS.gene07018:CDS |
| TGAAGTTAACGAAATCTCCA+TGG | 0.615795 | 7.3:-5855059 | MS.gene07018:CDS |
| ACGACCGCACTTGAGAACGC+TGG | 0.620586 | 7.3:+5855105 | None:intergenic |
| GTGAGAGGAAGCATGCTAGG+AGG | 0.624464 | 7.3:-5853828 | MS.gene07018:CDS |
| GCTTCCAGCGTTCTCAAGTG+CGG | 0.631493 | 7.3:-5855109 | MS.gene07018:CDS |
| TAAAATGTTTAGGGTCCTGG+AGG | 0.638656 | 7.3:-5853667 | MS.gene07018:intron |
| CAAGCAATCTCAGACTGCAG+CGG | 0.641887 | 7.3:+5853471 | None:intergenic |
| TAGCTTACGAGAATTAGCCA+TGG | 0.650085 | 7.3:+5855042 | None:intergenic |
| GTACCATGACATGTACATGA+AGG | 0.655137 | 7.3:-5853980 | MS.gene07018:CDS |
| GACCTGGAGTGAATCTTGGT+AGG | 0.656690 | 7.3:+5854886 | None:intergenic |
| GAGGAAGCATGCTAGGAGGG+AGG | 0.658603 | 7.3:-5853824 | MS.gene07018:CDS |
| GGAAGGGTACCAGAGAGGCA+AGG | 0.658732 | 7.3:-5854095 | MS.gene07018:CDS |
| TAAGAGGAAGGGTACCAGAG+AGG | 0.678708 | 7.3:-5854100 | MS.gene07018:CDS |
| ATGTGCATAGGTAAGAGGAA+GGG | 0.705490 | 7.3:-5854111 | MS.gene07018:intron |
| TTTGCTCCGCAAGTACCGGG+AGG | 0.725507 | 7.3:-5854025 | MS.gene07018:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTATAAACAAACAAAA+TGG | + | chr7.3:5853954-5853973 | None:intergenic | 10.0% |
| !!! | ATTCTTTTTGAAATTATTAA+TGG | - | chr7.3:5854910-5854929 | MS.gene07018:CDS | 10.0% |
| !! | AATAAATTATAATACTCACT+GGG | + | chr7.3:5855037-5855056 | None:intergenic | 15.0% |
| !! | ATCTATTCTTATTATGATTT+AGG | - | chr7.3:5853851-5853870 | MS.gene07018:CDS | 15.0% |
| !! | TAATAATTGTTTGAAAACTA+TGG | - | chr7.3:5854283-5854302 | MS.gene07018:intron | 15.0% |
| !!! | TTTTCTTTGTAAAATGTTTA+GGG | - | chr7.3:5854943-5854962 | MS.gene07018:intron | 15.0% |
| !! | AAAGAATTTCAAGAAATCAT+AGG | + | chr7.3:5854844-5854863 | None:intergenic | 20.0% |
| !! | ATGTATTTCAGTTTACAAAA+TGG | - | chr7.3:5854248-5854267 | MS.gene07018:intron | 20.0% |
| !! | GAATAAATTATAATACTCAC+TGG | + | chr7.3:5855038-5855057 | None:intergenic | 20.0% |
| !!! | AAAGTTGATTTTGATTTTGT+AGG | - | chr7.3:5853664-5853683 | MS.gene07018:intron | 20.0% |
| !!! | CTAAACATTTTACAAAGAAA+AGG | + | chr7.3:5854944-5854963 | None:intergenic | 20.0% |
| !!! | CTTTTCTTTGTAAAATGTTT+AGG | - | chr7.3:5854942-5854961 | MS.gene07018:intron | 20.0% |
| !!! | TCATATTTTACAAAACAACA+TGG | + | chr7.3:5854394-5854413 | None:intergenic | 20.0% |
| ! | ACATAGATGTATATGATTTG+AGG | - | chr7.3:5854868-5854887 | MS.gene07018:CDS | 25.0% |
| ! | GAAATACGAGTTTACATTTA+TGG | - | chr7.3:5854414-5854433 | MS.gene07018:intron | 25.0% |
| ! | TTAGGTTATACACTCAAAAT+AGG | - | chr7.3:5853869-5853888 | MS.gene07018:CDS | 25.0% |
| !! | ATTTAAAATGAAGCTAATCG+AGG | + | chr7.3:5853833-5853852 | None:intergenic | 25.0% |
| AAAAACTGTCAACAATTCCA+TGG | + | chr7.3:5854309-5854328 | None:intergenic | 30.0% | |
| GAGATTTCGTTAACTTCATT+TGG | + | chr7.3:5853558-5853577 | None:intergenic | 30.0% | |
| TTAAACAATCATGCATAGCA+GGG | + | chr7.3:5855086-5855105 | None:intergenic | 30.0% | |
| TTTAAACAATCATGCATAGC+AGG | + | chr7.3:5855087-5855106 | None:intergenic | 30.0% | |
| ! | AACTAATCAATCTAAGACAG+TGG | + | chr7.3:5854160-5854179 | None:intergenic | 30.0% |
| ! | ATTTTGTAGGCCAAAACATA+AGG | - | chr7.3:5853677-5853696 | MS.gene07018:intron | 30.0% |
| ! | TAAGAATAAGAGAGTTCTGA+TGG | - | chr7.3:5854678-5854697 | MS.gene07018:intron | 30.0% |
| ! | TGAGTGAAAAGCTAACATTT+TGG | + | chr7.3:5854217-5854236 | None:intergenic | 30.0% |
| AAACATAAGGAAGCTGGTTA+AGG | - | chr7.3:5853690-5853709 | MS.gene07018:intron | 35.0% | |
| AAATGAAGCTAATCGAGGTT+AGG | + | chr7.3:5853828-5853847 | None:intergenic | 35.0% | |
| AATGAAGCTAATCGAGGTTA+GGG | + | chr7.3:5853827-5853846 | None:intergenic | 35.0% | |
| ACCGCAAAAGAAATCAAAGA+AGG | - | chr7.3:5855125-5855144 | MS.gene07018:CDS | 35.0% | |
| ACGAGTTTACATTTATGGAC+TGG | - | chr7.3:5854419-5854438 | MS.gene07018:intron | 35.0% | |
| ATTATAATACTCACTGGGTC+TGG | + | chr7.3:5855032-5855051 | None:intergenic | 35.0% | |
| GACATGTACATGAAGGTTAA+GGG | - | chr7.3:5854646-5854665 | MS.gene07018:intron | 35.0% | |
| GTGTTTGTTTGAATGTGCAT+AGG | - | chr7.3:5854496-5854515 | MS.gene07018:intron | 35.0% | |
| TAACCTTCATGTACATGTCA+TGG | + | chr7.3:5854645-5854664 | None:intergenic | 35.0% | |
| TGAAGTTAACGAAATCTCCA+TGG | - | chr7.3:5853560-5853579 | MS.gene07018:intron | 35.0% | |
| TGACATGTACATGAAGGTTA+AGG | - | chr7.3:5854645-5854664 | MS.gene07018:intron | 35.0% | |
| TTACTGAGTTGCTCATCAAT+TGG | - | chr7.3:5854360-5854379 | MS.gene07018:intron | 35.0% | |
| TTATAATACTCACTGGGTCT+GGG | + | chr7.3:5855031-5855050 | None:intergenic | 35.0% | |
| TTGTTTGAAAACTATGGCCA+TGG | - | chr7.3:5854289-5854308 | MS.gene07018:intron | 35.0% | |
| TTTGAATGTGCATAGGTAAG+AGG | - | chr7.3:5854503-5854522 | MS.gene07018:intron | 35.0% | |
| ! | CTCATCCAAAGGATTTTTGT+GGG | + | chr7.3:5854553-5854572 | None:intergenic | 35.0% |
| ! | TAACCAGCTTCCTTATGTTT+TGG | + | chr7.3:5853690-5853709 | None:intergenic | 35.0% |
| ! | TCTCATCCAAAGGATTTTTG+TGG | + | chr7.3:5854554-5854573 | None:intergenic | 35.0% |
| ! | TTAAGGATGGGTTTATCATC+AGG | - | chr7.3:5853707-5853726 | MS.gene07018:intron | 35.0% |
| ! | TTGTAAAATGTTTAGGGTCC+TGG | - | chr7.3:5854949-5854968 | MS.gene07018:intron | 35.0% |
| !! | GCCTTCTTTGATTTCTTTTG+CGG | + | chr7.3:5855129-5855148 | None:intergenic | 35.0% |
| !! | GCTAACATTTTGGTGTGAAA+AGG | + | chr7.3:5854207-5854226 | None:intergenic | 35.0% |
| AAAGGAAGACACTCTGGATA+TGG | - | chr7.3:5853787-5853806 | MS.gene07018:intron | 40.0% | |
| AATGTGCATAGGTAAGAGGA+AGG | - | chr7.3:5854507-5854526 | MS.gene07018:intron | 40.0% | |
| ATAAGGAAGCTGGTTAAGGA+TGG | - | chr7.3:5853694-5853713 | MS.gene07018:intron | 40.0% | |
| ATATCTCTAGATGACCAGAC+AGG | + | chr7.3:5854458-5854477 | None:intergenic | 40.0% | |
| ATGAAGCTAATCGAGGTTAG+GGG | + | chr7.3:5853826-5853845 | None:intergenic | 40.0% | |
| ATGAAGGAAGCTAAGAGGAA+AGG | - | chr7.3:5853769-5853788 | MS.gene07018:intron | 40.0% | |
| ATGTGCATAGGTAAGAGGAA+GGG | - | chr7.3:5854508-5854527 | MS.gene07018:intron | 40.0% | |
| CATGTGCTTGTCAATCTTCT+TGG | + | chr7.3:5854620-5854639 | None:intergenic | 40.0% | |
| GTACCATGACATGTACATGA+AGG | - | chr7.3:5854639-5854658 | MS.gene07018:intron | 40.0% | |
| GTAGAATGAAGGAAGCTAAG+AGG | - | chr7.3:5853764-5853783 | MS.gene07018:intron | 40.0% | |
| TAAGGAAGCTGGTTAAGGAT+GGG | - | chr7.3:5853695-5853714 | MS.gene07018:intron | 40.0% | |
| TAGCTTACGAGAATTAGCCA+TGG | + | chr7.3:5853580-5853599 | None:intergenic | 40.0% | |
| ! | TAAAATGTTTAGGGTCCTGG+AGG | - | chr7.3:5854952-5854971 | MS.gene07018:intron | 40.0% |
| AACAATCATGCATAGCAGGG+CGG | + | chr7.3:5855083-5855102 | None:intergenic | 45.0% | |
| AACCTACCAAGATTCACTCC+AGG | - | chr7.3:5853731-5853750 | MS.gene07018:intron | 45.0% | |
| AAGAGGAAAGGAAGACACTC+TGG | - | chr7.3:5853781-5853800 | MS.gene07018:intron | 45.0% | |
| AGGCCAAAACATAAGGAAGC+TGG | - | chr7.3:5853684-5853703 | MS.gene07018:intron | 45.0% | |
| CACGCATTCTTCTCATCCAA+AGG | + | chr7.3:5854564-5854583 | None:intergenic | 45.0% | |
| GAAGACACTCTGGATATGGT+TGG | - | chr7.3:5853791-5853810 | MS.gene07018:intron | 45.0% | |
| GGCTTCCCACAAAAATCCTT+TGG | - | chr7.3:5854545-5854564 | MS.gene07018:intron | 45.0% | |
| TCACAAGTCCAAAGCTGAGA+AGG | - | chr7.3:5854708-5854727 | MS.gene07018:intron | 45.0% | |
| !! | GAGGCGCTTTTGCAATTTGA+GGG | + | chr7.3:5853490-5853509 | None:intergenic | 45.0% |
| !!! | AATAAATTTTATTTTAAGAT+CGG | + | chr7.3:5853990-5854009 | None:intergenic | 5.0% |
| AATACTCACTGGGTCTGGGT+TGG | + | chr7.3:5855027-5855046 | None:intergenic | 50.0% | |
| ACGAGACCTGGAGTGAATCT+TGG | + | chr7.3:5853740-5853759 | None:intergenic | 50.0% | |
| GACCTGGAGTGAATCTTGGT+AGG | + | chr7.3:5853736-5853755 | None:intergenic | 50.0% | |
| GACCTTGTCAGACCAGTTTG+AGG | - | chr7.3:5854741-5854760 | MS.gene07018:intron | 50.0% | |
| GCTCAAAGCATGTTCCTGTC+TGG | - | chr7.3:5854441-5854460 | MS.gene07018:intron | 50.0% | |
| GTCTCGTGCTCGTAGAATGA+AGG | - | chr7.3:5853753-5853772 | MS.gene07018:intron | 50.0% | |
| TCCTAGCATGCTTCCTCTCA+CGG | + | chr7.3:5854792-5854811 | None:intergenic | 50.0% | |
| TGTCAATCTTCTTGGCCTCC+CGG | + | chr7.3:5854612-5854631 | None:intergenic | 50.0% | |
| ! | CTCTCTAGCCTTCTCAGCTT+TGG | + | chr7.3:5854719-5854738 | None:intergenic | 50.0% |
| ! | TGAGAGGAAGCATGCTAGGA+GGG | - | chr7.3:5854792-5854811 | MS.gene07018:intron | 50.0% |
| !! | CGAGGCGCTTTTGCAATTTG+AGG | + | chr7.3:5853491-5853510 | None:intergenic | 50.0% |
| !! | GTTGGCTTTGTTGCAGCAAC+AGG | + | chr7.3:5855009-5855028 | None:intergenic | 50.0% |
| !! | TAAGAGGAAGGGTACCAGAG+AGG | - | chr7.3:5854519-5854538 | MS.gene07018:intron | 50.0% |
| ACGTTTGCTCCGCAAGTACC+GGG | - | chr7.3:5854591-5854610 | MS.gene07018:intron | 55.0% | |
| ACTTGAGAACGCTGGAAGCG+AGG | + | chr7.3:5853509-5853528 | None:intergenic | 55.0% | |
| AGTGCGGTCGTGGCAAAGTT+TGG | - | chr7.3:5853526-5853545 | MS.gene07018:intron | 55.0% | |
| ATCATGCATAGCAGGGCGGA+AGG | + | chr7.3:5855079-5855098 | None:intergenic | 55.0% | |
| CATTCTACGAGCACGAGACC+TGG | + | chr7.3:5853752-5853771 | None:intergenic | 55.0% | |
| GACGTTTGCTCCGCAAGTAC+CGG | - | chr7.3:5854590-5854609 | MS.gene07018:intron | 55.0% | |
| GCTTCCAGCGTTCTCAAGTG+CGG | - | chr7.3:5853510-5853529 | MS.gene07018:intron | 55.0% | |
| GGCCAAACGTGCCAAGAACA+AGG | - | chr7.3:5854762-5854781 | MS.gene07018:intron | 55.0% | |
| TGGCACGTTTGGCCTCAAAC+TGG | + | chr7.3:5854756-5854775 | None:intergenic | 55.0% | |
| ! | GGCCTCAAACTGGTCTGACA+AGG | + | chr7.3:5854746-5854765 | None:intergenic | 55.0% |
| ! | GTGAGAGGAAGCATGCTAGG+AGG | - | chr7.3:5854791-5854810 | MS.gene07018:intron | 55.0% |
| !! | GGCCTTGTTCTTGGCACGTT+TGG | + | chr7.3:5854767-5854786 | None:intergenic | 55.0% |
| ACGACCGCACTTGAGAACGC+TGG | + | chr7.3:5853517-5853536 | None:intergenic | 60.0% | |
| AGAACAAGGCCAGCCGTGAG+AGG | - | chr7.3:5854776-5854795 | MS.gene07018:intron | 60.0% | |
| AGCATGCTTCCTCTCACGGC+TGG | + | chr7.3:5854788-5854807 | None:intergenic | 60.0% | |
| AGCGTTCTCAAGTGCGGTCG+TGG | - | chr7.3:5853516-5853535 | MS.gene07018:intron | 60.0% | |
| GCAGCAACAGGTGCAGCACT+AGG | + | chr7.3:5854997-5855016 | None:intergenic | 60.0% | |
| GCAGCACTAGGAGCTTCTGC+TGG | + | chr7.3:5854985-5855004 | None:intergenic | 60.0% | |
| TCTTGGCCTCCCGGTACTTG+CGG | + | chr7.3:5854603-5854622 | None:intergenic | 60.0% | |
| TGTGGGAAGCCTTGCCTCTC+TGG | + | chr7.3:5854536-5854555 | None:intergenic | 60.0% | |
| ! | GAGGAAGCATGCTAGGAGGG+AGG | - | chr7.3:5854795-5854814 | MS.gene07018:intron | 60.0% |
| ! | GCCGTGAGAGGAAGCATGCT+AGG | - | chr7.3:5854788-5854807 | MS.gene07018:intron | 60.0% |
| !! | CTCACGGCTGGCCTTGTTCT+TGG | + | chr7.3:5854776-5854795 | None:intergenic | 60.0% |
| !! | GGAAGGGTACCAGAGAGGCA+AGG | - | chr7.3:5854524-5854543 | MS.gene07018:intron | 60.0% |
| !! | TCTGCTGGCTTCTCTCCTCC+AGG | + | chr7.3:5854970-5854989 | None:intergenic | 60.0% |
| !! | TTTGCTCCGCAAGTACCGGG+AGG | - | chr7.3:5854594-5854613 | MS.gene07018:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 5853480 | 5855161 | 5853480 | ID=MS.gene07018 |
| chr7.3 | mRNA | 5853480 | 5855161 | 5853480 | ID=MS.gene07018.t1;Parent=MS.gene07018 |
| chr7.3 | exon | 5855050 | 5855161 | 5855050 | ID=MS.gene07018.t1.exon1;Parent=MS.gene07018.t1 |
| chr7.3 | CDS | 5855050 | 5855161 | 5855050 | ID=cds.MS.gene07018.t1;Parent=MS.gene07018.t1 |
| chr7.3 | exon | 5854833 | 5854955 | 5854833 | ID=MS.gene07018.t1.exon2;Parent=MS.gene07018.t1 |
| chr7.3 | CDS | 5854833 | 5854955 | 5854833 | ID=cds.MS.gene07018.t1;Parent=MS.gene07018.t1 |
| chr7.3 | exon | 5853810 | 5854123 | 5853810 | ID=MS.gene07018.t1.exon3;Parent=MS.gene07018.t1 |
| chr7.3 | CDS | 5853810 | 5854123 | 5853810 | ID=cds.MS.gene07018.t1;Parent=MS.gene07018.t1 |
| chr7.3 | exon | 5853604 | 5853677 | 5853604 | ID=MS.gene07018.t1.exon4;Parent=MS.gene07018.t1 |
| chr7.3 | CDS | 5853604 | 5853677 | 5853604 | ID=cds.MS.gene07018.t1;Parent=MS.gene07018.t1 |
| chr7.3 | exon | 5853480 | 5853516 | 5853480 | ID=MS.gene07018.t1.exon5;Parent=MS.gene07018.t1 |
| chr7.3 | CDS | 5853480 | 5853516 | 5853480 | ID=cds.MS.gene07018.t1;Parent=MS.gene07018.t1 |
| Gene Sequence |
| Protein sequence |
