Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28869.t1 | XP_028797820.1 | 83 | 47 | 5 | 2 | 1 | 46 | 240 | 284 | 4.50E-09 | 70.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28869.t1 | A0A2Z6NZL6 | 83.0 | 47 | 5 | 2 | 1 | 46 | 238 | 282 | 3.3e-09 | 70.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049580 | MS.gene28869 | 0.800232 | 1.59E-48 | -1.69E-46 |
| MS.gene052818 | MS.gene28869 | -0.801265 | 9.77E-49 | -1.69E-46 |
| MS.gene053340 | MS.gene28869 | 0.80179 | 7.62E-49 | -1.69E-46 |
| MS.gene058074 | MS.gene28869 | 0.801406 | 9.14E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28869.t1 | MTR_1g111400 | 79.592 | 49 | 7 | 2 | 1 | 48 | 225 | 271 | 4.74e-16 | 72.8 |
| MS.gene28869.t1 | MTR_1g111400 | 79.592 | 49 | 7 | 2 | 1 | 48 | 225 | 271 | 8.32e-16 | 72.0 |
| MS.gene28869.t1 | MTR_8g463650 | 65.306 | 49 | 14 | 2 | 1 | 48 | 207 | 253 | 1.29e-11 | 60.1 |
| MS.gene28869.t1 | MTR_8g463650 | 65.306 | 49 | 14 | 2 | 1 | 48 | 207 | 253 | 1.60e-11 | 60.1 |
| MS.gene28869.t1 | MTR_8g463650 | 65.306 | 49 | 14 | 2 | 1 | 48 | 207 | 253 | 1.85e-11 | 59.7 |
| MS.gene28869.t1 | MTR_8g463650 | 65.306 | 49 | 14 | 2 | 1 | 48 | 207 | 253 | 1.87e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28869.t1 | AT3G10420 | 74.468 | 47 | 9 | 2 | 1 | 46 | 236 | 280 | 1.77e-13 | 65.5 |
| MS.gene28869.t1 | AT3G10420 | 74.468 | 47 | 9 | 2 | 1 | 46 | 236 | 280 | 1.82e-13 | 65.5 |
Find 28 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGATACATCCAATGAAAT+TGG | 0.303806 | 8.2:+29817605 | MS.gene28869:CDS |
| GGTGGAGATGTTCTTCTTGC+AGG | 0.311714 | 8.2:+29817629 | MS.gene28869:CDS |
| GACTTACATAAAATGAAGTT+TGG | 0.326049 | 8.2:-29817852 | None:intergenic |
| AGCTGTAACAGCCGCATTCC+TGG | 0.351165 | 8.2:+29820021 | MS.gene28869:CDS |
| ATCTCCACCTCCAATTTCAT+TGG | 0.369281 | 8.2:-29817615 | None:intergenic |
| CAATGCTGCATATTCACATT+TGG | 0.374960 | 8.2:-29817686 | None:intergenic |
| TGCACCAGAGTGGGTCCACC+AGG | 0.420725 | 8.2:-29820516 | None:intergenic |
| CATGAAGCACGTAGCGATAG+TGG | 0.449986 | 8.2:+29817586 | MS.gene28869:CDS |
| CAAATGTGAATATGCAGCAT+TGG | 0.470780 | 8.2:+29817687 | MS.gene28869:CDS |
| GATGTTCTTCTTGCAGGCAT+AGG | 0.487244 | 8.2:+29817635 | MS.gene28869:CDS |
| CACTCTGGTGCAAAAGTCCC+TGG | 0.500348 | 8.2:+29820527 | MS.gene28869:CDS |
| CCCTACGGACAAGTTGAGCC+AGG | 0.518430 | 8.2:-29820545 | None:intergenic |
| CCCTGGCTCAACTTGTCCGT+AGG | 0.529099 | 8.2:+29820544 | MS.gene28869:CDS |
| AAATGTGAATATGCAGCATT+GGG | 0.532173 | 8.2:+29817688 | MS.gene28869:CDS |
| CTTCTTGCAGGCATAGGCAT+AGG | 0.545790 | 8.2:+29817641 | MS.gene28869:CDS |
| ACATCCAATGAAATTGGAGG+TGG | 0.549569 | 8.2:+29817611 | MS.gene28869:CDS |
| CCTGGCTCAACTTGTCCGTA+GGG | 0.560494 | 8.2:+29820545 | MS.gene28869:CDS |
| AGACCCTGGTGGACCCACTC+TGG | 0.574255 | 8.2:+29820512 | MS.gene28869:CDS |
| GATACATCCAATGAAATTGG+AGG | 0.601573 | 8.2:+29817608 | MS.gene28869:CDS |
| GCATAGGCATAGGCAAGGCA+AGG | 0.608211 | 8.2:+29817651 | MS.gene28869:CDS |
| TGCAGGCATAGGCATAGGCA+AGG | 0.611887 | 8.2:+29817646 | MS.gene28869:CDS |
| AAATTTCCATACCAGGAATG+CGG | 0.620718 | 8.2:-29820032 | None:intergenic |
| AAATCCGTAGTCACACCCTA+CGG | 0.621488 | 8.2:-29820560 | None:intergenic |
| GCACCAGAGTGGGTCCACCA+GGG | 0.632070 | 8.2:-29820515 | None:intergenic |
| TGTGACTATGATAGAGACCC+TGG | 0.678004 | 8.2:+29820498 | MS.gene28869:CDS |
| CCTACGGACAAGTTGAGCCA+GGG | 0.684278 | 8.2:-29820544 | None:intergenic |
| TAGGCATAGGCAAGGCAAGG+AGG | 0.705253 | 8.2:+29817654 | MS.gene28869:CDS |
| GACTATGATAGAGACCCTGG+TGG | 0.816164 | 8.2:+29820501 | MS.gene28869:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAAAATT+AGG | - | chr8.2:29817901-29817920 | None:intergenic | 0.0% |
| !! | TTAGATTAATTAACAAAAAA+AGG | + | chr8.2:29818631-29818650 | MS.gene28869:intron | 10.0% |
| !! | AAATTCTCAAAAAGATAAAA+AGG | - | chr8.2:29818564-29818583 | None:intergenic | 15.0% |
| !! | AAGTTTAAATAATACTGAAA+TGG | + | chr8.2:29818923-29818942 | MS.gene28869:intron | 15.0% |
| !! | AGTTTAAATAATACTGAAAT+GGG | + | chr8.2:29818924-29818943 | MS.gene28869:intron | 15.0% |
| !! | TTTATTCTTATGTTAATGAT+AGG | + | chr8.2:29819416-29819435 | MS.gene28869:intron | 15.0% |
| !!! | ATAAATTTTGAACATACAAA+AGG | + | chr8.2:29819569-29819588 | MS.gene28869:intron | 15.0% |
| !! | AAGGATTCGATAAAAAAAAT+AGG | - | chr8.2:29818545-29818564 | None:intergenic | 20.0% |
| !! | AGATCAAATTGTTAAGTATT+TGG | - | chr8.2:29820428-29820447 | None:intergenic | 20.0% |
| !! | ATACTTAAATAAAGTACATC+TGG | + | chr8.2:29820450-29820469 | MS.gene28869:intron | 20.0% |
| !! | GTTTAAATAATACTGAAATG+GGG | + | chr8.2:29818925-29818944 | MS.gene28869:intron | 20.0% |
| !! | TGTGTTATATGATTGTTAAA+AGG | - | chr8.2:29818196-29818215 | None:intergenic | 20.0% |
| !! | TTATGTTTGTCCAAAAAAAA+TGG | - | chr8.2:29819392-29819411 | None:intergenic | 20.0% |
| !! | TTGTTAAAAGGATATTCATT+TGG | - | chr8.2:29818184-29818203 | None:intergenic | 20.0% |
| !!! | AATACCAATCTCTATTATTT+TGG | + | chr8.2:29818260-29818279 | MS.gene28869:intron | 20.0% |
| !!! | ATAAGTAGCATTTTTTTAGT+AGG | + | chr8.2:29818489-29818508 | MS.gene28869:intron | 20.0% |
| !!! | ATTTTAGTAAGGTTTATGTA+AGG | - | chr8.2:29817975-29817994 | None:intergenic | 20.0% |
| !!! | GCAATTAAATATTATCCTTT+TGG | - | chr8.2:29818408-29818427 | None:intergenic | 20.0% |
| !!! | TGTTAATGAACCATTTTTTT+TGG | + | chr8.2:29819379-29819398 | MS.gene28869:intron | 20.0% |
| !!! | TTGTCTTTTGTAAATTCATT+TGG | - | chr8.2:29820314-29820333 | None:intergenic | 20.0% |
| !!! | TTTTTTTAAATTTCCATACC+AGG | - | chr8.2:29820042-29820061 | None:intergenic | 20.0% |
| ! | AAAAATTAGGATATGCTTCA+AGG | - | chr8.2:29817888-29817907 | None:intergenic | 25.0% |
| ! | AAAGGACTTAGATTAAAGAA+TGG | + | chr8.2:29820122-29820141 | MS.gene28869:intron | 25.0% |
| ! | AATAACAACAATATTGAGTG+AGG | + | chr8.2:29818858-29818877 | MS.gene28869:intron | 25.0% |
| ! | ACAAAAATAAGGAAAGAATG+AGG | + | chr8.2:29820154-29820173 | MS.gene28869:intron | 25.0% |
| ! | AGTCAAACATATCACAAAAA+GGG | - | chr8.2:29817764-29817783 | None:intergenic | 25.0% |
| ! | ATAAAAAAAATAGGCAAGTG+AGG | - | chr8.2:29818536-29818555 | None:intergenic | 25.0% |
| ! | ATGAAGAAAAGTGATGTAAA+TGG | - | chr8.2:29818027-29818046 | None:intergenic | 25.0% |
| ! | ATTTCTACCTACTTAACATT+TGG | + | chr8.2:29818990-29819009 | MS.gene28869:intron | 25.0% |
| ! | GACATAACACAAGAAAAAAT+CGG | - | chr8.2:29818698-29818717 | None:intergenic | 25.0% |
| ! | GACTTACATAAAATGAAGTT+TGG | - | chr8.2:29817855-29817874 | None:intergenic | 25.0% |
| ! | GATACCAAAATAATAGAGAT+TGG | - | chr8.2:29818267-29818286 | None:intergenic | 25.0% |
| ! | TAAAAAAAATAGGCAAGTGA+GGG | - | chr8.2:29818535-29818554 | None:intergenic | 25.0% |
| ! | TAAATACATCATATTCTGCT+TGG | - | chr8.2:29819646-29819665 | None:intergenic | 25.0% |
| ! | TAATACAATTACACAAGCAA+AGG | - | chr8.2:29818768-29818787 | None:intergenic | 25.0% |
| ! | TAGTCAAACATATCACAAAA+AGG | - | chr8.2:29817765-29817784 | None:intergenic | 25.0% |
| ! | TTGATGTTGAGATCTAAATT+GGG | - | chr8.2:29817810-29817829 | None:intergenic | 25.0% |
| ! | TTTACATGTAAAGTTGAACA+TGG | - | chr8.2:29819904-29819923 | None:intergenic | 25.0% |
| ! | TTTGATGTTGAGATCTAAAT+TGG | - | chr8.2:29817811-29817830 | None:intergenic | 25.0% |
| !! | AAAAATGCTACTTATATGCT+TGG | - | chr8.2:29818484-29818503 | None:intergenic | 25.0% |
| !! | TCACTAAAAAATCAGTGTTT+TGG | + | chr8.2:29818126-29818145 | MS.gene28869:intron | 25.0% |
| !!! | TTTTTAGTAGGATCATTTGA+TGG | + | chr8.2:29818501-29818520 | MS.gene28869:intron | 25.0% |
| !!! | TTTTTTCTTGTGTTATGTCT+AGG | + | chr8.2:29818699-29818718 | MS.gene28869:intron | 25.0% |
| AAAGGAAAAACAACTCATGA+AGG | + | chr8.2:29819597-29819616 | MS.gene28869:intron | 30.0% | |
| AAATGTGAATATGCAGCATT+GGG | + | chr8.2:29817688-29817707 | MS.gene28869:CDS | 30.0% | |
| AACATACAAAAGGAGAAGAA+AGG | + | chr8.2:29819579-29819598 | MS.gene28869:intron | 30.0% | |
| AAGTATTTGGATTCTGCAAA+TGG | - | chr8.2:29820415-29820434 | None:intergenic | 30.0% | |
| ACAAAGATGATGCAAGAAAT+TGG | + | chr8.2:29819534-29819553 | MS.gene28869:intron | 30.0% | |
| AGATTAAAGAATGGAGAATG+AGG | + | chr8.2:29820131-29820150 | MS.gene28869:intron | 30.0% | |
| ATTTGGATCTGATCACTATT+TGG | - | chr8.2:29820297-29820316 | None:intergenic | 30.0% | |
| TAAAGTTGAACATGGTAGAA+AGG | - | chr8.2:29819896-29819915 | None:intergenic | 30.0% | |
| TAGTAAGGTTTATGTAAGGA+AGG | - | chr8.2:29817971-29817990 | None:intergenic | 30.0% | |
| TCAACAATATGGCAAATGAA+TGG | + | chr8.2:29819690-29819709 | MS.gene28869:intron | 30.0% | |
| TCATCTTTGTCCTATTCTAT+AGG | - | chr8.2:29819524-29819543 | None:intergenic | 30.0% | |
| TCTATCTACATCACTGAAAA+TGG | + | chr8.2:29818233-29818252 | MS.gene28869:intron | 30.0% | |
| TGATGTTGAGATCTAAATTG+GGG | - | chr8.2:29817809-29817828 | None:intergenic | 30.0% | |
| TGTAAATCTGTGTTTGAACA+GGG | - | chr8.2:29819314-29819333 | None:intergenic | 30.0% | |
| ! | AGATATTCAAGATTTTGAGC+TGG | + | chr8.2:29819187-29819206 | MS.gene28869:intron | 30.0% |
| ! | GATATTCAAGATTTTGAGCT+GGG | + | chr8.2:29819188-29819207 | MS.gene28869:intron | 30.0% |
| ! | TTTTCAATCACCATGAATGA+AGG | + | chr8.2:29817923-29817942 | MS.gene28869:intron | 30.0% |
| ! | TTTTCAGTGATGTAGATAGA+AGG | - | chr8.2:29818233-29818252 | None:intergenic | 30.0% |
| !! | AAAAATCAGTGTTTTGGACT+TGG | + | chr8.2:29818132-29818151 | MS.gene28869:intron | 30.0% |
| !! | AAAATCAGTGTTTTGGACTT+GGG | + | chr8.2:29818133-29818152 | MS.gene28869:intron | 30.0% |
| !! | TTTTTCTCCTTTGAGTTATG+TGG | - | chr8.2:29819289-29819308 | None:intergenic | 30.0% |
| !!! | GGGAAGGTATTATTTTAGTA+AGG | - | chr8.2:29817986-29818005 | None:intergenic | 30.0% |
| AAATTTCCATACCAGGAATG+CGG | - | chr8.2:29820035-29820054 | None:intergenic | 35.0% | |
| ACAACAATATTGAGTGAGGA+TGG | + | chr8.2:29818862-29818881 | MS.gene28869:intron | 35.0% | |
| AGGATTAGAACCATGTAAAG+AGG | + | chr8.2:29819436-29819455 | MS.gene28869:intron | 35.0% | |
| ATACTTGCATCCTCTTTACA+TGG | - | chr8.2:29819449-29819468 | None:intergenic | 35.0% | |
| CAAATGTGAATATGCAGCAT+TGG | + | chr8.2:29817687-29817706 | MS.gene28869:CDS | 35.0% | |
| CAACAATATTGAGTGAGGAT+GGG | + | chr8.2:29818863-29818882 | MS.gene28869:intron | 35.0% | |
| CAATGCTGCATATTCACATT+TGG | - | chr8.2:29817689-29817708 | None:intergenic | 35.0% | |
| CTTCAAGCCAAATGTTAAGT+AGG | - | chr8.2:29819000-29819019 | None:intergenic | 35.0% | |
| GATACATCCAATGAAATTGG+AGG | + | chr8.2:29817608-29817627 | MS.gene28869:CDS | 35.0% | |
| GGAGAATGAGGACAAAAATA+AGG | + | chr8.2:29820143-29820162 | MS.gene28869:intron | 35.0% | |
| GGGAAATTAGAATGCATTGA+AGG | + | chr8.2:29819208-29819227 | MS.gene28869:intron | 35.0% | |
| GGGCTTAAATACTACTTGTT+GGG | + | chr8.2:29819720-29819739 | MS.gene28869:intron | 35.0% | |
| GTGGATACATCCAATGAAAT+TGG | + | chr8.2:29817605-29817624 | MS.gene28869:CDS | 35.0% | |
| GTGTAAATCTGTGTTTGAAC+AGG | - | chr8.2:29819315-29819334 | None:intergenic | 35.0% | |
| GTGTGAAGGATTCAACAATA+TGG | + | chr8.2:29819679-29819698 | MS.gene28869:intron | 35.0% | |
| TCCAAACGTGTAAGCATAAT+TGG | + | chr8.2:29820184-29820203 | MS.gene28869:intron | 35.0% | |
| TGGGCTTAAATACTACTTGT+TGG | + | chr8.2:29819719-29819738 | MS.gene28869:intron | 35.0% | |
| TGGTACTAATCTCACTCATT+TGG | + | chr8.2:29817712-29817731 | MS.gene28869:intron | 35.0% | |
| TTTAGGTCTCAACATCCAAA+AGG | + | chr8.2:29818390-29818409 | MS.gene28869:intron | 35.0% | |
| TTTGCTTCCACATAACTCAA+AGG | + | chr8.2:29819279-29819298 | MS.gene28869:intron | 35.0% | |
| ! | AAAGAGGATGCAAGTATTGT+TGG | + | chr8.2:29819452-29819471 | MS.gene28869:intron | 35.0% |
| ! | AGTGATGTAAATGGTGATGA+AGG | - | chr8.2:29818018-29818037 | None:intergenic | 35.0% |
| ! | ATTTGGCATCTGTGATTTTG+AGG | - | chr8.2:29818167-29818186 | None:intergenic | 35.0% |
| ! | CCATCTACAGTGATTTTTGA+GGG | + | chr8.2:29820207-29820226 | MS.gene28869:intron | 35.0% |
| ! | CTTAAATACTACTTGTTGGG+AGG | + | chr8.2:29819723-29819742 | MS.gene28869:intron | 35.0% |
| ! | GTGATGTAAATGGTGATGAA+GGG | - | chr8.2:29818017-29818036 | None:intergenic | 35.0% |
| ! | TTTGGCATCTGTGATTTTGA+GGG | - | chr8.2:29818166-29818185 | None:intergenic | 35.0% |
| !! | AAATCAGTGTTTTGGACTTG+GGG | + | chr8.2:29818134-29818153 | MS.gene28869:intron | 35.0% |
| !! | CATCTACAGTGATTTTTGAG+GGG | + | chr8.2:29820208-29820227 | MS.gene28869:intron | 35.0% |
| AAAAAATAGGCAAGTGAGGG+AGG | - | chr8.2:29818532-29818551 | None:intergenic | 40.0% | |
| ACAATGCACTCCTTCATTCA+TGG | - | chr8.2:29817936-29817955 | None:intergenic | 40.0% | |
| ACACTGGGAAACTTTGATGA+AGG | + | chr8.2:29819246-29819265 | MS.gene28869:intron | 40.0% | |
| ACATCCAATGAAATTGGAGG+TGG | + | chr8.2:29817611-29817630 | MS.gene28869:CDS | 40.0% | |
| AGACCTAAAATGAGCACTCT+AGG | - | chr8.2:29818379-29818398 | None:intergenic | 40.0% | |
| ATCACTATTTGGTACCTTGG+AGG | - | chr8.2:29820286-29820305 | None:intergenic | 40.0% | |
| ATCTCCACCTCCAATTTCAT+TGG | - | chr8.2:29817618-29817637 | None:intergenic | 40.0% | |
| ATGAAGGGTTTATACAGGGA+AGG | - | chr8.2:29818002-29818021 | None:intergenic | 40.0% | |
| CATATGATGCAAAACCTCCA+AGG | + | chr8.2:29820269-29820288 | MS.gene28869:intron | 40.0% | |
| CCCTCAAAAATCACTGTAGA+TGG | - | chr8.2:29820210-29820229 | None:intergenic | 40.0% | |
| CTGATCACTATTTGGTACCT+TGG | - | chr8.2:29820289-29820308 | None:intergenic | 40.0% | |
| GAATGCATTGAAGGAGTTGT+TGG | + | chr8.2:29819217-29819236 | MS.gene28869:intron | 40.0% | |
| GATTCTGCAAATGGTAGACA+TGG | - | chr8.2:29820406-29820425 | None:intergenic | 40.0% | |
| GCCAATTATGCTTACACGTT+TGG | - | chr8.2:29820188-29820207 | None:intergenic | 40.0% | |
| GGCAAATGAATGGCAATGTT+GGG | + | chr8.2:29819700-29819719 | MS.gene28869:intron | 40.0% | |
| GGTGATGAAGGGTTTATACA+GGG | - | chr8.2:29818006-29818025 | None:intergenic | 40.0% | |
| GTTGAGATCTAAATTGGGGA+AGG | - | chr8.2:29817805-29817824 | None:intergenic | 40.0% | |
| TCAAAGTTTCCCAGTGTGTT+TGG | - | chr8.2:29819243-29819262 | None:intergenic | 40.0% | |
| TCTATCATAGTCACACCCTA+CGG | - | chr8.2:29820493-29820512 | None:intergenic | 40.0% | |
| TGGCAAATGAATGGCAATGT+TGG | + | chr8.2:29819699-29819718 | MS.gene28869:intron | 40.0% | |
| ! | GCCATCTACAGTGATTTTTG+AGG | + | chr8.2:29820206-29820225 | MS.gene28869:intron | 40.0% |
| ! | TAGTAGGATCATTTGATGGC+TGG | + | chr8.2:29818505-29818524 | MS.gene28869:intron | 40.0% |
| ! | TGGTGATGAAGGGTTTATAC+AGG | - | chr8.2:29818007-29818026 | None:intergenic | 40.0% |
| !! | ACACCTAGAGTGCTCATTTT+AGG | + | chr8.2:29818373-29818392 | MS.gene28869:intron | 40.0% |
| !! | TGGTTGAGAGCACTAACATA+CGG | - | chr8.2:29820386-29820405 | None:intergenic | 40.0% |
| !!! | TCCTTTTTTCATGCTGACAG+TGG | - | chr8.2:29819987-29820006 | None:intergenic | 40.0% |
| AACCAAAACTTCGTGTCCGT+AGG | + | chr8.2:29820474-29820493 | MS.gene28869:intron | 45.0% | |
| ACCAAAACTTCGTGTCCGTA+GGG | + | chr8.2:29820475-29820494 | MS.gene28869:intron | 45.0% | |
| AGTTGTTGGCCAAACACACT+GGG | + | chr8.2:29819231-29819250 | MS.gene28869:intron | 45.0% | |
| ATAGGTCCCAAAGCCAAATG+AGG | - | chr8.2:29819506-29819525 | None:intergenic | 45.0% | |
| ATCTACTATGCGACAGCATC+AGG | + | chr8.2:29820353-29820372 | MS.gene28869:intron | 45.0% | |
| GAATCCTTCACACTATCTGC+AGG | - | chr8.2:29819672-29819691 | None:intergenic | 45.0% | |
| GATGTTCTTCTTGCAGGCAT+AGG | + | chr8.2:29817635-29817654 | MS.gene28869:CDS | 45.0% | |
| GCCACTGTCAGCATGAAAAA+AGG | + | chr8.2:29819983-29820002 | MS.gene28869:CDS | 45.0% | |
| GGAAACTTTGATGAAGGAGC+TGG | + | chr8.2:29819252-29819271 | MS.gene28869:intron | 45.0% | |
| TAGGTCCCAAAGCCAAATGA+GGG | - | chr8.2:29819505-29819524 | None:intergenic | 45.0% | |
| TGTGACTATGATAGAGACCC+TGG | + | chr8.2:29820498-29820517 | MS.gene28869:CDS | 45.0% | |
| ! | AGAGTGCTCAGTTTAGTGCT+CGG | + | chr8.2:29818443-29818462 | MS.gene28869:intron | 45.0% |
| ! | ATGCTGACAGTGGCTTTTGT+GGG | + | chr8.2:29819839-29819858 | MS.gene28869:intron | 45.0% |
| ! | GGCTCGTGTTGTTAAGTGTA+TGG | + | chr8.2:29820229-29820248 | MS.gene28869:intron | 45.0% |
| ! | GTGAATATGCAGCATTGGGT+TGG | + | chr8.2:29817692-29817711 | MS.gene28869:intron | 45.0% |
| !! | GGCTTTGGGACCTATAGAAT+AGG | + | chr8.2:29819511-29819530 | MS.gene28869:intron | 45.0% |
| !!! | GTTCCCACTTTTAAAGCCTG+CGG | + | chr8.2:29820086-29820105 | MS.gene28869:intron | 45.0% |
| AAAGCCAAATGAGGGACCAG+AGG | - | chr8.2:29819497-29819516 | None:intergenic | 50.0% | |
| AGCACCTGCAGATAGTGTGA+AGG | + | chr8.2:29819665-29819684 | MS.gene28869:intron | 50.0% | |
| CATGAAGCACGTAGCGATAG+TGG | + | chr8.2:29817586-29817605 | MS.gene28869:CDS | 50.0% | |
| CCACTGTCAGCATGAGAGAA+AGG | - | chr8.2:29819832-29819851 | None:intergenic | 50.0% | |
| CCTTTCTCTCATGCTGACAG+TGG | + | chr8.2:29819829-29819848 | MS.gene28869:intron | 50.0% | |
| CTTCTTGCAGGCATAGGCAT+AGG | + | chr8.2:29817641-29817660 | MS.gene28869:CDS | 50.0% | |
| GACTATGATAGAGACCCTGG+TGG | + | chr8.2:29820501-29820520 | MS.gene28869:CDS | 50.0% | |
| GAGTTGTTGGCCAAACACAC+TGG | + | chr8.2:29819230-29819249 | MS.gene28869:intron | 50.0% | |
| GGTGGAGATGTTCTTCTTGC+AGG | + | chr8.2:29817629-29817648 | MS.gene28869:CDS | 50.0% | |
| TAACAGCCGCATTCCTGGTA+TGG | + | chr8.2:29820026-29820045 | MS.gene28869:intron | 50.0% | |
| ! | ACCCTACGGACACGAAGTTT+TGG | - | chr8.2:29820479-29820498 | None:intergenic | 50.0% |
| ! | AGGGACTTTTGCACCAGAGT+GGG | - | chr8.2:29820528-29820547 | None:intergenic | 50.0% |
| ! | CATGCTGACAGTGGCTTTTG+TGG | + | chr8.2:29819838-29819857 | MS.gene28869:intron | 50.0% |
| ! | GCGGCTGTTACAGCTTTTGT+GGG | - | chr8.2:29820016-29820035 | None:intergenic | 50.0% |
| ! | TCTGGTCCCTCATTTGGCTT+TGG | + | chr8.2:29819496-29819515 | MS.gene28869:intron | 50.0% |
| ! | TGCGGCTGTTACAGCTTTTG+TGG | - | chr8.2:29820017-29820036 | None:intergenic | 50.0% |
| !! | CTGGTCCCTCATTTGGCTTT+GGG | + | chr8.2:29819497-29819516 | MS.gene28869:intron | 50.0% |
| !! | TGTTGGCTCTTCATTGCTGC+TGG | + | chr8.2:29819469-29819488 | MS.gene28869:intron | 50.0% |
| !! | TTCATTGCTGCTGGTTCCTC+TGG | + | chr8.2:29819478-29819497 | MS.gene28869:intron | 50.0% |
| AGCTGTAACAGCCGCATTCC+TGG | + | chr8.2:29820021-29820040 | MS.gene28869:CDS | 55.0% | |
| ATGCGACAGCATCAGGTCAC+AGG | + | chr8.2:29820360-29820379 | MS.gene28869:intron | 55.0% | |
| CACTCTGGTGCAAAAGTCCC+TGG | + | chr8.2:29820527-29820546 | MS.gene28869:CDS | 55.0% | |
| CCTGGCTCAACTTGTCCGTA+GGG | + | chr8.2:29820545-29820564 | MS.gene28869:CDS | 55.0% | |
| GCATAGGCATAGGCAAGGCA+AGG | + | chr8.2:29817651-29817670 | MS.gene28869:CDS | 55.0% | |
| GGTTCCTCTGGTCCCTCATT+TGG | + | chr8.2:29819490-29819509 | MS.gene28869:intron | 55.0% | |
| TAGGCATAGGCAAGGCAAGG+AGG | + | chr8.2:29817654-29817673 | MS.gene28869:CDS | 55.0% | |
| TGCAGGCATAGGCATAGGCA+AGG | + | chr8.2:29817646-29817665 | MS.gene28869:CDS | 55.0% | |
| ! | CAGGGACTTTTGCACCAGAG+TGG | - | chr8.2:29820529-29820548 | None:intergenic | 55.0% |
| ! | CCTACGGACAAGTTGAGCCA+GGG | - | chr8.2:29820547-29820566 | None:intergenic | 55.0% |
| !! | AGCGCCGCAGGCTTTAAAAG+TGG | - | chr8.2:29820093-29820112 | None:intergenic | 55.0% |
| !! | GCGCCGCAGGCTTTAAAAGT+GGG | - | chr8.2:29820092-29820111 | None:intergenic | 55.0% |
| CCCTGGCTCAACTTGTCCGT+AGG | + | chr8.2:29820544-29820563 | MS.gene28869:CDS | 60.0% | |
| TGCGGCGCTCACATGCTCAA+AGG | + | chr8.2:29820104-29820123 | MS.gene28869:intron | 60.0% | |
| ! | CCCTACGGACAAGTTGAGCC+AGG | - | chr8.2:29820548-29820567 | None:intergenic | 60.0% |
| ! | TTTGAGCATGTGAGCGCCGC+AGG | - | chr8.2:29820105-29820124 | None:intergenic | 60.0% |
| GCACCAGAGTGGGTCCACCA+GGG | - | chr8.2:29820518-29820537 | None:intergenic | 65.0% | |
| TGCACCAGAGTGGGTCCACC+AGG | - | chr8.2:29820519-29820538 | None:intergenic | 65.0% | |
| ! | AGACCCTGGTGGACCCACTC+TGG | + | chr8.2:29820512-29820531 | MS.gene28869:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 29817569 | 29820572 | 29817569 | ID=MS.gene28869 |
| chr8.2 | mRNA | 29817569 | 29820572 | 29817569 | ID=MS.gene28869.t1;Parent=MS.gene28869 |
| chr8.2 | exon | 29817569 | 29817709 | 29817569 | ID=MS.gene28869.t1.exon1;Parent=MS.gene28869.t1 |
| chr8.2 | CDS | 29817569 | 29817709 | 29817569 | ID=cds.MS.gene28869.t1;Parent=MS.gene28869.t1 |
| chr8.2 | exon | 29817817 | 29817867 | 29817817 | ID=MS.gene28869.t1.exon2;Parent=MS.gene28869.t1 |
| chr8.2 | CDS | 29817817 | 29817867 | 29817817 | ID=cds.MS.gene28869.t1;Parent=MS.gene28869.t1 |
| chr8.2 | exon | 29819961 | 29820042 | 29819961 | ID=MS.gene28869.t1.exon3;Parent=MS.gene28869.t1 |
| chr8.2 | CDS | 29819961 | 29820042 | 29819961 | ID=cds.MS.gene28869.t1;Parent=MS.gene28869.t1 |
| chr8.2 | exon | 29820496 | 29820572 | 29820496 | ID=MS.gene28869.t1.exon4;Parent=MS.gene28869.t1 |
| chr8.2 | CDS | 29820496 | 29820572 | 29820496 | ID=cds.MS.gene28869.t1;Parent=MS.gene28869.t1 |
| Gene Sequence |
| Protein sequence |
