Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049580.t1 | XP_013460480.1 | 92.2 | 270 | 20 | 1 | 1 | 270 | 1 | 269 | 1.50E-124 | 455.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049580.t1 | P55871 | 73.0 | 270 | 71 | 2 | 1 | 268 | 1 | 270 | 1.4e-97 | 357.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049580.t1 | A0A072UZG4 | 92.2 | 270 | 20 | 1 | 1 | 270 | 1 | 269 | 1.1e-124 | 455.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049580 | MS.gene050277 | 0.812983 | 3.22E-51 | -1.69E-46 |
| MS.gene049580 | MS.gene051676 | 0.801229 | 9.94E-49 | -1.69E-46 |
| MS.gene049580 | MS.gene051902 | 0.805187 | 1.51E-49 | -1.69E-46 |
| MS.gene049580 | MS.gene051903 | 0.816871 | 4.42E-52 | -1.69E-46 |
| MS.gene049580 | MS.gene052479 | 0.803207 | 3.89E-49 | -1.69E-46 |
| MS.gene049580 | MS.gene052947 | 0.827485 | 1.52E-54 | -1.69E-46 |
| MS.gene049580 | MS.gene053045 | 0.812565 | 3.98E-51 | -1.69E-46 |
| MS.gene049580 | MS.gene05548 | 0.802042 | 6.77E-49 | -1.69E-46 |
| MS.gene049580 | MS.gene055555 | 0.819437 | 1.16E-52 | -1.69E-46 |
| MS.gene049580 | MS.gene056631 | 0.800571 | 1.35E-48 | -1.69E-46 |
| MS.gene049580 | MS.gene057234 | 0.819146 | 1.35E-52 | -1.69E-46 |
| MS.gene049580 | MS.gene057705 | 0.82955 | 4.83E-55 | -1.69E-46 |
| MS.gene049580 | MS.gene058074 | 0.810835 | 9.46E-51 | -1.69E-46 |
| MS.gene049580 | MS.gene06001 | 0.824064 | 9.88E-54 | -1.69E-46 |
| MS.gene049580 | MS.gene061296 | 0.808812 | 2.58E-50 | -1.69E-46 |
| MS.gene049580 | MS.gene061714 | 0.818477 | 1.92E-52 | -1.69E-46 |
| MS.gene049580 | MS.gene062512 | 0.80785 | 4.13E-50 | -1.69E-46 |
| MS.gene049580 | MS.gene063026 | 0.810281 | 1.25E-50 | -1.69E-46 |
| MS.gene049580 | MS.gene06349 | -0.807824 | 4.19E-50 | -1.69E-46 |
| MS.gene049580 | MS.gene065072 | 0.823926 | 1.06E-53 | -1.69E-46 |
| MS.gene049580 | MS.gene066426 | 0.806393 | 8.41E-50 | -1.69E-46 |
| MS.gene049580 | MS.gene06667 | 0.802143 | 6.45E-49 | -1.69E-46 |
| MS.gene049580 | MS.gene067571 | 0.819217 | 1.30E-52 | -1.69E-46 |
| MS.gene049580 | MS.gene06837 | 0.818289 | 2.12E-52 | -1.69E-46 |
| MS.gene049580 | MS.gene068565 | 0.812392 | 4.34E-51 | -1.69E-46 |
| MS.gene049580 | MS.gene06883 | 0.824566 | 7.53E-54 | -1.69E-46 |
| MS.gene049580 | MS.gene069310 | 0.834924 | 2.26E-56 | -1.69E-46 |
| MS.gene049580 | MS.gene069828 | 0.832015 | 1.20E-55 | -1.69E-46 |
| MS.gene049580 | MS.gene06982 | 0.824319 | 8.61E-54 | -1.69E-46 |
| MS.gene049580 | MS.gene06984 | 0.839153 | 1.88E-57 | -1.69E-46 |
| MS.gene049580 | MS.gene070271 | 0.848613 | 5.48E-60 | -1.69E-46 |
| MS.gene049580 | MS.gene07100 | 0.815453 | 9.18E-52 | -1.69E-46 |
| MS.gene049580 | MS.gene07101 | 0.819297 | 1.25E-52 | -1.69E-46 |
| MS.gene049580 | MS.gene071960 | 0.818475 | 1.92E-52 | -1.69E-46 |
| MS.gene049580 | MS.gene071987 | 0.814832 | 1.26E-51 | -1.69E-46 |
| MS.gene049580 | MS.gene072057 | 0.837644 | 4.60E-57 | -1.69E-46 |
| MS.gene049580 | MS.gene07222 | 0.824281 | 8.79E-54 | -1.69E-46 |
| MS.gene049580 | MS.gene073207 | 0.8109 | 9.16E-51 | -1.69E-46 |
| MS.gene049580 | MS.gene073300 | 0.823482 | 1.35E-53 | -1.69E-46 |
| MS.gene049580 | MS.gene073332 | 0.81067 | 1.03E-50 | -1.69E-46 |
| MS.gene049580 | MS.gene07339 | 0.804607 | 1.99E-49 | -1.69E-46 |
| MS.gene049580 | MS.gene073564 | 0.829991 | 3.78E-55 | -1.69E-46 |
| MS.gene049580 | MS.gene073670 | 0.836077 | 1.16E-56 | -1.69E-46 |
| MS.gene049580 | MS.gene07388 | 0.828702 | 7.76E-55 | -1.69E-46 |
| MS.gene049580 | MS.gene074603 | 0.804423 | 2.18E-49 | -1.69E-46 |
| MS.gene049580 | MS.gene08108 | 0.8167 | 4.83E-52 | -1.69E-46 |
| MS.gene049580 | MS.gene08649 | 0.816201 | 6.25E-52 | -1.69E-46 |
| MS.gene049580 | MS.gene09295 | 0.802146 | 6.44E-49 | -1.69E-46 |
| MS.gene049580 | MS.gene09850 | 0.833168 | 6.23E-56 | -1.69E-46 |
| MS.gene049580 | MS.gene20740 | 0.82216 | 2.75E-53 | -1.69E-46 |
| MS.gene049580 | MS.gene21791 | 0.80518 | 1.51E-49 | -1.69E-46 |
| MS.gene049580 | MS.gene23059 | 0.801691 | 7.99E-49 | -1.69E-46 |
| MS.gene049580 | MS.gene23060 | 0.812963 | 3.25E-51 | -1.69E-46 |
| MS.gene049580 | MS.gene23954 | 0.851315 | 9.61E-61 | -1.69E-46 |
| MS.gene049580 | MS.gene24539 | 0.811233 | 7.76E-51 | -1.69E-46 |
| MS.gene049580 | MS.gene24846 | 0.818804 | 1.62E-52 | -1.69E-46 |
| MS.gene049580 | MS.gene24847 | 0.821295 | 4.36E-53 | -1.69E-46 |
| MS.gene049580 | MS.gene24930 | 0.803128 | 4.04E-49 | -1.69E-46 |
| MS.gene049580 | MS.gene26962 | 0.805501 | 1.30E-49 | -1.69E-46 |
| MS.gene049580 | MS.gene28869 | 0.800232 | 1.59E-48 | -1.69E-46 |
| MS.gene049580 | MS.gene29492 | 0.838267 | 3.18E-57 | -1.69E-46 |
| MS.gene049580 | MS.gene32551 | 0.822114 | 2.82E-53 | -1.69E-46 |
| MS.gene049580 | MS.gene33788 | 0.852381 | 4.79E-61 | -1.69E-46 |
| MS.gene049580 | MS.gene35069 | 0.803764 | 2.98E-49 | -1.69E-46 |
| MS.gene049580 | MS.gene35211 | 0.805827 | 1.11E-49 | -1.69E-46 |
| MS.gene049580 | MS.gene35499 | 0.812032 | 5.20E-51 | -1.69E-46 |
| MS.gene049580 | MS.gene36468 | 0.803185 | 3.93E-49 | -1.69E-46 |
| MS.gene049580 | MS.gene36568 | 0.810029 | 1.41E-50 | -1.69E-46 |
| MS.gene049580 | MS.gene36625 | 0.801426 | 9.05E-49 | -1.69E-46 |
| MS.gene049580 | MS.gene37345 | -0.838297 | 3.13E-57 | -1.69E-46 |
| MS.gene049580 | MS.gene37471 | 0.801737 | 7.82E-49 | -1.69E-46 |
| MS.gene049580 | MS.gene39213 | 0.808475 | 3.04E-50 | -1.69E-46 |
| MS.gene049580 | MS.gene40446 | 0.80952 | 1.82E-50 | -1.69E-46 |
| MS.gene049580 | MS.gene40908 | 0.808335 | 3.26E-50 | -1.69E-46 |
| MS.gene049580 | MS.gene41086 | 0.860139 | 2.54E-63 | -1.69E-46 |
| MS.gene049580 | MS.gene42057 | 0.842939 | 1.90E-58 | -1.69E-46 |
| MS.gene049580 | MS.gene44141 | 0.822258 | 2.61E-53 | -1.69E-46 |
| MS.gene049580 | MS.gene44240 | 0.812774 | 3.58E-51 | -1.69E-46 |
| MS.gene049580 | MS.gene46390 | 0.811358 | 7.29E-51 | -1.69E-46 |
| MS.gene049580 | MS.gene46392 | 0.805849 | 1.09E-49 | -1.69E-46 |
| MS.gene049580 | MS.gene49777 | 0.825322 | 4.99E-54 | -1.69E-46 |
| MS.gene049580 | MS.gene51145 | 0.832072 | 1.16E-55 | -1.69E-46 |
| MS.gene049580 | MS.gene53374 | 0.815176 | 1.06E-51 | -1.69E-46 |
| MS.gene049580 | MS.gene54814 | 0.815328 | 9.78E-52 | -1.69E-46 |
| MS.gene049580 | MS.gene55094 | 0.801199 | 1.01E-48 | -1.69E-46 |
| MS.gene049580 | MS.gene55732 | 0.825755 | 3.94E-54 | -1.69E-46 |
| MS.gene049580 | MS.gene56011 | 0.833121 | 6.40E-56 | -1.69E-46 |
| MS.gene049580 | MS.gene56656 | 0.80196 | 7.03E-49 | -1.69E-46 |
| MS.gene049580 | MS.gene57210 | 0.802296 | 6.00E-49 | -1.69E-46 |
| MS.gene049580 | MS.gene58227 | 0.822169 | 2.74E-53 | -1.69E-46 |
| MS.gene049580 | MS.gene58438 | 0.820738 | 5.85E-53 | -1.69E-46 |
| MS.gene049580 | MS.gene58719 | 0.818434 | 1.96E-52 | -1.69E-46 |
| MS.gene049580 | MS.gene59505 | 0.802843 | 4.63E-49 | -1.69E-46 |
| MS.gene049580 | MS.gene59616 | 0.808586 | 2.88E-50 | -1.69E-46 |
| MS.gene049580 | MS.gene60216 | 0.807695 | 4.46E-50 | -1.69E-46 |
| MS.gene049580 | MS.gene60717 | 0.818676 | 1.73E-52 | -1.69E-46 |
| MS.gene049580 | MS.gene61254 | 0.808062 | 3.72E-50 | -1.69E-46 |
| MS.gene049580 | MS.gene61543 | 0.858756 | 6.62E-63 | -1.69E-46 |
| MS.gene049580 | MS.gene62834 | 0.853181 | 2.83E-61 | -1.69E-46 |
| MS.gene049580 | MS.gene63726 | 0.803842 | 2.87E-49 | -1.69E-46 |
| MS.gene049580 | MS.gene64395 | 0.8188 | 1.62E-52 | -1.69E-46 |
| MS.gene049580 | MS.gene64517 | 0.80769 | 4.47E-50 | -1.69E-46 |
| MS.gene049580 | MS.gene64674 | 0.833864 | 4.18E-56 | -1.69E-46 |
| MS.gene049580 | MS.gene64806 | 0.802556 | 5.30E-49 | -1.69E-46 |
| MS.gene049580 | MS.gene65076 | 0.800364 | 1.49E-48 | -1.69E-46 |
| MS.gene049580 | MS.gene65946 | 0.800236 | 1.58E-48 | -1.69E-46 |
| MS.gene049580 | MS.gene66979 | 0.82098 | 5.15E-53 | -1.69E-46 |
| MS.gene049580 | MS.gene67485 | 0.829862 | 4.06E-55 | -1.69E-46 |
| MS.gene049580 | MS.gene67884 | 0.80219 | 6.31E-49 | -1.69E-46 |
| MS.gene049580 | MS.gene69262 | 0.832221 | 1.07E-55 | -1.69E-46 |
| MS.gene049580 | MS.gene69499 | 0.807779 | 4.28E-50 | -1.69E-46 |
| MS.gene049580 | MS.gene69921 | 0.811366 | 7.26E-51 | -1.69E-46 |
| MS.gene049580 | MS.gene70577 | 0.806704 | 7.23E-50 | -1.69E-46 |
| MS.gene049580 | MS.gene72285 | 0.825686 | 4.09E-54 | -1.69E-46 |
| MS.gene049580 | MS.gene72612 | 0.808525 | 2.97E-50 | -1.69E-46 |
| MS.gene049580 | MS.gene73234 | 0.811731 | 6.05E-51 | -1.69E-46 |
| MS.gene049580 | MS.gene75148 | 0.813138 | 2.98E-51 | -1.69E-46 |
| MS.gene049580 | MS.gene76248 | 0.837868 | 4.03E-57 | -1.69E-46 |
| MS.gene049580 | MS.gene78232 | 0.811723 | 6.07E-51 | -1.69E-46 |
| MS.gene049580 | MS.gene80668 | 0.804912 | 1.72E-49 | -1.69E-46 |
| MS.gene049580 | MS.gene80795 | 0.811868 | 5.64E-51 | -1.69E-46 |
| MS.gene049580 | MS.gene83155 | 0.818012 | 2.45E-52 | -1.69E-46 |
| MS.gene049580 | MS.gene83217 | 0.806752 | 7.06E-50 | -1.69E-46 |
| MS.gene049580 | MS.gene83218 | 0.807454 | 5.02E-50 | -1.69E-46 |
| MS.gene049580 | MS.gene83326 | 0.848315 | 6.63E-60 | -1.69E-46 |
| MS.gene049580 | MS.gene84455 | 0.828807 | 7.32E-55 | -1.69E-46 |
| MS.gene049580 | MS.gene86381 | 0.809249 | 2.08E-50 | -1.69E-46 |
| MS.gene049580 | MS.gene86392 | 0.853534 | 2.24E-61 | -1.69E-46 |
| MS.gene049580 | MS.gene87969 | 0.819651 | 1.04E-52 | -1.69E-46 |
| MS.gene049580 | MS.gene89027 | 0.861215 | 1.20E-63 | -1.69E-46 |
| MS.gene049580 | MS.gene89562 | 0.816964 | 4.22E-52 | -1.69E-46 |
| MS.gene049580 | MS.gene89648 | 0.812202 | 4.77E-51 | -1.69E-46 |
| MS.gene049580 | MS.gene89663 | 0.807899 | 4.03E-50 | -1.69E-46 |
| MS.gene049580 | MS.gene89721 | 0.816519 | 5.30E-52 | -1.69E-46 |
| MS.gene049580 | MS.gene91203 | 0.815843 | 7.51E-52 | -1.69E-46 |
| MS.gene049580 | MS.gene92135 | 0.834187 | 3.46E-56 | -1.69E-46 |
| MS.gene049580 | MS.gene92557 | 0.860082 | 2.65E-63 | -1.69E-46 |
| MS.gene049580 | MS.gene92572 | 0.836789 | 7.61E-57 | -1.69E-46 |
| MS.gene049580 | MS.gene92970 | 0.805887 | 1.07E-49 | -1.69E-46 |
| MS.gene049580 | MS.gene93155 | 0.8118 | 5.84E-51 | -1.69E-46 |
| MS.gene049580 | MS.gene93983 | 0.804323 | 2.28E-49 | -1.69E-46 |
| MS.gene049580 | MS.gene95469 | 0.83262 | 8.52E-56 | -1.69E-46 |
| MS.gene049580 | MS.gene96322 | 0.804126 | 2.51E-49 | -1.69E-46 |
| MS.gene049580 | MS.gene96338 | 0.830276 | 3.22E-55 | -1.69E-46 |
| MS.gene049580 | MS.gene96814 | -0.816244 | 6.11E-52 | -1.69E-46 |
| MS.gene049580 | MS.gene97237 | 0.803977 | 2.69E-49 | -1.69E-46 |
| MS.gene049580 | MS.gene97738 | 0.809397 | 1.93E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene049580 | MS.gene061898 | PPI |
| MS.gene018560 | MS.gene049580 | PPI |
| MS.gene09852 | MS.gene049580 | PPI |
| MS.gene049580 | MS.gene64519 | PPI |
| MS.gene049580 | MS.gene060216 | PPI |
| MS.gene025997 | MS.gene049580 | PPI |
| MS.gene049580 | MS.gene22877 | PPI |
| MS.gene063366 | MS.gene049580 | PPI |
| MS.gene049580 | MS.gene63721 | PPI |
| MS.gene066163 | MS.gene049580 | PPI |
| MS.gene049580 | MS.gene058030 | PPI |
| MS.gene040581 | MS.gene049580 | PPI |
| MS.gene049580 | MS.gene024538 | PPI |
| MS.gene049580 | MS.gene039110 | PPI |
| MS.gene003452 | MS.gene049580 | PPI |
| MS.gene52139 | MS.gene049580 | PPI |
| MS.gene049580 | MS.gene050556 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049580.t1 | MTR_3g467620 | 98.148 | 270 | 4 | 1 | 1 | 270 | 1 | 269 | 0.0 | 536 |
| MS.gene049580.t1 | MTR_5g075530 | 83.577 | 274 | 40 | 3 | 1 | 269 | 49 | 322 | 2.06e-145 | 410 |
| MS.gene049580.t1 | MTR_5g075530 | 77.457 | 173 | 34 | 3 | 1 | 168 | 49 | 221 | 1.25e-66 | 207 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049580.t1 | AT5G20920 | 74.721 | 269 | 61 | 5 | 1 | 265 | 1 | 266 | 4.20e-130 | 369 |
| MS.gene049580.t1 | AT5G20920 | 74.721 | 269 | 61 | 5 | 1 | 265 | 1 | 266 | 4.20e-130 | 369 |
| MS.gene049580.t1 | AT5G20920 | 74.721 | 269 | 60 | 6 | 1 | 265 | 1 | 265 | 6.12e-129 | 367 |
| MS.gene049580.t1 | AT3G07920 | 70.395 | 152 | 37 | 2 | 118 | 265 | 17 | 164 | 1.54e-70 | 214 |
| MS.gene049580.t1 | AT5G01940 | 57.042 | 142 | 56 | 3 | 114 | 254 | 72 | 209 | 8.17e-49 | 161 |
| MS.gene049580.t1 | AT5G01940 | 57.042 | 142 | 56 | 3 | 114 | 254 | 104 | 241 | 1.41e-48 | 161 |
| MS.gene049580.t1 | AT5G01940 | 53.846 | 156 | 63 | 4 | 114 | 262 | 72 | 225 | 1.23e-46 | 156 |
Find 58 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTTTCTTGCTCGCAGAAC+TGG | 0.219121 | 3.2:-58389188 | MS.gene049580:CDS |
| CGCCGGTCTCCAGCAAGTTC+TGG | 0.280426 | 3.2:+58389592 | None:intergenic |
| AAAATTCCTTCGAAGTTCTT+TGG | 0.281091 | 3.2:+58389109 | None:intergenic |
| CCTTGCAACCTCGTTACCCT+TGG | 0.397283 | 3.2:-58390238 | MS.gene049580:CDS |
| TATTTATTGCAGTGTGGATC+AGG | 0.401957 | 3.2:-58388278 | MS.gene049580:intron |
| CGTGTTGGCCGTAGGACTGC+TGG | 0.416736 | 3.2:-58388218 | MS.gene049580:CDS |
| GAGAATAATCCAGAACTTGC+TGG | 0.427102 | 3.2:-58389601 | MS.gene049580:CDS |
| TCCTTTGAAAGTATCGTGTC+AGG | 0.433098 | 3.2:+58388951 | None:intergenic |
| GATGAATATGTCATTTGCCT+TGG | 0.446437 | 3.2:-58388984 | MS.gene049580:CDS |
| GCAACAAAACCAGCCTTGAT+AGG | 0.448200 | 3.2:+58388242 | None:intergenic |
| GTTCTTTCTCCGGTGTGAAA+AGG | 0.449900 | 3.2:-58388919 | MS.gene049580:intron |
| AAGAAAGCCATGACATGATC+TGG | 0.453989 | 3.2:+58389202 | None:intergenic |
| GGTACAAGTGGTTCTCTAGA+TGG | 0.461160 | 3.2:-58389166 | MS.gene049580:CDS |
| CTTGCAACCTCGTTACCCTT+GGG | 0.463993 | 3.2:-58390237 | MS.gene049580:CDS |
| TCTAGATGGACAGCAGAGAT+TGG | 0.466810 | 3.2:-58389152 | MS.gene049580:CDS |
| GGGTTTGACAGTACATTAGC+TGG | 0.474950 | 3.2:-58390606 | MS.gene049580:CDS |
| AAGATCAGTTGCACCTATCA+AGG | 0.492968 | 3.2:-58388255 | MS.gene049580:CDS |
| AGAACCGTTTGTTCTTTCTC+CGG | 0.497985 | 3.2:-58388929 | MS.gene049580:CDS |
| CACACCGGAGAAAGAACAAA+CGG | 0.501705 | 3.2:+58388925 | None:intergenic |
| ATCCAGAACTTGCTGGAGAC+CGG | 0.505136 | 3.2:-58389594 | MS.gene049580:CDS |
| TTGTTGCTCGTGTTGGCCGT+AGG | 0.510944 | 3.2:-58388226 | MS.gene049580:CDS |
| TCAGTTGCACCTATCAAGGC+TGG | 0.525265 | 3.2:-58388251 | MS.gene049580:CDS |
| GCTTTCTTGCTCGCAGAACT+GGG | 0.527421 | 3.2:-58389187 | MS.gene049580:CDS |
| CTCCTCAGATCACGCTGAAG+AGG | 0.531791 | 3.2:-58390279 | MS.gene049580:intron |
| AGAGATTGGTTGTGAAGGGA+AGG | 0.537518 | 3.2:-58389138 | MS.gene049580:CDS |
| GAGAAGACAGAAAATCTGTC+AGG | 0.538239 | 3.2:-58390761 | MS.gene049580:intron |
| GTGCCCTCACGAAGCACTTG+TGG | 0.543726 | 3.2:+58389550 | None:intergenic |
| CAGCAGAGATTGGTTGTGAA+GGG | 0.544525 | 3.2:-58389142 | MS.gene049580:CDS |
| TCATCAAGATCTACCACTGC+GGG | 0.548138 | 3.2:+58390806 | None:intergenic |
| TGAAGCACAGATTGATGTGA+AGG | 0.549994 | 3.2:-58391122 | MS.gene049580:CDS |
| TCCTCAGATCACGCTGAAGA+GGG | 0.551051 | 3.2:-58390278 | MS.gene049580:intron |
| CCTGGTCTTTCAGGATGCAT+CGG | 0.556067 | 3.2:-58389228 | MS.gene049580:intron |
| CACAATCACTTCCTTCCCAA+GGG | 0.571891 | 3.2:+58390222 | None:intergenic |
| ACAGATTGATGTGAAGGAAG+AGG | 0.574813 | 3.2:-58391116 | MS.gene049580:CDS |
| ACCGGCGTAGGACTGTTATG+AGG | 0.576935 | 3.2:-58389576 | MS.gene049580:CDS |
| ATGTCCCTCCAGCAGTCCTA+CGG | 0.579897 | 3.2:+58388210 | None:intergenic |
| ACAGCAGAGATTGGTTGTGA+AGG | 0.584946 | 3.2:-58389143 | MS.gene049580:CDS |
| TCACAATCACTTCCTTCCCA+AGG | 0.588652 | 3.2:+58390221 | None:intergenic |
| CAACCTCGTTACCCTTGGGA+AGG | 0.592495 | 3.2:-58390233 | MS.gene049580:CDS |
| TTTGCACCAAAGAACTTCGA+AGG | 0.593663 | 3.2:-58389115 | MS.gene049580:CDS |
| CTCGCAGAACTGGGTACAAG+TGG | 0.594988 | 3.2:-58389178 | MS.gene049580:CDS |
| AATCTGTGCTTCATCTGCCA+TGG | 0.597125 | 3.2:+58391132 | None:intergenic |
| CCAAGGGTAACGAGGTTGCA+AGG | 0.598454 | 3.2:+58390238 | None:intergenic |
| CCCTCACGAAGCACTTGTGG+TGG | 0.602954 | 3.2:+58389553 | None:intergenic |
| GCCACCACAAGTGCTTCGTG+AGG | 0.609200 | 3.2:-58389554 | MS.gene049580:CDS |
| TGATGATTCAGTAGACAAGT+TGG | 0.613548 | 3.2:-58390786 | MS.gene049580:CDS |
| TCCTGACACGATACTTTCAA+AGG | 0.615897 | 3.2:-58388952 | MS.gene049580:CDS |
| CTTCCTTCCCAAGGGTAACG+AGG | 0.616919 | 3.2:+58390230 | None:intergenic |
| GCCTCATAACAGTCCTACGC+CGG | 0.621949 | 3.2:+58389575 | None:intergenic |
| GATCACGCTGAAGAGGGTGA+AGG | 0.625346 | 3.2:-58390272 | MS.gene049580:CDS |
| GTTGGCCGTAGGACTGCTGG+AGG | 0.632202 | 3.2:-58388215 | MS.gene049580:CDS |
| CCACCACAAGTGCTTCGTGA+GGG | 0.634193 | 3.2:-58389553 | MS.gene049580:CDS |
| TCGGCAGCCAGATCATGTCA+TGG | 0.653346 | 3.2:-58389209 | MS.gene049580:CDS |
| AACTTGCTGGAGACCGGCGT+AGG | 0.658489 | 3.2:-58389588 | MS.gene049580:CDS |
| TTGGCCGTAGGACTGCTGGA+GGG | 0.698921 | 3.2:-58388214 | MS.gene049580:CDS |
| ATCATCAAGATCTACCACTG+CGG | 0.727185 | 3.2:+58390805 | None:intergenic |
| TGATTGTGATTATCAATACG+AGG | 0.732928 | 3.2:-58390207 | MS.gene049580:CDS |
| TTGTGATTATCAATACGAGG+AGG | 0.736960 | 3.2:-58390204 | MS.gene049580:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAAAAAGAACATAATATAT+AGG | + | chr3.2:58390335-58390354 | None:intergenic | 15.0% |
| !! | TCATTGAAATTGTAAAATAT+TGG | + | chr3.2:58390912-58390931 | None:intergenic | 15.0% |
| !!! | AGTATTATTTGTCATAATTT+TGG | - | chr3.2:58389638-58389657 | MS.gene049580:intron | 15.0% |
| !!! | ATATTTTGGAATTTTTTACA+TGG | - | chr3.2:58389381-58389400 | MS.gene049580:intron | 15.0% |
| !!! | TTAACTTCTTTTAAGAATTA+AGG | + | chr3.2:58389012-58389031 | None:intergenic | 15.0% |
| !!! | TTATTTTTATTGATGATTGT+AGG | - | chr3.2:58388894-58388913 | MS.gene049580:intron | 15.0% |
| !! | ATATATTAGTAAGTATCTTG+TGG | - | chr3.2:58390258-58390277 | MS.gene049580:CDS | 20.0% |
| !! | TACAAGAGAAACTATTAAAA+AGG | + | chr3.2:58390672-58390691 | None:intergenic | 20.0% |
| !!! | AACTGTTTTTGTGAATTTTA+TGG | - | chr3.2:58389817-58389836 | MS.gene049580:intron | 20.0% |
| !!! | ATTAGAGAATAATTTTACAC+CGG | + | chr3.2:58389211-58389230 | None:intergenic | 20.0% |
| !!! | ATTTTTTACATGGAACTTAT+TGG | - | chr3.2:58389391-58389410 | MS.gene049580:intron | 20.0% |
| !!! | CTTTCATAAGTAATTTTTCA+TGG | + | chr3.2:58390806-58390825 | None:intergenic | 20.0% |
| !!! | GATTTGAAATATTCAACTTT+AGG | + | chr3.2:58390775-58390794 | None:intergenic | 20.0% |
| !!! | TATACGTTACTTTTCATATT+TGG | - | chr3.2:58389282-58389301 | MS.gene049580:intron | 20.0% |
| !!! | TATTTTATGCTATTAAGTCT+TGG | - | chr3.2:58388626-58388645 | MS.gene049580:intron | 20.0% |
| !!! | TCTCTAAAAGAAAAAATTCA+CGG | + | chr3.2:58390941-58390960 | None:intergenic | 20.0% |
| !!! | TTTTTCTTCTTCTTTTTAGT+AGG | + | chr3.2:58388508-58388527 | None:intergenic | 20.0% |
| !!! | TTTTTGATGCAATAATAGAA+AGG | + | chr3.2:58390072-58390091 | None:intergenic | 20.0% |
| ! | AATCAGTTGAGAAACATTTA+TGG | + | chr3.2:58389254-58389273 | None:intergenic | 25.0% |
| ! | AATCTGCAATTAACAAATTC+AGG | + | chr3.2:58388473-58388492 | None:intergenic | 25.0% |
| ! | AATTAGAATTGTTCAAGAAC+AGG | + | chr3.2:58388688-58388707 | None:intergenic | 25.0% |
| ! | ATATATCATGAAGCTATTGT+TGG | + | chr3.2:58389540-58389559 | None:intergenic | 25.0% |
| ! | ATATCTTGTACTTTATGATG+TGG | - | chr3.2:58391017-58391036 | MS.gene049580:intron | 25.0% |
| ! | TAATGAGTTCAAGAAAGAAA+TGG | + | chr3.2:58390639-58390658 | None:intergenic | 25.0% |
| ! | TATCTTGTACTTTATGATGT+GGG | - | chr3.2:58391018-58391037 | MS.gene049580:intron | 25.0% |
| ! | TGTGGTTATAATTAACTTTG+AGG | + | chr3.2:58389983-58390002 | None:intergenic | 25.0% |
| ! | TTCGTCAATTTCTAAATTTC+AGG | + | chr3.2:58390522-58390541 | None:intergenic | 25.0% |
| !! | AATTAACTTTGAGGAAATCA+TGG | + | chr3.2:58389974-58389993 | None:intergenic | 25.0% |
| !! | CGTTTTTGTATTATTGTTGT+GGG | - | chr3.2:58389510-58389529 | MS.gene049580:CDS | 25.0% |
| !! | GCATGATATAAATTTTGTGT+TGG | + | chr3.2:58388990-58389009 | None:intergenic | 25.0% |
| !! | GTAATTTTTCATGGATCAAT+TGG | + | chr3.2:58390797-58390816 | None:intergenic | 25.0% |
| !! | TAAATTTTGTGTTGGATAGT+TGG | + | chr3.2:58388982-58389001 | None:intergenic | 25.0% |
| !! | TGGTTTTTCATATAACACTA+TGG | + | chr3.2:58390619-58390638 | None:intergenic | 25.0% |
| !!! | AACTTCAAATACACTTTTTG+TGG | + | chr3.2:58390001-58390020 | None:intergenic | 25.0% |
| !!! | AATTTGAAACATTTTCCTAC+AGG | + | chr3.2:58390741-58390760 | None:intergenic | 25.0% |
| !!! | ATTTTGGTAGTTTTATGCAT+TGG | - | chr3.2:58388270-58388289 | MS.gene049580:intron | 25.0% |
| !!! | GTCTTTAATGTTATTTTCTG+AGG | - | chr3.2:58388648-58388667 | MS.gene049580:intron | 25.0% |
| !!! | TAAGTTTGCACAATTGATTT+TGG | - | chr3.2:58388254-58388273 | MS.gene049580:CDS | 25.0% |
| !!! | TCGTTTTTGTATTATTGTTG+TGG | - | chr3.2:58389509-58389528 | MS.gene049580:CDS | 25.0% |
| !!! | TTCAAATCTCTTTGATTTGT+TGG | - | chr3.2:58388411-58388430 | MS.gene049580:intron | 25.0% |
| !!! | TTCTTTTTAGTAGGATCAAA+TGG | + | chr3.2:58388499-58388518 | None:intergenic | 25.0% |
| AAAAATATCAGAATGCAGAC+AGG | + | chr3.2:58389679-58389698 | None:intergenic | 30.0% | |
| AAAATTCCTTCGAAGTTCTT+TGG | + | chr3.2:58390232-58390251 | None:intergenic | 30.0% | |
| ATATAAACGCATATTTGAGG+AGG | + | chr3.2:58389434-58389453 | None:intergenic | 30.0% | |
| ATGAACTGTTATTAAGCCTT+TGG | - | chr3.2:58390298-58390317 | MS.gene049580:intron | 30.0% | |
| CACAGCCTATAAAACTAATA+TGG | + | chr3.2:58389342-58389361 | None:intergenic | 30.0% | |
| TAACAAATTCAGGCATTAGA+AGG | + | chr3.2:58388463-58388482 | None:intergenic | 30.0% | |
| TATATGGATTCTGCTTTCAA+GGG | - | chr3.2:58389449-58389468 | MS.gene049580:intron | 30.0% | |
| TCCATATAAACGCATATTTG+AGG | + | chr3.2:58389437-58389456 | None:intergenic | 30.0% | |
| TCCTCAAATATGCGTTTATA+TGG | - | chr3.2:58389433-58389452 | MS.gene049580:intron | 30.0% | |
| TCTTGAACTCATTAATCTGT+AGG | - | chr3.2:58390645-58390664 | MS.gene049580:intron | 30.0% | |
| TGAACTGTTATTAAGCCTTT+GGG | - | chr3.2:58390299-58390318 | MS.gene049580:intron | 30.0% | |
| TGAGAAACATTTATGGAACT+AGG | + | chr3.2:58389247-58389266 | None:intergenic | 30.0% | |
| TGATGCGAAAAATGAAGATT+TGG | - | chr3.2:58388948-58388967 | MS.gene049580:CDS | 30.0% | |
| TGATTGTGATTATCAATACG+AGG | - | chr3.2:58389131-58389150 | MS.gene049580:CDS | 30.0% | |
| TTATATGGATTCTGCTTTCA+AGG | - | chr3.2:58389448-58389467 | MS.gene049580:intron | 30.0% | |
| ! | AACATCAGCCTACAATTTTA+GGG | - | chr3.2:58390968-58390987 | MS.gene049580:intron | 30.0% |
| ! | AATCAACATACGTTTTGCAA+AGG | + | chr3.2:58389844-58389863 | None:intergenic | 30.0% |
| ! | ATAGGTCAATTTTTACCCAA+AGG | + | chr3.2:58390317-58390336 | None:intergenic | 30.0% |
| ! | ATATTTTTCTGTGCAGCTTT+TGG | - | chr3.2:58389691-58389710 | MS.gene049580:intron | 30.0% |
| ! | GAACAACATGAAAGTACATA+AGG | - | chr3.2:58390023-58390042 | MS.gene049580:intron | 30.0% |
| ! | GCATTTTCTTCTGTTATCAT+AGG | - | chr3.2:58389614-58389633 | MS.gene049580:CDS | 30.0% |
| ! | GTGACTGGTTATAACTTATA+AGG | - | chr3.2:58388313-58388332 | MS.gene049580:intron | 30.0% |
| ! | TAACATCAGCCTACAATTTT+AGG | - | chr3.2:58390967-58390986 | MS.gene049580:intron | 30.0% |
| ! | TAGTGACTTGTATTCTTAGT+TGG | - | chr3.2:58388385-58388404 | MS.gene049580:intron | 30.0% |
| ! | TATTTTTCTGTGCAGCTTTT+GGG | - | chr3.2:58389692-58389711 | MS.gene049580:intron | 30.0% |
| !! | AGTTTTATAGGCTGTGTTTT+GGG | - | chr3.2:58389346-58389365 | MS.gene049580:intron | 30.0% |
| !!! | CGTTACTTTTCATATTTGGA+CGG | - | chr3.2:58389286-58389305 | MS.gene049580:intron | 30.0% |
| !!! | TAGTTTTATAGGCTGTGTTT+TGG | - | chr3.2:58389345-58389364 | MS.gene049580:intron | 30.0% |
| !!! | TGTCGCCATATTAGTTTTAT+AGG | - | chr3.2:58389334-58389353 | MS.gene049580:intron | 30.0% |
| AACATTTATGGAACTAGGTG+AGG | + | chr3.2:58389242-58389261 | None:intergenic | 35.0% | |
| ACATTTATGGAACTAGGTGA+GGG | + | chr3.2:58389241-58389260 | None:intergenic | 35.0% | |
| CAACAATTCAAATGACCTAC+AGG | + | chr3.2:58388780-58388799 | None:intergenic | 35.0% | |
| CAATTGTGCAAACTTACATC+AGG | + | chr3.2:58388250-58388269 | None:intergenic | 35.0% | |
| CAGAACTCTACAATTTCAGA+AGG | + | chr3.2:58390488-58390507 | None:intergenic | 35.0% | |
| CAGTCACATGAAACATGTAT+AGG | + | chr3.2:58388300-58388319 | None:intergenic | 35.0% | |
| CTATACATGTTTCATGTGAC+TGG | - | chr3.2:58388298-58388317 | MS.gene049580:intron | 35.0% | |
| GAGATATACAGAGAGGAAAT+TGG | + | chr3.2:58390460-58390479 | None:intergenic | 35.0% | |
| GCGAAAAATGAAGATTTGGA+TGG | - | chr3.2:58388952-58388971 | MS.gene049580:CDS | 35.0% | |
| GCTGTCAACTACATGTTATT+TGG | - | chr3.2:58389880-58389899 | MS.gene049580:intron | 35.0% | |
| GCTTTAGTCCCTAAAATTGT+AGG | + | chr3.2:58390979-58390998 | None:intergenic | 35.0% | |
| GTAGGTCATTTGAATTGTTG+TGG | - | chr3.2:58388780-58388799 | MS.gene049580:intron | 35.0% | |
| GTAGTGTATTTATTGCAGTG+TGG | - | chr3.2:58391054-58391073 | MS.gene049580:intron | 35.0% | |
| GTTTCTCTTGTAGTCTTTCT+AGG | - | chr3.2:58390680-58390699 | MS.gene049580:intron | 35.0% | |
| TATTTATTGCAGTGTGGATC+AGG | - | chr3.2:58391060-58391079 | MS.gene049580:intron | 35.0% | |
| TGATGATTCAGTAGACAAGT+TGG | - | chr3.2:58388552-58388571 | MS.gene049580:intron | 35.0% | |
| TTGTGATTATCAATACGAGG+AGG | - | chr3.2:58389134-58389153 | MS.gene049580:CDS | 35.0% | |
| ! | AAACCTAGATGCATTTTCGT+AGG | - | chr3.2:58389906-58389925 | MS.gene049580:intron | 35.0% |
| ! | AATTTTACACCGGCATTTCA+AGG | + | chr3.2:58389201-58389220 | None:intergenic | 35.0% |
| ! | ATTGTAGAGTTCTGGTGAAT+TGG | - | chr3.2:58390494-58390513 | MS.gene049580:intron | 35.0% |
| ! | ATTTTACACCGGCATTTCAA+GGG | + | chr3.2:58389200-58389219 | None:intergenic | 35.0% |
| ! | GAAATTTCACCTTTTCACAC+CGG | + | chr3.2:58390431-58390450 | None:intergenic | 35.0% |
| ! | GATGAATATGTCATTTGCCT+TGG | - | chr3.2:58390354-58390373 | MS.gene049580:intron | 35.0% |
| ! | TACTTTTCATATTTGGACGG+TGG | - | chr3.2:58389289-58389308 | MS.gene049580:intron | 35.0% |
| !! | ACTTTCTCTACTTTTGCTCT+TGG | - | chr3.2:58389575-58389594 | MS.gene049580:CDS | 35.0% |
| !! | CTTCTGAAATTGTAGAGTTC+TGG | - | chr3.2:58390486-58390505 | MS.gene049580:intron | 35.0% |
| !! | CTTTTAACTGCAGTTTCTGA+GGG | - | chr3.2:58388711-58388730 | MS.gene049580:intron | 35.0% |
| !! | TTTTAACTGCAGTTTCTGAG+GGG | - | chr3.2:58388712-58388731 | MS.gene049580:intron | 35.0% |
| AAGAAAGCCATGACATGATC+TGG | + | chr3.2:58390139-58390158 | None:intergenic | 40.0% | |
| AAGAAGAAGAAGAAGCCTGT+AGG | - | chr3.2:58388762-58388781 | MS.gene049580:intron | 40.0% | |
| AAGATCAGTTGCACCTATCA+AGG | - | chr3.2:58391083-58391102 | MS.gene049580:intron | 40.0% | |
| ACAGATTGATGTGAAGGAAG+AGG | - | chr3.2:58388222-58388241 | MS.gene049580:CDS | 40.0% | |
| AGAACCGTTTGTTCTTTCTC+CGG | - | chr3.2:58390409-58390428 | MS.gene049580:CDS | 40.0% | |
| ATATGTTGTCAGCTCACTAG+AGG | + | chr3.2:58390716-58390735 | None:intergenic | 40.0% | |
| ATCATCAAGATCTACCACTG+CGG | + | chr3.2:58388536-58388555 | None:intergenic | 40.0% | |
| CCTCAGAAACTGCAGTTAAA+AGG | + | chr3.2:58388713-58388732 | None:intergenic | 40.0% | |
| GACAGAAAATCTGTCAGGTA+TGG | - | chr3.2:58388582-58388601 | MS.gene049580:intron | 40.0% | |
| GAGAAGACAGAAAATCTGTC+AGG | - | chr3.2:58388577-58388596 | MS.gene049580:intron | 40.0% | |
| GAGAATAATCCAGAACTTGC+TGG | - | chr3.2:58389737-58389756 | MS.gene049580:intron | 40.0% | |
| GCTGACAACATATATCCTGT+AGG | - | chr3.2:58390723-58390742 | MS.gene049580:intron | 40.0% | |
| TCACCTACGAAAATGCATCT+AGG | + | chr3.2:58389912-58389931 | None:intergenic | 40.0% | |
| TCCTGACACGATACTTTCAA+AGG | - | chr3.2:58390386-58390405 | MS.gene049580:intron | 40.0% | |
| TGAAGCACAGATTGATGTGA+AGG | - | chr3.2:58388216-58388235 | MS.gene049580:CDS | 40.0% | |
| TTTGCACCAAAGAACTTCGA+AGG | - | chr3.2:58390223-58390242 | MS.gene049580:CDS | 40.0% | |
| ! | ACGTACTCATGTTACTTCTC+TGG | + | chr3.2:58390867-58390886 | None:intergenic | 40.0% |
| ! | CGTACTCATGTTACTTCTCT+GGG | + | chr3.2:58390866-58390885 | None:intergenic | 40.0% |
| ! | GGTGGGGTCTTTTCATATTT+TGG | - | chr3.2:58389367-58389386 | MS.gene049580:intron | 40.0% |
| !! | CCTTTTAACTGCAGTTTCTG+AGG | - | chr3.2:58388710-58388729 | MS.gene049580:intron | 40.0% |
| !! | CTTACTTTTGTCTTCCTACC+TGG | - | chr3.2:58390092-58390111 | MS.gene049580:intron | 40.0% |
| !! | TCCTTTGAAAGTATCGTGTC+AGG | + | chr3.2:58390390-58390409 | None:intergenic | 40.0% |
| !! | TCTCTACTTTTGCTCTTGGT+TGG | - | chr3.2:58389579-58389598 | MS.gene049580:CDS | 40.0% |
| !! | TTATAGGCTGTGTTTTGGGT+GGG | - | chr3.2:58389350-58389369 | MS.gene049580:intron | 40.0% |
| !! | TTTATAGGCTGTGTTTTGGG+TGG | - | chr3.2:58389349-58389368 | MS.gene049580:intron | 40.0% |
| CACAATCACTTCCTTCCCAA+GGG | + | chr3.2:58389119-58389138 | None:intergenic | 45.0% | |
| CACACCGGAGAAAGAACAAA+CGG | + | chr3.2:58390416-58390435 | None:intergenic | 45.0% | |
| GCAACAAAACCAGCCTTGAT+AGG | + | chr3.2:58391099-58391118 | None:intergenic | 45.0% | |
| GGGTTTGACAGTACATTAGC+TGG | - | chr3.2:58388732-58388751 | MS.gene049580:intron | 45.0% | |
| GGTACAAGTGGTTCTCTAGA+TGG | - | chr3.2:58390172-58390191 | MS.gene049580:intron | 45.0% | |
| GGTTGCAGAGATATACAGAG+AGG | + | chr3.2:58390467-58390486 | None:intergenic | 45.0% | |
| GTTCTTTCTCCGGTGTGAAA+AGG | - | chr3.2:58390419-58390438 | MS.gene049580:CDS | 45.0% | |
| TATTTGGACGGTGGTTCTTG+TGG | - | chr3.2:58389298-58389317 | MS.gene049580:intron | 45.0% | |
| TCACAATCACTTCCTTCCCA+AGG | + | chr3.2:58389120-58389139 | None:intergenic | 45.0% | |
| TCATCAAGATCTACCACTGC+GGG | + | chr3.2:58388535-58388554 | None:intergenic | 45.0% | |
| TCTAGATGGACAGCAGAGAT+TGG | - | chr3.2:58390186-58390205 | MS.gene049580:intron | 45.0% | |
| TTGTCAGCTCACTAGAGGTA+GGG | + | chr3.2:58390711-58390730 | None:intergenic | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr3.2:58390562-58390581 | MS.gene049580:intron | 45.0% |
| ! | ACAGCAGAGATTGGTTGTGA+AGG | - | chr3.2:58390195-58390214 | MS.gene049580:intron | 45.0% |
| ! | AGAGATTGGTTGTGAAGGGA+AGG | - | chr3.2:58390200-58390219 | MS.gene049580:intron | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr3.2:58390561-58390580 | MS.gene049580:intron | 45.0% |
| ! | CAGCAGAGATTGGTTGTGAA+GGG | - | chr3.2:58390196-58390215 | MS.gene049580:intron | 45.0% |
| ! | TGTCAGGACTTTTGCATCCA+AGG | + | chr3.2:58390374-58390393 | None:intergenic | 45.0% |
| !! | TATAGGCTGTGTTTTGGGTG+GGG | - | chr3.2:58389351-58389370 | MS.gene049580:intron | 45.0% |
| ATGCCTCTCCCTTGAAATGC+CGG | - | chr3.2:58389189-58389208 | MS.gene049580:CDS | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr3.2:58390563-58390582 | None:intergenic | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr3.2:58390566-58390585 | MS.gene049580:intron | 50.0% | |
| CTTGCAACCTCGTTACCCTT+GGG | - | chr3.2:58389101-58389120 | MS.gene049580:CDS | 50.0% | |
| GAAGAAAAAGAAGCCCGCAG+TGG | - | chr3.2:58388519-58388538 | MS.gene049580:intron | 50.0% | |
| GCTTTCTTGCTCGCAGAACT+GGG | - | chr3.2:58390151-58390170 | MS.gene049580:intron | 50.0% | |
| GTTGTCAGCTCACTAGAGGT+AGG | + | chr3.2:58390712-58390731 | None:intergenic | 50.0% | |
| TCAGTTGCACCTATCAAGGC+TGG | - | chr3.2:58391087-58391106 | MS.gene049580:intron | 50.0% | |
| TCCTCAGATCACGCTGAAGA+GGG | - | chr3.2:58389060-58389079 | MS.gene049580:intron | 50.0% | |
| TGCATCCTGAAAGACCAGGT+AGG | + | chr3.2:58390109-58390128 | None:intergenic | 50.0% | |
| TGTCAGCTCACTAGAGGTAG+GGG | + | chr3.2:58390710-58390729 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr3.2:58390560-58390579 | MS.gene049580:intron | 50.0% |
| ! | CCTGGTCTTTCAGGATGCAT+CGG | - | chr3.2:58390110-58390129 | MS.gene049580:intron | 50.0% |
| ! | GTCTTCCTACCTGGTCTTTC+AGG | - | chr3.2:58390101-58390120 | MS.gene049580:intron | 50.0% |
| ! | TTCTGTGCAGCTTTTGGGCA+GGG | - | chr3.2:58389697-58389716 | MS.gene049580:intron | 50.0% |
| ! | TTTCTGTGCAGCTTTTGGGC+AGG | - | chr3.2:58389696-58389715 | MS.gene049580:intron | 50.0% |
| !! | ATCCAGAACTTGCTGGAGAC+CGG | - | chr3.2:58389744-58389763 | MS.gene049580:intron | 50.0% |
| !!! | GCTGGTTTTGTTGCTCGTGT+TGG | - | chr3.2:58391105-58391124 | MS.gene049580:intron | 50.0% |
| ACACCGGCATTTCAAGGGAG+AGG | + | chr3.2:58389195-58389214 | None:intergenic | 55.0% | |
| ACCCTCTTCAGCGTGATCTG+AGG | + | chr3.2:58389064-58389083 | None:intergenic | 55.0% | |
| ACCGGCGTAGGACTGTTATG+AGG | - | chr3.2:58389762-58389781 | MS.gene049580:intron | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr3.2:58390575-58390594 | None:intergenic | 55.0% | |
| ATGTCCCTCCAGCAGTCCTA+CGG | + | chr3.2:58391131-58391150 | None:intergenic | 55.0% | |
| CAACCTCGTTACCCTTGGGA+AGG | - | chr3.2:58389105-58389124 | MS.gene049580:CDS | 55.0% | |
| CCAAGGGTAACGAGGTTGCA+AGG | + | chr3.2:58389103-58389122 | None:intergenic | 55.0% | |
| CCACCACAAGTGCTTCGTGA+GGG | - | chr3.2:58389785-58389804 | MS.gene049580:intron | 55.0% | |
| CCGATGCATCCTGAAAGACC+AGG | + | chr3.2:58390113-58390132 | None:intergenic | 55.0% | |
| CCTTGCAACCTCGTTACCCT+TGG | - | chr3.2:58389100-58389119 | MS.gene049580:CDS | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr3.2:58390568-58390587 | None:intergenic | 55.0% | |
| CTCCTCAGATCACGCTGAAG+AGG | - | chr3.2:58389059-58389078 | MS.gene049580:intron | 55.0% | |
| CTCGCAGAACTGGGTACAAG+TGG | - | chr3.2:58390160-58390179 | MS.gene049580:intron | 55.0% | |
| CTTCCTTCCCAAGGGTAACG+AGG | + | chr3.2:58389111-58389130 | None:intergenic | 55.0% | |
| GATCACGCTGAAGAGGGTGA+AGG | - | chr3.2:58389066-58389085 | MS.gene049580:intron | 55.0% | |
| GCCTCATAACAGTCCTACGC+CGG | + | chr3.2:58389766-58389785 | None:intergenic | 55.0% | |
| GGCTTTCTTGCTCGCAGAAC+TGG | - | chr3.2:58390150-58390169 | MS.gene049580:intron | 55.0% | |
| GTCAGCTCACTAGAGGTAGG+GGG | + | chr3.2:58390709-58390728 | None:intergenic | 55.0% | |
| TCGGCAGCCAGATCATGTCA+TGG | - | chr3.2:58390129-58390148 | MS.gene049580:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | + | chr3.2:58390574-58390593 | None:intergenic | 55.0% | |
| ! | TTGTTGCTCGTGTTGGCCGT+AGG | - | chr3.2:58391112-58391131 | MS.gene049580:CDS | 55.0% |
| GCCACCACAAGTGCTTCGTG+AGG | - | chr3.2:58389784-58389803 | MS.gene049580:intron | 60.0% | |
| TTGGCCGTAGGACTGCTGGA+GGG | - | chr3.2:58391124-58391143 | MS.gene049580:CDS | 60.0% | |
| ! | CCCTCACGAAGCACTTGTGG+TGG | + | chr3.2:58389788-58389807 | None:intergenic | 60.0% |
| ! | GTGCCCTCACGAAGCACTTG+TGG | + | chr3.2:58389791-58389810 | None:intergenic | 60.0% |
| !! | AACTTGCTGGAGACCGGCGT+AGG | - | chr3.2:58389750-58389769 | MS.gene049580:intron | 60.0% |
| CGCCGGTCTCCAGCAAGTTC+TGG | + | chr3.2:58389749-58389768 | None:intergenic | 65.0% | |
| GTTGGCCGTAGGACTGCTGG+AGG | - | chr3.2:58391123-58391142 | MS.gene049580:CDS | 65.0% | |
| ! | CGTGTTGGCCGTAGGACTGC+TGG | - | chr3.2:58391120-58391139 | MS.gene049580:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 58388208 | 58391152 | 58388208 | ID=MS.gene049580 |
| chr3.2 | mRNA | 58388208 | 58391152 | 58388208 | ID=MS.gene049580.t1;Parent=MS.gene049580 |
| chr3.2 | exon | 58391108 | 58391152 | 58391108 | ID=MS.gene049580.t1.exon1;Parent=MS.gene049580.t1 |
| chr3.2 | CDS | 58391108 | 58391152 | 58391108 | ID=cds.MS.gene049580.t1;Parent=MS.gene049580.t1 |
| chr3.2 | exon | 58390762 | 58390870 | 58390762 | ID=MS.gene049580.t1.exon2;Parent=MS.gene049580.t1 |
| chr3.2 | CDS | 58390762 | 58390870 | 58390762 | ID=cds.MS.gene049580.t1;Parent=MS.gene049580.t1 |
| chr3.2 | exon | 58390581 | 58390636 | 58390581 | ID=MS.gene049580.t1.exon3;Parent=MS.gene049580.t1 |
| chr3.2 | CDS | 58390581 | 58390636 | 58390581 | ID=cds.MS.gene049580.t1;Parent=MS.gene049580.t1 |
| chr3.2 | exon | 58390387 | 58390444 | 58390387 | ID=MS.gene049580.t1.exon4;Parent=MS.gene049580.t1 |
| chr3.2 | CDS | 58390387 | 58390444 | 58390387 | ID=cds.MS.gene049580.t1;Parent=MS.gene049580.t1 |
| chr3.2 | exon | 58390205 | 58390293 | 58390205 | ID=MS.gene049580.t1.exon5;Parent=MS.gene049580.t1 |
| chr3.2 | CDS | 58390205 | 58390293 | 58390205 | ID=cds.MS.gene049580.t1;Parent=MS.gene049580.t1 |
| chr3.2 | exon | 58389508 | 58389653 | 58389508 | ID=MS.gene049580.t1.exon6;Parent=MS.gene049580.t1 |
| chr3.2 | CDS | 58389508 | 58389653 | 58389508 | ID=cds.MS.gene049580.t1;Parent=MS.gene049580.t1 |
| chr3.2 | exon | 58389095 | 58389237 | 58389095 | ID=MS.gene049580.t1.exon7;Parent=MS.gene049580.t1 |
| chr3.2 | CDS | 58389095 | 58389237 | 58389095 | ID=cds.MS.gene049580.t1;Parent=MS.gene049580.t1 |
| chr3.2 | exon | 58388920 | 58389005 | 58388920 | ID=MS.gene049580.t1.exon8;Parent=MS.gene049580.t1 |
| chr3.2 | CDS | 58388920 | 58389005 | 58388920 | ID=cds.MS.gene049580.t1;Parent=MS.gene049580.t1 |
| chr3.2 | exon | 58388208 | 58388288 | 58388208 | ID=MS.gene049580.t1.exon9;Parent=MS.gene049580.t1 |
| chr3.2 | CDS | 58388208 | 58388288 | 58388208 | ID=cds.MS.gene049580.t1;Parent=MS.gene049580.t1 |
| Gene Sequence |
| Protein sequence |
