AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene28933

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28933.t1 MTR_4g075980 97.333 300 7 1 1 300 1 299 0.0 607
MS.gene28933.t1 MTR_4g134460 53.947 152 65 2 14 162 53 202 3.72e-56 187
MS.gene28933.t1 MTR_8g467490 45.771 201 89 5 4 188 1 197 2.06e-53 179
MS.gene28933.t1 MTR_6g011860 46.231 199 88 5 16 199 16 210 5.92e-53 178
MS.gene28933.t1 MTR_5g040420 43.684 190 90 3 12 188 11 196 6.40e-50 170
MS.gene28933.t1 MTR_2g093810 39.485 233 119 4 17 237 16 238 1.56e-48 164
MS.gene28933.t1 MTR_5g012080 42.289 201 104 5 17 207 9 207 1.15e-47 163
MS.gene28933.t1 MTR_2g080010 40.476 210 103 5 6 198 5 209 1.92e-47 162
MS.gene28933.t1 MTR_7g085220 43.750 192 88 4 9 180 1 192 5.77e-47 161
MS.gene28933.t1 MTR_5g090970 37.339 233 123 4 12 221 15 247 7.12e-47 160
MS.gene28933.t1 MTR_3g088110 46.386 166 77 3 9 166 1 162 1.85e-46 158
MS.gene28933.t1 MTR_5g090970 37.339 233 122 5 12 221 15 246 3.02e-45 155
MS.gene28933.t1 MTR_4g036030 36.323 223 113 6 17 213 9 228 3.30e-45 156
MS.gene28933.t1 MTR_5g041940 48.148 162 72 2 17 169 5 163 3.74e-45 154
MS.gene28933.t1 MTR_1g097300 40.306 196 107 3 15 208 19 206 4.89e-45 160
MS.gene28933.t1 MTR_5g014300 40.000 215 112 5 17 219 8 217 7.37e-45 155
MS.gene28933.t1 MTR_8g059170 49.375 160 70 3 13 164 11 167 9.77e-45 155
MS.gene28933.t1 MTR_4g081870 47.561 164 74 2 17 171 11 171 1.77e-44 152
MS.gene28933.t1 MTR_8g063550 40.639 219 105 5 16 212 7 222 1.82e-44 154
MS.gene28933.t1 MTR_2g079990 49.375 160 72 4 13 166 13 169 1.92e-44 155
MS.gene28933.t1 MTR_6g477900 44.242 165 82 3 17 174 8 169 2.08e-44 151
MS.gene28933.t1 MTR_8g063550 40.639 219 105 5 16 212 7 222 2.17e-44 156
MS.gene28933.t1 MTR_4g101680 49.007 151 68 3 17 161 9 156 2.25e-44 155
MS.gene28933.t1 MTR_8g063550 40.826 218 104 5 16 211 7 221 5.36e-44 155
MS.gene28933.t1 MTR_4g089135 42.021 188 79 4 6 164 5 191 6.59e-44 153
MS.gene28933.t1 MTR_3g435150 46.552 174 79 6 4 166 1 171 7.15e-44 152
MS.gene28933.t1 MTR_2g064090 42.690 171 84 4 17 179 8 172 7.51e-44 153
MS.gene28933.t1 MTR_3g096140 45.000 160 78 3 9 161 1 157 9.18e-44 150
MS.gene28933.t1 MTR_8g076110 46.296 162 78 4 12 167 3 161 9.58e-44 152
MS.gene28933.t1 MTR_4g035590 46.471 170 83 4 17 181 10 176 1.40e-43 152
MS.gene28933.t1 MTR_4g108760 44.000 175 83 5 4 166 1 172 1.41e-43 152
MS.gene28933.t1 MTR_3g064580 43.407 182 90 4 17 188 8 186 1.42e-43 158
MS.gene28933.t1 MTR_5g021710 45.283 159 78 3 12 164 5 160 1.49e-43 152
MS.gene28933.t1 MTR_7g100990 40.488 205 108 4 6 210 2 192 7.21e-43 150
MS.gene28933.t1 MTR_2157s0010 43.787 169 81 2 17 171 10 178 8.31e-43 148
MS.gene28933.t1 MTR_3g096140 45.000 160 78 3 9 161 1 157 1.02e-42 150
MS.gene28933.t1 MTR_8g024480 45.714 175 75 4 17 174 17 188 1.76e-42 151
MS.gene28933.t1 MTR_7g105170 43.605 172 77 6 17 171 6 174 2.62e-42 146
MS.gene28933.t1 MTR_2g062730 46.707 167 81 5 17 177 12 176 2.64e-42 149
MS.gene28933.t1 MTR_5g076850 46.154 156 74 4 17 165 8 160 2.70e-42 154
MS.gene28933.t1 MTR_1g096430 46.584 161 77 3 9 163 1 158 3.23e-42 148
MS.gene28933.t1 MTR_2g068920 38.696 230 109 6 1 204 1 224 3.77e-42 147
MS.gene28933.t1 MTR_3g116070 39.367 221 106 8 1 207 2 208 3.81e-42 149
MS.gene28933.t1 MTR_3g096920 44.304 158 76 2 17 166 9 162 4.73e-42 147
MS.gene28933.t1 MTR_6g084430 41.463 164 90 2 17 177 7 167 5.03e-42 147
MS.gene28933.t1 MTR_4g098630 43.956 182 95 3 17 191 8 189 9.95e-42 147
MS.gene28933.t1 MTR_3g109340 45.570 158 82 2 12 166 19 175 1.05e-41 147
MS.gene28933.t1 MTR_3g109340 45.283 159 82 2 12 166 19 176 1.47e-41 147
MS.gene28933.t1 MTR_6g012670 44.375 160 79 2 17 169 22 178 2.74e-41 145
MS.gene28933.t1 MTR_2g068880 42.328 189 84 5 1 164 1 189 3.61e-41 145
MS.gene28933.t1 MTR_2g079990 52.206 136 61 3 13 147 13 145 6.10e-41 146
MS.gene28933.t1 MTR_6g032770 39.320 206 109 5 7 197 9 213 2.68e-40 144
MS.gene28933.t1 MTR_1g008740 43.750 160 84 3 12 166 10 168 3.71e-40 143
MS.gene28933.t1 MTR_8g094580 44.654 159 75 4 17 166 9 163 4.25e-40 141
MS.gene28933.t1 MTR_1g008740 43.750 160 84 3 12 166 24 182 4.53e-40 143
MS.gene28933.t1 MTR_8g093580 48.366 153 69 3 16 161 7 156 4.59e-40 146
MS.gene28933.t1 MTR_2g078700 51.969 127 60 1 17 143 25 150 5.39e-40 144
MS.gene28933.t1 MTR_4g052620 39.899 198 104 5 12 196 2 197 1.38e-39 139
MS.gene28933.t1 MTR_0036s0150 46.795 156 71 5 17 164 7 158 2.65e-39 144
MS.gene28933.t1 MTR_1g090720 44.670 197 86 5 17 193 44 237 3.62e-39 143
MS.gene28933.t1 MTR_3g096920 48.062 129 63 1 17 145 9 133 4.30e-39 140
MS.gene28933.t1 MTR_1g090723 44.516 155 76 4 17 164 10 161 2.51e-38 142
MS.gene28933.t1 MTR_7g085260 43.671 158 81 3 17 166 19 176 3.19e-38 139
MS.gene28933.t1 MTR_1g090723 44.516 155 76 4 17 164 10 161 3.70e-38 142
MS.gene28933.t1 MTR_1g090723 45.513 156 74 5 17 164 10 162 4.37e-38 142
MS.gene28933.t1 MTR_7g005280 41.573 178 93 5 4 174 1 174 2.44e-37 133
MS.gene28933.t1 MTR_3g093040 37.441 211 119 5 14 216 106 311 2.84e-37 135
MS.gene28933.t1 MTR_5g069030 46.358 151 71 3 18 161 28 175 2.90e-37 140
MS.gene28933.t1 MTR_1g069805 37.895 190 103 5 17 203 12 189 4.37e-37 133
MS.gene28933.t1 MTR_3g093050 45.806 155 73 4 15 161 21 172 7.27e-37 139
MS.gene28933.t1 MTR_3g070030 45.695 151 75 3 1 147 1 148 7.49e-37 134
MS.gene28933.t1 MTR_7g011130 46.358 151 74 3 1 147 1 148 9.04e-37 134
MS.gene28933.t1 MTR_2g064470 43.373 166 78 5 4 161 1 158 9.07e-37 133
MS.gene28933.t1 MTR_3g093050 45.806 155 73 4 15 161 21 172 9.45e-37 138
MS.gene28933.t1 MTR_7g097090 42.177 147 79 3 17 160 12 155 7.67e-36 130
MS.gene28933.t1 MTR_2g086690 41.379 174 82 6 17 174 6 175 1.51e-35 129
MS.gene28933.t1 MTR_7g011120 36.893 206 119 4 9 206 1 203 2.80e-34 127
MS.gene28933.t1 MTR_2g086880 41.096 146 80 3 16 160 19 159 3.57e-34 131
MS.gene28933.t1 MTR_8g099750 49.606 127 61 2 17 143 16 139 3.98e-34 124
MS.gene28933.t1 MTR_2g086880 41.096 146 80 3 16 160 19 159 5.52e-34 130
MS.gene28933.t1 MTR_3g096140 44.203 138 67 3 31 161 2 136 2.60e-33 125
MS.gene28933.t1 MTR_3g098810 44.056 143 75 3 4 143 1 141 1.81e-30 113
MS.gene28933.t1 MTR_8g023840 43.056 144 77 4 18 158 14 155 2.32e-30 118
MS.gene28933.t1 MTR_8g023860 43.056 144 77 4 18 158 15 156 6.65e-30 117
MS.gene28933.t1 MTR_3g098810 39.429 175 90 4 4 164 1 173 8.52e-30 113
MS.gene28933.t1 MTR_8g023930 38.095 168 91 5 18 182 27 184 1.47e-27 111
MS.gene28933.t1 MTR_8g094580 46.903 113 47 4 63 166 1 109 5.16e-27 105
MS.gene28933.t1 MTR_8g023900 39.053 169 86 8 2 162 3 162 5.44e-27 110
MS.gene28933.t1 MTR_8g023900 39.456 147 84 4 18 161 196 340 2.99e-26 107
MS.gene28933.t1 MTR_3g070040 30.172 232 147 5 19 241 12 237 1.64e-24 101
MS.gene28933.t1 MTR_8g023880 39.506 162 73 8 18 161 10 164 3.84e-23 96.3
MS.gene28933.t1 MTR_4g094302 35.256 156 81 3 17 161 13 159 3.94e-23 94.4
MS.gene28933.t1 MTR_4g094302 38.583 127 69 2 17 143 13 130 3.09e-22 91.3
MS.gene28933.t1 MTR_7g070140 43.820 89 47 2 68 154 17 104 7.57e-22 89.4
MS.gene28933.t1 MTR_8g093790 35.185 162 74 8 17 173 12 147 1.19e-16 76.6
MS.gene28933.t1 MTR_7g070150 44.828 58 30 1 109 164 3 60 4.60e-13 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28933.t1 AT2G17040 60.490 286 95 7 14 297 5 274 4.00e-112 325
MS.gene28933.t1 AT2G02450 53.642 151 65 2 14 161 50 198 2.99e-57 190
MS.gene28933.t1 AT2G02450 53.642 151 65 2 14 161 50 198 3.18e-57 189
MS.gene28933.t1 AT5G39820 58.647 133 54 1 12 144 17 148 5.97e-53 176
MS.gene28933.t1 AT1G26870 44.393 214 90 6 12 209 13 213 1.28e-49 170
MS.gene28933.t1 AT1G62700 47.771 157 73 3 17 167 9 162 7.09e-48 165
MS.gene28933.t1 AT1G62700 47.771 157 73 3 17 167 9 162 7.09e-48 165
MS.gene28933.t1 AT3G10480 51.974 152 63 3 17 161 29 177 2.87e-47 164
MS.gene28933.t1 AT3G10480 52.288 153 62 4 17 161 29 178 5.21e-47 164
MS.gene28933.t1 AT4G27410 51.266 158 68 5 13 164 11 165 2.09e-46 158
MS.gene28933.t1 AT1G69490 44.693 179 86 3 10 178 3 178 1.26e-45 155
MS.gene28933.t1 AT3G10490 49.359 156 62 5 17 161 29 178 1.44e-45 154
MS.gene28933.t1 AT2G43000 49.045 157 71 3 16 166 19 172 1.54e-45 155
MS.gene28933.t1 AT1G12260 43.915 189 84 5 17 199 9 181 1.74e-45 157
MS.gene28933.t1 AT1G01720 48.701 154 66 3 17 161 9 158 2.99e-45 155
MS.gene28933.t1 AT1G34180 44.000 175 88 3 13 185 14 180 3.22e-45 159
MS.gene28933.t1 AT1G12260 43.915 189 84 5 17 199 9 181 5.18e-45 157
MS.gene28933.t1 AT3G17730 46.875 160 75 3 17 169 8 164 5.19e-45 153
MS.gene28933.t1 AT5G04410 49.697 165 72 5 17 173 11 172 9.65e-45 160
MS.gene28933.t1 AT1G77450 39.648 227 113 6 17 228 12 229 1.01e-44 152
MS.gene28933.t1 AT3G10490 49.359 156 62 5 17 161 29 178 1.32e-44 157
MS.gene28933.t1 AT1G34180 44.000 175 88 3 13 185 14 180 1.88e-44 159
MS.gene28933.t1 AT5G08790 39.904 208 106 6 13 209 4 203 2.43e-44 152
MS.gene28933.t1 AT4G17980 50.000 154 67 4 17 161 8 160 2.89e-44 152
MS.gene28933.t1 AT4G17980 50.000 154 67 4 17 161 8 160 4.45e-44 152
MS.gene28933.t1 AT1G61110 43.478 184 84 3 17 182 18 199 4.69e-44 153
MS.gene28933.t1 AT1G65910 43.548 186 90 5 17 194 8 186 6.68e-44 158
MS.gene28933.t1 AT3G04070 46.584 161 70 3 17 162 12 171 7.58e-44 153
MS.gene28933.t1 AT1G34190 44.000 175 88 3 13 185 14 180 9.40e-44 157
MS.gene28933.t1 AT5G46590 50.327 153 66 3 17 161 8 158 1.22e-43 151
MS.gene28933.t1 AT5G61430 46.626 163 76 4 12 166 12 171 1.46e-43 152
MS.gene28933.t1 AT3G03200 43.158 190 93 4 17 198 8 190 2.08e-43 155
MS.gene28933.t1 AT3G15500 47.500 160 75 3 13 166 11 167 2.95e-43 150
MS.gene28933.t1 AT5G62380 48.344 151 69 3 17 161 9 156 2.96e-43 151
MS.gene28933.t1 AT5G62380 48.344 151 69 3 17 161 9 156 2.96e-43 151
MS.gene28933.t1 AT3G15510 37.736 212 111 4 19 214 21 227 3.52e-43 152
MS.gene28933.t1 AT4G27410 46.857 175 67 6 13 164 11 182 4.16e-43 150
MS.gene28933.t1 AT1G33060 43.350 203 95 5 9 198 12 207 6.06e-43 156
MS.gene28933.t1 AT1G33060 43.350 203 95 5 9 198 12 207 6.79e-43 156
MS.gene28933.t1 AT4G36160 49.007 151 68 4 17 161 12 159 6.86e-43 151
MS.gene28933.t1 AT4G36160 49.007 151 68 4 17 161 12 159 6.86e-43 151
MS.gene28933.t1 AT5G46590 54.545 132 56 2 17 146 8 137 8.74e-43 148
MS.gene28933.t1 AT4G36160 49.007 151 68 4 17 161 16 163 9.91e-43 151
MS.gene28933.t1 AT2G18060 43.713 167 82 4 4 164 1 161 1.21e-42 150
MS.gene28933.t1 AT2G18060 43.713 167 82 4 4 164 1 161 1.21e-42 150
MS.gene28933.t1 AT3G10500 47.097 155 72 4 17 164 11 162 1.71e-42 153
MS.gene28933.t1 AT5G39610 48.101 158 71 4 12 161 16 170 3.47e-42 147
MS.gene28933.t1 AT5G63790 43.103 174 84 4 13 175 47 216 3.64e-42 147
MS.gene28933.t1 AT5G63790 43.103 174 84 4 13 175 57 226 3.89e-42 148
MS.gene28933.t1 AT1G34180 40.107 187 90 3 13 185 14 192 4.09e-42 151
MS.gene28933.t1 AT1G52890 46.250 160 77 3 13 166 11 167 5.34e-42 147
MS.gene28933.t1 AT1G33280 46.154 156 76 3 17 167 10 162 8.69e-42 146
MS.gene28933.t1 AT4G10350 43.605 172 86 3 17 180 11 179 9.46e-42 147
MS.gene28933.t1 AT5G07680 38.723 235 124 7 12 238 13 235 1.15e-41 147
MS.gene28933.t1 AT2G46770 41.799 189 86 3 1 168 2 187 1.30e-41 147
MS.gene28933.t1 AT5G07680 38.428 229 122 6 17 238 5 221 1.70e-41 146
MS.gene28933.t1 AT5G17260 45.752 153 72 3 17 161 8 157 1.80e-41 149
MS.gene28933.t1 AT1G71930 45.695 151 73 3 17 161 11 158 2.01e-41 146
MS.gene28933.t1 AT1G71930 45.695 151 73 3 17 161 11 158 2.01e-41 146
MS.gene28933.t1 AT1G34180 40.107 187 90 3 13 185 14 192 2.09e-41 151
MS.gene28933.t1 AT2G24430 43.396 159 85 2 12 166 13 170 2.27e-41 145
MS.gene28933.t1 AT2G24430 43.396 159 85 2 12 166 13 170 2.27e-41 145
MS.gene28933.t1 AT3G15170 46.203 158 77 2 12 162 17 173 2.54e-41 145
MS.gene28933.t1 AT3G04070 42.373 177 70 3 17 162 12 187 2.87e-41 146
MS.gene28933.t1 AT3G29035 52.239 134 60 2 11 143 19 149 5.85e-41 145
MS.gene28933.t1 AT3G18400 43.506 154 80 2 17 166 7 157 1.05e-40 144
MS.gene28933.t1 AT3G10480 43.011 186 62 5 17 161 29 211 1.62e-40 148
MS.gene28933.t1 AT5G18270 46.053 152 73 3 17 161 23 172 1.64e-40 144
MS.gene28933.t1 AT5G66300 44.231 156 77 3 17 165 14 166 2.19e-40 142
MS.gene28933.t1 AT5G18270 46.053 152 73 3 17 161 23 172 2.42e-40 143
MS.gene28933.t1 AT5G09330 47.368 152 70 4 17 161 8 156 2.79e-40 146
MS.gene28933.t1 AT5G09330 47.368 152 70 4 17 161 8 156 2.79e-40 146
MS.gene28933.t1 AT5G09330 47.368 152 70 4 17 161 8 156 2.79e-40 146
MS.gene28933.t1 AT5G09330 47.368 152 70 4 17 161 8 156 2.79e-40 146
MS.gene28933.t1 AT5G09330 47.368 152 70 4 17 161 8 156 2.79e-40 146
MS.gene28933.t1 AT1G76420 44.156 154 81 2 17 166 24 176 3.28e-40 143
MS.gene28933.t1 AT1G32770 44.706 170 71 5 17 167 18 183 4.37e-40 143
MS.gene28933.t1 AT5G53950 41.584 202 106 5 13 204 15 214 5.86e-40 143
MS.gene28933.t1 AT3G04060 46.053 152 73 3 17 161 22 171 1.22e-39 142
MS.gene28933.t1 AT3G61910 41.753 194 94 6 17 200 13 197 1.91e-39 141
MS.gene28933.t1 AT5G64060 46.711 152 71 4 17 161 8 156 2.20e-39 141
MS.gene28933.t1 AT1G52880 44.375 160 75 2 19 164 21 180 6.37e-39 139
MS.gene28933.t1 AT1G32510 46.386 166 76 4 17 169 8 173 6.59e-39 138
MS.gene28933.t1 AT1G79580 48.387 155 73 3 17 166 19 171 9.53e-39 140
MS.gene28933.t1 AT1G79580 48.387 155 73 3 17 166 19 171 9.53e-39 140
MS.gene28933.t1 AT1G79580 48.387 155 73 3 17 166 19 171 9.53e-39 140
MS.gene28933.t1 AT1G79580 48.387 155 73 3 17 166 19 171 9.53e-39 140
MS.gene28933.t1 AT1G79580 48.387 155 73 3 17 166 19 171 9.53e-39 140
MS.gene28933.t1 AT3G44350 40.206 194 97 7 18 198 8 195 1.10e-38 136
MS.gene28933.t1 AT5G22380 38.462 195 104 6 11 192 2 193 2.60e-38 135
MS.gene28933.t1 AT3G12910 41.379 174 82 4 12 166 18 190 4.95e-38 137
MS.gene28933.t1 AT4G35580 46.452 155 72 4 15 161 8 159 5.38e-38 140
MS.gene28933.t1 AT4G35580 46.452 155 72 4 15 161 8 159 6.32e-38 141
MS.gene28933.t1 AT4G35580 46.452 155 72 4 15 161 8 159 6.93e-38 140
MS.gene28933.t1 AT1G56010 38.500 200 111 5 17 207 21 217 9.37e-38 136
MS.gene28933.t1 AT5G24590 43.784 185 90 5 15 191 12 190 3.14e-37 137
MS.gene28933.t1 AT3G49530 42.222 180 93 5 15 186 12 188 5.98e-37 136
MS.gene28933.t1 AT5G04395 45.395 152 70 1 8 146 21 172 9.39e-37 130
MS.gene28933.t1 AT1G54330 46.309 149 73 3 17 161 8 153 9.95e-37 133
MS.gene28933.t1 AT5G13180 47.651 149 70 3 17 161 16 160 1.28e-36 131
MS.gene28933.t1 AT3G49530 42.222 180 93 5 15 186 12 188 1.49e-36 136
MS.gene28933.t1 AT3G12977 42.857 154 79 3 17 164 20 170 2.16e-36 132
MS.gene28933.t1 AT5G22290 38.220 191 108 4 15 199 21 207 4.40e-36 132
MS.gene28933.t1 AT2G33480 46.358 151 72 3 17 164 17 161 8.06e-36 130
MS.gene28933.t1 AT4G28530 42.169 166 72 5 17 162 12 173 8.74e-36 132
MS.gene28933.t1 AT2G33480 45.752 153 72 4 17 164 17 163 6.02e-35 127
MS.gene28933.t1 AT1G32870 49.045 157 66 4 17 164 12 163 6.29e-34 130
MS.gene28933.t1 AT1G32870 49.045 157 66 4 17 164 12 163 6.38e-34 130
MS.gene28933.t1 AT1G32870 49.045 157 66 4 17 164 48 199 1.16e-33 129
MS.gene28933.t1 AT3G44350 44.604 139 66 4 18 149 8 142 3.99e-33 119
MS.gene28933.t1 AT4G01550 44.444 153 76 4 16 162 5 154 5.41e-33 126
MS.gene28933.t1 AT2G27300 39.597 149 82 4 16 162 15 157 2.91e-32 122
MS.gene28933.t1 AT3G44290 40.816 147 81 3 15 160 14 155 1.13e-31 118
MS.gene28933.t1 AT3G44290 40.816 147 81 3 15 160 14 155 4.71e-31 119
MS.gene28933.t1 AT4G01520 38.961 154 90 3 18 167 7 160 7.15e-30 115
MS.gene28933.t1 AT1G56010 51.376 109 42 4 63 163 1 106 1.70e-29 113
MS.gene28933.t1 AT5G61430 48.649 111 47 3 63 166 1 108 3.26e-29 112
MS.gene28933.t1 AT4G01540 39.103 156 91 3 16 167 5 160 1.58e-28 114
MS.gene28933.t1 AT4G01540 39.103 156 91 3 16 167 5 160 2.45e-28 112
MS.gene28933.t1 AT4G01540 39.103 156 91 3 16 167 5 160 3.04e-28 113
MS.gene28933.t1 AT4G01540 39.103 156 91 3 16 167 5 160 3.28e-28 113
MS.gene28933.t1 AT4G10350 44.068 118 58 2 68 180 18 132 1.16e-27 109
MS.gene28933.t1 AT3G12977 48.077 104 45 3 64 161 14 114 1.23e-27 107
MS.gene28933.t1 AT5G64530 35.088 171 88 4 17 177 5 162 1.65e-22 92.8
MS.gene28933.t1 AT2G33480 45.098 102 48 3 68 164 8 106 2.18e-22 93.2
MS.gene28933.t1 AT5G64530 39.535 129 65 3 17 145 5 120 2.73e-22 91.3
MS.gene28933.t1 AT1G02250 38.000 150 85 4 18 162 6 152 1.02e-21 94.0
MS.gene28933.t1 AT1G02230 33.533 167 99 5 18 177 6 167 1.91e-20 90.5
MS.gene28933.t1 AT3G04420 31.138 167 108 3 18 180 6 169 4.40e-19 85.9
MS.gene28933.t1 AT1G01010 34.706 170 92 7 18 174 6 169 9.86e-19 86.3
MS.gene28933.t1 AT3G04420 31.138 167 108 3 18 180 6 169 1.26e-18 85.1
MS.gene28933.t1 AT2G43000 44.792 96 44 3 77 166 2 94 3.50e-18 81.3
MS.gene28933.t1 AT4G28530 38.938 113 48 3 17 112 12 120 1.36e-17 82.0
MS.gene28933.t1 AT2G18060 47.297 74 33 2 94 164 3 73 9.24e-17 79.0
MS.gene28933.t1 AT3G04430 41.739 115 50 6 21 127 6 111 2.08e-16 76.6
MS.gene28933.t1 AT3G56530 34.395 157 93 5 10 159 46 199 6.14e-16 77.4
MS.gene28933.t1 AT1G02220 33.103 145 87 4 18 158 6 144 1.76e-15 76.6
MS.gene28933.t1 AT3G10490 46.988 83 29 4 88 161 2 78 2.19e-15 75.9
MS.gene28933.t1 AT3G10490 46.988 83 29 4 88 161 2 78 2.19e-15 75.9
MS.gene28933.t1 AT3G55210 31.928 166 95 6 17 167 13 175 2.47e-15 75.1
MS.gene28933.t1 AT5G14000 32.812 128 79 3 18 143 18 140 5.58e-15 71.6
MS.gene28933.t1 AT5G22290 36.036 111 62 3 94 199 2 108 5.83e-15 73.2
MS.gene28933.t1 AT5G14000 28.902 173 111 6 14 179 13 180 9.98e-15 72.0
MS.gene28933.t1 AT5G50820 31.217 189 105 7 17 197 19 190 2.53e-13 67.8

Find 76 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGACCCAAGATACATTT+TGG 0.198299 4.4:-34448284 MS.gene28933:CDS
TCATGTTCAGATTCTTTCTT+AGG 0.221095 4.4:+34448447 None:intergenic
TGATTTCTATCTTAAGAATA+TGG 0.228122 4.4:-34450156 MS.gene28933:CDS
GCACAACTGAGAAAGGTTTC+TGG 0.285017 4.4:-34449842 MS.gene28933:CDS
AATGACTTGTTGAAACAATA+AGG 0.289381 4.4:+34448470 None:intergenic
GTCTTGTTGTGTGTAGTTAA+AGG 0.331878 4.4:+34448509 None:intergenic
CCGGAAAATCGTGACGTTAT+CGG 0.347516 4.4:-34449802 MS.gene28933:CDS
ACTGAACAAATTACACTTCC+AGG 0.347917 4.4:-34450212 MS.gene28933:CDS
ATAGTCCTTGGCTACAAAAC+TGG 0.348323 4.4:-34448251 MS.gene28933:CDS
TCGGATCCGAAACGCATAAT+CGG 0.363961 4.4:-34449783 MS.gene28933:CDS
AATTGTGAAAGATAATAAAA+AGG 0.367531 4.4:-34448379 MS.gene28933:CDS
CTCAACCCGATTATGCGTTT+CGG 0.375306 4.4:+34449777 None:intergenic
TATATAGGTTTGTCAAAGGT+TGG 0.383447 4.4:-34449930 MS.gene28933:intron
GAAGAAGGTGGGGAAGATGT+AGG 0.386986 4.4:+34448549 None:intergenic
AAGAAGGTGGGGAAGATGTA+GGG 0.391402 4.4:+34448550 None:intergenic
AAACTTCGTTATGATGTCAT+TGG 0.391717 4.4:-34450122 MS.gene28933:CDS
ATATAGGTTTGTCAAAGGTT+GGG 0.396654 4.4:-34449929 MS.gene28933:intron
ACATCTTTGCAATTGCCCTT+AGG 0.396815 4.4:-34448348 MS.gene28933:CDS
CATCTTTGCAATTGCCCTTA+GGG 0.400405 4.4:-34448347 MS.gene28933:CDS
GCTATAGGTAACTGAAGTTC+AGG 0.401665 4.4:+34448312 None:intergenic
GGGCTCAGCTTAATAGTCCT+TGG 0.407233 4.4:-34448263 MS.gene28933:CDS
CAAGAGGAACCAAGACTGAT+TGG 0.409549 4.4:-34449722 MS.gene28933:CDS
CCTTTCTCAGTTGTGCGATT+AGG 0.410304 4.4:+34449849 None:intergenic
CAATCAGTCTTGGTTCCTCT+TGG 0.413050 4.4:+34449723 None:intergenic
GCTGAGCCCAAAATGTATCT+TGG 0.418008 4.4:+34448277 None:intergenic
TATCTTAAGAATATGGTTGT+TGG 0.419156 4.4:-34450149 MS.gene28933:CDS
CGGATCCGAAACGCATAATC+GGG 0.449323 4.4:-34449782 MS.gene28933:CDS
TATAGGTTTGTCAAAGGTTG+GGG 0.462857 4.4:-34449928 MS.gene28933:intron
CTGAGCCCAAAATGTATCTT+GGG 0.464405 4.4:+34448278 None:intergenic
AGTTACCTATAGCTGCAGAT+TGG 0.469574 4.4:-34448302 MS.gene28933:CDS
TTAGGCAAGGGGCTATTGTC+AGG 0.479868 4.4:+34449678 None:intergenic
CCTAATCGCACAACTGAGAA+AGG 0.487326 4.4:-34449849 MS.gene28933:CDS
ATTCATAACCCAATCAGTCT+TGG 0.489277 4.4:+34449713 None:intergenic
AGGTACATTGTCCTTCCCTA+AGG 0.489812 4.4:+34448332 None:intergenic
ATGACTTGTTGAAACAATAA+GGG 0.490222 4.4:+34448471 None:intergenic
GTGGGGTGAAATCTGAATCC+TGG 0.490756 4.4:+34450194 None:intergenic
TTCCCCACCTTCTTCCTCTA+CGG 0.492417 4.4:-34448541 MS.gene28933:CDS
AGAAGAAGAGATGAAACAAA+TGG 0.498288 4.4:-34448580 MS.gene28933:CDS
TGGGTCCAATCTGCAGCTAT+AGG 0.498639 4.4:+34448297 None:intergenic
TCAAGGAGTTCTTCTTCTGT+GGG 0.500082 4.4:+34450176 None:intergenic
TTGATTATATATGACATCAA+TGG 0.501603 4.4:-34450252 None:intergenic
AAGAGGAACCAAGACTGATT+GGG 0.506930 4.4:-34449721 MS.gene28933:CDS
TATTCTTAAGATAGAAATCA+AGG 0.507383 4.4:+34450159 None:intergenic
CAAAGGTTGGGGAAAGAGAA+TGG 0.507736 4.4:-34449917 MS.gene28933:CDS
ATCAAGGAGTTCTTCTTCTG+TGG 0.511582 4.4:+34450175 None:intergenic
AGGGGCTATTGTCAGGTAAA+CGG 0.514663 4.4:+34449685 None:intergenic
CATGATCCTTGTGACTTGCC+AGG 0.515932 4.4:-34450080 MS.gene28933:intron
AGAAGGTGGGGAAGATGTAG+GGG 0.520080 4.4:+34448551 None:intergenic
TGACAATAGCCCCTTGCCTA+AGG 0.525791 4.4:-34449676 MS.gene28933:intron
ATTATGCAAGATATATAGAA+AGG 0.533180 4.4:-34448640 MS.gene28933:CDS
TTTCTGGAAAGCCACCGGTT+CGG 0.534834 4.4:-34449826 MS.gene28933:CDS
CTGGCAAGTCACAAGGATCA+TGG 0.537753 4.4:+34450081 None:intergenic
AGAAGAGATGAAACAAATGG+TGG 0.549954 4.4:-34448577 MS.gene28933:CDS
TTTGCAATTGCCCTTAGGGA+AGG 0.552390 4.4:-34448343 MS.gene28933:CDS
GGAAAGCCACCGGTTCGGAC+CGG 0.552889 4.4:-34449821 MS.gene28933:CDS
ATATACAATACCTTAGGCAA+GGG 0.556768 4.4:+34449666 None:intergenic
ATGATATATAGGTTTGTCAA+AGG 0.562913 4.4:-34449934 MS.gene28933:intron
TATATACAATACCTTAGGCA+AGG 0.566468 4.4:+34449665 None:intergenic
AAAGGTTTCTGGAAAGCCAC+CGG 0.569247 4.4:-34449831 MS.gene28933:CDS
GGTACATTGTCCTTCCCTAA+GGG 0.570401 4.4:+34448333 None:intergenic
CGAAACGCATAATCGGGTTG+AGG 0.590544 4.4:-34449776 MS.gene28933:CDS
AATAATTAAAACTGAAGACA+TGG 0.594981 4.4:-34448424 MS.gene28933:CDS
GTCCGTAGAGGAAGAAGGTG+GGG 0.607988 4.4:+34448539 None:intergenic
GTGTCCGTAGAGGAAGAAGG+TGG 0.609803 4.4:+34448537 None:intergenic
ATAAGGGCATGGACACGTGT+TGG 0.615885 4.4:+34448487 None:intergenic
GAAGAGATGAAACAAATGGT+GGG 0.618089 4.4:-34448576 MS.gene28933:CDS
AATCGGGTTGAGGAAGACGT+TGG 0.622308 4.4:-34449766 MS.gene28933:CDS
ATTATATATGACATCAATGG+AGG 0.632195 4.4:-34450249 None:intergenic
ATTGTGTCCGTAGAGGAAGA+AGG 0.636049 4.4:+34448534 None:intergenic
AAAGGAGATTGTGTCCGTAG+AGG 0.637647 4.4:+34448527 None:intergenic
TGTCCGTAGAGGAAGAAGGT+GGG 0.638792 4.4:+34448538 None:intergenic
TTGTTGAAACAATAAGGGCA+TGG 0.638825 4.4:+34448476 None:intergenic
ACTATACCTGGCAAGTCACA+AGG 0.654035 4.4:+34450074 None:intergenic
TATACAATACCTTAGGCAAG+GGG 0.661978 4.4:+34449667 None:intergenic
CAAGGAGTTCTTCTTCTGTG+GGG 0.678001 4.4:+34450177 None:intergenic
TATGAGGGAAGAGCTCCAAG+AGG 0.740807 4.4:-34449738 MS.gene28933:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTATATATAATTGAATGA+AGG + chr4.4:34449386-34449405 None:intergenic 15.0%
!! AATTGTGAAAGATAATAAAA+AGG - chr4.4:34450084-34450103 MS.gene28933:CDS 15.0%
!! CATTCAATGTAAAAAAAAAA+GGG - chr4.4:34449036-34449055 MS.gene28933:intron 15.0%
!! TCATTCAATGTAAAAAAAAA+AGG - chr4.4:34449035-34449054 MS.gene28933:intron 15.0%
!! TTCAAATTAAATTAATGTCT+AGG + chr4.4:34448460-34448479 None:intergenic 15.0%
!!! TTTTTTTTTACATTGAATGA+AGG + chr4.4:34449035-34449054 None:intergenic 15.0%
!! AAAAATACTAATATATGCCA+TGG - chr4.4:34449778-34449797 MS.gene28933:CDS 20.0%
!! AATAATTAAAACTGAAGACA+TGG - chr4.4:34450039-34450058 MS.gene28933:intron 20.0%
!! AGATATATATACAATACCTT+AGG + chr4.4:34448806-34448825 None:intergenic 20.0%
!! ATTATGCAAGATATATAGAA+AGG - chr4.4:34449823-34449842 MS.gene28933:CDS 20.0%
!! ATTCATAGTTAAAGCTTATA+TGG + chr4.4:34448921-34448940 None:intergenic 20.0%
!! CAAACATAAACTAATGAAAT+TGG - chr4.4:34449724-34449743 MS.gene28933:CDS 20.0%
!! GATATATATCAAAATCACAT+GGG + chr4.4:34448971-34448990 None:intergenic 20.0%
!! TATTCTTAAGATAGAAATCA+AGG + chr4.4:34448307-34448326 None:intergenic 20.0%
!! TGATATATATCAAAATCACA+TGG + chr4.4:34448972-34448991 None:intergenic 20.0%
!! TGATTTCTATCTTAAGAATA+TGG - chr4.4:34448307-34448326 MS.gene28933:CDS 20.0%
!!! TGTGATTTTGATATATATCA+CGG - chr4.4:34448972-34448991 MS.gene28933:intron 20.0%
!!! TGTTTATTTTAGTCACAAAT+TGG - chr4.4:34449513-34449532 MS.gene28933:intron 20.0%
!!! TTTTTACTTTTTTCACAAGA+GGG - chr4.4:34449486-34449505 MS.gene28933:intron 20.0%
!!! TTTTTTACTTTTTTCACAAG+AGG - chr4.4:34449485-34449504 MS.gene28933:intron 20.0%
! AAAAAGATTCCCATGTTATT+TGG + chr4.4:34449470-34449489 None:intergenic 25.0%
! AAAGATAATAAAAAGGCTTG+TGG - chr4.4:34450091-34450110 MS.gene28933:CDS 25.0%
! AATTAGTTGCAAGTCTTAAT+TGG + chr4.4:34449678-34449697 None:intergenic 25.0%
! ACCAAAAATATACTACAGAA+TGG + chr4.4:34448868-34448887 None:intergenic 25.0%
! AGTTAAAGCTTATATGGTTA+TGG + chr4.4:34448915-34448934 None:intergenic 25.0%
! ATGATATATAGGTTTGTCAA+AGG - chr4.4:34448529-34448548 MS.gene28933:CDS 25.0%
! CAATGTAAAAAAAAAAGGGA+AGG - chr4.4:34449040-34449059 MS.gene28933:intron 25.0%
! CCAAAAATATACTACAGAAT+GGG + chr4.4:34448867-34448886 None:intergenic 25.0%
! GTAACACATAATATGATACT+AGG + chr4.4:34448430-34448449 None:intergenic 25.0%
! TATCTTAAGAATATGGTTGT+TGG - chr4.4:34448314-34448333 MS.gene28933:CDS 25.0%
!! AAAAGATTCCCATGTTATTT+GGG + chr4.4:34449469-34449488 None:intergenic 25.0%
!! GAATGTTTTGCATGATATAT+AGG - chr4.4:34448518-34448537 MS.gene28933:CDS 25.0%
!!! AATGACTTGTTGAAACAATA+AGG + chr4.4:34449996-34450015 None:intergenic 25.0%
!!! ATGACTTGTTGAAACAATAA+GGG + chr4.4:34449995-34450014 None:intergenic 25.0%
!!! GTGATTTTGATATATATCAC+GGG - chr4.4:34448973-34448992 MS.gene28933:intron 25.0%
AAACAAACATGACACTTCAT+AGG - chr4.4:34449344-34449363 MS.gene28933:intron 30.0%
AAACTTCGTTATGATGTCAT+TGG - chr4.4:34448341-34448360 MS.gene28933:CDS 30.0%
AAAGAAACGAAAGGTTCATA+AGG + chr4.4:34449643-34449662 None:intergenic 30.0%
AAAGGGAAGGAGAAAATTAT+TGG - chr4.4:34449053-34449072 MS.gene28933:intron 30.0%
AAATTTCCATGAAGATAGCT+AGG - chr4.4:34449581-34449600 MS.gene28933:intron 30.0%
AAGAAACGAAAGGTTCATAA+GGG + chr4.4:34449642-34449661 None:intergenic 30.0%
AGAAGAAGAGATGAAACAAA+TGG - chr4.4:34449883-34449902 MS.gene28933:CDS 30.0%
ATATACAATACCTTAGGCAA+GGG + chr4.4:34448800-34448819 None:intergenic 30.0%
ATATAGGTTTGTCAAAGGTT+GGG - chr4.4:34448534-34448553 MS.gene28933:CDS 30.0%
TATATACAATACCTTAGGCA+AGG + chr4.4:34448801-34448820 None:intergenic 30.0%
TATATAGGTTTGTCAAAGGT+TGG - chr4.4:34448533-34448552 MS.gene28933:CDS 30.0%
TCAATTAGTCATCGTATGAT+AGG + chr4.4:34448892-34448911 None:intergenic 30.0%
TCATGTTCAGATTCTTTCTT+AGG + chr4.4:34450019-34450038 None:intergenic 30.0%
TTCATCATGAAAGAAACGAA+AGG + chr4.4:34449652-34449671 None:intergenic 30.0%
! ATGATATGCTTGCTTTGTTA+TGG - chr4.4:34449434-34449453 MS.gene28933:intron 30.0%
! CCCATTCTGTAGTATATTTT+TGG - chr4.4:34448864-34448883 MS.gene28933:intron 30.0%
! TTCTTTCTGTACAAGTATTG+TGG - chr4.4:34449614-34449633 MS.gene28933:intron 30.0%
!!! GAAGTGTCATGTTTGTTTTT+TGG + chr4.4:34449342-34449361 None:intergenic 30.0%
ACTGAACAAATTACACTTCC+AGG - chr4.4:34448251-34448270 MS.gene28933:CDS 35.0%
AGAAACGAAAGGTTCATAAG+GGG + chr4.4:34449641-34449660 None:intergenic 35.0%
AGAAGAGATGAAACAAATGG+TGG - chr4.4:34449886-34449905 MS.gene28933:CDS 35.0%
ATTCATAACCCAATCAGTCT+TGG + chr4.4:34448753-34448772 None:intergenic 35.0%
CAGATTCTCCCAAATAACAT+GGG - chr4.4:34449458-34449477 MS.gene28933:intron 35.0%
GAAGAGATGAAACAAATGGT+GGG - chr4.4:34449887-34449906 MS.gene28933:CDS 35.0%
GGAAAATGATCCTAGTAATC+TGG + chr4.4:34449284-34449303 None:intergenic 35.0%
TAACGTGCATATCTCTTACA+TGG - chr4.4:34449553-34449572 MS.gene28933:intron 35.0%
TATACAATACCTTAGGCAAG+GGG + chr4.4:34448799-34448818 None:intergenic 35.0%
TATAGGTTTGTCAAAGGTTG+GGG - chr4.4:34448535-34448554 MS.gene28933:CDS 35.0%
TGATTGATTAGCACTATACC+TGG + chr4.4:34448404-34448423 None:intergenic 35.0%
TGCATATCTCTTACATGGAA+GGG - chr4.4:34449558-34449577 MS.gene28933:intron 35.0%
TTGTTGAAACAATAAGGGCA+TGG + chr4.4:34449990-34450009 None:intergenic 35.0%
TTTCACTTGAAATCGAACTC+AGG + chr4.4:34449221-34449240 None:intergenic 35.0%
! ATTGGACCCAAGATACATTT+TGG - chr4.4:34450179-34450198 MS.gene28933:CDS 35.0%
! GTCTTGTTGTGTGTAGTTAA+AGG + chr4.4:34449957-34449976 None:intergenic 35.0%
! TTGGACCCAAGATACATTTT+GGG - chr4.4:34450180-34450199 MS.gene28933:CDS 35.0%
!!! AAGACGTTGGTTTTCTATGA+GGG - chr4.4:34448710-34448729 MS.gene28933:intron 35.0%
!!! AATGGTATTTTTTCGTGCCA+AGG - chr4.4:34448564-34448583 MS.gene28933:CDS 35.0%
!!! ATGGTATTTTTTCGTGCCAA+GGG - chr4.4:34448565-34448584 MS.gene28933:CDS 35.0%
!!! GTTTTTTGGTTTTAACCCTC+TGG + chr4.4:34449328-34449347 None:intergenic 35.0%
AAGAGGAACCAAGACTGATT+GGG - chr4.4:34448742-34448761 MS.gene28933:intron 40.0%
ACATCTTTGCAATTGCCCTT+AGG - chr4.4:34450115-34450134 MS.gene28933:CDS 40.0%
ACCAAGTGATTGAACTCAAG+TGG - chr4.4:34449158-34449177 MS.gene28933:intron 40.0%
ACCACTTGAGTTCAATCACT+TGG + chr4.4:34449162-34449181 None:intergenic 40.0%
AGGGACAAAAAACATGGTAG+TGG - chr4.4:34448584-34448603 MS.gene28933:CDS 40.0%
AGTTACCTATAGCTGCAGAT+TGG - chr4.4:34450161-34450180 MS.gene28933:CDS 40.0%
ATAGTCCTTGGCTACAAAAC+TGG - chr4.4:34450212-34450231 MS.gene28933:CDS 40.0%
ATCAAGGAGTTCTTCTTCTG+TGG + chr4.4:34448291-34448310 None:intergenic 40.0%
CATCTTTGCAATTGCCCTTA+GGG - chr4.4:34450116-34450135 MS.gene28933:CDS 40.0%
CCAGATTCTCCCAAATAACA+TGG - chr4.4:34449457-34449476 MS.gene28933:intron 40.0%
CTACCAAACTCCAGATTACT+AGG - chr4.4:34449271-34449290 MS.gene28933:intron 40.0%
CTCGAACAATTCGTTCTATG+AGG + chr4.4:34449194-34449213 None:intergenic 40.0%
CTGAGCCCAAAATGTATCTT+GGG + chr4.4:34450188-34450207 None:intergenic 40.0%
GCTATAGGTAACTGAAGTTC+AGG + chr4.4:34450154-34450173 None:intergenic 40.0%
GTGCATATCTCTTACATGGA+AGG - chr4.4:34449557-34449576 MS.gene28933:intron 40.0%
TCAAGGAGTTCTTCTTCTGT+GGG + chr4.4:34448290-34448309 None:intergenic 40.0%
TCACTACCTAGCTATCTTCA+TGG + chr4.4:34449590-34449609 None:intergenic 40.0%
! CCATGTTATTTGGGAGAATC+TGG + chr4.4:34449460-34449479 None:intergenic 40.0%
! GATCCTAGTAATCTGGAGTT+TGG + chr4.4:34449277-34449296 None:intergenic 40.0%
! TACTAGGATCATTTTCCCCT+AGG - chr4.4:34449287-34449306 MS.gene28933:intron 40.0%
!! AAAAACATGGTAGTGGAGGA+AGG - chr4.4:34448591-34448610 MS.gene28933:CDS 40.0%
!! AGTCACAAATTGGACTAGCT+AGG - chr4.4:34449523-34449542 MS.gene28933:intron 40.0%
!! GACAAAAAACATGGTAGTGG+AGG - chr4.4:34448587-34448606 MS.gene28933:CDS 40.0%
!!! CTACCATGTTTTTTGTCCCT+TGG + chr4.4:34448584-34448603 None:intergenic 40.0%
!!! GAAGACGTTGGTTTTCTATG+AGG - chr4.4:34448709-34448728 MS.gene28933:intron 40.0%
AAAGGAGATTGTGTCCGTAG+AGG + chr4.4:34449939-34449958 None:intergenic 45.0%
AACCCTCTGGATTACTAGTC+CGG + chr4.4:34449315-34449334 None:intergenic 45.0%
AAGAAGGTGGGGAAGATGTA+GGG + chr4.4:34449916-34449935 None:intergenic 45.0%
ACTATACCTGGCAAGTCACA+AGG + chr4.4:34448392-34448411 None:intergenic 45.0%
AGGGGCTATTGTCAGGTAAA+CGG + chr4.4:34448781-34448800 None:intergenic 45.0%
AGGTACATTGTCCTTCCCTA+AGG + chr4.4:34450134-34450153 None:intergenic 45.0%
ATTACTAGTCCGGTTCCTAG+GGG + chr4.4:34449305-34449324 None:intergenic 45.0%
ATTGTGTCCGTAGAGGAAGA+AGG + chr4.4:34449932-34449951 None:intergenic 45.0%
CAAAGGTTGGGGAAAGAGAA+TGG - chr4.4:34448546-34448565 MS.gene28933:CDS 45.0%
CAAGAGGAACCAAGACTGAT+TGG - chr4.4:34448741-34448760 MS.gene28933:intron 45.0%
CAAGGAGTTCTTCTTCTGTG+GGG + chr4.4:34448289-34448308 None:intergenic 45.0%
CAATCAGTCTTGGTTCCTCT+TGG + chr4.4:34448743-34448762 None:intergenic 45.0%
CCGGAAAATCGTGACGTTAT+CGG - chr4.4:34448661-34448680 MS.gene28933:intron 45.0%
CCTAATCGCACAACTGAGAA+AGG - chr4.4:34448614-34448633 MS.gene28933:CDS 45.0%
CCTTTCTCAGTTGTGCGATT+AGG + chr4.4:34448617-34448636 None:intergenic 45.0%
CTCAACCCGATTATGCGTTT+CGG + chr4.4:34448689-34448708 None:intergenic 45.0%
GATTACTAGTCCGGTTCCTA+GGG + chr4.4:34449306-34449325 None:intergenic 45.0%
GCACAACTGAGAAAGGTTTC+TGG - chr4.4:34448621-34448640 MS.gene28933:CDS 45.0%
GCTGAGCCCAAAATGTATCT+TGG + chr4.4:34450189-34450208 None:intergenic 45.0%
GGTACATTGTCCTTCCCTAA+GGG + chr4.4:34450133-34450152 None:intergenic 45.0%
GTGCCAAGGGACAAAAAACA+TGG - chr4.4:34448578-34448597 MS.gene28933:CDS 45.0%
TCGGATCCGAAACGCATAAT+CGG - chr4.4:34448680-34448699 MS.gene28933:intron 45.0%
TTTGCAATTGCCCTTAGGGA+AGG - chr4.4:34450120-34450139 MS.gene28933:CDS 45.0%
! AAAGGTTTCTGGAAAGCCAC+CGG - chr4.4:34448632-34448651 MS.gene28933:CDS 45.0%
! CCGATAACGTCACGATTTTC+CGG + chr4.4:34448664-34448683 None:intergenic 45.0%
! GATCATTTTCCCCTAGGAAC+CGG - chr4.4:34449293-34449312 MS.gene28933:intron 45.0%
!! AACCGGACTAGTAATCCAGA+GGG - chr4.4:34449310-34449329 MS.gene28933:intron 45.0%
AGAAGGTGGGGAAGATGTAG+GGG + chr4.4:34449915-34449934 None:intergenic 50.0%
CGGATCCGAAACGCATAATC+GGG - chr4.4:34448681-34448700 MS.gene28933:intron 50.0%
CTGGCAAGTCACAAGGATCA+TGG + chr4.4:34448385-34448404 None:intergenic 50.0%
GAAGAAGGTGGGGAAGATGT+AGG + chr4.4:34449917-34449936 None:intergenic 50.0%
GGATTACTAGTCCGGTTCCT+AGG + chr4.4:34449307-34449326 None:intergenic 50.0%
GGGCTCAGCTTAATAGTCCT+TGG - chr4.4:34450200-34450219 MS.gene28933:CDS 50.0%
GTCCTGTCACATACGTACCA+TGG + chr4.4:34449798-34449817 None:intergenic 50.0%
GTGGGGTGAAATCTGAATCC+TGG + chr4.4:34448272-34448291 None:intergenic 50.0%
TATGAGGGAAGAGCTCCAAG+AGG - chr4.4:34448725-34448744 MS.gene28933:intron 50.0%
TGACAATAGCCCCTTGCCTA+AGG - chr4.4:34448787-34448806 MS.gene28933:intron 50.0%
TGCCATGGTACGTATGTGAC+AGG - chr4.4:34449793-34449812 MS.gene28933:CDS 50.0%
TGGGTCCAATCTGCAGCTAT+AGG + chr4.4:34450169-34450188 None:intergenic 50.0%
TGTCCGTAGAGGAAGAAGGT+GGG + chr4.4:34449928-34449947 None:intergenic 50.0%
TTAGGCAAGGGGCTATTGTC+AGG + chr4.4:34448788-34448807 None:intergenic 50.0%
TTCCCCACCTTCTTCCTCTA+CGG - chr4.4:34449922-34449941 MS.gene28933:CDS 50.0%
! ATAAGGGCATGGACACGTGT+TGG + chr4.4:34449979-34449998 None:intergenic 50.0%
! CATGATCCTTGTGACTTGCC+AGG - chr4.4:34448383-34448402 MS.gene28933:CDS 50.0%
! CGAAACGCATAATCGGGTTG+AGG - chr4.4:34448687-34448706 MS.gene28933:intron 50.0%
! TTTCTGGAAAGCCACCGGTT+CGG - chr4.4:34448637-34448656 MS.gene28933:CDS 50.0%
!! AATCGGGTTGAGGAAGACGT+TGG - chr4.4:34448697-34448716 MS.gene28933:intron 50.0%
!! GAACCGGACTAGTAATCCAG+AGG - chr4.4:34449309-34449328 MS.gene28933:intron 50.0%
!! GCACTCCAGTTTTGTAGCCA+AGG + chr4.4:34450220-34450239 None:intergenic 50.0%
GTCCGTAGAGGAAGAAGGTG+GGG + chr4.4:34449927-34449946 None:intergenic 55.0%
GTGTCCGTAGAGGAAGAAGG+TGG + chr4.4:34449929-34449948 None:intergenic 55.0%
! CACGATTTTCCGGTCCGAAC+CGG + chr4.4:34448654-34448673 None:intergenic 55.0%
! GATTTTCCGGTCCGAACCGG+TGG + chr4.4:34448651-34448670 None:intergenic 60.0%
!! GGAAAGCCACCGGTTCGGAC+CGG - chr4.4:34448642-34448661 MS.gene28933:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 34448221 34450264 34448221 ID=MS.gene28933
chr4.4 mRNA 34448221 34450264 34448221 ID=MS.gene28933.t1;Parent=MS.gene28933
chr4.4 exon 34450081 34450264 34450081 ID=MS.gene28933.t1.exon1;Parent=MS.gene28933.t1
chr4.4 CDS 34450081 34450264 34450081 ID=cds.MS.gene28933.t1;Parent=MS.gene28933.t1
chr4.4 exon 34449677 34449945 34449677 ID=MS.gene28933.t1.exon2;Parent=MS.gene28933.t1
chr4.4 CDS 34449677 34449945 34449677 ID=cds.MS.gene28933.t1;Parent=MS.gene28933.t1
chr4.4 exon 34448221 34448670 34448221 ID=MS.gene28933.t1.exon3;Parent=MS.gene28933.t1
chr4.4 CDS 34448221 34448670 34448221 ID=cds.MS.gene28933.t1;Parent=MS.gene28933.t1
Gene Sequence

>MS.gene28933

ATGACATCAATGGAGGACATCAACATGTGTACTGAACAAATTACACTTCCAGGATTCAGATTTCACCCCACAGAAGAAGAACTCCTTGATTTCTATCTTAAGAATATGGTTGTTGGCAAAAAACTTCGTTATGATGTCATTGGTTTTCTAAATATCTATCACCATGATCCTTGTGACTTGCCAGGTATAGTGCTAATCAATCAATTCCTAGTATCATATTATGTGTTACATATTTTCCTAGACATTAATTTAATTTGAAATTATAGTGACTATTTTGATATATATTAATAAAATTATGAATGTTTTGCATGATATATAGGTTTGTCAAAGGTTGGGGAAAGAGAATGGTATTTTTTCGTGCCAAGGGACAAAAAACATGGTAGTGGAGGAAGGCCTAATCGCACAACTGAGAAAGGTTTCTGGAAAGCCACCGGTTCGGACCGGAAAATCGTGACGTTATCGGATCCGAAACGCATAATCGGGTTGAGGAAGACGTTGGTTTTCTATGAGGGAAGAGCTCCAAGAGGAACCAAGACTGATTGGGTTATGAATGAATACCGTTTACCTGACAATAGCCCCTTGCCTAAGGTATTGTATATATATCTTTCTTCATTTGAATTTGAACTATATAGTCTACATTAGACCCATTCTGTAGTATATTTTTGGTTCCTATCATACGATGACTAATTGACCATAACCATATAAGCTTTAACTATGAATGAATGTGAGTAAAGTTTTAGATTCATGCCCATGTGATTTTGATATATATCACGGGTTTATGTCATTTGATTTACATTGTTCGTTAATTTATCCTTCATTCAATGTAAAAAAAAAAGGGAAGGAGAAAATTATTGGTAGTTAAAGTAATATTTTGTAATCATTTTATAATGTACTAGTTATAAACTTAAAATCTTATTACTAAAATCAAAATTCATAAACCAAGTGATTGAACTCAAGTGGTTAATGAGCTCCTCATAGAACGAATTGTTCGAGAAAACCTGAGTTCGATTTCAAGTGAAAACAATTATTAGTCAGACTTTACTTACATCTCTACCAAACTCCAGATTACTAGGATCATTTTCCCCTAGGAACCGGACTAGTAATCCAGAGGGTTAAAACCAAAAAACAAACATGACACTTCATAGGAAAATAATAATAAGTTCCTTCATTCAATTATATATAGTTCATTGATTTATTCATAATTTCTTACAAGATGATATGCTTGCTTTGTTATGGCCAGATTCTCCCAAATAACATGGGAATCTTTTTTACTTTTTTCACAAGAGGGAATTTGTTTATTTTAGTCACAAATTGGACTAGCTAGGAGTTAATTAACGTGCATATCTCTTACATGGAAGGGAAATTTCCATGAAGATAGCTAGGTAGTGACACTTTCTTTCTGTACAAGTATTGTGGTCCCCTTATGAACCTTTCGTTTCTTTCATGATGAAGTTCCAATTAAGACTTGCAACTAATTAAGATTAAATGTCTTCAAATTTCAAGCAAACATAAACTAATGAAATTGGTTTACTATTTCTACTTACAGCAAAAAAAAAAAAAAATACTAATATATGCCATGGTACGTATGTGACAGGACATAGTATTATGCAAGATATATAGAAAGGCAACTTCGTTGAAAGTGCTTGAACAAAGAGCAGCAGAAGAAGAAGAGATGAAACAAATGGTGGGTTCCCCTACATCTTCCCCACCTTCTTCCTCTACGGACACAATCTCCTTTAACTACACACAACAAGACCAACACGTGTCCATGCCCTTATTGTTTCAACAAGTCATTCCTAAGAAAGAATCTGAACATGAAATAATTAAAACTGAAGACATGGTTTCTTTGTCAAGTCATGAAAAAATTGTGAAAGATAATAAAAAGGCTTGTGGAACATCTTTGCAATTGCCCTTAGGGAAGGACAATGTACCTGAACTTCAGTTACCTATAGCTGCAGATTGGACCCAAGATACATTTTGGGCTCAGCTTAATAGTCCTTGGCTACAAAACTGGAGTGCTTACACTAATATCCTGAATTTTTAA
Protein sequence

>MS.gene28933.t1

MTSMEDINMCTEQITLPGFRFHPTEEELLDFYLKNMVVGKKLRYDVIGFLNIYHHDPCDLPGLSKVGEREWYFFVPRDKKHGSGGRPNRTTEKGFWKATGSDRKIVTLSDPKRIIGLRKTLVFYEGRAPRGTKTDWVMNEYRLPDNSPLPKDIVLCKIYRKATSLKVLEQRAAEEEEMKQMVGSPTSSPPSSSTDTISFNYTQQDQHVSMPLLFQQVIPKKESEHEIIKTEDMVSLSSHEKIVKDNKKACGTSLQLPLGKDNVPELQLPIAADWTQDTFWAQLNSPWLQNWSAYTNILNF