AlfalfaGEDB | MS.gene059820

M. sativa cultivar XinJiangDaYe / MS.gene059820

KEGG: -
GO: -
PFAM: PF11145.11

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059820.t1	XP_013464701.1	89.2	918	96	2	1	918	1	915	0.00E+00	1601.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059820.t1	A0A072VAU6	89.2	918	96	2	1	918	1	915	0.0e+00	1601.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050640	MS.gene059820	0.820544	6.48E-53	-1.69E-46
MS.gene051544	MS.gene059820	0.821985	3.02E-53	-1.69E-46
MS.gene052297	MS.gene059820	0.828422	9.07E-55	-1.69E-46
MS.gene052637	MS.gene059820	0.826809	2.21E-54	-1.69E-46
MS.gene054183	MS.gene059820	0.800443	1.44E-48	-1.69E-46
MS.gene055217	MS.gene059820	0.809453	1.88E-50	-1.69E-46
MS.gene057888	MS.gene059820	0.814919	1.21E-51	-1.69E-46
MS.gene059820	MS.gene060038	0.834905	2.29E-56	-1.69E-46
MS.gene059820	MS.gene07137	0.806241	9.05E-50	-1.69E-46
MS.gene059820	MS.gene073984	0.807222	5.62E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059820.t1	MTR_2g079300	93.682	918	55	2	1	918	1	915	0.0	1650
MS.gene059820.t1	MTR_2g079310	63.588	942	288	18	1	913	18	933	0.0	1078
MS.gene059820.t1	MTR_2g013640	39.434	918	495	23	26	907	38	930	0.0	576
MS.gene059820.t1	MTR_4g011610	30.361	415	249	13	499	888	612	1011	3.85e-41	164
MS.gene059820.t1	MTR_4g071100	80.769	52	10	0	625	676	1	52	9.02e-23	95.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059820.t1	AT4G21700	34.921	945	530	26	23	917	51	960	2.63e-164	505
MS.gene059820.t1	AT1G52780	25.443	621	378	24	321	885	419	1010	7.00e-45	176

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Find 161 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATAGGTTGTGTTGTT+AGG	0.295192	2.4:-18450350	None:intergenic
AAAACTATGTTGATAGGGGA+AGG	0.567626	2.4:+18449246	MS.gene059820:CDS
AAAAGATAGGAGCTATATTA+AGG	0.225281	2.4:+18450031	MS.gene059820:CDS
AAAAGGGCTTGTTTACATAT+TGG	0.321294	2.4:-18451041	None:intergenic
AAAGATAGGAGCTATATTAA+GGG	0.423119	2.4:+18450032	MS.gene059820:CDS
AAATGTTTGGAGAATGGACA+TGG	0.592263	2.4:+18450148	MS.gene059820:CDS
AACAAGGAATTCTTGTCAAA+AGG	0.413713	2.4:-18449837	None:intergenic
AACAAGTTCAGAATTACTTG+TGG	0.608075	2.4:-18450701	None:intergenic
AACACCAACAGCAAATTCTT+TGG	0.329524	2.4:+18449965	MS.gene059820:CDS
AACACTGGTTACTACATAGG+AGG	0.611864	2.4:+18448460	MS.gene059820:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAGGAATTCTTGTCAAA+AGG	-	chr2.4:18449840-18449859	None:intergenic	30.0%
AACAAGTTCAGAATTACTTG+TGG	-	chr2.4:18450704-18450723	None:intergenic	30.0%
AAGAAGAGAGAAGAAATGTT+TGG	+	chr2.4:18450135-18450154	MS.gene059820:CDS	30.0%
AATTGCACTCCTATAATTAG+TGG	+	chr2.4:18449078-18449097	MS.gene059820:CDS	30.0%
ACTTCAAAACGATAACAGTT+AGG	+	chr2.4:18449469-18449488	MS.gene059820:CDS	30.0%
ATCAAATTCACTTCTTGAGA+AGG	-	chr2.4:18449739-18449758	None:intergenic	30.0%
ATGTCATATGAATATGCATC+TGG	-	chr2.4:18449615-18449634	None:intergenic	30.0%
ATTGATTAACTCTACCAAGT+TGG	-	chr2.4:18449548-18449567	None:intergenic	30.0%
CATAAAATCTTATGGTGGTT+TGG	+	chr2.4:18450658-18450677	MS.gene059820:CDS	30.0%
CATAGATTCAAAGGATCAAA+GGG	+	chr2.4:18450977-18450996	MS.gene059820:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	18448295	18451051	18448295	ID=MS.gene059820
chr2.4	mRNA	18448295	18451051	18448295	ID=MS.gene059820.t1;Parent=MS.gene059820
chr2.4	exon	18448295	18451051	18448295	ID=MS.gene059820.t1.exon1;Parent=MS.gene059820.t1
chr2.4	CDS	18448295	18451051	18448295	ID=cds.MS.gene059820.t1;Parent=MS.gene059820.t1

Gene Sequence

>MS.gene059820

ATGAATTCTCTTCTTTCAAAGTTTTTCTTAGTTTTCACTTTCTTCTCCTTCAACCTTTTATTCTCATTAGCCTCAAAATCATCTTACAAAGAACATTGTGCTTCCATCATCCCAGAAACAACTCCAACAACAAAGAAATTCAACTCTTTCCCTATAAGTGATCACAACACTGGTTACTACATAGGAGGTGATAGTATCATCAACATTGATGCTTCTTGGAACCAATTCTCCTTATACTTTCCATCAAGAAACACATATGCAACTTCACATCCTCACCTTTTCAAAATTGAAGGCACTATATCCTTTAGAACCAACAATGATGCTTCATATTATAATCATCATCATAGTTTTGGTTACTTAACCTTCAAGCTTGATGGTTTTTGGTCTCAATCTTCAGGAAATGTTTGCATGGTTGGAAAAAGCAAAGGTGTTTCGAAAAAAGGTGATTCTATCAATCTTGATGTTGTTTTTAAGCTTAACAATGTCTTCAATTCAAGTAATATAACTAGTTTGGTTAGTGGAAGCTTAGAGAGTTTGAGTTCTGAAAAGGATCATGATGATCATTACTTTGAACCAATTTCTTTAATGATGTTTCCAAAAGCAAATTATAGTTATAGTTTGGATTCTAAAGAAGTTGAAAACGAGTTCTCTTTTGGTAGTGATGATGATGAGGATGAGGGTTTACCATTAAACTTTGATTCATTCAGTTTTTGTAAATATCCTCTCTCAAGTGCTATTAGAAGACTCCAACTAGAGTACACTCATGAGTGCAATTCTTCAAAGAATTGCACTCCTATAATTAGTGGAAGTTCCAATCAATTACCATCACATATGTCTTTGAAAGGGATTGAATGTTCTTCAAAAAAGAAGAATAGGATTAGGGTTTTGGGGGAATTTTCGAATAGTTTTGATTACTATTGGAATAGGAATAATAGCCAAGGCTTCAATACCAAAACTATGTTGATAGGGGAAGGATGGTGGGATGACAAGAAAAACATGTTGTGTGTAGTTCTTTGCCATTTCAATGGTAGCAAATCTACATCCTTGGATGGGACTCATGTTGGTGATTGCTCATTAAGATTAAGATTGAGATTCCCCTCAATTTGGTCGATCAAAAATAGTAGTAGCATAGTTGGCCAAATTTGGAGCAACAAGAGGGATAATGATCAAAACTACTTCAAAACGATAACAGTTAGGAATGATGATGCGAATTATGGTGTGGGGGGTAAAGACTTAAGGTATGAATATAGCCAACTTGGTAGAGTTAATCAATCATGTCCACGACACAAAGTTGTTGAGAACCAAGGGAAAAGGTATCCAGATGCATATTCATATGACATGAAATTTGATATGTCGGTTAGAGAGTCCAAAAAAAGAGTAGCTTGGGGTTATTCCTCTCCTTCATTTGTTGATGATGAGTACCAATCTACATCTTCCGTTTCCTTCTCAAGAAGTGAATTTGATGCTGGAATCGTGAACAATGATAATGGTAGCTTGTTTAACATTAGCTACAAGATTAGCCTCTCAGCCATGTCTTCTTCGCCTTTTGACAAGAATTCCTTGTTTAACATGTCTTATTATTTGGTGAAGATTTCGGCAGAAGGAGTTTATGATTCAAGAGATGGAACCTTGTGTATGATTGGTTGCCGTGACCTTGTGTCAAACAAGGGAACACCAACAGCAAATTCTTTGGACTGTGAGATTCTGATGAAATTTCAGTTCCCTTCTTTAGATACAAAAGATAGGAGCTATATTAAGGGAAGCATTGAAAGCACACGCCCAGAATCCGATCCTCTTTACTTCAAACGTTTAGAGGTATCTGCGGTAGCGTATTACATCAAAGAAGAGAGAAGAAATGTTTGGAGAATGGACATGGAAGTTATCATGGCTCTGATATCTACAACTCTAGCATGTGTTTTCGTCGGATTGCAACTCAACCATGTGAAGAGAAACCCTAATGTGCTTCCCTTCATCTCAATTTTCATGATGTCGATTCTCACATTTGGTCACATGATACCACTTGTTCTCAATTTCGAAGCACTTCTTGCTAAAAATCCTAACAACACAACCTATGTTTTAGGAAATGTTGAAAAATGGCTTGAAGTTAATGAAATAAGTGTTAGGCTAATCAGCATGGTAGCTTTCTTATTGCAATTCCGTCTCCTGTATCTAACTTGGTCGTCCAGAAAAACTGACGAAAGCAAGAACAATCTCTGGATTGCCGAGAGAAAAGCTTCATATGTGACCTTCCCTTTGTATGCTGTCGGATTATTGATTGCATTGCTGTTGAAGTTAAAGAAGGATAGAGATTCGGTTACCTCAATGTACCAAGTCTACCAACAACATGATCCGTCATGGGAGAACATAAAATCTTATGGTGGTTTGGTATTGGATGGCTTTCTTGTGCCACAAGTAATTCTGAACTTGTTTTCAAATATGAATGAGAATGTTCTTTCATGCTCATTTTACTTTGGAACTACTTTTGTGAGACTCTTGCCACATGCTTACGATCTTTACAGGGCTCATAATTATGCTGACCAAGATAATGACCTATACTTCTATGCCGATCCAAGCCAAGATTTTTACTCAACTTATTGGGATATTATCATTCCTTTGGTAGGTATTGTACTTGCTATCATTATCTACTTGCAGCAATTTTTTGGTGCTCAATGTGTTCTGCCTCATAGATTCAAAGGATCAAAGGGATATGCAAAGGTGCCTGAATCAGAAGGAGAAGTAGAGACCACCAATATGTAA

Protein sequence

>MS.gene059820.t1

MNSLLSKFFLVFTFFSFNLLFSLASKSSYKEHCASIIPETTPTTKKFNSFPISDHNTGYYIGGDSIINIDASWNQFSLYFPSRNTYATSHPHLFKIEGTISFRTNNDASYYNHHHSFGYLTFKLDGFWSQSSGNVCMVGKSKGVSKKGDSINLDVVFKLNNVFNSSNITSLVSGSLESLSSEKDHDDHYFEPISLMMFPKANYSYSLDSKEVENEFSFGSDDDEDEGLPLNFDSFSFCKYPLSSAIRRLQLEYTHECNSSKNCTPIISGSSNQLPSHMSLKGIECSSKKKNRIRVLGEFSNSFDYYWNRNNSQGFNTKTMLIGEGWWDDKKNMLCVVLCHFNGSKSTSLDGTHVGDCSLRLRLRFPSIWSIKNSSSIVGQIWSNKRDNDQNYFKTITVRNDDANYGVGGKDLRYEYSQLGRVNQSCPRHKVVENQGKRYPDAYSYDMKFDMSVRESKKRVAWGYSSPSFVDDEYQSTSSVSFSRSEFDAGIVNNDNGSLFNISYKISLSAMSSSPFDKNSLFNMSYYLVKISAEGVYDSRDGTLCMIGCRDLVSNKGTPTANSLDCEILMKFQFPSLDTKDRSYIKGSIESTRPESDPLYFKRLEVSAVAYYIKEERRNVWRMDMEVIMALISTTLACVFVGLQLNHVKRNPNVLPFISIFMMSILTFGHMIPLVLNFEALLAKNPNNTTYVLGNVEKWLEVNEISVRLISMVAFLLQFRLLYLTWSSRKTDESKNNLWIAERKASYVTFPLYAVGLLIALLLKLKKDRDSVTSMYQVYQQHDPSWENIKSYGGLVLDGFLVPQVILNLFSNMNENVLSCSFYFGTTFVRLLPHAYDLYRAHNYADQDNDLYFYADPSQDFYSTYWDIIIPLVGIVLAIIIYLQQFFGAQCVLPHRFKGSKGYAKVPESEGEVETTNM