AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene28940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28940.t1 MTR_4g075690 98.711 543 7 0 1 543 1 543 0.0 1115
MS.gene28940.t1 MTR_4g075690 98.434 447 7 0 1 447 1 447 0.0 912
MS.gene28940.t1 MTR_3g115050 75.281 534 131 1 11 543 11 544 0.0 852
MS.gene28940.t1 MTR_1g026410 75.926 540 129 1 5 543 4 543 0.0 839
MS.gene28940.t1 MTR_4g049390 71.899 516 144 1 25 539 22 537 0.0 791
MS.gene28940.t1 MTR_2g088080 73.735 514 134 1 25 537 25 538 0.0 782
MS.gene28940.t1 MTR_4g048350 71.512 516 145 2 25 539 22 536 0.0 780
MS.gene28940.t1 MTR_4g132320 69.174 545 166 2 1 543 1 545 0.0 757
MS.gene28940.t1 MTR_2g088080 72.648 457 124 1 82 537 1 457 0.0 679
MS.gene28940.t1 MTR_8g479390 59.884 516 205 2 25 539 26 540 0.0 649
MS.gene28940.t1 MTR_5g018270 59.459 518 207 2 22 539 23 537 0.0 627
MS.gene28940.t1 MTR_8g479380 56.346 520 225 2 17 535 16 534 0.0 622
MS.gene28940.t1 MTR_4g083190 54.545 539 235 5 4 533 1 538 0.0 578
MS.gene28940.t1 MTR_4g083210 52.762 525 242 4 14 533 9 532 0.0 551
MS.gene28940.t1 MTR_3g083390 52.345 533 242 6 12 533 5 536 0.0 547
MS.gene28940.t1 MTR_3g083440 52.158 533 243 6 12 533 5 536 0.0 546
MS.gene28940.t1 MTR_3g083430 52.158 533 243 6 12 533 5 536 0.0 546
MS.gene28940.t1 MTR_3g083450 53.269 520 233 5 23 533 19 537 0.0 543
MS.gene28940.t1 MTR_3g083400 51.970 533 244 6 12 533 5 536 0.0 543
MS.gene28940.t1 MTR_3g083410 52.236 492 225 5 51 533 10 500 2.60e-174 502
MS.gene28940.t1 MTR_4g101650 49.634 546 250 8 13 534 7 551 9.56e-172 498
MS.gene28940.t1 MTR_3g008580 48.282 553 255 8 11 533 1 552 4.52e-171 497
MS.gene28940.t1 MTR_7g051440 50.000 526 242 8 27 533 26 549 1.12e-167 488
MS.gene28940.t1 MTR_1g090707 46.780 528 268 7 19 534 12 538 3.92e-155 456
MS.gene28940.t1 MTR_4g133150 56.250 208 71 3 134 338 21 211 8.26e-71 226
MS.gene28940.t1 MTR_5g020620 29.668 573 350 16 1 532 1 561 8.00e-60 207
MS.gene28940.t1 MTR_5g020600 29.754 568 338 18 10 532 15 566 1.39e-58 204
MS.gene28940.t1 MTR_4g015120 27.899 552 364 12 13 532 8 557 3.39e-53 189
MS.gene28940.t1 MTR_5g069680 27.419 558 362 14 10 532 9 558 2.77e-51 184
MS.gene28940.t1 MTR_3g462760 27.664 535 351 12 30 532 26 556 1.79e-50 182
MS.gene28940.t1 MTR_5g081810 28.295 516 326 14 53 532 22 529 5.52e-50 180
MS.gene28940.t1 MTR_3g078740 24.917 602 359 19 8 533 1 585 3.83e-45 168
MS.gene28940.t1 MTR_5g073210 28.471 569 345 21 10 532 8 560 3.46e-43 162
MS.gene28940.t1 MTR_3g078700 27.096 513 317 17 53 533 49 536 1.06e-42 160
MS.gene28940.t1 MTR_8g091390 26.186 569 339 18 25 537 29 572 1.72e-42 160
MS.gene28940.t1 MTR_8g027375 25.094 530 354 12 30 520 34 559 7.57e-40 152
MS.gene28940.t1 MTR_7g058690 27.644 539 327 20 7 492 12 540 9.15e-40 152
MS.gene28940.t1 MTR_7g458880 25.235 531 344 16 10 492 15 540 2.72e-39 151
MS.gene28940.t1 MTR_3g101640 27.547 530 328 16 13 492 8 531 3.69e-38 148
MS.gene28940.t1 MTR_2g008330 25.400 563 371 14 14 532 22 579 3.86e-38 148
MS.gene28940.t1 MTR_3g078730 24.953 533 349 13 30 533 25 535 2.45e-37 145
MS.gene28940.t1 MTR_7g060460 27.307 531 334 17 10 492 15 541 2.56e-37 145
MS.gene28940.t1 MTR_3g071890 26.047 549 361 16 1 509 4 547 3.71e-37 145
MS.gene28940.t1 MTR_3g101635 26.128 532 345 12 1 492 3 526 2.84e-36 142
MS.gene28940.t1 MTR_7g065980 27.444 532 331 21 9 492 7 531 1.18e-34 138
MS.gene28940.t1 MTR_7g062250 24.314 547 368 14 30 532 34 578 2.19e-34 137
MS.gene28940.t1 MTR_5g083360 24.645 564 374 16 16 532 8 567 3.14e-34 136
MS.gene28940.t1 MTR_7g062310 26.172 512 324 17 30 492 47 553 6.02e-33 133
MS.gene28940.t1 MTR_4g064530 24.951 509 341 15 30 498 44 551 2.08e-32 131
MS.gene28940.t1 MTR_7g065970 26.354 554 332 17 1 497 1 535 2.02e-31 128
MS.gene28940.t1 MTR_4g064530 24.950 505 336 16 30 492 44 547 1.78e-30 125
MS.gene28940.t1 MTR_4g019225 25.889 506 317 16 44 498 40 538 4.64e-30 124
MS.gene28940.t1 MTR_4g133160 53.571 112 32 2 414 522 1 95 8.80e-30 112
MS.gene28940.t1 MTR_5g018290 60.606 66 26 0 474 539 5 70 9.00e-23 92.4
MS.gene28940.t1 MTR_5g081790 26.543 162 104 4 21 168 9 169 1.02e-11 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28940.t1 AT1G76160 75.188 532 132 0 12 543 10 541 0.0 857
MS.gene28940.t1 AT1G41830 73.734 533 139 1 12 543 10 542 0.0 842
MS.gene28940.t1 AT4G38420 71.508 537 146 3 13 542 13 549 0.0 791
MS.gene28940.t1 AT1G21850 69.259 540 162 2 1 540 3 538 0.0 785
MS.gene28940.t1 AT1G21860 68.598 535 164 2 1 535 3 533 0.0 778
MS.gene28940.t1 AT4G22010 70.554 523 152 2 23 543 19 541 0.0 773
MS.gene28940.t1 AT4G28090 64.286 532 181 6 13 538 12 540 0.0 708
MS.gene28940.t1 AT4G38420 71.215 469 128 3 13 474 13 481 0.0 679
MS.gene28940.t1 AT5G66920 58.494 518 214 1 22 539 29 545 0.0 642
MS.gene28940.t1 AT4G38420 71.493 442 119 3 13 447 13 454 0.0 639
MS.gene28940.t1 AT4G37160 53.578 545 244 3 4 543 1 541 0.0 583
MS.gene28940.t1 AT1G55570 53.591 543 236 5 11 538 5 546 0.0 580
MS.gene28940.t1 AT3G13400 54.562 537 234 4 10 537 7 542 0.0 578
MS.gene28940.t1 AT3G13400 54.562 537 234 4 10 537 7 542 0.0 578
MS.gene28940.t1 AT1G55560 52.865 541 245 4 6 537 2 541 0.0 569
MS.gene28940.t1 AT2G23630 53.831 522 240 1 15 535 14 535 0.0 565
MS.gene28940.t1 AT2G23630 53.831 522 240 1 15 535 19 540 0.0 565
MS.gene28940.t1 AT3G13390 55.364 522 222 4 26 537 24 544 0.0 564
MS.gene28940.t1 AT5G48450 49.177 547 262 10 1 534 1 544 0.0 524
MS.gene28940.t1 AT5G48450 49.177 547 262 10 1 534 1 544 0.0 523
MS.gene28940.t1 AT1G75790 49.259 540 261 5 8 535 6 544 1.28e-178 514
MS.gene28940.t1 AT4G12420 49.460 556 257 9 8 542 4 556 1.90e-178 515
MS.gene28940.t1 AT4G12420 49.460 556 257 9 8 542 4 556 1.90e-178 515
MS.gene28940.t1 AT4G25240 49.367 553 255 9 4 533 1 551 1.75e-176 511
MS.gene28940.t1 AT4G25240 49.367 553 255 9 4 533 1 551 1.75e-176 511
MS.gene28940.t1 AT5G51480 48.162 544 258 9 19 539 17 559 4.27e-176 509
MS.gene28940.t1 AT4G37160 53.898 449 202 2 4 447 1 449 1.17e-167 483
MS.gene28940.t1 AT2G38080 28.826 562 350 15 10 532 8 558 2.24e-58 204
MS.gene28940.t1 AT5G58910 28.174 575 355 15 8 532 1 567 1.24e-56 199
MS.gene28940.t1 AT5G58910 29.714 525 318 14 51 532 50 566 4.99e-56 197
MS.gene28940.t1 AT5G58910 29.333 525 313 15 51 532 14 523 1.31e-51 184
MS.gene28940.t1 AT4G39830 26.897 580 354 17 11 535 16 580 3.44e-51 184
MS.gene28940.t1 AT5G01190 26.761 568 361 14 7 532 4 558 4.61e-49 178
MS.gene28940.t1 AT5G03260 27.128 564 365 15 8 532 1 557 2.58e-48 176
MS.gene28940.t1 AT5G21105 26.455 567 336 18 25 533 33 576 4.71e-48 176
MS.gene28940.t1 AT5G01190 27.672 524 326 13 51 532 32 544 7.28e-47 172
MS.gene28940.t1 AT5G21105 27.168 519 302 17 30 490 38 538 7.17e-46 169
MS.gene28940.t1 AT5G21100 25.678 553 339 16 34 533 28 561 4.06e-44 165
MS.gene28940.t1 AT2G30210 28.044 542 322 18 6 492 2 530 1.93e-42 160
MS.gene28940.t1 AT5G05390 26.335 562 366 17 13 532 10 565 4.15e-40 153
MS.gene28940.t1 AT2G46570 24.675 539 356 15 30 526 32 562 1.76e-38 149
MS.gene28940.t1 AT5G01040 27.514 527 325 15 10 492 13 526 1.05e-37 147
MS.gene28940.t1 AT5G09360 26.625 477 311 12 51 492 57 529 1.28e-37 146
MS.gene28940.t1 AT5G48100 27.129 505 311 17 51 507 43 538 2.36e-37 145
MS.gene28940.t1 AT4G39830 26.531 490 292 16 98 534 10 484 4.66e-37 144
MS.gene28940.t1 AT4G39830 26.531 490 292 16 98 534 8 482 6.25e-37 143
MS.gene28940.t1 AT1G18140 24.955 557 350 18 30 531 29 572 4.42e-36 142
MS.gene28940.t1 AT5G01050 27.239 547 329 17 10 505 13 541 1.17e-35 141
MS.gene28940.t1 AT2G29130 26.515 528 339 19 10 492 10 533 1.90e-35 140
MS.gene28940.t1 AT5G07130 26.132 574 367 18 9 532 3 569 2.73e-35 140
MS.gene28940.t1 AT2G40370 24.315 584 383 15 4 532 1 580 4.95e-35 139
MS.gene28940.t1 AT3G09220 26.236 526 334 16 11 492 12 527 7.96e-35 138
MS.gene28940.t1 AT4G39830 26.122 490 281 16 98 534 10 471 4.78e-34 135
MS.gene28940.t1 AT5G21105 27.177 379 225 13 184 533 29 385 7.56e-32 127
MS.gene28940.t1 AT2G46570 24.481 482 314 15 87 526 4 477 1.16e-29 122
MS.gene28940.t1 AT5G60020 27.682 289 193 6 8 285 3 286 1.87e-25 110
MS.gene28940.t1 AT5G60020 27.682 289 193 6 8 285 3 286 1.93e-25 110
MS.gene28940.t1 AT3G09220 25.349 430 279 11 103 492 3 430 3.01e-25 109
MS.gene28940.t1 AT5G60020 29.268 246 158 6 51 285 14 254 6.66e-24 105
MS.gene28940.t1 AT5G07130 25.918 490 306 18 93 532 2 484 8.17e-24 105
MS.gene28940.t1 AT5G07130 25.918 490 306 18 93 532 2 484 8.17e-24 105

Find 134 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAAAGCTGCTGGTGGTTT+TGG 0.124056 4.4:+34591112 MS.gene28940:CDS
TCTTACCAAGATGGAGTTTA+TGG 0.139950 4.4:+34590992 MS.gene28940:CDS
ACATTGATGGATACTCATTT+TGG 0.174475 4.4:+34592485 MS.gene28940:CDS
CTTCAACTCGTTTCACTAAT+AGG 0.190901 4.4:+34591837 MS.gene28940:CDS
TTAGTAACAGAGTAGATTTC+TGG 0.213058 4.4:-34589829 None:intergenic
AACTCACAACAACCTCTTTC+AGG 0.244426 4.4:+34591893 MS.gene28940:CDS
GATCTACCAGAAGGGGTATC+TGG 0.247730 4.4:-34592370 None:intergenic
GGAATGTGAGGAGTGAATTT+TGG 0.258017 4.4:+34592976 MS.gene28940:CDS
TCAAGGCCACATCATGAAAT+TGG 0.262122 4.4:+34591694 MS.gene28940:CDS
CCACAAAGAAGAGCATTCTT+TGG 0.269382 4.4:-34593077 None:intergenic
CTTATCAATGGTCAATTTCC+TGG 0.281749 4.4:+34589805 MS.gene28940:CDS
CCAAAGAATGCTCTTCTTTG+TGG 0.292466 4.4:+34593077 MS.gene28940:CDS
TTCAAACTTCATTCTCATAA+TGG 0.300039 4.4:-34593125 None:intergenic
AGAAGAGCATTCTTTGGAAT+TGG 0.303850 4.4:-34593071 None:intergenic
GTGTAATCATTAGCTGGTTC+AGG 0.306591 4.4:-34591178 None:intergenic
TTCAACTCGTTTCACTAATA+GGG 0.306828 4.4:+34591838 MS.gene28940:CDS
TTGTATTGGTTACGACTATT+AGG 0.313314 4.4:-34592750 None:intergenic
CTTCAAGTCAAGGATCAAAT+TGG 0.321992 4.4:+34591058 MS.gene28940:CDS
AGTGGTCGGTCCACCGGGAA+TGG 0.326129 4.4:-34591918 None:intergenic
ATTCAGATGCTGGATCAATT+AGG 0.328006 4.4:+34593039 MS.gene28940:CDS
GTGGTCGGTCCACCGGGAAT+GGG 0.330034 4.4:-34591917 None:intergenic
CTGAGGAAAGTTCTAGATTT+CGG 0.335594 4.4:+34591439 MS.gene28940:CDS
TACAACATACACTCAACTTT+AGG 0.338339 4.4:+34591669 MS.gene28940:CDS
TGGTATGATCCTTGTGGATT+TGG 0.339764 4.4:-34592178 None:intergenic
GTCATGGACTGCAATTTATA+TGG 0.346150 4.4:+34592932 MS.gene28940:CDS
GTCCAGTCAAAGAATCTATA+AGG 0.347743 4.4:-34589639 None:intergenic
CCTCTTTCAGGCCCCATTCC+CGG 0.356165 4.4:+34591905 MS.gene28940:CDS
AACTTTGGACGATACTTTCA+TGG 0.356230 4.4:-34592459 None:intergenic
CAGCATCTCTTAGGTTGTAT+TGG 0.360857 4.4:-34592764 None:intergenic
GATCCTTGTGGATTTGGCCT+TGG 0.375319 4.4:-34592172 None:intergenic
TTCAGATGCTGGATCAATTA+GGG 0.377202 4.4:+34593040 MS.gene28940:CDS
AGCATCCCAGATACCCCTTC+TGG 0.390553 4.4:+34592364 MS.gene28940:CDS
ATGAACATCTATTGAGTCAT+AGG 0.395960 4.4:-34591750 None:intergenic
ACACATTTCTCATTGGTGAT+TGG 0.410219 4.4:+34591197 MS.gene28940:CDS
CTAGCTGATTACTTCAAGAT+TGG 0.412868 4.4:+34592322 MS.gene28940:CDS
AATGATTACACATTTCTCAT+TGG 0.414702 4.4:+34591190 MS.gene28940:CDS
CATGATAAAAGAAATGGTTC+TGG 0.417085 4.4:-34589886 None:intergenic
TGTTACCATGATAAAAGAAA+TGG 0.418474 4.4:-34589892 None:intergenic
ATCCTTATAGATTCTTTGAC+TGG 0.423381 4.4:+34589637 MS.gene28940:CDS
GTCCAAAGTTGGCACATTGA+TGG 0.424178 4.4:+34592472 MS.gene28940:CDS
ACACTCAACTTTAGGATTCA+AGG 0.438553 4.4:+34591677 MS.gene28940:CDS
TTGCAGGGCATTCTTATCAA+TGG 0.439744 4.4:+34589793 MS.gene28940:intron
ATCCATCAATGTGCCAACTT+TGG 0.444509 4.4:-34592474 None:intergenic
CTTATCAATGGTCATGCAAA+TGG 0.445715 4.4:+34591490 MS.gene28940:CDS
TCCTAGACACAGCATCTCTT+AGG 0.448380 4.4:-34592773 None:intergenic
ATGAAATTGGTTGAAGTTGA+GGG 0.453531 4.4:+34591707 MS.gene28940:CDS
ACCACATGTCCCATCCCTCC+TGG 0.460131 4.4:+34591016 MS.gene28940:CDS
ACCTGATGGATCTAGCTTGT+TGG 0.463194 4.4:-34591958 None:intergenic
CTTCTTTGTGGCAAAGCAGT+GGG 0.465661 4.4:+34593089 MS.gene28940:CDS
GCTGGTTCAGGGAAAGGAAC+AGG 0.467542 4.4:-34591166 None:intergenic
CCACAAGGATCATACCACTA+TGG 0.467837 4.4:+34592184 MS.gene28940:CDS
ATAAGAACAGCTTGAGGGAG+TGG 0.475907 4.4:-34591472 None:intergenic
ATCTGAGTGGTCGGTCCACC+GGG 0.477150 4.4:-34591923 None:intergenic
GATCCATCAAAATCCTTAGC+AGG 0.481909 4.4:+34591134 MS.gene28940:CDS
GCAGAATGGACGGTGGTGTA+TGG 0.483733 4.4:+34592724 MS.gene28940:intron
CGTGCTTATCACAGCTGATC+AGG 0.483851 4.4:+34591790 MS.gene28940:CDS
ATCTACCAGAAGGGGTATCT+GGG 0.493408 4.4:-34592369 None:intergenic
CCTCAAGCTGTTCTTATCAA+TGG 0.493597 4.4:+34591478 MS.gene28940:CDS
TCCACTCGGAGTTAAACAAC+AGG 0.494721 4.4:+34589683 MS.gene28940:CDS
TGGTCGGTCCACCGGGAATG+GGG 0.495454 4.4:-34591916 None:intergenic
TTTGACTGGACTATTACTTA+CGG 0.497937 4.4:+34589651 MS.gene28940:CDS
AGCTTCAGAGGAGTGTCAGC+TGG 0.497960 4.4:-34592301 None:intergenic
GCTGATTACTTCAAGATTGG+TGG 0.498079 4.4:+34592325 MS.gene28940:CDS
GGGAAAGGAACAGGAATCCT+TGG 0.500790 4.4:-34591157 None:intergenic
ATGCGAGTATATTCAGATGC+TGG 0.504781 4.4:+34593029 MS.gene28940:CDS
CATGAAATTGGTTGAAGTTG+AGG 0.506111 4.4:+34591706 MS.gene28940:CDS
GATCTGAGTGGTCGGTCCAC+CGG 0.507077 4.4:-34591924 None:intergenic
TTATCAATGGTCAATTTCCT+GGG 0.508751 4.4:+34589806 MS.gene28940:CDS
AGAAATGTGTAATCATTAGC+TGG 0.513858 4.4:-34591184 None:intergenic
CAGGAATCCTTGGCCTGCTA+AGG 0.516087 4.4:-34591147 None:intergenic
TAAATTGCAGTCCATGACTT+AGG 0.517595 4.4:-34592927 None:intergenic
AAGTAATCAGCTAGCTTCAG+AGG 0.518399 4.4:-34592313 None:intergenic
TCATTAGCTGGTTCAGGGAA+AGG 0.520994 4.4:-34591172 None:intergenic
TGTAATCATTAGCTGGTTCA+GGG 0.522087 4.4:-34591177 None:intergenic
AAGTTCTTCCCAGGAGGGAT+GGG 0.522984 4.4:-34591025 None:intergenic
GAAGTTCTTCCCAGGAGGGA+TGG 0.529815 4.4:-34591026 None:intergenic
AACAAAGCAAGTAGTTGCAT+TGG 0.537596 4.4:-34589576 None:intergenic
CCGGGAATGGGGCCTGAAAG+AGG 0.539332 4.4:-34591905 None:intergenic
GCAACAATGTAGTAGTCCTT+CGG 0.540184 4.4:-34591815 None:intergenic
AGTTCAGCAGCACAAGTGAA+TGG 0.541477 4.4:+34592241 MS.gene28940:CDS
AGGAGAAATTCTTACCAAGA+TGG 0.542021 4.4:+34590983 MS.gene28940:CDS
CCCAGGAGGGATGGGACATG+TGG 0.546425 4.4:-34591017 None:intergenic
TATCTGGGATGCTACCAACT+TGG 0.549445 4.4:-34592354 None:intergenic
TGGTTCCATAAACTCCATCT+TGG 0.552233 4.4:-34590997 None:intergenic
GACCGACCACTCAGATCGAT+TGG 0.555626 4.4:+34591930 MS.gene28940:CDS
AGGACAAATCTTACTGCAAG+TGG 0.560965 4.4:+34592148 MS.gene28940:intron
CATTGATAAGAACAGCTTGA+GGG 0.561031 4.4:-34591477 None:intergenic
GTACACTGATACTTCAGTCA+TGG 0.561692 4.4:+34592396 MS.gene28940:CDS
TCCAACAAGCTAGATCCATC+AGG 0.562193 4.4:+34591957 MS.gene28940:CDS
AGACTTAGAATATCAAATGT+TGG 0.562643 4.4:+34591644 MS.gene28940:CDS
TACGGTGATATTTATCCACT+CGG 0.565135 4.4:+34589669 MS.gene28940:CDS
CTTCAACCAATTTCATGATG+TGG 0.567105 4.4:-34591700 None:intergenic
ATGAAAGTATCGTCCAAAGT+TGG 0.568460 4.4:+34592461 MS.gene28940:CDS
TCTTCTTTGTGGCAAAGCAG+TGG 0.568771 4.4:+34593088 MS.gene28940:CDS
CACAGCTGATCAGGCACCGA+AGG 0.570170 4.4:+34591799 MS.gene28940:CDS
TTATGTTTATCATACCATAG+TGG 0.574728 4.4:-34592198 None:intergenic
TACACTGATACTTCAGTCAT+GGG 0.574862 4.4:+34592397 MS.gene28940:CDS
CACATATACACTTCAAGTCA+AGG 0.576744 4.4:+34591048 MS.gene28940:CDS
ACAGAGTAGATTTCTGGCCC+AGG 0.577570 4.4:-34589823 None:intergenic
ACCTAAGAGATGCTGTGTCT+AGG 0.579180 4.4:+34592772 MS.gene28940:CDS
CCACATGTCCCATCCCTCCT+GGG 0.583499 4.4:+34591017 MS.gene28940:CDS
ACCTGTTGTTTAACTCCGAG+TGG 0.583836 4.4:-34589684 None:intergenic
TCAAAATCCTTAGCAGGCCA+AGG 0.584089 4.4:+34591140 MS.gene28940:CDS
ACATCATTCACTGTTGAACA+AGG 0.586268 4.4:+34591514 MS.gene28940:CDS
GACCAATCGATCTGAGTGGT+CGG 0.592893 4.4:-34591932 None:intergenic
CCATAGTGGTATGATCCTTG+TGG 0.593975 4.4:-34592184 None:intergenic
GCTTTGTGAAAAGCAAGAGA+TGG 0.595885 4.4:-34591097 None:intergenic
GTATATGTGAAGTTCTTCCC+AGG 0.597699 4.4:-34591034 None:intergenic
GATGGATCTAGCTTGTTGGA+TGG 0.598390 4.4:-34591954 None:intergenic
TGTACATTGATCTACCAGAA+GGG 0.599518 4.4:-34592378 None:intergenic
CACTAGACAATGTGGGAATG+TGG 0.600172 4.4:+34592955 MS.gene28940:CDS
CCATTGATAAGAACAGCTTG+AGG 0.610225 4.4:-34591478 None:intergenic
CTTTCAGGCCCCATTCCCGG+TGG 0.617594 4.4:+34591908 MS.gene28940:CDS
ACAGGAATGGTGTTCAACAA+AGG 0.618737 4.4:+34590963 MS.gene28940:intron
TATATGAATCTCAGAAGCTG+AGG 0.620762 4.4:+34591422 MS.gene28940:intron
CATTTCTAATGCAGAATGGA+CGG 0.620989 4.4:+34592714 MS.gene28940:intron
GTGTACATTGATCTACCAGA+AGG 0.628287 4.4:-34592379 None:intergenic
CTGATCAGCTGTGATAAGCA+CGG 0.630381 4.4:-34591789 None:intergenic
CTCAGGTATATCCTAAGTCA+TGG 0.631745 4.4:+34592916 MS.gene28940:intron
ATGTGGGAATGTGGAATGTG+AGG 0.633524 4.4:+34592964 MS.gene28940:CDS
ATGTGAAGTTCTTCCCAGGA+GGG 0.636920 4.4:-34591030 None:intergenic
TGTGTCTAGGAGCACAACAC+AGG 0.641217 4.4:+34592785 MS.gene28940:CDS
GACTCAATAGATGTTCATGT+CGG 0.642501 4.4:+34591755 MS.gene28940:CDS
GGACCAAGGCCAAATCCACA+AGG 0.651492 4.4:+34592169 MS.gene28940:CDS
ACACGATCTCAACGAAGGCG+CGG 0.656942 4.4:-34592429 None:intergenic
ATCTTACTGCAAGTGGACCA+AGG 0.657746 4.4:+34592155 MS.gene28940:CDS
TTATATGGCACTAGACAATG+TGG 0.668761 4.4:+34592947 MS.gene28940:CDS
GTACATTGATCTACCAGAAG+GGG 0.678351 4.4:-34592377 None:intergenic
TTGGTACAAGATTGATCACA+CGG 0.678759 4.4:+34591216 MS.gene28940:CDS
TATGTGAAGTTCTTCCCAGG+AGG 0.683481 4.4:-34591031 None:intergenic
CTGAAACACGATCTCAACGA+AGG 0.684228 4.4:-34592434 None:intergenic
TATATGGCACTAGACAATGT+GGG 0.701854 4.4:+34592948 MS.gene28940:CDS
TTCTAATGCAGAATGGACGG+TGG 0.708926 4.4:+34592717 MS.gene28940:intron
GATGGACCAATCGATCTGAG+TGG 0.735511 4.4:-34591936 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAATTAAATTTCAATCA+TGG + chr4.4:34592691-34592710 MS.gene28940:intron 10.0%
!! ATTAAAAAAATTCAATAACT+TGG - chr4.4:34592888-34592907 None:intergenic 10.0%
!!! AGCTAAAAAATATTTTAAAA+TGG + chr4.4:34590389-34590408 MS.gene28940:intron 10.0%
!!! ATAAGTAATTTTATTTTTCT+CGG - chr4.4:34591271-34591290 None:intergenic 10.0%
!!! GCTAAAAAATATTTTAAAAT+GGG + chr4.4:34590390-34590409 MS.gene28940:intron 10.0%
!!! GTATTTACTTTTTATTTAAT+TGG + chr4.4:34590261-34590280 MS.gene28940:intron 10.0%
!! ATTAAGTTTATGTTCAATTA+AGG - chr4.4:34590876-34590895 None:intergenic 15.0%
!! CATAATTAATTCTATTCATA+TGG - chr4.4:34590478-34590497 None:intergenic 15.0%
!! TGTAGAAAATAAATGTTAAT+TGG - chr4.4:34591612-34591631 None:intergenic 15.0%
!!! AAATACTTGACTTTTATTTT+TGG - chr4.4:34590247-34590266 None:intergenic 15.0%
!!! AAGTTTTTATGAATTTCTAA+AGG - chr4.4:34590066-34590085 None:intergenic 15.0%
!!! AATTAACATTTATTTTCTAC+AGG + chr4.4:34591611-34591630 MS.gene28940:intron 15.0%
!!! ATTAACATTTATTTTCTACA+GGG + chr4.4:34591612-34591631 MS.gene28940:intron 15.0%
!! AAATTTGATTCCTTATACAA+TGG - chr4.4:34590041-34590060 None:intergenic 20.0%
!! TAATGATATTCAAAGATCAT+AGG - chr4.4:34592847-34592866 None:intergenic 20.0%
!! TGAATTGAATAAAAGGTTTA+AGG - chr4.4:34590657-34590676 None:intergenic 20.0%
!! TGATTAGACTAGAAATAAAT+CGG - chr4.4:34591384-34591403 None:intergenic 20.0%
!! TGTAAAATAGTTTAGAAGAA+AGG - chr4.4:34590576-34590595 None:intergenic 20.0%
!!! ATTAAACTTTTTTGTTTGTC+GGG + chr4.4:34590519-34590538 MS.gene28940:intron 20.0%
!!! ATTTCCATCAATTTTTTATC+CGG + chr4.4:34592541-34592560 MS.gene28940:intron 20.0%
!!! GATTAAACTTTTTTGTTTGT+CGG + chr4.4:34590518-34590537 MS.gene28940:intron 20.0%
!!! TTTCTTAGTAACTGAATTTT+AGG + chr4.4:34591580-34591599 MS.gene28940:intron 20.0%
!!! TTTTCATATTGAAATGAAAC+AGG + chr4.4:34590945-34590964 MS.gene28940:intron 20.0%
! AAATCCGGATAAAAAATTGA+TGG - chr4.4:34592548-34592567 None:intergenic 25.0%
! AATGATTACACATTTCTCAT+TGG + chr4.4:34591190-34591209 MS.gene28940:CDS 25.0%
! AGACTTAGAATATCAAATGT+TGG + chr4.4:34591644-34591663 MS.gene28940:CDS 25.0%
! AGAGAGAATAATGCATAAAA+AGG - chr4.4:34590816-34590835 None:intergenic 25.0%
! ATATTGAAATGAAACAGGAA+TGG + chr4.4:34590950-34590969 MS.gene28940:intron 25.0%
! CTCATTGTAATTTCATATGT+TGG - chr4.4:34590323-34590342 None:intergenic 25.0%
! TGTTACCATGATAAAAGAAA+TGG - chr4.4:34589895-34589914 None:intergenic 25.0%
! TTATGTTTATCATACCATAG+TGG - chr4.4:34592201-34592220 None:intergenic 25.0%
! TTTGTTAGCAAAAAAATGGT+TGG - chr4.4:34590693-34590712 None:intergenic 25.0%
!! AAAAAATGGTTGGTTATGAT+AGG - chr4.4:34590683-34590702 None:intergenic 25.0%
!! AAAAATGGTTGGTTATGATA+GGG - chr4.4:34590682-34590701 None:intergenic 25.0%
!! CTTATAATTTTGCATTTGCA+GGG + chr4.4:34589778-34589797 MS.gene28940:intron 25.0%
!! GGAATAATCACACAAAATTT+TGG + chr4.4:34590176-34590195 MS.gene28940:intron 25.0%
!! GGTTTTTGTTAGCAAAAAAA+TGG - chr4.4:34590697-34590716 None:intergenic 25.0%
!! TCTTATAATTTTGCATTTGC+AGG + chr4.4:34589777-34589796 MS.gene28940:intron 25.0%
!! TTTTTGCTAACAAAAACCAT+GGG + chr4.4:34590699-34590718 MS.gene28940:intron 25.0%
!!! TTTTTTGCTAACAAAAACCA+TGG + chr4.4:34590698-34590717 MS.gene28940:intron 25.0%
AAAAAGGCTTTCACTTAGTT+GGG - chr4.4:34590800-34590819 None:intergenic 30.0%
AATTGAACTCAATTACCTGA+TGG - chr4.4:34591975-34591994 None:intergenic 30.0%
AGAAATGTGTAATCATTAGC+TGG - chr4.4:34591187-34591206 None:intergenic 30.0%
ATCCTTATAGATTCTTTGAC+TGG + chr4.4:34589637-34589656 MS.gene28940:CDS 30.0%
ATGAAATTGGTTGAAGTTGA+GGG + chr4.4:34591707-34591726 MS.gene28940:CDS 30.0%
ATGAACATCTATTGAGTCAT+AGG - chr4.4:34591753-34591772 None:intergenic 30.0%
CATGATAAAAGAAATGGTTC+TGG - chr4.4:34589889-34589908 None:intergenic 30.0%
TAAAAAGGCTTTCACTTAGT+TGG - chr4.4:34590801-34590820 None:intergenic 30.0%
TACAACATACACTCAACTTT+AGG + chr4.4:34591669-34591688 MS.gene28940:CDS 30.0%
TAGGGAGTGAATTGAATAAA+AGG - chr4.4:34590664-34590683 None:intergenic 30.0%
TCATTATACTAGCTAAATGC+AGG + chr4.4:34592861-34592880 MS.gene28940:intron 30.0%
TGTAGCATAGTGATTAAATC+CGG - chr4.4:34592563-34592582 None:intergenic 30.0%
TTAGTAACAGAGTAGATTTC+TGG - chr4.4:34589832-34589851 None:intergenic 30.0%
TTATCAATGGTCAATTTCCT+GGG + chr4.4:34589806-34589825 MS.gene28940:CDS 30.0%
TTCAACTCGTTTCACTAATA+GGG + chr4.4:34591838-34591857 MS.gene28940:CDS 30.0%
TTTGACTGGACTATTACTTA+CGG + chr4.4:34589651-34589670 MS.gene28940:CDS 30.0%
! AACTATTTTACAACGACGTT+TGG + chr4.4:34590584-34590603 MS.gene28940:intron 30.0%
! ATTAAGTTGTTGCAATTCAC+AGG + chr4.4:34592128-34592147 MS.gene28940:intron 30.0%
! CAGAACCATTTCTTTTATCA+TGG + chr4.4:34589887-34589906 MS.gene28940:CDS 30.0%
! GTTCAATTTTTATACACCGT+CGG + chr4.4:34591987-34592006 MS.gene28940:intron 30.0%
! TTTAAGGTGACAGCAAAAAA+GGG - chr4.4:34590641-34590660 None:intergenic 30.0%
!! ACATTGATGGATACTCATTT+TGG + chr4.4:34592485-34592504 MS.gene28940:CDS 30.0%
!! CATTGATGGATACTCATTTT+GGG + chr4.4:34592486-34592505 MS.gene28940:CDS 30.0%
!! TTGTATTGGTTACGACTATT+AGG - chr4.4:34592753-34592772 None:intergenic 30.0%
!!! CACGGTACTATTTTTTTCTT+TGG + chr4.4:34590155-34590174 MS.gene28940:intron 30.0%
!!! TTTTTTAATTTGTGTGCCTC+AGG + chr4.4:34592899-34592918 MS.gene28940:intron 30.0%
AACAAAGCAAGTAGTTGCAT+TGG - chr4.4:34589579-34589598 None:intergenic 35.0%
AACTTTGGACGATACTTTCA+TGG - chr4.4:34592462-34592481 None:intergenic 35.0%
ACAGCAAAAAAGGGAATATG+AGG - chr4.4:34590632-34590651 None:intergenic 35.0%
ACAGTTGAGTTATTACTCGA+GGG + chr4.4:34590440-34590459 MS.gene28940:intron 35.0%
ACATCATTCACTGTTGAACA+AGG + chr4.4:34591514-34591533 MS.gene28940:CDS 35.0%
AGACCATGAGTGAACTAAAT+TGG - chr4.4:34591353-34591372 None:intergenic 35.0%
AGGAGAAATTCTTACCAAGA+TGG + chr4.4:34590983-34591002 MS.gene28940:CDS 35.0%
AGTAAAAATCATCACGTGTG+AGG + chr4.4:34590844-34590863 MS.gene28940:intron 35.0%
ATGAAGAGTCTCTTAGAGAT+TGG - chr4.4:34592023-34592042 None:intergenic 35.0%
ATGGCATTTCTAATGCAGAA+TGG + chr4.4:34592710-34592729 MS.gene28940:intron 35.0%
ATTCAGATGCTGGATCAATT+AGG + chr4.4:34593039-34593058 MS.gene28940:CDS 35.0%
CACATATACACTTCAAGTCA+AGG + chr4.4:34591048-34591067 MS.gene28940:CDS 35.0%
CATGAAATTGGTTGAAGTTG+AGG + chr4.4:34591706-34591725 MS.gene28940:CDS 35.0%
CATTGATAAGAACAGCTTGA+GGG - chr4.4:34591480-34591499 None:intergenic 35.0%
CATTTCTAATGCAGAATGGA+CGG + chr4.4:34592714-34592733 MS.gene28940:intron 35.0%
CTAGCTGATTACTTCAAGAT+TGG + chr4.4:34592322-34592341 MS.gene28940:CDS 35.0%
CTTATCAATGGTCAATTTCC+TGG + chr4.4:34589805-34589824 MS.gene28940:CDS 35.0%
CTTATCAATGGTCATGCAAA+TGG + chr4.4:34591490-34591509 MS.gene28940:CDS 35.0%
CTTCAACCAATTTCATGATG+TGG - chr4.4:34591703-34591722 None:intergenic 35.0%
CTTCAACTCGTTTCACTAAT+AGG + chr4.4:34591837-34591856 MS.gene28940:CDS 35.0%
CTTCAAGTCAAGGATCAAAT+TGG + chr4.4:34591058-34591077 MS.gene28940:CDS 35.0%
GACTCAATAGATGTTCATGT+CGG + chr4.4:34591755-34591774 MS.gene28940:CDS 35.0%
GATAAGTGAGCCATTGTATA+AGG + chr4.4:34590028-34590047 MS.gene28940:intron 35.0%
GATATACCTGAATACACACA+CGG + chr4.4:34590137-34590156 MS.gene28940:intron 35.0%
GATTGGATTATTTAGACCGA+CGG - chr4.4:34592006-34592025 None:intergenic 35.0%
GTCCAGTCAAAGAATCTATA+AGG - chr4.4:34589642-34589661 None:intergenic 35.0%
TAAATTGCAGTCCATGACTT+AGG - chr4.4:34592930-34592949 None:intergenic 35.0%
TACAACGACGTTTGGATTAA+GGG + chr4.4:34590592-34590611 MS.gene28940:intron 35.0%
TACACTGATACTTCAGTCAT+GGG + chr4.4:34592397-34592416 MS.gene28940:CDS 35.0%
TACGGTGATATTTATCCACT+CGG + chr4.4:34589669-34589688 MS.gene28940:CDS 35.0%
TATATGAATCTCAGAAGCTG+AGG + chr4.4:34591422-34591441 MS.gene28940:intron 35.0%
TATATGGCACTAGACAATGT+GGG + chr4.4:34592948-34592967 MS.gene28940:CDS 35.0%
TCTTACCAAGATGGAGTTTA+TGG + chr4.4:34590992-34591011 MS.gene28940:CDS 35.0%
TGTACATTGATCTACCAGAA+GGG - chr4.4:34592381-34592400 None:intergenic 35.0%
TTACAACGACGTTTGGATTA+AGG + chr4.4:34590591-34590610 MS.gene28940:intron 35.0%
TTATATGGCACTAGACAATG+TGG + chr4.4:34592947-34592966 MS.gene28940:CDS 35.0%
TTCAGATGCTGGATCAATTA+GGG + chr4.4:34593040-34593059 MS.gene28940:CDS 35.0%
TTGGTACAAGATTGATCACA+CGG + chr4.4:34591216-34591235 MS.gene28940:CDS 35.0%
! ACACATTTCTCATTGGTGAT+TGG + chr4.4:34591197-34591216 MS.gene28940:CDS 35.0%
! GAATGTGAGGAGTGAATTTT+GGG + chr4.4:34592977-34592996 MS.gene28940:CDS 35.0%
! GTCATGGACTGCAATTTATA+TGG + chr4.4:34592932-34592951 MS.gene28940:CDS 35.0%
! GTTTAAGGTGACAGCAAAAA+AGG - chr4.4:34590642-34590661 None:intergenic 35.0%
! TCTCCAATTTAGTTCACTCA+TGG + chr4.4:34591347-34591366 MS.gene28940:intron 35.0%
! TGTAATCATTAGCTGGTTCA+GGG - chr4.4:34591180-34591199 None:intergenic 35.0%
!! ACACTCAACTTTAGGATTCA+AGG + chr4.4:34591677-34591696 MS.gene28940:CDS 35.0%
!! AGAAGAGCATTCTTTGGAAT+TGG - chr4.4:34593074-34593093 None:intergenic 35.0%
!! ATGAAAGTATCGTCCAAAGT+TGG + chr4.4:34592461-34592480 MS.gene28940:CDS 35.0%
!! CTGAGGAAAGTTCTAGATTT+CGG + chr4.4:34591439-34591458 MS.gene28940:CDS 35.0%
!! GTTTTAATGAGCAAAGAACG+AGG + chr4.4:34590283-34590302 MS.gene28940:intron 35.0%
AACTCACAACAACCTCTTTC+AGG + chr4.4:34591893-34591912 MS.gene28940:CDS 40.0%
ACAGGAATGGTGTTCAACAA+AGG + chr4.4:34590963-34590982 MS.gene28940:intron 40.0%
AGATGTGACGATGTTTAGCT+AGG - chr4.4:34591330-34591349 None:intergenic 40.0%
AGGACAAATCTTACTGCAAG+TGG + chr4.4:34592148-34592167 MS.gene28940:intron 40.0%
ATAGTACCGTGTGTGTATTC+AGG - chr4.4:34590146-34590165 None:intergenic 40.0%
ATCCATCAATGTGCCAACTT+TGG - chr4.4:34592477-34592496 None:intergenic 40.0%
ATGCGAGTATATTCAGATGC+TGG + chr4.4:34593029-34593048 MS.gene28940:CDS 40.0%
CACAGTTGAGTTATTACTCG+AGG + chr4.4:34590439-34590458 MS.gene28940:intron 40.0%
CAGTTGAGTTATTACTCGAG+GGG + chr4.4:34590441-34590460 MS.gene28940:intron 40.0%
CATGACTTAGGATATACCTG+AGG - chr4.4:34592918-34592937 None:intergenic 40.0%
CCAAAGAATGCTCTTCTTTG+TGG + chr4.4:34593077-34593096 MS.gene28940:CDS 40.0%
CCATTGATAAGAACAGCTTG+AGG - chr4.4:34591481-34591500 None:intergenic 40.0%
CCTCAAGCTGTTCTTATCAA+TGG + chr4.4:34591478-34591497 MS.gene28940:CDS 40.0%
CTCAGGTATATCCTAAGTCA+TGG + chr4.4:34592916-34592935 MS.gene28940:intron 40.0%
GATCCATCAAAATCCTTAGC+AGG + chr4.4:34591134-34591153 MS.gene28940:CDS 40.0%
GATCCGTGACATGACATTAA+GGG - chr4.4:34590758-34590777 None:intergenic 40.0%
GATGTGACGATGTTTAGCTA+GGG - chr4.4:34591329-34591348 None:intergenic 40.0%
GCAACAATGTAGTAGTCCTT+CGG - chr4.4:34591818-34591837 None:intergenic 40.0%
GCTGATTACTTCAAGATTGG+TGG + chr4.4:34592325-34592344 MS.gene28940:CDS 40.0%
GCTTTGTGAAAAGCAAGAGA+TGG - chr4.4:34591100-34591119 None:intergenic 40.0%
GGGTGCATTTATTAAACCCA+TGG - chr4.4:34590718-34590737 None:intergenic 40.0%
GTACACTGATACTTCAGTCA+TGG + chr4.4:34592396-34592415 MS.gene28940:CDS 40.0%
GTACATTGATCTACCAGAAG+GGG - chr4.4:34592380-34592399 None:intergenic 40.0%
GTATATGTGAAGTTCTTCCC+AGG - chr4.4:34591037-34591056 None:intergenic 40.0%
GTGTACATTGATCTACCAGA+AGG - chr4.4:34592382-34592401 None:intergenic 40.0%
TCAAGGCCACATCATGAAAT+TGG + chr4.4:34591694-34591713 MS.gene28940:CDS 40.0%
TGATCCGTGACATGACATTA+AGG - chr4.4:34590759-34590778 None:intergenic 40.0%
TGGTATGATCCTTGTGGATT+TGG - chr4.4:34592181-34592200 None:intergenic 40.0%
TGGTTCCATAAACTCCATCT+TGG - chr4.4:34591000-34591019 None:intergenic 40.0%
! AAGTAATCAGCTAGCTTCAG+AGG - chr4.4:34592316-34592335 None:intergenic 40.0%
! CAGCATCTCTTAGGTTGTAT+TGG - chr4.4:34592767-34592786 None:intergenic 40.0%
! GGAATGTGAGGAGTGAATTT+TGG + chr4.4:34592976-34592995 MS.gene28940:CDS 40.0%
! GTGTAATCATTAGCTGGTTC+AGG - chr4.4:34591181-34591200 None:intergenic 40.0%
! TTGCAGGGCATTCTTATCAA+TGG + chr4.4:34589793-34589812 MS.gene28940:intron 40.0%
! TTTTGGGCACGACAATATCT+TGG + chr4.4:34592993-34593012 MS.gene28940:CDS 40.0%
!! CCACAAAGAAGAGCATTCTT+TGG - chr4.4:34593080-34593099 None:intergenic 40.0%
!!! ATTGGTGGTGTTTTCCAAGT+TGG + chr4.4:34592340-34592359 MS.gene28940:CDS 40.0%
!!! GATACTCATTTTGGGTTGTC+GGG + chr4.4:34592494-34592513 MS.gene28940:CDS 40.0%
!!! GGATACTCATTTTGGGTTGT+CGG + chr4.4:34592493-34592512 MS.gene28940:CDS 40.0%
ACCTAAGAGATGCTGTGTCT+AGG + chr4.4:34592772-34592791 MS.gene28940:CDS 45.0%
AGGCCCTTAATGTCATGTCA+CGG + chr4.4:34590752-34590771 MS.gene28940:intron 45.0%
AGTTCAGCAGCACAAGTGAA+TGG + chr4.4:34592241-34592260 MS.gene28940:CDS 45.0%
ATAAGAACAGCTTGAGGGAG+TGG - chr4.4:34591475-34591494 None:intergenic 45.0%
ATCTTACTGCAAGTGGACCA+AGG + chr4.4:34592155-34592174 MS.gene28940:CDS 45.0%
ATGTGAAGTTCTTCCCAGGA+GGG - chr4.4:34591033-34591052 None:intergenic 45.0%
ATGTGGGAATGTGGAATGTG+AGG + chr4.4:34592964-34592983 MS.gene28940:CDS 45.0%
CACTAGACAATGTGGGAATG+TGG + chr4.4:34592955-34592974 MS.gene28940:CDS 45.0%
CCACAAGGATCATACCACTA+TGG + chr4.4:34592184-34592203 MS.gene28940:CDS 45.0%
CCATAGTGGTATGATCCTTG+TGG - chr4.4:34592187-34592206 None:intergenic 45.0%
CTGAAACACGATCTCAACGA+AGG - chr4.4:34592437-34592456 None:intergenic 45.0%
CTGATCAGCTGTGATAAGCA+CGG - chr4.4:34591792-34591811 None:intergenic 45.0%
CTTCTTTGTGGCAAAGCAGT+GGG + chr4.4:34593089-34593108 MS.gene28940:CDS 45.0%
GACATTAAGGGCCTAAGTGA+TGG - chr4.4:34590746-34590765 None:intergenic 45.0%
GTCCAAAGTTGGCACATTGA+TGG + chr4.4:34592472-34592491 MS.gene28940:CDS 45.0%
TATGTGAAGTTCTTCCCAGG+AGG - chr4.4:34591034-34591053 None:intergenic 45.0%
TCAAAATCCTTAGCAGGCCA+AGG + chr4.4:34591140-34591159 MS.gene28940:CDS 45.0%
TCCAACAAGCTAGATCCATC+AGG + chr4.4:34591957-34591976 MS.gene28940:CDS 45.0%
TCCACTCGGAGTTAAACAAC+AGG + chr4.4:34589683-34589702 MS.gene28940:CDS 45.0%
TCCTAGACACAGCATCTCTT+AGG - chr4.4:34592776-34592795 None:intergenic 45.0%
TCTTCTTTGTGGCAAAGCAG+TGG + chr4.4:34593088-34593107 MS.gene28940:CDS 45.0%
TTCTAATGCAGAATGGACGG+TGG + chr4.4:34592717-34592736 MS.gene28940:intron 45.0%
! ACCTGATGGATCTAGCTTGT+TGG - chr4.4:34591961-34591980 None:intergenic 45.0%
! ACCTGTTGTTTAACTCCGAG+TGG - chr4.4:34589687-34589706 None:intergenic 45.0%
! TATCTGGGATGCTACCAACT+TGG - chr4.4:34592357-34592376 None:intergenic 45.0%
! TCATTAGCTGGTTCAGGGAA+AGG - chr4.4:34591175-34591194 None:intergenic 45.0%
! TGGCCTGCTAAGGATTTTGA+TGG - chr4.4:34591140-34591159 None:intergenic 45.0%
!! ATCTACCAGAAGGGGTATCT+GGG - chr4.4:34592372-34592391 None:intergenic 45.0%
!! CTTGCTTTTCACAAAGCTGC+TGG + chr4.4:34591103-34591122 MS.gene28940:CDS 45.0%
!! GATGGATCTAGCTTGTTGGA+TGG - chr4.4:34591957-34591976 None:intergenic 45.0%
AAGGGCCTAAGTGATGGTTG+AGG - chr4.4:34590740-34590759 None:intergenic 50.0%
AAGTTCTTCCCAGGAGGGAT+GGG - chr4.4:34591028-34591047 None:intergenic 50.0%
AGGGCCTAAGTGATGGTTGA+GGG - chr4.4:34590739-34590758 None:intergenic 50.0%
CACTTAGTTGGGCTTGGAGT+TGG - chr4.4:34590789-34590808 None:intergenic 50.0%
CGTGCTTATCACAGCTGATC+AGG + chr4.4:34591790-34591809 MS.gene28940:CDS 50.0%
GACCAATCGATCTGAGTGGT+CGG - chr4.4:34591935-34591954 None:intergenic 50.0%
GATCCTTGTGGATTTGGCCT+TGG - chr4.4:34592175-34592194 None:intergenic 50.0%
GATGGACCAATCGATCTGAG+TGG - chr4.4:34591939-34591958 None:intergenic 50.0%
GGCTTTCACTTAGTTGGGCT+TGG - chr4.4:34590795-34590814 None:intergenic 50.0%
GGGAAAGGAACAGGAATCCT+TGG - chr4.4:34591160-34591179 None:intergenic 50.0%
! AGTTGGGCTTGGAGTTGGTT+GGG - chr4.4:34590784-34590803 None:intergenic 50.0%
! CACAAAGCTGCTGGTGGTTT+TGG + chr4.4:34591112-34591131 MS.gene28940:CDS 50.0%
! GCTTTTCACAAAGCTGCTGG+TGG + chr4.4:34591106-34591125 MS.gene28940:CDS 50.0%
! TAGTTGGGCTTGGAGTTGGT+TGG - chr4.4:34590785-34590804 None:intergenic 50.0%
! TGTGTCTAGGAGCACAACAC+AGG + chr4.4:34592785-34592804 MS.gene28940:CDS 50.0%
!! ACAGAGTAGATTTCTGGCCC+AGG - chr4.4:34589826-34589845 None:intergenic 50.0%
!! GATCTACCAGAAGGGGTATC+TGG - chr4.4:34592373-34592392 None:intergenic 50.0%
ACACGATCTCAACGAAGGCG+CGG - chr4.4:34592432-34592451 None:intergenic 55.0%
AGCATCCCAGATACCCCTTC+TGG + chr4.4:34592364-34592383 MS.gene28940:CDS 55.0%
CAGGAATCCTTGGCCTGCTA+AGG - chr4.4:34591150-34591169 None:intergenic 55.0%
GAAGTTCTTCCCAGGAGGGA+TGG - chr4.4:34591029-34591048 None:intergenic 55.0%
GACCGACCACTCAGATCGAT+TGG + chr4.4:34591930-34591949 MS.gene28940:CDS 55.0%
GCACCCCTCAACCATCACTT+AGG + chr4.4:34590732-34590751 MS.gene28940:intron 55.0%
GCAGAATGGACGGTGGTGTA+TGG + chr4.4:34592724-34592743 MS.gene28940:intron 55.0%
GGACCAAGGCCAAATCCACA+AGG + chr4.4:34592169-34592188 MS.gene28940:CDS 55.0%
GGGCCTAAGTGATGGTTGAG+GGG - chr4.4:34590738-34590757 None:intergenic 55.0%
! GCTGGTTCAGGGAAAGGAAC+AGG - chr4.4:34591169-34591188 None:intergenic 55.0%
!! AGCTTCAGAGGAGTGTCAGC+TGG - chr4.4:34592304-34592323 None:intergenic 55.0%
ACCACATGTCCCATCCCTCC+TGG + chr4.4:34591016-34591035 MS.gene28940:CDS 60.0%
ATCTGAGTGGTCGGTCCACC+GGG - chr4.4:34591926-34591945 None:intergenic 60.0%
CCACATGTCCCATCCCTCCT+GGG + chr4.4:34591017-34591036 MS.gene28940:CDS 60.0%
CCTCTTTCAGGCCCCATTCC+CGG + chr4.4:34591905-34591924 MS.gene28940:CDS 60.0%
GATCTGAGTGGTCGGTCCAC+CGG - chr4.4:34591927-34591946 None:intergenic 60.0%
!! CACAGCTGATCAGGCACCGA+AGG + chr4.4:34591799-34591818 MS.gene28940:CDS 60.0%
AGTGGTCGGTCCACCGGGAA+TGG - chr4.4:34591921-34591940 None:intergenic 65.0%
CCCAGGAGGGATGGGACATG+TGG - chr4.4:34591020-34591039 None:intergenic 65.0%
CCGGGAATGGGGCCTGAAAG+AGG - chr4.4:34591908-34591927 None:intergenic 65.0%
CTTTCAGGCCCCATTCCCGG+TGG + chr4.4:34591908-34591927 MS.gene28940:CDS 65.0%
GTGGTCGGTCCACCGGGAAT+GGG - chr4.4:34591920-34591939 None:intergenic 65.0%
TGGTCGGTCCACCGGGAATG+GGG - chr4.4:34591919-34591938 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 34589558 34593133 34589558 ID=MS.gene28940
chr4.4 mRNA 34589558 34593133 34589558 ID=MS.gene28940.t1;Parent=MS.gene28940
chr4.4 exon 34589558 34589704 34589558 ID=MS.gene28940.t1.exon1;Parent=MS.gene28940.t1
chr4.4 CDS 34589558 34589704 34589558 ID=cds.MS.gene28940.t1;Parent=MS.gene28940.t1
chr4.4 exon 34589799 34589908 34589799 ID=MS.gene28940.t1.exon2;Parent=MS.gene28940.t1
chr4.4 CDS 34589799 34589908 34589799 ID=cds.MS.gene28940.t1;Parent=MS.gene28940.t1
chr4.4 exon 34590967 34591237 34590967 ID=MS.gene28940.t1.exon3;Parent=MS.gene28940.t1
chr4.4 CDS 34590967 34591237 34590967 ID=cds.MS.gene28940.t1;Parent=MS.gene28940.t1
chr4.4 exon 34591436 34591535 34591436 ID=MS.gene28940.t1.exon4;Parent=MS.gene28940.t1
chr4.4 CDS 34591436 34591535 34591436 ID=cds.MS.gene28940.t1;Parent=MS.gene28940.t1
chr4.4 exon 34591633 34591978 34591633 ID=MS.gene28940.t1.exon5;Parent=MS.gene28940.t1
chr4.4 CDS 34591633 34591978 34591633 ID=cds.MS.gene28940.t1;Parent=MS.gene28940.t1
chr4.4 exon 34592150 34592515 34592150 ID=MS.gene28940.t1.exon6;Parent=MS.gene28940.t1
chr4.4 CDS 34592150 34592515 34592150 ID=cds.MS.gene28940.t1;Parent=MS.gene28940.t1
chr4.4 exon 34592728 34592806 34592728 ID=MS.gene28940.t1.exon7;Parent=MS.gene28940.t1
chr4.4 CDS 34592728 34592806 34592728 ID=cds.MS.gene28940.t1;Parent=MS.gene28940.t1
chr4.4 exon 34592921 34593133 34592921 ID=MS.gene28940.t1.exon8;Parent=MS.gene28940.t1
chr4.4 CDS 34592921 34593133 34592921 ID=cds.MS.gene28940.t1;Parent=MS.gene28940.t1
Gene Sequence

>MS.gene28940

ATGAAGGTGATGAATGAACCAATGCAACTACTTGCTTTGTTGAGTTTCTGCTCAATCTTTTTTCTTGTTGCTGCTGAAGATCCTTATAGATTCTTTGACTGGACTATTACTTACGGTGATATTTATCCACTCGGAGTTAAACAACAGGTTTATTTTTATCACTATTTAGCTTAATTATTCTTCTTATTTTGTATTAACATAATCGTCTTCAGTGCATAATCTTATAATTTTGCATTTGCAGGGCATTCTTATCAATGGTCAATTTCCTGGGCCAGAAATCTACTCTGTTACTAATGACAATTTGATCATCAATGTGCACAATAATTTGCCAGAACCATTTCTTTTATCATGGTAACAACTCTACAACTATGTCTCTTATGATTATATTTCAATATCTTTCAATGAAATTTATGAAGCATATAGTATATTAGTATATCATGTTGCAATCGATACGAGTGTAATGCATAAATGATAAGTGAGCCATTGTATAAGGAATCAAATTTTACCTTTAGAAATTCATAAAAACTTGATATACTTGTTGCATATGAACGATATATTCAAGTTTATAAGTCACATGTAGATATACCTGAATACACACACGGTACTATTTTTTTCTTTGGAATAATCACACAAAATTTTGGAATAATCACACAAAATGAACACATTAAATACAATATTTACTTTGACCAAAAATAAAAGTCAAGTATTTACTTTTTATTTAATTGGTTTTAATGAGCAAAGAACGAGGTTTGAACATGCAATCCAACATATGAAATTACAATGAGTTTTACTTACAAGTCAATATATTATTTTATTTTACTAATTTTATTTAGCTAAAAAATATTTTAAAATGGGAAAATAATATTTTATTATGCATTAAGCACAGTTGAGTTATTACTCGAGGGGCTAAGTTTTGTCCATATGAATAGAATTAATTATGCTAAGTTTTTTATTCTACTTGATTAAACTTTTTTGTTTGTCGGGACACTTGTCTTAGTGAATTTGTATATAGAAGCCTTTCTTCTAAACTATTTTACAACGACGTTTGGATTAAGGGACAGAACAAAGCAACCTCATATTCCCTTTTTTGCTGTCACCTTAAACCTTTTATTCAATTCACTCCCTATCATAACCAACCATTTTTTTGCTAACAAAAACCATGGGTTTAATAAATGCACCCCTCAACCATCACTTAGGCCCTTAATGTCATGTCACGGATCAAACCCAACCAACTCCAAGCCCAACTAAGTGAAAGCCTTTTTATGCATTATTCTCTCTTTTTTGTTAGTAAAAATCATCACGTGTGAGGCTCAATCCTTAATTGAACATAAACTTAATTAACTTGCATGCTAAGTTAACTAAAAAAAATCATTATGAAGCTCTAATCTTTTCATATTGAAATGAAACAGGAATGGTGTTCAACAAAGGAGAAATTCTTACCAAGATGGAGTTTATGGAACCACATGTCCCATCCCTCCTGGGAAGAACTTCACATATACACTTCAAGTCAAGGATCAAATTGGAAGCTTCTTCTGTTTTCCATCTCTTGCTTTTCACAAAGCTGCTGGTGGTTTTGGATCCATCAAAATCCTTAGCAGGCCAAGGATTCCTGTTCCTTTCCCTGAACCAGCTAATGATTACACATTTCTCATTGGTGATTGGTACAAGATTGATCACACGGTAAGCTTCATGCATAATTTAATATAGTATCCGAGAAAAATAAAATTACTTATTTGTCTCGAAGAAAAATAAATCTAGATAACTTCGTCCCTAGCTAAACATCGTCACATCTCCAATTTAGTTCACTCATGGTCTAAATTGTTCCGATTTATTTCTAGTCTAATCATTTTTGTTAACATGTGATTATATGAATCTCAGAAGCTGAGGAAAGTTCTAGATTTCGGACACAAACTTCCACTCCCTCAAGCTGTTCTTATCAATGGTCATGCAAATGGCACATCATTCACTGTTGAACAAGGTTTGTTTTATTGTTTGATCATTTTAAAATGTATGTTATATGTTTTTCTTAGTAACTGAATTTTAGGTGCTAACCAATTAACATTTATTTTCTACAGGGAAAACATACAGACTTAGAATATCAAATGTTGGACTACAACATACACTCAACTTTAGGATTCAAGGCCACATCATGAAATTGGTTGAAGTTGAGGGAACTCACACTGTACAAACATCCTATGACTCAATAGATGTTCATGTCGGACAATCTTACTCCGTGCTTATCACAGCTGATCAGGCACCGAAGGACTACTACATTGTTGCTTCAACTCGTTTCACTAATAGGGTTCTCACAAGCACTGCAGCACTTCACTACAGTAACTCACAACAACCTCTTTCAGGCCCCATTCCCGGTGGACCGACCACTCAGATCGATTGGTCCATCCAACAAGCTAGATCCATCAGGTAATTGAGTTCAATTTTTATACACCGTCGGTCTAAATAATCCAATCTCTAAGAGACTCTTCATAAATATTAAATACTTATAAAAAAAATACTAAAATACATGCTGCTATAAGTAAAAATTAACTTTATTTTTTATGAACTCTATTAATATTAAGTTGTTGCAATTCACAGGACAAATCTTACTGCAAGTGGACCAAGGCCAAATCCACAAGGATCATACCACTATGGTATGATAAACATAAGCAGAACAATTAAGCTTGAGAGTTCAGCAGCACAAGTGAATGGCAAGCAAAGATATGCAGTCAACAGTGTATCTTTCATACCAGCTGACACTCCTCTGAAGCTAGCTGATTACTTCAAGATTGGTGGTGTTTTCCAAGTTGGTAGCATCCCAGATACCCCTTCTGGTAGATCAATGTACACTGATACTTCAGTCATGGGTGCTGATTTCCGCGCCTTCGTTGAGATCGTGTTTCAGAACCATGAAAGTATCGTCCAAAGTTGGCACATTGATGGATACTCATTTTGGGTTGTCGGGTAAGAATTCACAACTACATTATTTATTTCCATCAATTTTTTATCCGGATTTAATCACTATGCTACAAAGTGTAAAAAGTGTTACACACATCTAATCGATCATAGTGAGATATGATTGAATACATGTGTAAAATAAAATTACAACATCATGAAACATTTAGTATTTTTCACTTTGAATTAATTAAATTTCAATCATGGCATTTCTAATGCAGAATGGACGGTGGTGTATGGACGCCTAATAGTCGTAACCAATACAACCTAAGAGATGCTGTGTCTAGGAGCACAACACAGGTTAGTTGTTTTATCAATGTTGTTATAATTAATTTTTCCTATGATCTTTGAATATCATTATACTAGCTAAATGCAGGACCAAGTTATTGAATTTTTTTAATTTGTGTGCCTCAGGTATATCCTAAGTCATGGACTGCAATTTATATGGCACTAGACAATGTGGGAATGTGGAATGTGAGGAGTGAATTTTGGGCACGACAATATCTTGGACAACAATTCTATATGCGAGTATATTCAGATGCTGGATCAATTAGGGATGAATATCCAATTCCAAAGAATGCTCTTCTTTGTGGCAAAGCAGTGGGCAGAGAAACTAGACCATTATGA
Protein sequence

>MS.gene28940.t1

MKVMNEPMQLLALLSFCSIFFLVAAEDPYRFFDWTITYGDIYPLGVKQQGILINGQFPGPEIYSVTNDNLIINVHNNLPEPFLLSWNGVQQRRNSYQDGVYGTTCPIPPGKNFTYTLQVKDQIGSFFCFPSLAFHKAAGGFGSIKILSRPRIPVPFPEPANDYTFLIGDWYKIDHTKLRKVLDFGHKLPLPQAVLINGHANGTSFTVEQGKTYRLRISNVGLQHTLNFRIQGHIMKLVEVEGTHTVQTSYDSIDVHVGQSYSVLITADQAPKDYYIVASTRFTNRVLTSTAALHYSNSQQPLSGPIPGGPTTQIDWSIQQARSIRTNLTASGPRPNPQGSYHYGMINISRTIKLESSAAQVNGKQRYAVNSVSFIPADTPLKLADYFKIGGVFQVGSIPDTPSGRSMYTDTSVMGADFRAFVEIVFQNHESIVQSWHIDGYSFWVVGMDGGVWTPNSRNQYNLRDAVSRSTTQVYPKSWTAIYMALDNVGMWNVRSEFWARQYLGQQFYMRVYSDAGSIRDEYPIPKNALLCGKAVGRETRPL