AlfalfaGEDB | MS.gene28966

M. sativa cultivar XinJiangDaYe / MS.gene28966

KEGG: K12183
GO: GO:0006464 GO:0006807 GO:0006810 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0015031 GO:0015833 GO:0019538 GO:0033036 GO:0036211 GO:0042886 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045184 GO:0051179 GO:0051234 GO:0071702 GO:0071704 GO:0071705 GO:1901564
PFAM: PF05743.16 PF09454.13

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28966.t1	RHN61599.1	94	415	21	2	1	415	1	411	5.80E-200	706.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28966.t1	Q9LHG8	60.9	417	137	5	1	411	1	397	2.0e-124	447.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28966.t1	A0A396I7K1	94.0	415	21	2	1	415	1	411	4.2e-200	706.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene060286	MS.gene28966	0.808928	2.43E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene006731	MS.gene28966	PPI
MS.gene070760	MS.gene28966	PPI
MS.gene070761	MS.gene28966	PPI
MS.gene28966	MS.gene070758	PPI
MS.gene28966	MS.gene045436	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28966.t1	MTR_4g075250	95.904	415	13	2	1	415	1	411	0.0	809
MS.gene28966.t1	MTR_5g075880	65.414	133	45	1	28	159	38	170	6.15e-51	170

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene28966.t1	AT3G12400	58.907	421	139	5	1	411	1	397	1.04e-162	463
MS.gene28966.t1	AT3G12400	58.852	418	138	5	1	408	1	394	1.87e-161	460
MS.gene28966.t1	AT3G12400	58.852	418	138	5	1	408	1	394	3.38e-161	461
MS.gene28966.t1	AT5G13860	57.246	414	127	6	1	411	1	367	1.03e-155	444
MS.gene28966.t1	AT2G38830	36.025	161	96	4	12	168	12	169	5.10e-25	105
MS.gene28966.t1	AT2G38830	28.947	228	125	7	190	386	96	317	2.79e-16	79.7

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Find 155 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACGAGGAGGGTGACGA+GGG	0.665903	4.4:-34830376	None:intergenic
AATCATCATTATGGTAGCTG+AGG	0.620092	4.4:+34831319	MS.gene28966:CDS
AATCCAGAAGGATTAACATG+AGG	0.672810	4.4:-34830440	None:intergenic
AATTGGGATGTTGTATGTGA+CGG	0.646465	4.4:-34830330	None:intergenic
AATTGTTGGGTTTCGGGGTT+TGG	0.182716	4.4:-34830107	None:intergenic
ACAACATCCCAATTGTTATC+TGG	0.333242	4.4:+34830339	MS.gene28966:CDS
ACCAATCAAAGTTCTAATTT+TGG	0.132572	4.4:+34830644	MS.gene28966:CDS
ACGCTTTATGCTTTAGATAA+GGG	0.364897	4.4:+34831154	MS.gene28966:CDS
ACGGCCGTCGTTGTGAGTGT+AGG	0.560561	4.4:-34830258	None:intergenic
ACTAGAGAAGGTGAAATGGA+GGG	0.549010	4.4:+34830869	MS.gene28966:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGATCAACCAAATTAGAACT+AGG	-	chr4.4:34830500-34830519	None:intergenic	30.0%
CTATTACTATTAATCCTACC+AGG	-	chr4.4:34830698-34830717	None:intergenic	30.0%
CTTTGATTGGTATTTGGATT+AGG	-	chr4.4:34830635-34830654	None:intergenic	30.0%
GATCAACCAAATTAGAACTA+GGG	-	chr4.4:34830499-34830518	None:intergenic	30.0%
TGTTTATGTTAATCCCACTA+GGG	+	chr4.4:34830394-34830413	MS.gene28966:CDS	30.0%
AATCCAGAAGGATTAACATG+AGG	-	chr4.4:34830443-34830462	None:intergenic	35.0%
AATTGGGATGTTGTATGTGA+CGG	-	chr4.4:34830333-34830352	None:intergenic	35.0%
ACAACATCCCAATTGTTATC+TGG	+	chr4.4:34830339-34830358	MS.gene28966:CDS	35.0%
AGAATCAAGGGAAGAAAATG+GGG	+	chr4.4:34831038-34831057	MS.gene28966:CDS	35.0%
AGTACAATCAAGCATCTGTT+TGG	-	chr4.4:34831110-34831129	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	34830092	34831339	34830092	ID=MS.gene28966
chr4.4	mRNA	34830092	34831339	34830092	ID=MS.gene28966.t1;Parent=MS.gene28966
chr4.4	exon	34830092	34831339	34830092	ID=MS.gene28966.t1.exon1;Parent=MS.gene28966.t1
chr4.4	CDS	34830092	34831339	34830092	ID=cds.MS.gene28966.t1;Parent=MS.gene28966.t1

Gene Sequence

>MS.gene28966

ATGGTTCCACCACCCCCAAACCCCGAAACCCAACAATTCCTCAGCTCAATCCTCTCCCAACGCGGCCCCTCCGCTCTCCCTTACTCCGAAGACACCAAATGGCTTATCCGTCAACATCTCCTCTCTCTCCTCACCACCTTCCCTTCTCTCGAACCCAAAACCGCCACCTACACTCACAACGACGGCCGTGCCGTCAATCTCCTTCAAGCCGATGGCACAATCCCCATGACCTACCAATCCGTCACATACAACATCCCAATTGTTATCTGGCTTATGGAATCTTACCCTCGTCACCCTCCTCGTGTTTATGTTAATCCCACTAGGGATATGATTATTAAACATGCTCATCCTCATGTTAATCCTTCTGGATTGGTTTCTGTTCCTTATTTGCATAATTGGATTTACCCTAGTTCTAATTTGGTTGATCTTGTTCTTGCTTTGAGTTTGATTTTTGGTCGTGATCCACCTCTTTTTTCTCAACGTAGACCTAATCCCAATCCTAATCCTAACCCTAACCCTAATCCTCATCAAAATCATAATCCTAATCCAAATACCAATCAAAGTTCTAATTTTGGAACTAATCCTCCATCTGGGTATATTCATCCTGGTAGGATTAATAGTAATAGTAATATTAATATTAATAGTTATCCTCCTTCGCCTTATTCCCCTGCGCCATCTCGGCCTACGCATACGGAGGATCCTACTGAGGTTTTTAGGAGGAATGCTATTAACAAGCTGGTGGAGATGGTGCATAACGATGTGACGGCGTTGAGGAAGACTAGAGAAGGTGAAATGGAGGGGTTGTTTGGTTTGCAAGGGGTATTGAAGCAGAGGGAGGAGGTTTTGAATAATGGTGTGAAGGAGATGCAAGATGAGATGGAGGGTTTGGAGCAGCAGTTGCAGATGGTTTTGATGAATACGGATGTTCTGGAGGGTTGGTTGAGGGAGAATCAAGGGAAGAAAATGGGGAGTTTGGAGAATGTTGAGGAGGCTTTTGAGTGTGTGGATGTGCTTTCCAAACAGATGCTTGATTGTACTTCTGCTGATTTGGCTATTGAAGATACGCTTTATGCTTTAGATAAGGGTGTTCAGGTTGGGGCTGTACCGTTTGATCAGTATTTGAGGAGTGTGAGGGCGTTGTCGAGGGAGCAGTTCTTCCACCGTGCTACGGCTGCTAAAGTTAGAGCTGCTCAGTTGCAGGCTCAGGTTGCGAATATGGCTGCTAGGAATCATCATTATGGTAGCTGA

Protein sequence

>MS.gene28966.t1

MVPPPPNPETQQFLSSILSQRGPSALPYSEDTKWLIRQHLLSLLTTFPSLEPKTATYTHNDGRAVNLLQADGTIPMTYQSVTYNIPIVIWLMESYPRHPPRVYVNPTRDMIIKHAHPHVNPSGLVSVPYLHNWIYPSSNLVDLVLALSLIFGRDPPLFSQRRPNPNPNPNPNPNPHQNHNPNPNTNQSSNFGTNPPSGYIHPGRINSNSNININSYPPSPYSPAPSRPTHTEDPTEVFRRNAINKLVEMVHNDVTALRKTREGEMEGLFGLQGVLKQREEVLNNGVKEMQDEMEGLEQQLQMVLMNTDVLEGWLRENQGKKMGSLENVEEAFECVDVLSKQMLDCTSADLAIEDTLYALDKGVQVGAVPFDQYLRSVRALSREQFFHRATAAKVRAAQLQAQVANMAARNHHYGS