AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene060286

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060286.t1 MTR_1g106855 99.208 379 3 0 1 379 1 379 0.0 771
MS.gene060286.t1 MTR_1g106855 98.966 290 3 0 1 290 1 290 0.0 592
MS.gene060286.t1 MTR_1g116260 58.735 332 127 2 17 340 28 357 2.80e-138 399
MS.gene060286.t1 MTR_1g112840 53.743 374 158 3 2 362 9 380 2.06e-137 397
MS.gene060286.t1 MTR_7g081020 51.459 377 161 3 6 362 1 375 1.05e-134 390
MS.gene060286.t1 MTR_8g074930 55.455 330 137 2 17 338 27 354 5.78e-130 378
MS.gene060286.t1 MTR_0015s0140 54.969 322 142 1 18 339 36 354 6.19e-129 375
MS.gene060286.t1 MTR_2g033910 53.538 325 148 2 16 339 30 352 1.69e-123 361
MS.gene060286.t1 MTR_1g067210 55.183 328 137 2 20 339 27 352 2.64e-122 358
MS.gene060286.t1 MTR_7g100240 54.683 331 140 2 16 338 18 346 2.81e-118 348
MS.gene060286.t1 MTR_7g081020 50.492 305 129 3 6 290 1 303 2.41e-102 305
MS.gene060286.t1 MTR_8g074930 53.704 270 123 1 95 364 1 268 6.53e-99 295
MS.gene060286.t1 MTR_0015s0140 54.297 256 114 1 84 339 48 300 6.55e-98 295
MS.gene060286.t1 MTR_3g032660 46.875 320 159 5 27 339 33 348 1.92e-93 286
MS.gene060286.t1 MTR_3g032700 44.868 341 177 5 27 360 33 369 3.23e-93 286
MS.gene060286.t1 MTR_7g090550 47.516 322 156 6 27 339 35 352 9.83e-90 277
MS.gene060286.t1 MTR_7g090530 47.040 321 157 6 27 339 34 349 3.23e-86 268
MS.gene060286.t1 MTR_3g032590 43.571 280 148 4 87 360 100 375 2.86e-69 224
MS.gene060286.t1 MTR_4g113480 37.126 334 193 7 20 347 34 356 5.79e-62 208
MS.gene060286.t1 MTR_4g113345 33.127 323 177 9 23 339 22 311 1.06e-45 160
MS.gene060286.t1 MTR_7g090540 44.444 180 79 4 163 337 17 180 1.75e-38 139
MS.gene060286.t1 MTR_7g060770 31.208 298 172 10 61 338 263 547 1.20e-36 140
MS.gene060286.t1 MTR_4g113210 32.463 268 139 8 20 271 16 257 1.41e-36 134
MS.gene060286.t1 MTR_4g119830 31.274 259 156 7 98 344 246 494 1.71e-31 125
MS.gene060286.t1 MTR_4g076560 30.137 292 180 7 61 338 202 483 4.07e-31 124
MS.gene060286.t1 MTR_1g085530 29.085 306 154 5 99 346 592 892 1.51e-30 124
MS.gene060286.t1 MTR_4g063905 31.769 277 147 7 98 338 426 696 6.02e-29 119
MS.gene060286.t1 MTR_4g098650 29.412 306 159 6 95 348 478 778 2.04e-28 117
MS.gene060286.t1 MTR_3g464650 29.930 284 135 9 61 340 94 317 5.42e-26 106
MS.gene060286.t1 MTR_1g115570 29.412 289 133 9 61 346 126 346 1.53e-24 103
MS.gene060286.t1 MTR_3g464700 32.301 226 105 6 61 283 118 298 2.69e-24 102
MS.gene060286.t1 MTR_5g071550 28.269 283 141 8 61 340 154 377 1.92e-23 100
MS.gene060286.t1 MTR_1g014640 29.617 287 133 9 63 344 110 332 3.33e-21 93.6
MS.gene060286.t1 MTR_1g013400 29.617 287 133 9 63 344 110 332 3.33e-21 93.6
MS.gene060286.t1 MTR_3g068200 26.453 344 190 13 29 345 78 385 1.41e-20 92.8
MS.gene060286.t1 MTR_4g125810 30.453 243 113 8 57 286 249 448 1.79e-20 93.2
MS.gene060286.t1 MTR_3g091060 28.163 245 125 7 46 283 106 306 2.03e-20 92.0
MS.gene060286.t1 MTR_3g104710 28.947 304 153 12 54 337 279 539 4.88e-20 92.0
MS.gene060286.t1 MTR_3g105730 29.252 294 140 10 63 352 67 296 5.91e-20 89.7
MS.gene060286.t1 MTR_3g105730 29.252 294 140 10 63 352 45 274 6.12e-20 89.0
MS.gene060286.t1 MTR_5g071550 30.093 216 107 5 61 275 154 326 1.05e-19 89.7
MS.gene060286.t1 MTR_1g086350 29.316 307 139 11 54 343 112 357 1.86e-19 89.4
MS.gene060286.t1 MTR_1g086350 29.316 307 139 11 54 343 96 341 1.94e-19 89.4
MS.gene060286.t1 MTR_2g033000 28.819 288 151 9 54 337 94 331 4.38e-19 88.2
MS.gene060286.t1 MTR_5g024340 27.986 293 135 13 57 339 121 347 1.96e-17 83.2
MS.gene060286.t1 MTR_1g086350 28.283 297 136 10 64 343 19 255 1.99e-17 82.0
MS.gene060286.t1 MTR_4g094208 28.322 286 139 10 36 306 32 266 4.29e-17 80.9
MS.gene060286.t1 MTR_3g105880 26.316 285 132 9 46 284 35 287 4.72e-17 81.6
MS.gene060286.t1 MTR_4g007440 27.113 284 131 9 46 284 35 287 4.97e-17 82.0
MS.gene060286.t1 MTR_3g105880 26.316 285 132 9 46 284 35 287 8.28e-17 81.3
MS.gene060286.t1 MTR_5g080680 28.017 232 124 6 61 284 132 328 1.02e-16 81.3
MS.gene060286.t1 MTR_4g123080 30.068 296 137 15 54 337 89 326 1.83e-16 80.5
MS.gene060286.t1 MTR_4g123080 30.068 296 137 15 54 337 107 344 2.55e-16 80.1
MS.gene060286.t1 MTR_2g078760 27.500 280 130 10 64 337 41 253 1.94e-15 75.9
MS.gene060286.t1 MTR_2g078760 27.500 280 130 10 64 337 120 332 2.24e-15 76.6
MS.gene060286.t1 MTR_1g014190 27.341 267 126 7 58 284 49 287 3.40e-15 76.6
MS.gene060286.t1 MTR_1g014190 27.715 267 125 7 58 284 87 325 4.85e-15 76.3
MS.gene060286.t1 MTR_7g093240 28.378 148 72 3 142 289 6 119 4.97e-15 71.6
MS.gene060286.t1 MTR_5g063940 25.974 308 155 11 36 335 37 279 5.94e-15 74.7
MS.gene060286.t1 MTR_1g050520 27.273 297 144 11 52 337 409 644 7.08e-15 76.6
MS.gene060286.t1 MTR_1g028300 28.390 236 127 5 61 294 145 340 9.45e-15 75.5
MS.gene060286.t1 MTR_2g008850 26.667 285 142 11 54 335 12 232 1.66e-14 72.8
MS.gene060286.t1 MTR_4g094542 25.952 289 139 11 31 300 116 348 2.19e-14 74.3
MS.gene060286.t1 MTR_2g008850 25.733 307 157 12 36 335 36 278 2.36e-14 73.2
MS.gene060286.t1 MTR_8g463130 25.965 285 155 11 28 302 1 239 9.68e-14 70.9
MS.gene060286.t1 MTR_8g463130 25.965 285 155 11 28 302 29 267 1.19e-13 71.2
MS.gene060286.t1 MTR_5g063940 26.374 273 138 8 64 335 22 232 1.59e-13 70.1
MS.gene060286.t1 MTR_3g491830 27.755 245 137 7 60 284 88 312 2.70e-13 70.9
MS.gene060286.t1 MTR_3g074610 26.433 314 146 13 36 335 37 279 7.70e-13 68.6
MS.gene060286.t1 MTR_4g037470 24.405 336 191 13 54 360 89 390 3.18e-12 68.2
MS.gene060286.t1 MTR_4g037470 24.405 336 191 13 54 360 98 399 3.33e-12 68.2
MS.gene060286.t1 MTR_8g102550 26.222 225 118 6 61 278 152 335 3.80e-12 67.8
MS.gene060286.t1 MTR_6g081850 24.138 319 165 11 46 340 56 321 1.06e-11 65.9
MS.gene060286.t1 MTR_2g435550 26.073 303 155 13 62 337 79 339 1.40e-11 65.5
MS.gene060286.t1 MTR_2g435550 26.073 303 155 13 62 337 93 353 1.45e-11 65.5
MS.gene060286.t1 MTR_7g021530 33.129 163 85 6 142 301 204 345 1.57e-11 65.9
MS.gene060286.t1 MTR_7g021530 33.129 163 85 6 142 301 154 295 1.70e-11 65.5
MS.gene060286.t1 MTR_7g021530 33.129 163 85 6 142 301 245 386 1.70e-11 65.9
MS.gene060286.t1 MTR_7g112490 25.949 316 150 16 61 337 91 361 6.39e-11 63.5
MS.gene060286.t1 MTR_7g112490 25.949 316 150 16 61 337 109 379 8.44e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060286.t1 AT4G33920 70.712 379 109 2 1 378 1 378 0.0 549
MS.gene060286.t1 AT4G33920 70.169 295 86 2 85 378 2 295 2.90e-147 419
MS.gene060286.t1 AT3G51370 54.648 355 148 3 1 344 8 360 4.49e-140 404
MS.gene060286.t1 AT3G51370 54.648 355 148 3 1 344 8 360 4.49e-140 404
MS.gene060286.t1 AT5G66080 56.196 347 141 2 16 353 28 372 1.06e-139 403
MS.gene060286.t1 AT3G12620 57.270 337 134 2 17 345 31 365 2.29e-135 392
MS.gene060286.t1 AT3G12620 57.270 337 134 2 17 345 31 365 2.29e-135 392
MS.gene060286.t1 AT4G33920 71.053 266 75 2 114 378 1 265 9.04e-134 383
MS.gene060286.t1 AT3G55050 57.447 329 130 2 17 337 32 358 2.62e-133 387
MS.gene060286.t1 AT3G55050 57.447 329 130 2 17 337 32 358 2.62e-133 387
MS.gene060286.t1 AT4G38520 53.955 354 153 2 17 362 29 380 1.26e-131 383
MS.gene060286.t1 AT4G38520 53.955 354 153 2 17 362 29 380 1.26e-131 383
MS.gene060286.t1 AT5G06750 57.053 319 136 1 22 339 43 361 3.70e-129 376
MS.gene060286.t1 AT5G06750 57.053 319 136 1 22 339 43 361 3.70e-129 376
MS.gene060286.t1 AT3G17090 54.985 331 144 3 22 351 45 371 5.36e-128 373
MS.gene060286.t1 AT5G02760 53.799 329 140 3 20 340 23 347 3.75e-117 345
MS.gene060286.t1 AT3G51370 55.797 276 114 3 74 344 3 275 2.56e-109 322
MS.gene060286.t1 AT5G66080 56.767 266 113 1 88 353 5 268 6.03e-109 321
MS.gene060286.t1 AT5G06750 57.200 250 106 1 91 339 30 279 3.25e-98 295
MS.gene060286.t1 AT3G17090 52.963 270 123 2 22 290 45 311 3.62e-98 295
MS.gene060286.t1 AT3G16560 33.858 254 154 5 98 345 245 490 2.62e-34 132
MS.gene060286.t1 AT3G16560 33.858 254 154 5 98 345 245 490 2.62e-34 132
MS.gene060286.t1 AT3G16560 33.858 254 154 5 98 345 245 490 2.62e-34 132
MS.gene060286.t1 AT5G02400 31.884 276 148 6 98 338 396 666 5.79e-33 130
MS.gene060286.t1 AT2G46920 28.479 309 157 5 99 348 543 846 2.78e-32 129
MS.gene060286.t1 AT2G46920 28.479 309 157 5 99 348 543 846 2.78e-32 129
MS.gene060286.t1 AT2G46920 28.479 309 157 5 99 348 543 846 2.78e-32 129
MS.gene060286.t1 AT2G46920 28.479 309 157 5 99 348 543 846 2.78e-32 129
MS.gene060286.t1 AT2G35350 28.328 293 157 5 93 337 483 770 8.94e-32 127
MS.gene060286.t1 AT2G28890 31.317 281 150 6 96 338 371 646 3.54e-31 125
MS.gene060286.t1 AT3G09400 32.090 268 144 7 100 338 384 642 1.23e-30 124
MS.gene060286.t1 AT1G07630 31.159 276 150 5 98 338 384 654 1.37e-30 123
MS.gene060286.t1 AT2G40180 30.142 282 135 9 61 337 161 385 4.15e-28 114
MS.gene060286.t1 AT1G67820 31.461 267 128 7 60 316 114 335 6.90e-28 113
MS.gene060286.t1 AT1G67820 31.461 267 128 7 60 316 150 371 9.81e-28 114
MS.gene060286.t1 AT3G16560 33.641 217 128 4 98 306 245 453 5.48e-26 108
MS.gene060286.t1 AT1G07160 29.000 300 148 9 46 337 134 376 9.08e-26 107
MS.gene060286.t1 AT2G30020 30.605 281 133 8 63 339 172 394 4.30e-23 100
MS.gene060286.t1 AT3G09400 29.851 268 145 10 100 337 384 638 7.09e-22 97.8
MS.gene060286.t1 AT4G31750 31.048 248 121 8 63 305 66 268 1.60e-21 94.4
MS.gene060286.t1 AT4G31750 31.048 248 121 8 63 305 66 268 1.61e-21 94.4
MS.gene060286.t1 AT4G31750 31.048 248 121 8 63 305 66 268 1.61e-21 94.4
MS.gene060286.t1 AT1G43900 29.893 281 129 10 61 338 154 369 9.44e-21 93.2
MS.gene060286.t1 AT1G07430 28.520 277 145 9 25 284 114 354 3.56e-20 92.0
MS.gene060286.t1 AT2G33700 28.767 292 139 11 51 335 113 342 4.68e-19 88.2
MS.gene060286.t1 AT2G29380 27.124 306 156 12 54 337 100 360 3.44e-18 85.5
MS.gene060286.t1 AT5G10740 27.536 276 133 8 63 335 66 277 9.01e-18 84.3
MS.gene060286.t1 AT5G10740 27.536 276 133 8 63 335 66 277 9.01e-18 84.3
MS.gene060286.t1 AT1G48040 29.730 296 152 10 54 343 110 355 2.33e-17 83.2
MS.gene060286.t1 AT3G62260 30.315 254 137 10 57 304 24 243 3.12e-17 81.6
MS.gene060286.t1 AT5G53140 26.531 294 148 10 63 353 134 362 5.67e-17 82.4
MS.gene060286.t1 AT5G53140 26.531 294 148 10 63 353 134 362 5.67e-17 82.4
MS.gene060286.t1 AT2G25620 26.408 284 154 11 57 337 125 356 6.17e-17 82.0
MS.gene060286.t1 AT2G25620 26.408 284 154 11 57 337 125 356 6.17e-17 82.0
MS.gene060286.t1 AT4G26080 29.153 295 153 13 58 337 169 422 8.06e-17 82.0
MS.gene060286.t1 AT3G62260 30.315 254 137 10 57 304 113 332 1.00e-16 81.3
MS.gene060286.t1 AT5G51760 28.099 242 121 9 61 283 114 321 1.06e-16 81.3
MS.gene060286.t1 AT3G62260 30.315 254 137 10 57 304 114 333 1.19e-16 81.3
MS.gene060286.t1 AT5G24940 27.536 276 133 8 63 335 66 277 1.32e-16 81.3
MS.gene060286.t1 AT5G51760 28.099 242 121 9 61 283 144 351 1.36e-16 81.3
MS.gene060286.t1 AT5G59220 28.333 240 125 8 54 284 141 342 1.51e-16 80.9
MS.gene060286.t1 AT1G18030 26.990 289 146 10 43 303 83 334 2.13e-15 77.0
MS.gene060286.t1 AT4G31860 25.818 275 120 11 58 284 49 287 3.52e-15 75.9
MS.gene060286.t1 AT4G31860 25.818 275 120 11 58 284 49 287 6.72e-15 75.9
MS.gene060286.t1 AT3G51470 25.168 298 150 10 47 335 48 281 7.33e-15 75.1
MS.gene060286.t1 AT3G51470 25.168 298 150 10 47 335 92 325 1.11e-14 75.1
MS.gene060286.t1 AT1G78200 25.649 308 159 10 36 335 35 280 1.89e-14 73.6
MS.gene060286.t1 AT1G78200 25.649 308 159 10 36 335 35 280 1.89e-14 73.6
MS.gene060286.t1 AT1G78200 25.649 308 159 10 36 335 35 280 1.89e-14 73.6
MS.gene060286.t1 AT3G16800 27.483 302 150 14 60 337 92 348 2.11e-14 74.3
MS.gene060286.t1 AT3G16800 27.483 302 150 14 60 337 92 348 2.11e-14 74.3
MS.gene060286.t1 AT3G16800 27.483 302 150 14 60 337 92 348 2.11e-14 74.3
MS.gene060286.t1 AT5G57050 25.597 293 167 11 58 337 157 411 2.93e-14 74.3
MS.gene060286.t1 AT5G57050 25.597 293 167 11 58 337 117 371 3.07e-14 73.9
MS.gene060286.t1 AT4G08260 26.715 277 116 8 63 339 21 210 4.59e-14 71.2
MS.gene060286.t1 AT2G40860 28.369 282 137 10 63 337 425 648 9.86e-14 73.2
MS.gene060286.t1 AT2G40860 28.369 282 137 10 63 337 327 550 9.88e-14 73.2
MS.gene060286.t1 AT4G28400 27.309 249 129 10 64 306 48 250 1.82e-13 70.5
MS.gene060286.t1 AT3G16800 28.571 252 124 11 98 337 46 253 1.86e-13 70.1
MS.gene060286.t1 AT3G16800 28.571 252 124 11 98 337 46 253 1.86e-13 70.1
MS.gene060286.t1 AT4G31860 26.236 263 110 11 58 272 49 275 2.59e-13 70.1
MS.gene060286.t1 AT4G28400 27.309 249 129 10 64 306 70 272 2.67e-13 70.1
MS.gene060286.t1 AT2G25070 26.277 274 118 12 59 284 50 287 3.82e-13 70.5
MS.gene060286.t1 AT2G25070 26.277 274 118 12 59 284 50 287 3.82e-13 70.5
MS.gene060286.t1 AT2G40860 27.823 248 136 7 63 303 425 636 4.69e-13 70.9
MS.gene060286.t1 AT5G26010 26.441 295 174 10 52 337 64 324 5.09e-13 69.7
MS.gene060286.t1 AT1G22280 26.855 283 153 11 36 306 36 276 9.31e-13 68.6
MS.gene060286.t1 AT1G03590 26.361 349 186 14 54 371 83 391 2.11e-12 68.6
MS.gene060286.t1 AT1G18030 27.200 250 130 9 43 273 83 299 2.18e-12 67.8
MS.gene060286.t1 AT5G01700 26.531 294 169 11 61 339 29 290 2.36e-12 67.8
MS.gene060286.t1 AT5G01700 26.531 294 169 11 61 339 78 339 2.57e-12 68.2
MS.gene060286.t1 AT1G78200 26.996 263 138 11 54 306 9 227 3.34e-12 66.2
MS.gene060286.t1 AT1G78200 26.996 263 138 11 54 306 9 227 3.34e-12 66.2
MS.gene060286.t1 AT1G17550 25.472 318 158 13 56 337 227 501 8.19e-12 67.0
MS.gene060286.t1 AT1G17550 25.472 318 158 13 56 337 227 501 8.19e-12 67.0
MS.gene060286.t1 AT4G27800 27.711 249 136 9 58 284 85 311 1.08e-11 65.9
MS.gene060286.t1 AT4G27800 27.711 249 136 9 58 284 85 311 1.23e-11 65.9
MS.gene060286.t1 AT1G72770 25.472 318 168 10 48 337 225 501 1.38e-11 66.2
MS.gene060286.t1 AT1G72770 25.472 318 168 10 48 337 225 501 1.38e-11 66.2
MS.gene060286.t1 AT1G72770 25.472 318 168 10 48 337 225 501 1.38e-11 66.2
MS.gene060286.t1 AT2G34740 23.642 313 156 10 36 335 90 332 1.59e-11 65.5
MS.gene060286.t1 AT4G27800 27.106 273 155 9 58 308 85 335 1.93e-11 65.5

Find 84 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGGGATCATGTTGTCTTCT+TGG 0.195703 1.2:+79603065 MS.gene060286:CDS
AGATACTGACTGTGTAAATA+AGG 0.264924 1.2:-79602458 None:intergenic
ACTAGTAAGAGCTGCTCTTC+AGG 0.291775 1.2:+79604846 MS.gene060286:CDS
GATGGTTCAGCTGTCATTAC+TGG 0.293354 1.2:-79604598 None:intergenic
CTGAACCATCAATCATCATT+AGG 0.315695 1.2:+79604611 MS.gene060286:CDS
GACGCAATCTGAGGACTAAT+TGG 0.330240 1.2:-79603041 None:intergenic
GGTGACTCTAGAGTTGTTCT+TGG 0.332422 1.2:+79603125 MS.gene060286:CDS
TATTTGCATCAGATGGCCTT+TGG 0.354565 1.2:+79604662 MS.gene060286:CDS
TTGACAAATCTAGAAGCTTC+AGG 0.361584 1.2:-79602422 None:intergenic
TTTAGAGAAAATATATCAAC+AGG 0.367089 1.2:-79605036 None:intergenic
ATTTGCATCAGATGGCCTTT+GGG 0.407098 1.2:+79604663 MS.gene060286:CDS
ACTGGACGCTTCAAAGGAAT+AGG 0.409207 1.2:-79604580 None:intergenic
ATGGGATCTCTGTAGAAATC+TGG 0.417500 1.2:-79604538 None:intergenic
CATAAGACACTCACAGCTCT+TGG 0.419984 1.2:-79604730 None:intergenic
ACCACAATGTGTGAATCATC+AGG 0.421762 1.2:-79603254 None:intergenic
AGCTCCCTAATGATGATTGA+TGG 0.423360 1.2:-79604616 None:intergenic
TGGTTTATAGCCGTGGTGTT+TGG 0.426614 1.2:+79603273 MS.gene060286:CDS
TGAACCATCAATCATCATTA+GGG 0.429934 1.2:+79604612 MS.gene060286:CDS
TTCTTAATATTTGCATCAGA+TGG 0.445890 1.2:+79604655 MS.gene060286:CDS
TTTCTCAATTGCCGTTGCTC+AGG 0.469493 1.2:+79602316 MS.gene060286:CDS
TTGCAGGTGTCTAGATCTAT+TGG 0.477815 1.2:+79604496 MS.gene060286:intron
GATACTGACTGTGTAAATAA+GGG 0.479550 1.2:-79602457 None:intergenic
AAGAGCATGCTTGGTTCAGT+TGG 0.486918 1.2:+79605075 MS.gene060286:CDS
GAATCTGAGAAGAGCATGCT+TGG 0.489881 1.2:+79605066 MS.gene060286:CDS
AGCAGCTCTTACTAGTCTCT+TGG 0.490227 1.2:-79604839 None:intergenic
TGTGCTGTATGTTGCCAACC+TGG 0.496291 1.2:+79603103 MS.gene060286:CDS
GACTTGAAACCTCACGCCTC+CGG 0.498145 1.2:+79602290 MS.gene060286:CDS
GTCCTCCTCGGTCTTACTAA+AGG 0.500830 1.2:-79602991 None:intergenic
TTTATAGCCGTGGTGTTTGG+AGG 0.501496 1.2:+79603276 MS.gene060286:CDS
CCGTGGTGTTTGGAGGATCA+AGG 0.503122 1.2:+79603283 MS.gene060286:CDS
GTCATTACTGGACGCTTCAA+AGG 0.503992 1.2:-79604586 None:intergenic
CACATTGTGGTTTATAGCCG+TGG 0.506241 1.2:+79603266 MS.gene060286:CDS
GAGGATCAAGGGCATCATAC+AGG 0.507950 1.2:+79603295 MS.gene060286:CDS
GTGCCTCTGACTTTCTCCTC+TGG 0.508030 1.2:+79602261 MS.gene060286:CDS
CCCTGATGATTCACACATTG+TGG 0.513642 1.2:+79603253 MS.gene060286:CDS
ACTCTAGAGTTGTTCTTGGT+AGG 0.521401 1.2:+79603129 MS.gene060286:CDS
ACCTATGTCGGTGTTTATGA+TGG 0.523773 1.2:+79602389 MS.gene060286:CDS
GTAGAATTTGCCTCTGAACA+AGG 0.528771 1.2:+79602939 MS.gene060286:intron
TAGTCCTCAGATTGCGTCTG+TGG 0.530528 1.2:+79603046 MS.gene060286:CDS
CATGCTCTTCTCAGATTCAT+CGG 0.531284 1.2:-79605061 None:intergenic
TCTCCTTCCGCCACCTATGT+CGG 0.544351 1.2:+79602377 MS.gene060286:CDS
GGAGGCTGTGCGCTTGTCAA+CGG 0.547101 1.2:+79603181 MS.gene060286:CDS
TAGAATTTGCCTCTGAACAA+GGG 0.551971 1.2:+79602940 MS.gene060286:intron
CGTGGTGTTTGGAGGATCAA+GGG 0.557389 1.2:+79603284 MS.gene060286:CDS
AGTCAGAGGCACCACGGCGA+CGG 0.560686 1.2:-79602250 None:intergenic
GACATAGGTGGCGGAAGGAG+AGG 0.580248 1.2:-79602375 None:intergenic
GAACAAGAATTCTTCTGTGG+AGG 0.580777 1.2:+79603163 MS.gene060286:CDS
AACTCTAGAGTCACCCAGGT+TGG 0.586854 1.2:-79603117 None:intergenic
CATCACTTAATTGTTCCCAA+AGG 0.592457 1.2:-79604678 None:intergenic
GGATCATAATGTAGCTGATG+AGG 0.594161 1.2:+79603202 MS.gene060286:CDS
TGAGAACAAGAATTCTTCTG+TGG 0.594227 1.2:+79603160 MS.gene060286:CDS
TGTGTAAATAAGGGAAAAGA+CGG 0.595113 1.2:-79602448 None:intergenic
GTGATCTATCTTGATCAGCA+TGG 0.596846 1.2:+79604961 MS.gene060286:CDS
ACCATCATAAACACCGACAT+AGG 0.601759 1.2:-79602390 None:intergenic
GAGTTTAAGCAAACTGCTGT+TGG 0.603813 1.2:+79605000 MS.gene060286:CDS
CGATAACAGTGATATCGTCA+TGG 0.607261 1.2:-79604939 None:intergenic
GTCGGTGTTTATGATGGTCA+CGG 0.608831 1.2:+79602395 MS.gene060286:CDS
GGAGAAAGTCAGAGGCACCA+CGG 0.613215 1.2:-79602256 None:intergenic
GTTTCAAGTCTGTGTGCCAG+AGG 0.616689 1.2:-79602277 None:intergenic
ATCATAAACACCGACATAGG+TGG 0.616793 1.2:-79602387 None:intergenic
AACGGCAATTGAGAAATCAC+CGG 0.616907 1.2:-79602309 None:intergenic
CCACAATGTGTGAATCATCA+GGG 0.617006 1.2:-79603253 None:intergenic
AGTCCTCAGATTGCGTCTGT+GGG 0.621414 1.2:+79603047 MS.gene060286:CDS
GAGAAATCACCGGAGGCGTG+AGG 0.628233 1.2:-79602299 None:intergenic
GTGCCAGAGGAGAAAGTCAG+AGG 0.628468 1.2:-79602264 None:intergenic
GTGCTGTATGTTGCCAACCT+GGG 0.633140 1.2:+79603104 MS.gene060286:CDS
AGAATTTGCCTCTGAACAAG+GGG 0.635083 1.2:+79602941 MS.gene060286:intron
GACATAAAGAAAATTGACAA+AGG 0.637095 1.2:+79604901 MS.gene060286:CDS
ATGTAGCTGATGAGGAAGTG+AGG 0.643026 1.2:+79603210 MS.gene060286:CDS
ATAAACACCGACATAGGTGG+CGG 0.644245 1.2:-79602384 None:intergenic
ACACCGACATAGGTGGCGGA+AGG 0.644257 1.2:-79602380 None:intergenic
AGAGTAATTAGCCTGAGCAA+CGG 0.654865 1.2:-79602327 None:intergenic
GATCCCACAGACGCAATCTG+AGG 0.664939 1.2:-79603050 None:intergenic
CAGCATGGAAGCTCTTCTAG+TGG 0.667037 1.2:+79604976 MS.gene060286:CDS
TAGAGAAAATATATCAACAG+GGG 0.669880 1.2:-79605034 None:intergenic
GAACAACTCTAGAGTCACCC+AGG 0.676212 1.2:-79603121 None:intergenic
AAAGGCCTTTAGTAAGACCG+AGG 0.694902 1.2:+79602986 MS.gene060286:CDS
GGCAATTGAGAAATCACCGG+AGG 0.706892 1.2:-79602306 None:intergenic
GGCCTTTAGTAAGACCGAGG+AGG 0.716209 1.2:+79602989 MS.gene060286:CDS
TTAGAGAAAATATATCAACA+GGG 0.731235 1.2:-79605035 None:intergenic
CAATGTGTGAATCATCAGGG+TGG 0.738705 1.2:-79603250 None:intergenic
GAATTTGCCTCTGAACAAGG+GGG 0.739786 1.2:+79602942 MS.gene060286:intron
CCTTGATCCTCCAAACACCA+CGG 0.748053 1.2:-79603283 None:intergenic
GGTGTTTATGATGGTCACGG+TGG 0.807193 1.2:+79602398 MS.gene060286:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATT+TGG - chr1.2:79604214-79604195 None:intergenic 0.0%
!!! ATTTTTAAAATTAATTAAAA+GGG - chr1.2:79603795-79603814 None:intergenic 0.0%
!!! TATTTTTAAAATTAATTAAA+AGG - chr1.2:79603796-79603815 None:intergenic 0.0%
!! AACTAAATAAAATAAAACTA+CGG + chr1.2:79603829-79603848 MS.gene060286:intron 10.0%
!!! AGTTTTTTTTTTTATTAGTT+TGG + chr1.2:79602525-79602544 MS.gene060286:intron 10.0%
!! TAAATAATAACTACAAGTAA+TGG - chr1.2:79602489-79602508 None:intergenic 15.0%
!! ACAAAAAATGTACATAATGA+AGG - chr1.2:79603507-79603526 None:intergenic 20.0%
!! ACAAATATAATATATACCGT+TGG + chr1.2:79603319-79603338 MS.gene060286:intron 20.0%
!! ATCAGCAAAAAAAAAAACAT+AGG - chr1.2:79602876-79602895 None:intergenic 20.0%
!! CAAAAAAAAAAACATAGGTT+CGG - chr1.2:79602871-79602890 None:intergenic 20.0%
!! TATTAAGATCCAATTTGATT+TGG + chr1.2:79602604-79602623 MS.gene060286:intron 20.0%
!! TCAAAAAATCCAAATCAAAT+TGG - chr1.2:79602616-79602635 None:intergenic 20.0%
!! TTAGAGAAAATATATCAACA+GGG - chr1.2:79605038-79605057 None:intergenic 20.0%
!! TTTAGAGAAAATATATCAAC+AGG - chr1.2:79605039-79605058 None:intergenic 20.0%
! GACATAAAGAAAATTGACAA+AGG + chr1.2:79604901-79604920 MS.gene060286:CDS 25.0%
! TAACAAAGTACAAGCTTAAA+GGG - chr1.2:79604082-79604101 None:intergenic 25.0%
! TAATTGCAAATAAAAACCAC+CGG - chr1.2:79603433-79603452 None:intergenic 25.0%
! TAGAGAAAATATATCAACAG+GGG - chr1.2:79605037-79605056 None:intergenic 25.0%
! TTAACAAAGTACAAGCTTAA+AGG - chr1.2:79604083-79604102 None:intergenic 25.0%
! TTCTTAATATTTGCATCAGA+TGG + chr1.2:79604655-79604674 MS.gene060286:CDS 25.0%
!! AGAGTTTCAATTTTCTTACA+TGG + chr1.2:79604778-79604797 MS.gene060286:intron 25.0%
!! TCGTTATATTTTCTGTCAAT+TGG + chr1.2:79602798-79602817 MS.gene060286:intron 25.0%
!!! GTTTATTTTTGCCGATAAAT+GGG + chr1.2:79604437-79604456 MS.gene060286:intron 25.0%
!!! TGCTACTTTTTTTTTGTGAA+GGG - chr1.2:79603903-79603922 None:intergenic 25.0%
!!! TTTATTTTTGCCGATAAATG+GGG + chr1.2:79604438-79604457 MS.gene060286:intron 25.0%
ATTTCCAAATTGCCGAAAAA+TGG - chr1.2:79604560-79604579 None:intergenic 30.0%
CTTTGTTAATAAGAGACCAA+CGG - chr1.2:79603338-79603357 None:intergenic 30.0%
GGAGTTTGAAAACAATAGAT+AGG - chr1.2:79604017-79604036 None:intergenic 30.0%
GTTTGAAAACAATAGATAGG+CGG - chr1.2:79604014-79604033 None:intergenic 30.0%
TACTAAAATTAGTCCCACAT+CGG - chr1.2:79604040-79604059 None:intergenic 30.0%
TGAACCATCAATCATCATTA+GGG + chr1.2:79604612-79604631 MS.gene060286:CDS 30.0%
TGTGTAAATAAGGGAAAAGA+CGG - chr1.2:79602451-79602470 None:intergenic 30.0%
TTTCCAAATTGCCGAAAAAT+GGG - chr1.2:79604559-79604578 None:intergenic 30.0%
! AGATACTGACTGTGTAAATA+AGG - chr1.2:79602461-79602480 None:intergenic 30.0%
! GATACTGACTGTGTAAATAA+GGG - chr1.2:79602460-79602479 None:intergenic 30.0%
! TGTATATAGTTCGATTCGAT+TGG - chr1.2:79604236-79604255 None:intergenic 30.0%
!! ACATGTCAATGTGTTTTTGT+TGG + chr1.2:79602746-79602765 MS.gene060286:intron 30.0%
!!! CAGTTTTTTGTTTATGTTGC+AGG + chr1.2:79604480-79604499 MS.gene060286:intron 30.0%
!!! GGTTTATTTTTGCCGATAAA+TGG + chr1.2:79604436-79604455 MS.gene060286:intron 30.0%
!!! GTGCTACTTTTTTTTTGTGA+AGG - chr1.2:79603904-79603923 None:intergenic 30.0%
ACACATTGACATGTCAACAT+CGG - chr1.2:79602740-79602759 None:intergenic 35.0%
ACTAAAATTAGTCCCACATC+GGG - chr1.2:79604039-79604058 None:intergenic 35.0%
CATCACTTAATTGTTCCCAA+AGG - chr1.2:79604681-79604700 None:intergenic 35.0%
CTGAACCATCAATCATCATT+AGG + chr1.2:79604611-79604630 MS.gene060286:CDS 35.0%
GATAAGTATCTCGTTGATCT+TGG - chr1.2:79604328-79604347 None:intergenic 35.0%
GTCAGCAGATGTGATAAAAA+AGG + chr1.2:79602968-79602987 MS.gene060286:CDS 35.0%
TACCAACATGTTTGTGATTG+TGG + chr1.2:79603396-79603415 MS.gene060286:intron 35.0%
TAGAATTTGCCTCTGAACAA+GGG + chr1.2:79602940-79602959 MS.gene060286:intron 35.0%
TCGAACTCGAGCTAAAAAAA+AGG - chr1.2:79603684-79603703 None:intergenic 35.0%
TGAGAACAAGAATTCTTCTG+TGG + chr1.2:79603160-79603179 MS.gene060286:CDS 35.0%
TTGACAAATCTAGAAGCTTC+AGG - chr1.2:79602425-79602444 None:intergenic 35.0%
! GATTGTGGTGTAATTTTGTC+CGG + chr1.2:79603411-79603430 MS.gene060286:intron 35.0%
! TTTAAGGTTCACGAACAACT+CGG + chr1.2:79603708-79603727 MS.gene060286:intron 35.0%
!! TCTACAGAGATCCCATTTTT+CGG + chr1.2:79604545-79604564 MS.gene060286:CDS 35.0%
!! TTATTAGTTTGGTGCAGCAT+TGG + chr1.2:79602536-79602555 MS.gene060286:intron 35.0%
!!! GAACTATTTTCGAGTTGGTT+CGG + chr1.2:79604360-79604379 MS.gene060286:intron 35.0%
!!! GTTTCGAACTATTTTCGAGT+TGG + chr1.2:79604355-79604374 MS.gene060286:intron 35.0%
AAAACAATAGATAGGCGGAG+TGG - chr1.2:79604009-79604028 None:intergenic 40.0%
AAATGAGCTGAACTTGAGCT+GGG - chr1.2:79604295-79604314 None:intergenic 40.0%
AACGGCAATTGAGAAATCAC+CGG - chr1.2:79602312-79602331 None:intergenic 40.0%
AATAAAACTACGGACCATGC+TGG + chr1.2:79603839-79603858 MS.gene060286:intron 40.0%
ACCACAATGTGTGAATCATC+AGG - chr1.2:79603257-79603276 None:intergenic 40.0%
ACCATCATAAACACCGACAT+AGG - chr1.2:79602393-79602412 None:intergenic 40.0%
AGAATTTGCCTCTGAACAAG+GGG + chr1.2:79602941-79602960 MS.gene060286:intron 40.0%
AGCACCTCTAACTGATAAGT+AGG - chr1.2:79604398-79604417 None:intergenic 40.0%
AGCTCCCTAATGATGATTGA+TGG - chr1.2:79604619-79604638 None:intergenic 40.0%
ATCATAAACACCGACATAGG+TGG - chr1.2:79602390-79602409 None:intergenic 40.0%
ATGGGATCTCTGTAGAAATC+TGG - chr1.2:79604541-79604560 None:intergenic 40.0%
ATTTGCATCAGATGGCCTTT+GGG + chr1.2:79604663-79604682 MS.gene060286:CDS 40.0%
CAAATGCAAAAAGTCCTCCT+CGG - chr1.2:79603006-79603025 None:intergenic 40.0%
CACCACAATCACAAACATGT+TGG - chr1.2:79603401-79603420 None:intergenic 40.0%
CATGCTCTTCTCAGATTCAT+CGG - chr1.2:79605064-79605083 None:intergenic 40.0%
CCACAATGTGTGAATCATCA+GGG - chr1.2:79603256-79603275 None:intergenic 40.0%
CGACTCGATAAGAATTGACT+CGG + chr1.2:79603629-79603648 MS.gene060286:intron 40.0%
CGATAACAGTGATATCGTCA+TGG - chr1.2:79604942-79604961 None:intergenic 40.0%
CTAAAATTAGTCCCACATCG+GGG - chr1.2:79604038-79604057 None:intergenic 40.0%
GAACAAGAATTCTTCTGTGG+AGG + chr1.2:79603163-79603182 MS.gene060286:CDS 40.0%
GACGGAAGCAAAAATCAAGA+GGG - chr1.2:79602235-79602254 None:intergenic 40.0%
GAGTCGAGCTCAAATAAGTT+CGG - chr1.2:79603610-79603629 None:intergenic 40.0%
GAGTTTAAGCAAACTGCTGT+TGG + chr1.2:79605000-79605019 MS.gene060286:CDS 40.0%
GCACCTCTAACTGATAAGTA+GGG - chr1.2:79604397-79604416 None:intergenic 40.0%
GGATCATAATGTAGCTGATG+AGG + chr1.2:79603202-79603221 MS.gene060286:CDS 40.0%
GTAGAATTTGCCTCTGAACA+AGG + chr1.2:79602939-79602958 MS.gene060286:intron 40.0%
GTGATCTATCTTGATCAGCA+TGG + chr1.2:79604961-79604980 MS.gene060286:CDS 40.0%
TATTTGCATCAGATGGCCTT+TGG + chr1.2:79604662-79604681 MS.gene060286:CDS 40.0%
TTGCAGGTGTCTAGATCTAT+TGG + chr1.2:79604496-79604515 MS.gene060286:intron 40.0%
TTTGCCGATAAATGGGGTAA+GGG + chr1.2:79604444-79604463 MS.gene060286:intron 40.0%
! ACCTATGTCGGTGTTTATGA+TGG + chr1.2:79602389-79602408 MS.gene060286:CDS 40.0%
! AGAGTAATTAGCCTGAGCAA+CGG - chr1.2:79602330-79602349 None:intergenic 40.0%
! TTTTGCCGATAAATGGGGTA+AGG + chr1.2:79604443-79604462 MS.gene060286:intron 40.0%
!! ACTCTAGAGTTGTTCTTGGT+AGG + chr1.2:79603129-79603148 MS.gene060286:CDS 40.0%
!! GATCCCATTTTTCGGCAATT+TGG + chr1.2:79604553-79604572 MS.gene060286:CDS 40.0%
!!! TTGTTTTTGTTCCACGTGCA+GGG + chr1.2:79604811-79604830 MS.gene060286:intron 40.0%
!!! TTTGTTTTTGTTCCACGTGC+AGG + chr1.2:79604810-79604829 MS.gene060286:intron 40.0%
AAAGGCCTTTAGTAAGACCG+AGG + chr1.2:79602986-79603005 MS.gene060286:CDS 45.0%
ACACCAACACCTCTTATCGA+AGG + chr1.2:79602677-79602696 MS.gene060286:intron 45.0%
ACTAGTAAGAGCTGCTCTTC+AGG + chr1.2:79604846-79604865 MS.gene060286:CDS 45.0%
ACTGGACGCTTCAAAGGAAT+AGG - chr1.2:79604583-79604602 None:intergenic 45.0%
ATAAACACCGACATAGGTGG+CGG - chr1.2:79602387-79602406 None:intergenic 45.0%
ATGTAGCTGATGAGGAAGTG+AGG + chr1.2:79603210-79603229 MS.gene060286:CDS 45.0%
CAAATGAGCTGAACTTGAGC+TGG - chr1.2:79604296-79604315 None:intergenic 45.0%
CAATGTGTGAATCATCAGGG+TGG - chr1.2:79603253-79603272 None:intergenic 45.0%
CACATTGTGGTTTATAGCCG+TGG + chr1.2:79603266-79603285 MS.gene060286:CDS 45.0%
CAGCCCTACTTATCAGTTAG+AGG + chr1.2:79604391-79604410 MS.gene060286:intron 45.0%
CAGCTCAAGTTCAGCTCATT+TGG + chr1.2:79604294-79604313 MS.gene060286:intron 45.0%
CATAAGACACTCACAGCTCT+TGG - chr1.2:79604733-79604752 None:intergenic 45.0%
CCCTGATGATTCACACATTG+TGG + chr1.2:79603253-79603272 MS.gene060286:CDS 45.0%
CGACGGAAGCAAAAATCAAG+AGG - chr1.2:79602236-79602255 None:intergenic 45.0%
CTCTAACTGATAAGTAGGGC+TGG - chr1.2:79604393-79604412 None:intergenic 45.0%
GAATTTGCCTCTGAACAAGG+GGG + chr1.2:79602942-79602961 MS.gene060286:intron 45.0%
GACGCAATCTGAGGACTAAT+TGG - chr1.2:79603044-79603063 None:intergenic 45.0%
GAGGCAAGCTTATACAATGC+TGG - chr1.2:79603552-79603571 None:intergenic 45.0%
GATGGTTCAGCTGTCATTAC+TGG - chr1.2:79604601-79604620 None:intergenic 45.0%
GCTACCCTTACCCCATTTAT+CGG - chr1.2:79604451-79604470 None:intergenic 45.0%
GGCGGAGTGGATATAAAAAG+AGG - chr1.2:79603996-79604015 None:intergenic 45.0%
GTCATTACTGGACGCTTCAA+AGG - chr1.2:79604589-79604608 None:intergenic 45.0%
GTGGGATCATGTTGTCTTCT+TGG + chr1.2:79603065-79603084 MS.gene060286:CDS 45.0%
TGGTTTATAGCCGTGGTGTT+TGG + chr1.2:79603273-79603292 MS.gene060286:CDS 45.0%
TTTATAGCCGTGGTGTTTGG+AGG + chr1.2:79603276-79603295 MS.gene060286:CDS 45.0%
TTTCTCAATTGCCGTTGCTC+AGG + chr1.2:79602316-79602335 MS.gene060286:CDS 45.0%
! AAGAGCATGCTTGGTTCAGT+TGG + chr1.2:79605075-79605094 MS.gene060286:CDS 45.0%
! AGCAGCTCTTACTAGTCTCT+TGG - chr1.2:79604842-79604861 None:intergenic 45.0%
! CGAGGAGGACTTTTTGCATT+TGG + chr1.2:79603004-79603023 MS.gene060286:CDS 45.0%
! GAATCTGAGAAGAGCATGCT+TGG + chr1.2:79605066-79605085 MS.gene060286:CDS 45.0%
! GTCGGTGTTTATGATGGTCA+CGG + chr1.2:79602395-79602414 MS.gene060286:CDS 45.0%
! GTTTTCAAACTCCCCGATGT+GGG + chr1.2:79604024-79604043 MS.gene060286:intron 45.0%
! TGTGGTGTAATTTTGTCCGG+TGG + chr1.2:79603414-79603433 MS.gene060286:intron 45.0%
! TGTTTTCAAACTCCCCGATG+TGG + chr1.2:79604023-79604042 MS.gene060286:intron 45.0%
!! ATCAGTTAGAGGTGCTGCAA+GGG + chr1.2:79604402-79604421 MS.gene060286:intron 45.0%
!! GGTGACTCTAGAGTTGTTCT+TGG + chr1.2:79603125-79603144 MS.gene060286:CDS 45.0%
!! TATCAGTTAGAGGTGCTGCA+AGG + chr1.2:79604401-79604420 MS.gene060286:intron 45.0%
AAAACTACGGACCATGCTGG+CGG + chr1.2:79603842-79603861 MS.gene060286:intron 50.0%
AGCTTGCCTCGCTTATCAGT+AGG + chr1.2:79603562-79603581 MS.gene060286:intron 50.0%
AGTCCTCAGATTGCGTCTGT+GGG + chr1.2:79603047-79603066 MS.gene060286:CDS 50.0%
CAGCATGGAAGCTCTTCTAG+TGG + chr1.2:79604976-79604995 MS.gene060286:CDS 50.0%
CCTTGATCCTCCAAACACCA+CGG - chr1.2:79603286-79603305 None:intergenic 50.0%
CGTGGTGTTTGGAGGATCAA+GGG + chr1.2:79603284-79603303 MS.gene060286:CDS 50.0%
GCTTGCCTCGCTTATCAGTA+GGG + chr1.2:79603563-79603582 MS.gene060286:intron 50.0%
GGCAATTGAGAAATCACCGG+AGG - chr1.2:79602309-79602328 None:intergenic 50.0%
GGTGTTTATGATGGTCACGG+TGG + chr1.2:79602398-79602417 MS.gene060286:CDS 50.0%
GGTTCACGAACAACTCGGTT+CGG + chr1.2:79603713-79603732 MS.gene060286:intron 50.0%
GTCCTCCTCGGTCTTACTAA+AGG - chr1.2:79602994-79603013 None:intergenic 50.0%
GTGCTGTATGTTGCCAACCT+GGG + chr1.2:79603104-79603123 MS.gene060286:CDS 50.0%
TAGTCCTCAGATTGCGTCTG+TGG + chr1.2:79603046-79603065 MS.gene060286:CDS 50.0%
TGACAATCCCCCTTGTTCAG+AGG - chr1.2:79602952-79602971 None:intergenic 50.0%
TGTGCTGTATGTTGCCAACC+TGG + chr1.2:79603103-79603122 MS.gene060286:CDS 50.0%
! ACGCCTTCGATAAGAGGTGT+TGG - chr1.2:79602683-79602702 None:intergenic 50.0%
! GCTCGAGTTCGACTCGTTTA+AGG + chr1.2:79603692-79603711 MS.gene060286:intron 50.0%
! GTTTCAAGTCTGTGTGCCAG+AGG - chr1.2:79602280-79602299 None:intergenic 50.0%
! TAGTCTTAAGACCGCCAGCA+TGG - chr1.2:79603856-79603875 None:intergenic 50.0%
!! AACTCTAGAGTCACCCAGGT+TGG - chr1.2:79603120-79603139 None:intergenic 50.0%
!! GAACAACTCTAGAGTCACCC+AGG - chr1.2:79603124-79603143 None:intergenic 50.0%
!! GAGGATCAAGGGCATCATAC+AGG + chr1.2:79603295-79603314 MS.gene060286:CDS 50.0%
!! TCAGTTAGAGGTGCTGCAAG+GGG + chr1.2:79604403-79604422 MS.gene060286:intron 50.0%
CCAGACACGCCTTCGATAAG+AGG - chr1.2:79602689-79602708 None:intergenic 55.0%
CCGTGGTGTTTGGAGGATCA+AGG + chr1.2:79603283-79603302 MS.gene060286:CDS 55.0%
GACTTGAAACCTCACGCCTC+CGG + chr1.2:79602290-79602309 MS.gene060286:CDS 55.0%
GATCCCACAGACGCAATCTG+AGG - chr1.2:79603053-79603072 None:intergenic 55.0%
GGCCTTTAGTAAGACCGAGG+AGG + chr1.2:79602989-79603008 MS.gene060286:CDS 55.0%
GTGCCAGAGGAGAAAGTCAG+AGG - chr1.2:79602267-79602286 None:intergenic 55.0%
GTGCCTCTGACTTTCTCCTC+TGG + chr1.2:79602261-79602280 MS.gene060286:CDS 55.0%
TCCAGCCCTACTGATAAGCG+AGG - chr1.2:79603571-79603590 None:intergenic 55.0%
TCTCCTTCCGCCACCTATGT+CGG + chr1.2:79602377-79602396 MS.gene060286:CDS 55.0%
TCTTGGCAATTCCCTGCACG+TGG - chr1.2:79604825-79604844 None:intergenic 55.0%
! CCTCTTATCGAAGGCGTGTC+TGG + chr1.2:79602686-79602705 MS.gene060286:intron 55.0%
! GATTTTTGCTTCCGTCGCCG+TGG + chr1.2:79602239-79602258 MS.gene060286:CDS 55.0%
! TCGAAGGCGTGTCTGGTGTT+TGG + chr1.2:79602693-79602712 MS.gene060286:intron 55.0%
!! ACAACTCGGTTCGGCTCGTT+AGG + chr1.2:79603722-79603741 MS.gene060286:intron 55.0%
!! CAGTTAGAGGTGCTGCAAGG+GGG + chr1.2:79604404-79604423 MS.gene060286:intron 55.0%
!! GGAGAAAGTCAGAGGCACCA+CGG - chr1.2:79602259-79602278 None:intergenic 55.0%
GCCTCGCTTATCAGTAGGGC+TGG + chr1.2:79603567-79603586 MS.gene060286:intron 60.0%
GCTGCAAGGGGGAAATGGTC+TGG + chr1.2:79604415-79604434 MS.gene060286:intron 60.0%
GGAGGCTGTGCGCTTGTCAA+CGG + chr1.2:79603181-79603200 MS.gene060286:CDS 60.0%
! GAGAAATCACCGGAGGCGTG+AGG - chr1.2:79602302-79602321 None:intergenic 60.0%
!! ACACCGACATAGGTGGCGGA+AGG - chr1.2:79602383-79602402 None:intergenic 60.0%
!! GACATAGGTGGCGGAAGGAG+AGG - chr1.2:79602378-79602397 None:intergenic 60.0%
!! GAGGTGCTGCAAGGGGGAAA+TGG + chr1.2:79604410-79604429 MS.gene060286:intron 60.0%
!! AGTCAGAGGCACCACGGCGA+CGG - chr1.2:79602253-79602272 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 79602212 79605101 79602212 ID=MS.gene060286
chr1.2 mRNA 79602212 79605101 79602212 ID=MS.gene060286.t1;Parent=MS.gene060286
chr1.2 exon 79602212 79602470 79602212 ID=MS.gene060286.t1.exon1;Parent=MS.gene060286.t1
chr1.2 CDS 79602212 79602470 79602212 ID=cds.MS.gene060286.t1;Parent=MS.gene060286.t1
chr1.2 exon 79602943 79603316 79602943 ID=MS.gene060286.t1.exon2;Parent=MS.gene060286.t1
chr1.2 CDS 79602943 79603316 79602943 ID=cds.MS.gene060286.t1;Parent=MS.gene060286.t1
chr1.2 exon 79604502 79604738 79604502 ID=MS.gene060286.t1.exon3;Parent=MS.gene060286.t1
chr1.2 CDS 79604502 79604738 79604502 ID=cds.MS.gene060286.t1;Parent=MS.gene060286.t1
chr1.2 exon 79604832 79605101 79604832 ID=MS.gene060286.t1.exon4;Parent=MS.gene060286.t1
chr1.2 CDS 79604832 79605101 79604832 ID=cds.MS.gene060286.t1;Parent=MS.gene060286.t1
Gene Sequence

>MS.gene060286

ATGCTGCGTTTGTGCTTAAGCCCTCTTGATTTTTGCTTCCGTCGCCGTGGTGCCTCTGACTTTCTCCTCTGGCACACAGACTTGAAACCTCACGCCTCCGGTGATTTCTCAATTGCCGTTGCTCAGGCTAATTACTCTCTTGAAGATCAAAGTCAAGTCTTCACCTCTCCTTCCGCCACCTATGTCGGTGTTTATGATGGTCACGGTGGTCCTGAAGCTTCTAGATTTGTCAACAACCGTCTTTTCCCTTATTTACACAGTCAGTATCTATCTTCCATTACTTGTAGTTATTATTTACATGTGTTTGACTACTAGTTTTTTTTTTTATTAGTTTGGTGCAGCATTGGAACAAATTAAGTAGTAATCAACTCAATTATATTTGTTGTGTTTTGTATTAAGATCCAATTTGATTTGGATTTTTTGAAATATAATTGTTTAAGTTGTGCTGTACTTAACAACTCTATGACACCAACACCTCTTATCGAAGGCGTGTCTGGTGTTTGGCACATGTTTCTCAAATTATTACCGATGTTGACATGTCAATGTGTTTTTGTTGGTGTTTCATAGCTTGAGAATAGAAGATGCATCGTTATATTTTCTGTCAATTGGTTGATTGTGATGCATATTATTAAATTTATAAACTGTTGACATCATTACCGAACCTATGTTTTTTTTTTTGCTGATGTTATTTGTTTTAATAATGCTAACTTGTATTTTATTTTGATTTGTAGAATTTGCCTCTGAACAAGGGGGATTGTCAGCAGATGTGATAAAAAAGGCCTTTAGTAAGACCGAGGAGGACTTTTTGCATTTGGTTAAGTTGTCGTTGCCAATTAGTCCTCAGATTGCGTCTGTGGGATCATGTTGTCTTCTTGGTGCAATTTCTAACAATGTGCTGTATGTTGCCAACCTGGGTGACTCTAGAGTTGTTCTTGGTAGGAAGTATCTTGAGAACAAGAATTCTTCTGTGGAGGCTGTGCGCTTGTCAACGGATCATAATGTAGCTGATGAGGAAGTGAGGAGAGAAGTTGAAGCTCTCCACCCTGATGATTCACACATTGTGGTTTATAGCCGTGGTGTTTGGAGGATCAAGGGCATCATACAGGTACAAATATAATATATACCGTTGGTCTCTTATTAACAAAGTTATGCTCACTATCAAATTGTGTTGAATATTGTATACATACCAACATGTTTGTGATTGTGGTGTAATTTTGTCCGGTGGTTTTTATTTGCAATTACAACTTTTGAGTAAAATCAGTTCATCTATTTTATGTGTTTCTTCTTTCAATCCTTCATTATGTACATTTTTTGTTTATTATAAACATGATGTATTTCCAGCATTGTATAAGCTTGCCTCGCTTATCAGTAGGGCTGGAAATGAGTCGAGTCGAACCGAACTTATTTGAGCTCGACTCGACTCGATAAGAATTGACTCGGCTCGAAACTCGACTCGAGTTCGATACGAACCTTTTTTTTAGCTCGAGTTCGACTCGTTTAAGGTTCACGAACAACTCGGTTCGGCTCGTTAGGTTCAACTCATTTGACAAAATTTTTTTTTTTGTCAAATATATAGCTTACCCTTTTAATTAATTTTAAAAATAAAAACAAAAATTTAACTAAATAAAATAAAACTACGGACCATGCTGGCGGTCTTAAGACTACTTAAGAAAAAAGTAGCACTTTTTCCCTTCACAAAAAAAAAGTAGCACTTCATAATTAAAAGAAAACTATAACAGAACATACACTGTAGCAGCTTCGTTAATGTAACGAAGCGCACTCCTCTTTTTATATCCACTCCGCCTATCTATTGTTTTCAAACTCCCCGATGTGGGACTAATTTTAGTACACATGTGTTTAGTTAAAACCCTTTAAGCTTGTACTTTGTTAATTTTTACTAAACTAACACACACCAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTATCGAGTCAGCTCATGAACCAATCGAATCGAACTATATACAACTCAAGTTCAGCTCATTTATTTAACGAACTTAATTCCCAGCTCAAGTTCAGCTCATTTGGTTCATGAACCAAGATCAACGAGATACTTATCGAATCGAGTTTCGAACTATTTTCGAGTTGGTTCGGTTCATTGCCAGCCCTACTTATCAGTTAGAGGTGCTGCAAGGGGGAAATGGTCTGGTTTATTTTTGCCGATAAATGGGGTAAGGGTAGCTGATCTTAACAGTTTTTTGTTTATGTTGCAGGTGTCTAGATCTATTGGTGATGTATATTTGAAGAGACCAGATTTCTACAGAGATCCCATTTTTCGGCAATTTGGAAATCCTATTCCTTTGAAGCGTCCAGTAATGACAGCTGAACCATCAATCATCATTAGGGAGCTTGAGTCAGATGATTTATTCTTAATATTTGCATCAGATGGCCTTTGGGAACAATTAAGTGATGAAGCAGCAGTTGATATTGTTTTCAAATATCCAAGAGCTGTGAGTGTCTTATGTTACTTGTGAGCTGCACAGAGTAATAGAGTTTCAATTTTCTTACATGGTGTTGTGTTTTTGTTTTTGTTCCACGTGCAGGGAATTGCCAAGAGACTAGTAAGAGCTGCTCTTCAGGAAGCTGCAAAGAAAAGAGAGATGAGATATGCTGACATAAAGAAAATTGACAAAGGAATTAGAAGACACTTCCATGACGATATCACTGTTATCGTGATCTATCTTGATCAGCATGGAAGCTCTTCTAGTGGTGAGTTTAAGCAAACTGCTGTTGGTTATACAACTGCCCCTGTTGATATATTTTCTCTAAATGCCGATGAATCTGAGAAGAGCATGCTTGGTTCAGTTGGCTAA
Protein sequence

>MS.gene060286.t1

MLRLCLSPLDFCFRRRGASDFLLWHTDLKPHASGDFSIAVAQANYSLEDQSQVFTSPSATYVGVYDGHGGPEASRFVNNRLFPYLHKFASEQGGLSADVIKKAFSKTEEDFLHLVKLSLPISPQIASVGSCCLLGAISNNVLYVANLGDSRVVLGRKYLENKNSSVEAVRLSTDHNVADEEVRREVEALHPDDSHIVVYSRGVWRIKGIIQVSRSIGDVYLKRPDFYRDPIFRQFGNPIPLKRPVMTAEPSIIIRELESDDLFLIFASDGLWEQLSDEAAVDIVFKYPRAGIAKRLVRAALQEAAKKREMRYADIKKIDKGIRRHFHDDITVIVIYLDQHGSSSSGEFKQTAVGYTTAPVDIFSLNADESEKSMLGSVG