Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29281.t1 | XP_003626362.1 | 98 | 152 | 3 | 0 | 1 | 152 | 1 | 152 | 2.20E-80 | 308.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29281.t1 | Q02610 | 92.1 | 152 | 12 | 0 | 1 | 152 | 1 | 152 | 5.1e-78 | 291.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29281.t1 | B7FGV9 | 98.0 | 152 | 3 | 0 | 1 | 152 | 1 | 152 | 1.6e-80 | 308.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene29281 | MS.gene011492 | PPI |
| MS.gene29281 | MS.gene62862 | PPI |
| MS.gene29281 | MS.gene71901 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29281.t1 | MTR_7g114240 | 98.026 | 152 | 3 | 0 | 1 | 152 | 1 | 152 | 8.28e-105 | 296 |
| MS.gene29281.t1 | MTR_6g029200 | 70.199 | 151 | 44 | 1 | 2 | 151 | 8 | 158 | 1.56e-69 | 207 |
| MS.gene29281.t1 | MTR_7g114240 | 96.117 | 103 | 4 | 0 | 1 | 103 | 1 | 103 | 1.87e-68 | 203 |
| MS.gene29281.t1 | MTR_4g057240 | 69.014 | 142 | 43 | 1 | 9 | 150 | 63 | 203 | 1.75e-67 | 203 |
| MS.gene29281.t1 | MTR_6g029200 | 68.000 | 150 | 39 | 1 | 2 | 151 | 8 | 148 | 2.02e-65 | 196 |
| MS.gene29281.t1 | MTR_4g101820 | 34.234 | 111 | 65 | 2 | 13 | 123 | 165 | 267 | 1.08e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29281.t1 | AT1G08830 | 83.553 | 152 | 25 | 0 | 1 | 152 | 1 | 152 | 3.09e-88 | 254 |
| MS.gene29281.t1 | AT1G08830 | 83.553 | 152 | 25 | 0 | 1 | 152 | 1 | 152 | 3.09e-88 | 254 |
| MS.gene29281.t1 | AT2G28190 | 68.919 | 148 | 46 | 0 | 3 | 150 | 66 | 213 | 6.72e-71 | 213 |
| MS.gene29281.t1 | AT5G18100 | 64.667 | 150 | 53 | 0 | 2 | 151 | 8 | 157 | 3.17e-67 | 201 |
| MS.gene29281.t1 | AT5G18100 | 61.417 | 127 | 49 | 0 | 2 | 128 | 8 | 134 | 1.46e-52 | 163 |
| MS.gene29281.t1 | AT1G12520 | 32.143 | 112 | 68 | 2 | 13 | 124 | 36 | 139 | 3.00e-12 | 61.6 |
| MS.gene29281.t1 | AT1G12520 | 32.143 | 112 | 68 | 2 | 13 | 124 | 81 | 184 | 4.21e-12 | 62.0 |
| MS.gene29281.t1 | AT1G12520 | 32.143 | 112 | 68 | 2 | 13 | 124 | 172 | 275 | 1.20e-11 | 61.6 |
Find 58 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGTTTGTTGTAGGTATTAT+TGG | 0.169884 | 7.2:-3149487 | MS.gene29281:intron |
| ATTCGACATGCTGGTGATTT+AGG | 0.204339 | 7.2:-3150711 | MS.gene29281:CDS |
| GGCTTCCATATCCATGCCTT+GGG | 0.292332 | 7.2:-3151091 | MS.gene29281:CDS |
| ACTGTGACCGGAAATCTTTC+TGG | 0.298064 | 7.2:-3151133 | MS.gene29281:CDS |
| GCCCTTCCTATGATTGAGTT+TGG | 0.330134 | 7.2:+3150186 | None:intergenic |
| CTTAAGACCAGAAAGATTTC+CGG | 0.340182 | 7.2:+3151126 | None:intergenic |
| GCACCGTGCTCCTTACCATT+AGG | 0.399615 | 7.2:+3150747 | None:intergenic |
| GTGAAGGCTGTGGCAGTTCT+TGG | 0.413587 | 7.2:-3151314 | MS.gene29281:CDS |
| GGTCTTAAGCCTGGCCTCCA+TGG | 0.414866 | 7.2:-3151112 | MS.gene29281:CDS |
| TGGCTTCCATATCCATGCCT+TGG | 0.423080 | 7.2:-3151092 | MS.gene29281:CDS |
| ACTGGACCAAACTCAATCAT+AGG | 0.429060 | 7.2:-3150192 | MS.gene29281:CDS |
| GCATGTCGAATCTCATCCTC+AGG | 0.433796 | 7.2:+3150723 | None:intergenic |
| CTTCACCATTACTGACAATC+AGG | 0.444656 | 7.2:-3150525 | MS.gene29281:intron |
| ACAAATGGTTGCATGTCAAC+TGG | 0.450246 | 7.2:-3151061 | MS.gene29281:intron |
| GGACCACATTTCAATCCTAA+TGG | 0.461674 | 7.2:-3150762 | MS.gene29281:CDS |
| GTACCTTTCCCAAGATCATC+AGG | 0.463574 | 7.2:+3150144 | None:intergenic |
| CATGCCGATCCTGATGATCT+TGG | 0.469419 | 7.2:-3150153 | MS.gene29281:CDS |
| AGCTTCTCTCAGGAGGGAAA+TGG | 0.473090 | 7.2:-3151263 | MS.gene29281:intron |
| ATGCCGATCCTGATGATCTT+GGG | 0.478164 | 7.2:-3150152 | MS.gene29281:CDS |
| AATGTCACTGTCGGCGATGA+TGG | 0.482153 | 7.2:-3150687 | MS.gene29281:intron |
| TGGTACTATTAGCTTCTCTC+AGG | 0.486454 | 7.2:-3151273 | MS.gene29281:CDS |
| AGTTGACATGCAACCATTTG+TGG | 0.493212 | 7.2:+3151063 | None:intergenic |
| AATCTTTCTGGTCTTAAGCC+TGG | 0.494092 | 7.2:-3151121 | MS.gene29281:CDS |
| AGATTTCCGGTCACAGTGGT+TGG | 0.506019 | 7.2:+3151139 | None:intergenic |
| CATGAGCTTAGCAAGACTAC+TGG | 0.517405 | 7.2:-3149825 | MS.gene29281:CDS |
| ATATGGAAGCCATGGAGGCC+AGG | 0.527324 | 7.2:+3151103 | None:intergenic |
| AGGCATGGATATGGAAGCCA+TGG | 0.529289 | 7.2:+3151095 | None:intergenic |
| AGCAAGACTACTGGAAATGC+TGG | 0.533538 | 7.2:-3149816 | MS.gene29281:CDS |
| GCAGGTCCAACCACTGTGAC+CGG | 0.534164 | 7.2:-3151145 | MS.gene29281:intron |
| GTAGGTATTATTGGCTTGCA+AGG | 0.540422 | 7.2:-3149478 | MS.gene29281:intron |
| TGTTCACAGATCCCTCTCAC+TGG | 0.549506 | 7.2:-3150210 | MS.gene29281:intron |
| GGTAACAGTAATGATGTCTC+TGG | 0.553348 | 7.2:-3151293 | MS.gene29281:CDS |
| ACATTTCAATCCTAATGGTA+AGG | 0.554760 | 7.2:-3150757 | MS.gene29281:CDS |
| TACTATTAGCTTCTCTCAGG+AGG | 0.557121 | 7.2:-3151270 | MS.gene29281:CDS |
| GACCAAACTCAATCATAGGA+AGG | 0.559020 | 7.2:-3150188 | MS.gene29281:CDS |
| GTCAGTAATGGTGAAGCTTG+CGG | 0.567650 | 7.2:+3150532 | None:intergenic |
| ATTGAGTTTGGTCCAGTGAG+AGG | 0.575707 | 7.2:+3150198 | None:intergenic |
| TTGAGTTTGGTCCAGTGAGA+GGG | 0.579337 | 7.2:+3150199 | None:intergenic |
| GATTTAGGAAATGTCACTGT+CGG | 0.580192 | 7.2:-3150696 | MS.gene29281:CDS |
| TTGAACAATGGTGAAGGCTG+TGG | 0.590785 | 7.2:-3151324 | None:intergenic |
| ACATACCTGATTGTCAGTAA+TGG | 0.594183 | 7.2:+3150520 | None:intergenic |
| GAGGATGAGATTCGACATGC+TGG | 0.598972 | 7.2:-3150720 | MS.gene29281:CDS |
| ATCACATTGAACAATGGTGA+AGG | 0.610273 | 7.2:-3151330 | None:intergenic |
| GATCCTGATGATCTTGGGAA+AGG | 0.612525 | 7.2:-3150147 | MS.gene29281:intron |
| GCTTCCATATCCATGCCTTG+GGG | 0.616548 | 7.2:-3151090 | MS.gene29281:CDS |
| AATCCTAATGGTAAGGAGCA+CGG | 0.625283 | 7.2:-3150750 | MS.gene29281:CDS |
| ACCAAACTCAATCATAGGAA+GGG | 0.632037 | 7.2:-3150187 | MS.gene29281:CDS |
| CATGGATATGGAAGCCATGG+AGG | 0.632624 | 7.2:+3151098 | None:intergenic |
| ACTATTAGCTTCTCTCAGGA+GGG | 0.637590 | 7.2:-3151269 | MS.gene29281:CDS |
| CATGTCGAATCTCATCCTCA+GGG | 0.638518 | 7.2:+3150724 | None:intergenic |
| TTTCCCAAGATCATCAGGAT+CGG | 0.641905 | 7.2:+3150149 | None:intergenic |
| TTACCATTAGGATTGAAATG+TGG | 0.656736 | 7.2:+3150759 | None:intergenic |
| CTTCCATATCCATGCCTTGG+GGG | 0.658207 | 7.2:-3151089 | MS.gene29281:CDS |
| TAAGGAGCACGGTGCCCCTG+AGG | 0.679963 | 7.2:-3150739 | MS.gene29281:CDS |
| AAGACTACTGGAAATGCTGG+TGG | 0.685336 | 7.2:-3149813 | MS.gene29281:CDS |
| AGAAAGATTTCCGGTCACAG+TGG | 0.704388 | 7.2:+3151135 | None:intergenic |
| ATGTCGAATCTCATCCTCAG+GGG | 0.738664 | 7.2:+3150725 | None:intergenic |
| GCTGGTGGCAGAGTAGCTTG+TGG | 0.784017 | 7.2:-3149798 | MS.gene29281:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCTAATGAATTATTCTA+GGG | - | chr7.2:3150320-3150339 | MS.gene29281:intron | 15.0% |
| !! | TAACCTATAAAACATATAAA+AGG | + | chr7.2:3149888-3149907 | None:intergenic | 15.0% |
| !!! | GTTTGATTTTAACTTTAAAA+TGG | - | chr7.2:3150210-3150229 | MS.gene29281:intron | 15.0% |
| !!! | TATCCTTTTATATGTTTTAT+AGG | - | chr7.2:3149882-3149901 | MS.gene29281:intron | 15.0% |
| !! | AGATAACAATTAGAAAATGA+AGG | + | chr7.2:3151259-3151278 | None:intergenic | 20.0% |
| !! | ATTATTCTAAATTGACAACA+AGG | - | chr7.2:3150525-3150544 | MS.gene29281:intron | 20.0% |
| !! | CACAAAAAAATAAAATCAAG+TGG | + | chr7.2:3150166-3150185 | None:intergenic | 20.0% |
| !! | CATTTCTAATGAATTATTCT+AGG | - | chr7.2:3150319-3150338 | MS.gene29281:intron | 20.0% |
| !! | GATAACAATTAGAAAATGAA+GGG | + | chr7.2:3151258-3151277 | None:intergenic | 20.0% |
| !! | TTAAATAAATAATAGAAGCG+CGG | + | chr7.2:3149970-3149989 | None:intergenic | 20.0% |
| !!! | AAGAAAATGTTTCCATTTTT+GGG | + | chr7.2:3150384-3150403 | None:intergenic | 20.0% |
| !!! | GTTTCATTTTTAATATCTTG+AGG | - | chr7.2:3149775-3149794 | MS.gene29281:intron | 20.0% |
| !!! | TAAGAAAATGTTTCCATTTT+TGG | + | chr7.2:3150385-3150404 | None:intergenic | 20.0% |
| !!! | TGATTTTATTTTTTTGTGAC+CGG | - | chr7.2:3150168-3150187 | MS.gene29281:CDS | 20.0% |
| !!! | TGTTGTCAATTTAGAATAAT+GGG | + | chr7.2:3150525-3150544 | None:intergenic | 20.0% |
| !!! | TTGTTGTCAATTTAGAATAA+TGG | + | chr7.2:3150526-3150545 | None:intergenic | 20.0% |
| ! | ATGAAACAAATTATTGTCCA+AGG | + | chr7.2:3149762-3149781 | None:intergenic | 25.0% |
| ! | TGAAAACTGAATCTTGAATT+TGG | + | chr7.2:3151234-3151253 | None:intergenic | 25.0% |
| !! | CTTTTGAATCTGTTTAATAC+AGG | - | chr7.2:3150008-3150027 | MS.gene29281:intron | 25.0% |
| !! | TGTTTTCAGTAACAAATTCA+AGG | + | chr7.2:3151173-3151192 | None:intergenic | 25.0% |
| !! | TTTTGCATAACATTTCATCT+CGG | - | chr7.2:3150925-3150944 | MS.gene29281:intron | 25.0% |
| !!! | AACCTTAATTTTTTGCATCA+CGG | + | chr7.2:3151086-3151105 | None:intergenic | 25.0% |
| !!! | AAGCACATTTTAAAGATAAC+CGG | + | chr7.2:3150190-3150209 | None:intergenic | 25.0% |
| !!! | TTTTAGTTATCTTCTTTTCC+AGG | - | chr7.2:3150140-3150159 | MS.gene29281:intron | 25.0% |
| !!! | TTTTTTAAACATTGACTGTG+CGG | - | chr7.2:3151047-3151066 | MS.gene29281:intron | 25.0% |
| AAAAATAAAATCAAGTGGCC+TGG | + | chr7.2:3150161-3150180 | None:intergenic | 30.0% | |
| AAACAAAAACTTACTCTTCG+CGG | + | chr7.2:3149577-3149596 | None:intergenic | 30.0% | |
| AACTTCCCTCAACAATAAAT+GGG | + | chr7.2:3150706-3150725 | None:intergenic | 30.0% | |
| AAGGTTCAAATGATCTTTAG+AGG | - | chr7.2:3151100-3151119 | MS.gene29281:CDS | 30.0% | |
| AATAATACCTACAACAAACG+GGG | + | chr7.2:3151305-3151324 | None:intergenic | 30.0% | |
| AATTGTCCCATTTATTGTTG+AGG | - | chr7.2:3150697-3150716 | MS.gene29281:CDS | 30.0% | |
| ACATTTCAATCCTAATGGTA+AGG | - | chr7.2:3150034-3150053 | MS.gene29281:intron | 30.0% | |
| AGATTCATTCAAGCAAATTG+AGG | + | chr7.2:3149835-3149854 | None:intergenic | 30.0% | |
| ATTGTCCCATTTATTGTTGA+GGG | - | chr7.2:3150698-3150717 | MS.gene29281:CDS | 30.0% | |
| ATTTGTGACGATCACTTTAT+AGG | + | chr7.2:3150791-3150810 | None:intergenic | 30.0% | |
| CAATAATACCTACAACAAAC+GGG | + | chr7.2:3151306-3151325 | None:intergenic | 30.0% | |
| CCAATAATACCTACAACAAA+CGG | + | chr7.2:3151307-3151326 | None:intergenic | 30.0% | |
| GATTAAAAGTTGAAACTCTC+AGG | + | chr7.2:3150551-3150570 | None:intergenic | 30.0% | |
| GATTCATTCAAGCAAATTGA+GGG | + | chr7.2:3149834-3149853 | None:intergenic | 30.0% | |
| GCAATACATGTTAATCGATT+TGG | + | chr7.2:3149619-3149638 | None:intergenic | 30.0% | |
| TAACTTCCCTCAACAATAAA+TGG | + | chr7.2:3150707-3150726 | None:intergenic | 30.0% | |
| TTACCATTAGGATTGAAATG+TGG | + | chr7.2:3150035-3150054 | None:intergenic | 30.0% | |
| TTGCTTGAATGAATCTAAAG+TGG | - | chr7.2:3149839-3149858 | MS.gene29281:intron | 30.0% | |
| !! | AACTTTAAAATGGTTTCCTC+TGG | - | chr7.2:3150220-3150239 | MS.gene29281:intron | 30.0% |
| !! | TTGGAAACACTTTTTGTGTT+TGG | - | chr7.2:3150737-3150756 | MS.gene29281:CDS | 30.0% |
| AACACAATTCATTCTCGACT+TGG | + | chr7.2:3149925-3149944 | None:intergenic | 35.0% | |
| AAGTGATCGTCACAAATTCA+AGG | - | chr7.2:3150794-3150813 | MS.gene29281:intron | 35.0% | |
| ACATACCTGATTGTCAGTAA+TGG | + | chr7.2:3150274-3150293 | None:intergenic | 35.0% | |
| ACCAAACTCAATCATAGGAA+GGG | - | chr7.2:3150604-3150623 | MS.gene29281:intron | 35.0% | |
| AGTGATCGTCACAAATTCAA+GGG | - | chr7.2:3150795-3150814 | MS.gene29281:intron | 35.0% | |
| CATGTTAAGCAACCCAAAAA+TGG | - | chr7.2:3150369-3150388 | MS.gene29281:intron | 35.0% | |
| CTTAAGACCAGAAAGATTTC+CGG | + | chr7.2:3149668-3149687 | None:intergenic | 35.0% | |
| GACTGTGCGGTATAAAAAAA+AGG | - | chr7.2:3151060-3151079 | MS.gene29281:intron | 35.0% | |
| GATTTAGGAAATGTCACTGT+CGG | - | chr7.2:3150095-3150114 | MS.gene29281:intron | 35.0% | |
| TGTCATATTATGCTAGAGCT+AGG | + | chr7.2:3150850-3150869 | None:intergenic | 35.0% | |
| ! | GGGAAGTTAACACAATCTTT+TGG | - | chr7.2:3150718-3150737 | MS.gene29281:CDS | 35.0% |
| !! | AATCATTAACTTGTGCCTTG+AGG | - | chr7.2:3150483-3150502 | MS.gene29281:intron | 35.0% |
| !! | ATCATTAACTTGTGCCTTGA+GGG | - | chr7.2:3150484-3150503 | MS.gene29281:intron | 35.0% |
| !! | CCGTTTGTTGTAGGTATTAT+TGG | - | chr7.2:3151304-3151323 | MS.gene29281:CDS | 35.0% |
| AATCCTAATGGTAAGGAGCA+CGG | - | chr7.2:3150041-3150060 | MS.gene29281:intron | 40.0% | |
| ACAAATGGTTGCATGTCAAC+TGG | - | chr7.2:3149730-3149749 | MS.gene29281:intron | 40.0% | |
| ACATGTATTGCGAATTGTGC+AGG | - | chr7.2:3149628-3149647 | MS.gene29281:intron | 40.0% | |
| ACTGGACCAAACTCAATCAT+AGG | - | chr7.2:3150599-3150618 | MS.gene29281:intron | 40.0% | |
| AGAACCTATGAGACAGTAAC+AGG | + | chr7.2:3151201-3151220 | None:intergenic | 40.0% | |
| AGTTGACATGCAACCATTTG+TGG | + | chr7.2:3149731-3149750 | None:intergenic | 40.0% | |
| ATGTCAACTGGTAAAGTCCT+TGG | - | chr7.2:3149742-3149761 | MS.gene29281:intron | 40.0% | |
| ATTCGACATGCTGGTGATTT+AGG | - | chr7.2:3150080-3150099 | MS.gene29281:intron | 40.0% | |
| CTTCACCATTACTGACAATC+AGG | - | chr7.2:3150266-3150285 | MS.gene29281:intron | 40.0% | |
| GACCAAACTCAATCATAGGA+AGG | - | chr7.2:3150603-3150622 | MS.gene29281:intron | 40.0% | |
| GGACCACATTTCAATCCTAA+TGG | - | chr7.2:3150029-3150048 | MS.gene29281:intron | 40.0% | |
| GGCCGTGATGCAAAAAATTA+AGG | - | chr7.2:3151081-3151100 | MS.gene29281:CDS | 40.0% | |
| GGTAACAGTAATGATGTCTC+TGG | - | chr7.2:3149498-3149517 | MS.gene29281:intron | 40.0% | |
| TGGTAAGTTTCAACAGCCTT+TGG | - | chr7.2:3149548-3149567 | MS.gene29281:intron | 40.0% | |
| TTGCTTAACATGTGCCCAAA+GGG | + | chr7.2:3150361-3150380 | None:intergenic | 40.0% | |
| TTGTCCTGTTACTGTCTCAT+AGG | - | chr7.2:3151194-3151213 | MS.gene29281:intron | 40.0% | |
| TTTCCCAAGATCATCAGGAT+CGG | + | chr7.2:3150645-3150664 | None:intergenic | 40.0% | |
| ! | ACTATTAGCTTCTCTCAGGA+GGG | - | chr7.2:3149522-3149541 | MS.gene29281:intron | 40.0% |
| ! | GTGAGAAGTTCTGACAATCA+TGG | - | chr7.2:3151143-3151162 | MS.gene29281:CDS | 40.0% |
| ! | TACTATTAGCTTCTCTCAGG+AGG | - | chr7.2:3149521-3149540 | MS.gene29281:intron | 40.0% |
| ! | TGGTACTATTAGCTTCTCTC+AGG | - | chr7.2:3149518-3149537 | MS.gene29281:intron | 40.0% |
| !! | AATCTTTCTGGTCTTAAGCC+TGG | - | chr7.2:3149670-3149689 | MS.gene29281:intron | 40.0% |
| !! | AATGTTAACTTGTGCCCTCA+AGG | + | chr7.2:3150501-3150520 | None:intergenic | 40.0% |
| !! | CATGTTAACTTGTGCCCTTT+GGG | - | chr7.2:3150344-3150363 | MS.gene29281:intron | 40.0% |
| !! | GTAGGTATTATTGGCTTGCA+AGG | - | chr7.2:3151313-3151332 | MS.gene29281:CDS | 40.0% |
| !! | TCATGTTAACTTGTGCCCTT+TGG | - | chr7.2:3150343-3150362 | MS.gene29281:intron | 40.0% |
| AAGACTACTGGAAATGCTGG+TGG | - | chr7.2:3150978-3150997 | MS.gene29281:intron | 45.0% | |
| ACTGTGACCGGAAATCTTTC+TGG | - | chr7.2:3149658-3149677 | MS.gene29281:intron | 45.0% | |
| AGAAAGATTTCCGGTCACAG+TGG | + | chr7.2:3149659-3149678 | None:intergenic | 45.0% | |
| AGCAAGACTACTGGAAATGC+TGG | - | chr7.2:3150975-3150994 | MS.gene29281:intron | 45.0% | |
| ATGCCGATCCTGATGATCTT+GGG | - | chr7.2:3150639-3150658 | MS.gene29281:intron | 45.0% | |
| ATGTCGAATCTCATCCTCAG+GGG | + | chr7.2:3150069-3150088 | None:intergenic | 45.0% | |
| ATTGAGTTTGGTCCAGTGAG+AGG | + | chr7.2:3150596-3150615 | None:intergenic | 45.0% | |
| CATGAGCTTAGCAAGACTAC+TGG | - | chr7.2:3150966-3150985 | MS.gene29281:intron | 45.0% | |
| CATGTCGAATCTCATCCTCA+GGG | + | chr7.2:3150070-3150089 | None:intergenic | 45.0% | |
| GATCCTGATGATCTTGGGAA+AGG | - | chr7.2:3150644-3150663 | MS.gene29281:intron | 45.0% | |
| GCCCTTCCTATGATTGAGTT+TGG | + | chr7.2:3150608-3150627 | None:intergenic | 45.0% | |
| GGCACTATTGAGTATGAGTC+AGG | - | chr7.2:3149796-3149815 | MS.gene29281:intron | 45.0% | |
| GTACCTTTCCCAAGATCATC+AGG | + | chr7.2:3150650-3150669 | None:intergenic | 45.0% | |
| GTCAGTAATGGTGAAGCTTG+CGG | + | chr7.2:3150262-3150281 | None:intergenic | 45.0% | |
| GTTGCTTAACATGTGCCCAA+AGG | + | chr7.2:3150362-3150381 | None:intergenic | 45.0% | |
| TCATCTCGGTACTGCTGTAT+AGG | - | chr7.2:3150939-3150958 | MS.gene29281:intron | 45.0% | |
| TTCCTCTGGTTGTGTAACTC+AGG | - | chr7.2:3150234-3150253 | MS.gene29281:intron | 45.0% | |
| TTCCTGAGTTACACAACCAG+AGG | + | chr7.2:3150239-3150258 | None:intergenic | 45.0% | |
| TTGAGTTTGGTCCAGTGAGA+GGG | + | chr7.2:3150595-3150614 | None:intergenic | 45.0% | |
| !! | ATCTGTTCCCCGTTTGTTGT+AGG | - | chr7.2:3151295-3151314 | MS.gene29281:CDS | 45.0% |
| AATGTCACTGTCGGCGATGA+TGG | - | chr7.2:3150104-3150123 | MS.gene29281:intron | 50.0% | |
| AGATTTCCGGTCACAGTGGT+TGG | + | chr7.2:3149655-3149674 | None:intergenic | 50.0% | |
| AGCTTCTCTCAGGAGGGAAA+TGG | - | chr7.2:3149528-3149547 | MS.gene29281:intron | 50.0% | |
| AGGCATGGATATGGAAGCCA+TGG | + | chr7.2:3149699-3149718 | None:intergenic | 50.0% | |
| CATGCCGATCCTGATGATCT+TGG | - | chr7.2:3150638-3150657 | MS.gene29281:intron | 50.0% | |
| CATGGATATGGAAGCCATGG+AGG | + | chr7.2:3149696-3149715 | None:intergenic | 50.0% | |
| CTTCCATATCCATGCCTTGG+GGG | - | chr7.2:3149702-3149721 | MS.gene29281:intron | 50.0% | |
| GAGGATGAGATTCGACATGC+TGG | - | chr7.2:3150071-3150090 | MS.gene29281:intron | 50.0% | |
| GCATGTCGAATCTCATCCTC+AGG | + | chr7.2:3150071-3150090 | None:intergenic | 50.0% | |
| GCTTCCATATCCATGCCTTG+GGG | - | chr7.2:3149701-3149720 | MS.gene29281:intron | 50.0% | |
| GGCTTCCATATCCATGCCTT+GGG | - | chr7.2:3149700-3149719 | MS.gene29281:intron | 50.0% | |
| TCTCGGTACTGCTGTATAGG+TGG | - | chr7.2:3150942-3150961 | MS.gene29281:intron | 50.0% | |
| TGGCTTCCATATCCATGCCT+TGG | - | chr7.2:3149699-3149718 | MS.gene29281:intron | 50.0% | |
| TGTTCACAGATCCCTCTCAC+TGG | - | chr7.2:3150581-3150600 | MS.gene29281:intron | 50.0% | |
| TTACTCTTCGCGGAGACCAA+AGG | + | chr7.2:3149567-3149586 | None:intergenic | 50.0% | |
| ACCATTTGTGGTGTCCCCCA+AGG | + | chr7.2:3149719-3149738 | None:intergenic | 55.0% | |
| ATATGGAAGCCATGGAGGCC+AGG | + | chr7.2:3149691-3149710 | None:intergenic | 55.0% | |
| GCACCGTGCTCCTTACCATT+AGG | + | chr7.2:3150047-3150066 | None:intergenic | 55.0% | |
| GTGAAGGCTGTGGCAGTTCT+TGG | - | chr7.2:3149477-3149496 | MS.gene29281:CDS | 55.0% | |
| TGTCCCCCAAGGCATGGATA+TGG | + | chr7.2:3149708-3149727 | None:intergenic | 55.0% | |
| ! | CACTGTCGGCGATGATGGTA+TGG | - | chr7.2:3150109-3150128 | MS.gene29281:intron | 55.0% |
| GCAGGTCCAACCACTGTGAC+CGG | - | chr7.2:3149646-3149665 | MS.gene29281:intron | 60.0% | |
| GCCTTGGGGGACACCACAAA+TGG | - | chr7.2:3149715-3149734 | MS.gene29281:intron | 60.0% | |
| GCTGGTGGCAGAGTAGCTTG+TGG | - | chr7.2:3150993-3151012 | MS.gene29281:intron | 60.0% | |
| GGTCTTAAGCCTGGCCTCCA+TGG | - | chr7.2:3149679-3149698 | MS.gene29281:intron | 60.0% | |
| TTGTGGTGTCCCCCAAGGCA+TGG | + | chr7.2:3149714-3149733 | None:intergenic | 60.0% | |
| ! | TAAGGAGCACGGTGCCCCTG+AGG | - | chr7.2:3150052-3150071 | MS.gene29281:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 3149474 | 3151339 | 3149474 | ID=MS.gene29281 |
| chr7.2 | mRNA | 3149474 | 3151339 | 3149474 | ID=MS.gene29281.t1;Parent=MS.gene29281 |
| chr7.2 | exon | 3151264 | 3151339 | 3151264 | ID=MS.gene29281.t1.exon1;Parent=MS.gene29281.t1 |
| chr7.2 | CDS | 3151264 | 3151339 | 3151264 | ID=cds.MS.gene29281.t1;Parent=MS.gene29281.t1 |
| chr7.2 | exon | 3151062 | 3151163 | 3151062 | ID=MS.gene29281.t1.exon2;Parent=MS.gene29281.t1 |
| chr7.2 | CDS | 3151062 | 3151163 | 3151062 | ID=cds.MS.gene29281.t1;Parent=MS.gene29281.t1 |
| chr7.2 | exon | 3150688 | 3150783 | 3150688 | ID=MS.gene29281.t1.exon3;Parent=MS.gene29281.t1 |
| chr7.2 | CDS | 3150688 | 3150783 | 3150688 | ID=cds.MS.gene29281.t1;Parent=MS.gene29281.t1 |
| chr7.2 | exon | 3150526 | 3150557 | 3150526 | ID=MS.gene29281.t1.exon4;Parent=MS.gene29281.t1 |
| chr7.2 | CDS | 3150526 | 3150557 | 3150526 | ID=cds.MS.gene29281.t1;Parent=MS.gene29281.t1 |
| chr7.2 | exon | 3150148 | 3150223 | 3150148 | ID=MS.gene29281.t1.exon5;Parent=MS.gene29281.t1 |
| chr7.2 | CDS | 3150148 | 3150223 | 3150148 | ID=cds.MS.gene29281.t1;Parent=MS.gene29281.t1 |
| chr7.2 | exon | 3149799 | 3149852 | 3149799 | ID=MS.gene29281.t1.exon6;Parent=MS.gene29281.t1 |
| chr7.2 | CDS | 3149799 | 3149852 | 3149799 | ID=cds.MS.gene29281.t1;Parent=MS.gene29281.t1 |
| chr7.2 | exon | 3149474 | 3149496 | 3149474 | ID=MS.gene29281.t1.exon7;Parent=MS.gene29281.t1 |
| chr7.2 | CDS | 3149474 | 3149496 | 3149474 | ID=cds.MS.gene29281.t1;Parent=MS.gene29281.t1 |
| Gene Sequence |
| Protein sequence |
