Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29323.t1 | XP_003626310.1 | 98.2 | 167 | 3 | 0 | 1 | 167 | 1 | 167 | 1.30E-89 | 339 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29323.t1 | Q53YF3 | 78.4 | 167 | 36 | 0 | 1 | 167 | 1 | 167 | 2.6e-75 | 282.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29323.t1 | Q2HTM7 | 98.2 | 167 | 3 | 0 | 1 | 167 | 1 | 167 | 9.2e-90 | 339.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene29323 | MS.gene46806 | PPI |
| MS.gene29323 | MS.gene072455 | PPI |
| MS.gene29323 | MS.gene67564 | PPI |
| MS.gene67564 | MS.gene29323 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29323.t1 | MTR_7g113740 | 98.204 | 167 | 3 | 0 | 1 | 167 | 1 | 167 | 1.20e-123 | 345 |
| MS.gene29323.t1 | MTR_3g027890 | 82.036 | 167 | 30 | 0 | 1 | 167 | 1 | 167 | 5.37e-108 | 305 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29323.t1 | AT5G27430 | 78.443 | 167 | 36 | 0 | 1 | 167 | 1 | 167 | 1.39e-101 | 289 |
| MS.gene29323.t1 | AT3G05230 | 75.449 | 167 | 41 | 0 | 1 | 167 | 1 | 167 | 5.73e-98 | 280 |
| MS.gene29323.t1 | AT3G05230 | 73.810 | 126 | 33 | 0 | 1 | 126 | 1 | 126 | 2.50e-69 | 206 |
Find 38 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTGATTCAAGGGTTTCTT+TGG | 0.249498 | 7.2:-3626949 | None:intergenic |
| AAATTCTCTACCACGCAAAT+TGG | 0.318602 | 7.2:-3627428 | None:intergenic |
| AGCATGACACTTAATATTTC+AGG | 0.320278 | 7.2:+3626746 | MS.gene29323:CDS |
| AAACTTTGCATGCTCTTTAG+AGG | 0.327720 | 7.2:-3627275 | None:intergenic |
| TGTAGGTGTTGAATATTAAT+TGG | 0.336117 | 7.2:+3625018 | MS.gene29323:intron |
| TAAATACCGTTTCATTGATC+AGG | 0.381152 | 7.2:+3627315 | MS.gene29323:CDS |
| AGAAGGAGATGGGGAATTGA+AGG | 0.409167 | 7.2:-3624894 | None:intergenic |
| ACCAAAGAAACCCTTGAATC+AGG | 0.421703 | 7.2:+3626948 | MS.gene29323:CDS |
| ATCTGTATTCCCTGGGCAAT+CGG | 0.431457 | 7.2:-3627525 | None:intergenic |
| ATCTCCTTCTGCTCAAGTCC+AGG | 0.434481 | 7.2:+3624907 | MS.gene29323:CDS |
| AATTACCTCGTCGTTACCGT+TGG | 0.465299 | 7.2:-3625054 | None:intergenic |
| ATTACCTCGTCGTTACCGTT+GGG | 0.472005 | 7.2:-3625053 | None:intergenic |
| GTTCACGTGGAACACAAAAC+AGG | 0.477621 | 7.2:+3626784 | MS.gene29323:CDS |
| GGACTTGAGCAGAAGGAGAT+GGG | 0.479224 | 7.2:-3624904 | None:intergenic |
| AAGGCATCATCTGTATTCCC+TGG | 0.485485 | 7.2:-3627533 | None:intergenic |
| CATACATCATACCTGATTCA+AGG | 0.490102 | 7.2:-3626959 | None:intergenic |
| TCCCTGGGCAATCGGTAACC+TGG | 0.493808 | 7.2:-3627517 | None:intergenic |
| ACTCCGAGAATGCATTCATT+CGG | 0.494582 | 7.2:+3624794 | None:intergenic |
| TGGACTTGAGCAGAAGGAGA+TGG | 0.515963 | 7.2:-3624905 | None:intergenic |
| AACTTTGCATGCTCTTTAGA+GGG | 0.517084 | 7.2:-3627274 | None:intergenic |
| TGCCAGGTTACCGATTGCCC+AGG | 0.539181 | 7.2:+3627515 | MS.gene29323:CDS |
| GGGAATGATACCATCCCAAA+GGG | 0.544276 | 7.2:-3627254 | None:intergenic |
| AATTTAACTTGACCTTGCAC+TGG | 0.545173 | 7.2:+3627446 | MS.gene29323:CDS |
| TATATACCTGATCAATGAAA+CGG | 0.547986 | 7.2:-3627321 | None:intergenic |
| GCTGATAAAATAGTAATGCC+AGG | 0.552824 | 7.2:+3627499 | MS.gene29323:CDS |
| AGAAAATGTTAGCAAAGCGT+TGG | 0.554899 | 7.2:-3624825 | None:intergenic |
| GAGACCTGGACTTGAGCAGA+AGG | 0.562774 | 7.2:-3624911 | None:intergenic |
| TGGCATAACATGCCAGTGCA+AGG | 0.570110 | 7.2:-3627458 | None:intergenic |
| ATACATCATACCTGATTCAA+GGG | 0.573602 | 7.2:-3626958 | None:intergenic |
| TTACAGATATCCCTTTGGGA+TGG | 0.587335 | 7.2:+3627244 | MS.gene29323:intron |
| GACTTGAGCAGAAGGAGATG+GGG | 0.594194 | 7.2:-3624903 | None:intergenic |
| AGGCATCATCTGTATTCCCT+GGG | 0.600588 | 7.2:-3627532 | None:intergenic |
| GCCAGGTTACCGATTGCCCA+GGG | 0.602814 | 7.2:+3627516 | MS.gene29323:CDS |
| AGGGAATGATACCATCCCAA+AGG | 0.633639 | 7.2:-3627255 | None:intergenic |
| ATTTACAGTCTCTGTTCACG+TGG | 0.665261 | 7.2:+3626771 | MS.gene29323:CDS |
| GTACAGGGAACCAATTTGCG+TGG | 0.675868 | 7.2:+3627418 | MS.gene29323:intron |
| ACAACCCAACGGTAACGACG+AGG | 0.716822 | 7.2:+3625049 | MS.gene29323:CDS |
| TGGTTTCAGAAACAACCCAA+CGG | 0.718343 | 7.2:+3625038 | MS.gene29323:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATACTGTTTTTTTTTTTTTT+TGG | - | chr7.2:3626171-3626190 | None:intergenic | 10.0% |
| !!! | TTATTTTTATTTTTATGTGT+AGG | + | chr7.2:3625001-3625020 | MS.gene29323:intron | 10.0% |
| !!! | GTTTTTTGCAAATAAATAAA+AGG | - | chr7.2:3626285-3626304 | None:intergenic | 15.0% |
| !!! | TTCAAACTTTTTTTTTTGAA+TGG | + | chr7.2:3626671-3626690 | MS.gene29323:intron | 15.0% |
| !! | AAATAAAAAAGGCAAAGTTA+AGG | - | chr7.2:3627396-3627415 | None:intergenic | 20.0% |
| !! | AAATAAATAAAAGGAGAGAT+TGG | - | chr7.2:3626276-3626295 | None:intergenic | 20.0% |
| !! | AAATAAGACAAAAAACTAAG+AGG | - | chr7.2:3626833-3626852 | None:intergenic | 20.0% |
| !! | AATAAATAAAAGGAGAGATT+GGG | - | chr7.2:3626275-3626294 | None:intergenic | 20.0% |
| !! | ATATGATACTCATAATAATG+TGG | - | chr7.2:3626581-3626600 | None:intergenic | 20.0% |
| !! | TTACTTTATCCTTATGTTTA+TGG | + | chr7.2:3625184-3625203 | MS.gene29323:intron | 20.0% |
| !!! | TTAGTTTTTTGTCTTATTTC+AGG | + | chr7.2:3626834-3626853 | MS.gene29323:intron | 20.0% |
| !!! | TTTAATCGCTTGTTATAAAA+AGG | - | chr7.2:3627049-3627068 | None:intergenic | 20.0% |
| ! | AACAGTATAATTGTAGAACT+TGG | + | chr7.2:3626183-3626202 | MS.gene29323:intron | 25.0% |
| ! | ACAATCAGTTGAAACAAATA+AGG | - | chr7.2:3625780-3625799 | None:intergenic | 25.0% |
| ! | ACACAATTACCATAAACATA+AGG | - | chr7.2:3625196-3625215 | None:intergenic | 25.0% |
| ! | ACATTTGAATATCAGAGAAA+GGG | - | chr7.2:3626636-3626655 | None:intergenic | 25.0% |
| ! | ATAAATAAAAGGAGAGATTG+GGG | - | chr7.2:3626274-3626293 | None:intergenic | 25.0% |
| ! | ATCAGGTATATAACTCTTAT+AGG | + | chr7.2:3627332-3627351 | MS.gene29323:intron | 25.0% |
| ! | ATTCATTGTTCAAACTGAAA+TGG | + | chr7.2:3626700-3626719 | MS.gene29323:intron | 25.0% |
| ! | CCTAAATATAAGAGAAAGTT+GGG | - | chr7.2:3625550-3625569 | None:intergenic | 25.0% |
| ! | CCTATATATAAGAGAAAGTT+GGG | + | chr7.2:3625465-3625484 | MS.gene29323:intron | 25.0% |
| ! | TATATACCTGATCAATGAAA+CGG | - | chr7.2:3627324-3627343 | None:intergenic | 25.0% |
| ! | TCCTAAATATAAGAGAAAGT+TGG | - | chr7.2:3625551-3625570 | None:intergenic | 25.0% |
| ! | TCCTATATATAAGAGAAAGT+TGG | + | chr7.2:3625464-3625483 | MS.gene29323:intron | 25.0% |
| !! | ATGTGATTTTGAATTACTGA+AGG | + | chr7.2:3625370-3625389 | MS.gene29323:intron | 25.0% |
| !!! | CTACATACTTTTTTCAAAGA+TGG | + | chr7.2:3626520-3626539 | MS.gene29323:intron | 25.0% |
| !!! | TAATTGTGTCATTTAAGTTG+TGG | + | chr7.2:3625207-3625226 | MS.gene29323:intron | 25.0% |
| !!! | TATTGGTTCAAAATTTGGAT+CGG | - | chr7.2:3625511-3625530 | None:intergenic | 25.0% |
| !!! | TGATGTATTGGTTCAAAATT+TGG | - | chr7.2:3625516-3625535 | None:intergenic | 25.0% |
| !!! | TGTAGGTGTTGAATATTAAT+TGG | + | chr7.2:3625018-3625037 | MS.gene29323:intron | 25.0% |
| !!! | TTAGAAAGTGGGTTATATAA+GGG | + | chr7.2:3625943-3625962 | MS.gene29323:intron | 25.0% |
| AAAGAAAGACATGGTAATAG+TGG | + | chr7.2:3627067-3627086 | MS.gene29323:intron | 30.0% | |
| AACATAAACCCTCTTAATCA+AGG | - | chr7.2:3625829-3625848 | None:intergenic | 30.0% | |
| AAGAAAGACATGGTAATAGT+GGG | + | chr7.2:3627068-3627087 | MS.gene29323:intron | 30.0% | |
| AAGCGATTAAAAGAAAGACA+TGG | + | chr7.2:3627058-3627077 | MS.gene29323:intron | 30.0% | |
| AATTGTTGGAAACATCATGT+TGG | + | chr7.2:3626490-3626509 | MS.gene29323:intron | 30.0% | |
| ACATAAACCCTCTTAATCAA+GGG | - | chr7.2:3625828-3625847 | None:intergenic | 30.0% | |
| ACTATCTTCCTTACTAACTA+AGG | + | chr7.2:3626316-3626335 | MS.gene29323:intron | 30.0% | |
| AGATTGTTACGAAAGATGTT+AGG | + | chr7.2:3625899-3625918 | MS.gene29323:intron | 30.0% | |
| AGCATGACACTTAATATTTC+AGG | + | chr7.2:3626746-3626765 | MS.gene29323:CDS | 30.0% | |
| AGGAAGATAGTGAAGAAATA+AGG | - | chr7.2:3626307-3626326 | None:intergenic | 30.0% | |
| AGTATAATTGTAGAACTTGG+AGG | + | chr7.2:3626186-3626205 | MS.gene29323:intron | 30.0% | |
| ATACATCATACCTGATTCAA+GGG | - | chr7.2:3626961-3626980 | None:intergenic | 30.0% | |
| ATGATGTTTCCAACAATTTC+CGG | - | chr7.2:3626488-3626507 | None:intergenic | 30.0% | |
| ATTTACATACAACAGACAAG+AGG | + | chr7.2:3626427-3626446 | MS.gene29323:intron | 30.0% | |
| CAGTTGAAAAGTTAGAAAGT+GGG | + | chr7.2:3625932-3625951 | MS.gene29323:intron | 30.0% | |
| CCCAACTTTCTCTTATATAT+AGG | - | chr7.2:3625468-3625487 | None:intergenic | 30.0% | |
| CCCAACTTTCTCTTATATTT+AGG | + | chr7.2:3625547-3625566 | MS.gene29323:intron | 30.0% | |
| CCTTACATATACTGTAACAT+GGG | - | chr7.2:3625277-3625296 | None:intergenic | 30.0% | |
| CTATAGTTATAAACTCCATC+CGG | + | chr7.2:3625441-3625460 | MS.gene29323:intron | 30.0% | |
| CTTATTTCAGGACAAAAGTT+GGG | + | chr7.2:3626846-3626865 | MS.gene29323:intron | 30.0% | |
| CTTTCTCTTATATATAGGAC+CGG | - | chr7.2:3625463-3625482 | None:intergenic | 30.0% | |
| GAATTACCTCAGATTTCTTT+AGG | + | chr7.2:3627370-3627389 | MS.gene29323:intron | 30.0% | |
| GACATTTGAATATCAGAGAA+AGG | - | chr7.2:3626637-3626656 | None:intergenic | 30.0% | |
| GAGTACTTATATAGGGTATA+GGG | + | chr7.2:3625578-3625597 | MS.gene29323:intron | 30.0% | |
| GATACTCATAATAATGTGGT+AGG | - | chr7.2:3626577-3626596 | None:intergenic | 30.0% | |
| GATTGTTACGAAAGATGTTA+GGG | + | chr7.2:3625900-3625919 | MS.gene29323:intron | 30.0% | |
| GGTATATGACTTCACATATA+AGG | - | chr7.2:3625718-3625737 | None:intergenic | 30.0% | |
| GTATAATTGTAGAACTTGGA+GGG | + | chr7.2:3626187-3626206 | MS.gene29323:intron | 30.0% | |
| TAAATAAAAGGAGAGATTGG+GGG | - | chr7.2:3626273-3626292 | None:intergenic | 30.0% | |
| TAAATACCGTTTCATTGATC+AGG | + | chr7.2:3627315-3627334 | MS.gene29323:CDS | 30.0% | |
| TAACATCTTTCGTAACAATC+TGG | - | chr7.2:3625900-3625919 | None:intergenic | 30.0% | |
| TACATCGAATCTTTCAGATT+TGG | - | chr7.2:3626377-3626396 | None:intergenic | 30.0% | |
| TCAGTTGAAAAGTTAGAAAG+TGG | + | chr7.2:3625931-3625950 | MS.gene29323:intron | 30.0% | |
| TCCCTGTACACAAATAAAAA+AGG | - | chr7.2:3627407-3627426 | None:intergenic | 30.0% | |
| TCCTTACATATACTGTAACA+TGG | - | chr7.2:3625278-3625297 | None:intergenic | 30.0% | |
| TGATTAAGAGGGTTTATGTT+AGG | + | chr7.2:3625829-3625848 | MS.gene29323:intron | 30.0% | |
| TTATTTCAGGACAAAAGTTG+GGG | + | chr7.2:3626847-3626866 | MS.gene29323:intron | 30.0% | |
| TTGGGTCAACAAAAGTTAAT+GGG | + | chr7.2:3625483-3625502 | MS.gene29323:intron | 30.0% | |
| ! | ATTGGTTCAAAATTTGGATC+GGG | - | chr7.2:3625510-3625529 | None:intergenic | 30.0% |
| ! | CATTTTACAGATATCCCTTT+GGG | + | chr7.2:3627240-3627259 | MS.gene29323:intron | 30.0% |
| ! | CTTTCTCTTATATTTAGGAC+TGG | + | chr7.2:3625552-3625571 | MS.gene29323:intron | 30.0% |
| ! | GCAATTCTTTCTGTTTTCTA+AGG | + | chr7.2:3626072-3626091 | MS.gene29323:intron | 30.0% |
| ! | GGAAGAAAGGAAACTAATTT+TGG | + | chr7.2:3626868-3626887 | MS.gene29323:intron | 30.0% |
| ! | TCTTATTTCAGGACAAAAGT+TGG | + | chr7.2:3626845-3626864 | MS.gene29323:intron | 30.0% |
| ! | TTGCTTCATAAGACTCTTTT+TGG | - | chr7.2:3625662-3625681 | None:intergenic | 30.0% |
| !! | GTTAGAAAGTGGGTTATATA+AGG | + | chr7.2:3625942-3625961 | MS.gene29323:intron | 30.0% |
| !!! | GCCTTTTTTATTTGTGTACA+GGG | + | chr7.2:3627403-3627422 | MS.gene29323:intron | 30.0% |
| !!! | TGCCTTTTTTATTTGTGTAC+AGG | + | chr7.2:3627402-3627421 | MS.gene29323:intron | 30.0% |
| AAACAGGTCAAAATCATAGC+CGG | + | chr7.2:3626466-3626485 | MS.gene29323:intron | 35.0% | |
| AAACTTTGCATGCTCTTTAG+AGG | - | chr7.2:3627278-3627297 | None:intergenic | 35.0% | |
| AAATCATAGCCGGAAATTGT+TGG | + | chr7.2:3626476-3626495 | MS.gene29323:intron | 35.0% | |
| AAATTCTCTACCACGCAAAT+TGG | - | chr7.2:3627431-3627450 | None:intergenic | 35.0% | |
| AACTTTGCATGCTCTTTAGA+GGG | - | chr7.2:3627277-3627296 | None:intergenic | 35.0% | |
| AAGGAACAGAACACAGTTTA+TGG | + | chr7.2:3625293-3625312 | MS.gene29323:intron | 35.0% | |
| ACTCATAATAATGTGGTAGG+CGG | - | chr7.2:3626574-3626593 | None:intergenic | 35.0% | |
| AGAAAATGTTAGCAAAGCGT+TGG | - | chr7.2:3624828-3624847 | None:intergenic | 35.0% | |
| AGTTGGCAAGCTTCAAATTT+AGG | - | chr7.2:3627026-3627045 | None:intergenic | 35.0% | |
| ATCAGGTATGATGTATGCTT+TGG | + | chr7.2:3626965-3626984 | MS.gene29323:intron | 35.0% | |
| ATCGAATCTTTCAGATTTGG+AGG | - | chr7.2:3626374-3626393 | None:intergenic | 35.0% | |
| ATGACTTCACATATAAGGCA+AGG | - | chr7.2:3625713-3625732 | None:intergenic | 35.0% | |
| ATTCGATGTAATTGCTTCAG+AGG | + | chr7.2:3626387-3626406 | MS.gene29323:intron | 35.0% | |
| CATACATCATACCTGATTCA+AGG | - | chr7.2:3626962-3626981 | None:intergenic | 35.0% | |
| CCAAAGGGATATCTGTAAAA+TGG | - | chr7.2:3627242-3627261 | None:intergenic | 35.0% | |
| CCCATGTTACAGTATATGTA+AGG | + | chr7.2:3625274-3625293 | MS.gene29323:intron | 35.0% | |
| GCCAAAAACTGGAAAAATGT+TGG | + | chr7.2:3627477-3627496 | MS.gene29323:CDS | 35.0% | |
| GCTGATAAAATAGTAATGCC+AGG | + | chr7.2:3627499-3627518 | MS.gene29323:CDS | 35.0% | |
| GTAGTTTGACGACTTCTAAT+AGG | - | chr7.2:3626352-3626371 | None:intergenic | 35.0% | |
| GTTGGGTCAACAAAAGTTAA+TGG | + | chr7.2:3625482-3625501 | MS.gene29323:intron | 35.0% | |
| TATAGGGTATAGGGTATGAA+AGG | + | chr7.2:3625587-3625606 | MS.gene29323:intron | 35.0% | |
| TCTTCCTAGACAATACCATT+GGG | - | chr7.2:3625406-3625425 | None:intergenic | 35.0% | |
| TCTTCCTTACTAACTAAGGA+AGG | + | chr7.2:3626320-3626339 | MS.gene29323:intron | 35.0% | |
| TGAAGTCATATACCTTCTGT+TGG | + | chr7.2:3625724-3625743 | MS.gene29323:intron | 35.0% | |
| TGACTTCACATATAAGGCAA+GGG | - | chr7.2:3625712-3625731 | None:intergenic | 35.0% | |
| TGCTGAATAAACAGTGTAGT+CGG | + | chr7.2:3626031-3626050 | MS.gene29323:intron | 35.0% | |
| TTAAGGCCTAAAGAAATCTG+AGG | - | chr7.2:3627379-3627398 | None:intergenic | 35.0% | |
| TTTGAAAGATACGAGGTCTT+TGG | - | chr7.2:3626235-3626254 | None:intergenic | 35.0% | |
| ! | ATATATCAAGCACTGTGAAC+CGG | - | chr7.2:3626111-3626130 | None:intergenic | 35.0% |
| ! | ATTTTTGTCCTTCCTTCGTT+AGG | + | chr7.2:3625241-3625260 | MS.gene29323:intron | 35.0% |
| ! | CCATTTTACAGATATCCCTT+TGG | + | chr7.2:3627239-3627258 | MS.gene29323:intron | 35.0% |
| ! | CTCTTATATTTAGGACTGGA+GGG | + | chr7.2:3625556-3625575 | MS.gene29323:intron | 35.0% |
| ! | CTTGTCATTTGAAAGATACG+AGG | - | chr7.2:3626242-3626261 | None:intergenic | 35.0% |
| ! | GCCAACATTTTTCCAGTTTT+TGG | - | chr7.2:3627481-3627500 | None:intergenic | 35.0% |
| ! | GGAGTACTTATATAGGGTAT+AGG | + | chr7.2:3625577-3625596 | MS.gene29323:intron | 35.0% |
| ! | TCTCTTATATTTAGGACTGG+AGG | + | chr7.2:3625555-3625574 | MS.gene29323:intron | 35.0% |
| ! | TGCTTCTTTTCTATGCTTTC+AGG | + | chr7.2:3626894-3626913 | MS.gene29323:intron | 35.0% |
| ! | TTTTCATTTACCAGCTCGTT+TGG | + | chr7.2:3626608-3626627 | MS.gene29323:intron | 35.0% |
| ! | TTTTTGTCCTTCCTTCGTTA+GGG | + | chr7.2:3625242-3625261 | MS.gene29323:intron | 35.0% |
| !! | AATTTAACTTGACCTTGCAC+TGG | + | chr7.2:3627446-3627465 | MS.gene29323:CDS | 35.0% |
| !! | CGCTTGTTATAAAAAGGAGT+TGG | - | chr7.2:3627043-3627062 | None:intergenic | 35.0% |
| !! | GGAAGCATTATTATTCTTGC+AGG | + | chr7.2:3626721-3626740 | MS.gene29323:intron | 35.0% |
| !! | GTCAACAAGAGTTGATGTAT+TGG | - | chr7.2:3625528-3625547 | None:intergenic | 35.0% |
| AATCCCCAATGGTATTGTCT+AGG | + | chr7.2:3625399-3625418 | MS.gene29323:intron | 40.0% | |
| ACCAAAGAAACCCTTGAATC+AGG | + | chr7.2:3626948-3626967 | MS.gene29323:CDS | 40.0% | |
| ACCACAACCCTTGATTAAGA+GGG | + | chr7.2:3625818-3625837 | MS.gene29323:intron | 40.0% | |
| ACCTGATTCAAGGGTTTCTT+TGG | - | chr7.2:3626952-3626971 | None:intergenic | 40.0% | |
| ACGAAGGAAGGACAAAAATC+AGG | - | chr7.2:3625240-3625259 | None:intergenic | 40.0% | |
| AGGAATGCTCCCAAAATACA+AGG | - | chr7.2:3625993-3626012 | None:intergenic | 40.0% | |
| ATTTACAGTCTCTGTTCACG+TGG | + | chr7.2:3626771-3626790 | MS.gene29323:CDS | 40.0% | |
| CGAAGGAAGGACAAAAATCA+GGG | - | chr7.2:3625239-3625258 | None:intergenic | 40.0% | |
| CTCTCCTTCCTTAGTTAGTA+AGG | - | chr7.2:3626327-3626346 | None:intergenic | 40.0% | |
| CTCTTATATATAGGACCGGA+TGG | - | chr7.2:3625459-3625478 | None:intergenic | 40.0% | |
| CTCTTCCTAGACAATACCAT+TGG | - | chr7.2:3625407-3625426 | None:intergenic | 40.0% | |
| CTTCCTAGACAATACCATTG+GGG | - | chr7.2:3625405-3625424 | None:intergenic | 40.0% | |
| TACTTGTGTGTGCATGAAAC+AGG | + | chr7.2:3626450-3626469 | MS.gene29323:intron | 40.0% | |
| TGGCATGTTATGCCAAAAAC+TGG | + | chr7.2:3627466-3627485 | MS.gene29323:CDS | 40.0% | |
| TGGTTTCAGAAACAACCCAA+CGG | + | chr7.2:3625038-3625057 | MS.gene29323:CDS | 40.0% | |
| TTATGTTAGGCGAAAGAAGC+AGG | + | chr7.2:3625842-3625861 | MS.gene29323:intron | 40.0% | |
| ! | CGGATGGTACCTTGTATTTT+GGG | + | chr7.2:3625981-3626000 | MS.gene29323:intron | 40.0% |
| ! | TTACAGATATCCCTTTGGGA+TGG | + | chr7.2:3627244-3627263 | MS.gene29323:intron | 40.0% |
| !! | AAGACATGGTAATAGTGGGT+TGG | + | chr7.2:3627072-3627091 | MS.gene29323:intron | 40.0% |
| !! | ACTGGAGGGAGTACTTATAT+AGG | + | chr7.2:3625570-3625589 | MS.gene29323:intron | 40.0% |
| !! | CTGGAGGGAGTACTTATATA+GGG | + | chr7.2:3625571-3625590 | MS.gene29323:intron | 40.0% |
| !! | TGCTGCATTTCTGTCACTTT+CGG | + | chr7.2:3627178-3627197 | MS.gene29323:intron | 40.0% |
| !!! | TATTTTGGGAGCATTCCTGT+GGG | + | chr7.2:3625995-3626014 | MS.gene29323:intron | 40.0% |
| AAGATACGAGGTCTTTGGCT+AGG | - | chr7.2:3626230-3626249 | None:intergenic | 45.0% | |
| AAGGGAAGTTACCAAGAGAG+CGG | + | chr7.2:3625961-3625980 | MS.gene29323:intron | 45.0% | |
| AATTACCTCGTCGTTACCGT+TGG | - | chr7.2:3625057-3625076 | None:intergenic | 45.0% | |
| ACCCTCTTAATCAAGGGTTG+TGG | - | chr7.2:3625822-3625841 | None:intergenic | 45.0% | |
| AGAAGGAGATGGGGAATTGA+AGG | - | chr7.2:3624897-3624916 | None:intergenic | 45.0% | |
| AGATACGAGGTCTTTGGCTA+GGG | - | chr7.2:3626229-3626248 | None:intergenic | 45.0% | |
| AGGAAGGGTAGTATGTGATG+TGG | + | chr7.2:3625635-3625654 | MS.gene29323:intron | 45.0% | |
| AGGGAATGATACCATCCCAA+AGG | - | chr7.2:3627258-3627277 | None:intergenic | 45.0% | |
| ATCTGTATTCCCTGGGCAAT+CGG | - | chr7.2:3627528-3627547 | None:intergenic | 45.0% | |
| ATTACCTCGTCGTTACCGTT+GGG | - | chr7.2:3625056-3625075 | None:intergenic | 45.0% | |
| CACAGTTATACTGCTTGGGA+AGG | - | chr7.2:3626145-3626164 | None:intergenic | 45.0% | |
| CTAAGGCCAGTTCTATTCAC+CGG | + | chr7.2:3626089-3626108 | MS.gene29323:intron | 45.0% | |
| CTTCCCAAGCAGTATAACTG+TGG | + | chr7.2:3626143-3626162 | MS.gene29323:intron | 45.0% | |
| GAAAGAGAAGAGAAGAGACC+TGG | - | chr7.2:3624928-3624947 | None:intergenic | 45.0% | |
| GACCACAACCCTTGATTAAG+AGG | + | chr7.2:3625817-3625836 | MS.gene29323:intron | 45.0% | |
| GCGAAAGAAGCAGGTTACAA+GGG | + | chr7.2:3625851-3625870 | MS.gene29323:intron | 45.0% | |
| GCTCCACAGTTATACTGCTT+GGG | - | chr7.2:3626149-3626168 | None:intergenic | 45.0% | |
| GGAATTCATCTCCCTAACGA+AGG | - | chr7.2:3625256-3625275 | None:intergenic | 45.0% | |
| GGACAAAAGTTGGGGAAGAA+AGG | + | chr7.2:3626855-3626874 | MS.gene29323:intron | 45.0% | |
| GGGAATGATACCATCCCAAA+GGG | - | chr7.2:3627257-3627276 | None:intergenic | 45.0% | |
| GTTCACGTGGAACACAAAAC+AGG | + | chr7.2:3626784-3626803 | MS.gene29323:CDS | 45.0% | |
| TAAAAGGAGAGATTGGGGGA+AGG | - | chr7.2:3626269-3626288 | None:intergenic | 45.0% | |
| TACCCTTCCTTGAGCACTTT+GGG | - | chr7.2:3625625-3625644 | None:intergenic | 45.0% | |
| TGTGAACCGGTGAATAGAAC+TGG | - | chr7.2:3626098-3626117 | None:intergenic | 45.0% | |
| TTCATCTCCCTAACGAAGGA+AGG | - | chr7.2:3625252-3625271 | None:intergenic | 45.0% | |
| ! | GAAGGAGTGTAAATCCCCAA+TGG | + | chr7.2:3625388-3625407 | MS.gene29323:intron | 45.0% |
| ! | GCGGATGGTACCTTGTATTT+TGG | + | chr7.2:3625980-3625999 | MS.gene29323:intron | 45.0% |
| !! | TGGGTTGGTCATTGTTGAGA+TGG | + | chr7.2:3627087-3627106 | MS.gene29323:intron | 45.0% |
| !!! | GTATTTTGGGAGCATTCCTG+TGG | + | chr7.2:3625994-3626013 | MS.gene29323:intron | 45.0% |
| !! | AAAATAAAAATTAACAAAAA+AGG | - | chr7.2:3624988-3625007 | None:intergenic | 5.0% |
| !! | AAATAAAAATTAACAAAAAA+GGG | - | chr7.2:3624987-3625006 | None:intergenic | 5.0% |
| AGAAAGGGATCCAAACGAGC+TGG | - | chr7.2:3626621-3626640 | None:intergenic | 50.0% | |
| AGGGTTGTGGTCTATCGCAT+TGG | - | chr7.2:3625809-3625828 | None:intergenic | 50.0% | |
| ATCTCCTTCTGCTCAAGTCC+AGG | + | chr7.2:3624907-3624926 | MS.gene29323:CDS | 50.0% | |
| CTACCCTTCCTTGAGCACTT+TGG | - | chr7.2:3625626-3625645 | None:intergenic | 50.0% | |
| GAAGTTACCAAGAGAGCGGA+TGG | + | chr7.2:3625965-3625984 | MS.gene29323:intron | 50.0% | |
| GACTTGAGCAGAAGGAGATG+GGG | - | chr7.2:3624906-3624925 | None:intergenic | 50.0% | |
| GAGTGAGAGTCTCCAACAGA+AGG | - | chr7.2:3625739-3625758 | None:intergenic | 50.0% | |
| GGACTTGAGCAGAAGGAGAT+GGG | - | chr7.2:3624907-3624926 | None:intergenic | 50.0% | |
| GGCGAAAGAAGCAGGTTACA+AGG | + | chr7.2:3625850-3625869 | MS.gene29323:intron | 50.0% | |
| GGCTCCACAGTTATACTGCT+TGG | - | chr7.2:3626150-3626169 | None:intergenic | 50.0% | |
| GTACAGGGAACCAATTTGCG+TGG | + | chr7.2:3627418-3627437 | MS.gene29323:intron | 50.0% | |
| TGGACTTGAGCAGAAGGAGA+TGG | - | chr7.2:3624908-3624927 | None:intergenic | 50.0% | |
| TGGCATAACATGCCAGTGCA+AGG | - | chr7.2:3627461-3627480 | None:intergenic | 50.0% | |
| ! | CTCCCAAAGTGCTCAAGGAA+GGG | + | chr7.2:3625620-3625639 | MS.gene29323:intron | 50.0% |
| ! | CTTCCTTGAGCACTTTGGGA+GGG | - | chr7.2:3625621-3625640 | None:intergenic | 50.0% |
| ACAACCCAACGGTAACGACG+AGG | + | chr7.2:3625049-3625068 | MS.gene29323:CDS | 55.0% | |
| CAGAACCAGACTCTACCCAC+AGG | - | chr7.2:3626013-3626032 | None:intergenic | 55.0% | |
| CCTTCCTTGAGCACTTTGGG+AGG | - | chr7.2:3625622-3625641 | None:intergenic | 55.0% | |
| GAGACCTGGACTTGAGCAGA+AGG | - | chr7.2:3624914-3624933 | None:intergenic | 55.0% | |
| GCATTCCTGTGGGTAGAGTC+TGG | + | chr7.2:3626005-3626024 | MS.gene29323:intron | 55.0% | |
| TACGAGGTCTTTGGCTAGGG+AGG | - | chr7.2:3626226-3626245 | None:intergenic | 55.0% | |
| ! | ACTCCCTCCCAAAGTGCTCA+AGG | + | chr7.2:3625615-3625634 | MS.gene29323:intron | 55.0% |
| ! | CAAGGTACCATCCGCTCTCT+TGG | - | chr7.2:3625975-3625994 | None:intergenic | 55.0% |
| ! | CCTCCCAAAGTGCTCAAGGA+AGG | + | chr7.2:3625619-3625638 | MS.gene29323:intron | 55.0% |
| CTGCTTGGGAAGGAGAAGCG+AGG | - | chr7.2:3626135-3626154 | None:intergenic | 60.0% | |
| TCCCTGGGCAATCGGTAACC+TGG | - | chr7.2:3627520-3627539 | None:intergenic | 60.0% | |
| ! | GCCAGGTTACCGATTGCCCA+GGG | + | chr7.2:3627516-3627535 | MS.gene29323:CDS | 60.0% |
| ! | TGCCAGGTTACCGATTGCCC+AGG | + | chr7.2:3627515-3627534 | MS.gene29323:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 3624803 | 3627549 | 3624803 | ID=MS.gene29323 |
| chr7.2 | mRNA | 3624803 | 3627549 | 3624803 | ID=MS.gene29323.t1;Parent=MS.gene29323 |
| chr7.2 | exon | 3624803 | 3624928 | 3624803 | ID=MS.gene29323.t1.exon1;Parent=MS.gene29323.t1 |
| chr7.2 | CDS | 3624803 | 3624928 | 3624803 | ID=cds.MS.gene29323.t1;Parent=MS.gene29323.t1 |
| chr7.2 | exon | 3625023 | 3625070 | 3625023 | ID=MS.gene29323.t1.exon2;Parent=MS.gene29323.t1 |
| chr7.2 | CDS | 3625023 | 3625070 | 3625023 | ID=cds.MS.gene29323.t1;Parent=MS.gene29323.t1 |
| chr7.2 | exon | 3626743 | 3626805 | 3626743 | ID=MS.gene29323.t1.exon3;Parent=MS.gene29323.t1 |
| chr7.2 | CDS | 3626743 | 3626805 | 3626743 | ID=cds.MS.gene29323.t1;Parent=MS.gene29323.t1 |
| chr7.2 | exon | 3626916 | 3626969 | 3626916 | ID=MS.gene29323.t1.exon4;Parent=MS.gene29323.t1 |
| chr7.2 | CDS | 3626916 | 3626969 | 3626916 | ID=cds.MS.gene29323.t1;Parent=MS.gene29323.t1 |
| chr7.2 | exon | 3627250 | 3627336 | 3627250 | ID=MS.gene29323.t1.exon5;Parent=MS.gene29323.t1 |
| chr7.2 | CDS | 3627250 | 3627336 | 3627250 | ID=cds.MS.gene29323.t1;Parent=MS.gene29323.t1 |
| chr7.2 | exon | 3627424 | 3627549 | 3627424 | ID=MS.gene29323.t1.exon6;Parent=MS.gene29323.t1 |
| chr7.2 | CDS | 3627424 | 3627549 | 3627424 | ID=cds.MS.gene29323.t1;Parent=MS.gene29323.t1 |
| Gene Sequence |
| Protein sequence |
