Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46806.t1 | XP_003599103.1 | 98.8 | 167 | 0 | 1 | 1 | 165 | 1 | 167 | 5.70E-90 | 340.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46806.t1 | Q53YF3 | 78.4 | 167 | 34 | 1 | 1 | 165 | 1 | 167 | 4.9e-74 | 278.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46806.t1 | G7IWJ5 | 98.8 | 167 | 0 | 1 | 1 | 165 | 1 | 167 | 4.1e-90 | 340.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene29323 | MS.gene46806 | PPI |
| MS.gene67564 | MS.gene46806 | PPI |
| MS.gene072455 | MS.gene46806 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46806.t1 | MTR_3g027890 | 98.802 | 167 | 0 | 1 | 1 | 165 | 1 | 167 | 5.75e-122 | 340 |
| MS.gene46806.t1 | MTR_7g113740 | 81.437 | 167 | 29 | 1 | 1 | 165 | 1 | 167 | 1.52e-104 | 296 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46806.t1 | AT5G27430 | 78.443 | 167 | 34 | 1 | 1 | 165 | 1 | 167 | 1.31e-98 | 281 |
| MS.gene46806.t1 | AT3G05230 | 76.048 | 167 | 38 | 1 | 1 | 165 | 1 | 167 | 1.29e-95 | 274 |
| MS.gene46806.t1 | AT3G05230 | 73.016 | 126 | 32 | 1 | 1 | 124 | 1 | 126 | 6.72e-66 | 197 |
Find 31 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTTTGCGGTTACGATTCT+TGG | 0.201890 | 3.3:+20566083 | MS.gene46806:CDS |
| CTAAGTAACTAACCTGATTC+AGG | 0.263362 | 3.3:-20568973 | None:intergenic |
| ACCTGATTCAGGGGATGCTT+TGG | 0.345805 | 3.3:-20568962 | None:intergenic |
| AATTAGTCTTGCCAGGTTAT+CGG | 0.378728 | 3.3:+20569846 | MS.gene46806:CDS |
| TAAATACCGTTTCGTTGATC+AGG | 0.395637 | 3.3:+20569657 | MS.gene46806:CDS |
| TCCAAAGCATCCCCTGAATC+AGG | 0.406151 | 3.3:+20568961 | MS.gene46806:CDS |
| GAACGCTTTGTTCACCTTTG+CGG | 0.415460 | 3.3:+20566070 | MS.gene46806:CDS |
| TTTCACGTGGAACACAAAAC+AGG | 0.440170 | 3.3:+20568692 | MS.gene46806:CDS |
| TGAATCAAAATGCATTCATT+CGG | 0.444264 | 3.3:+20566038 | None:intergenic |
| TTTACCTCGTCATTGCCGTT+GGG | 0.444925 | 3.3:-20566445 | None:intergenic |
| ATTTACCTCGTCATTGCCGT+TGG | 0.451824 | 3.3:-20566446 | None:intergenic |
| GCTGATAAATTAGTCTTGCC+AGG | 0.458634 | 3.3:+20569839 | MS.gene46806:CDS |
| TGGCATGTCATGCCGAAGAC+TGG | 0.460828 | 3.3:+20569806 | MS.gene46806:CDS |
| TAAGTAACTAACCTGATTCA+GGG | 0.505372 | 3.3:-20568972 | None:intergenic |
| TGTAGGTGTTGAATGTCAAC+TGG | 0.509530 | 3.3:+20566410 | MS.gene46806:intron |
| TGTGCAGGCAACCGATAACC+TGG | 0.510576 | 3.3:-20569857 | None:intergenic |
| GTGCTCTTTAGTCGGAATGA+TGG | 0.531330 | 3.3:-20569608 | None:intergenic |
| AACTTTGCGTGCTCTTTAGT+CGG | 0.532662 | 3.3:-20569616 | None:intergenic |
| AGGCATCATCTGTATTGTGC+AGG | 0.541458 | 3.3:-20569872 | None:intergenic |
| AATTTAACTTGACTCTGCAC+TGG | 0.555626 | 3.3:+20569786 | MS.gene46806:CDS |
| TAAATACCTGATCAACGAAA+CGG | 0.560395 | 3.3:-20569663 | None:intergenic |
| GGTACCTGAACTTGAACAGA+AGG | 0.583896 | 3.3:-20566155 | None:intergenic |
| CGGAATGATGGCATCCCAGA+GGG | 0.592693 | 3.3:-20569596 | None:intergenic |
| ACCAAGAATCGTAACCGCAA+AGG | 0.601423 | 3.3:-20566084 | None:intergenic |
| TGAACTTGAACAGAAGGAGA+AGG | 0.629057 | 3.3:-20566149 | None:intergenic |
| AGTATCAGTGAAAGAAGCGA+TGG | 0.639149 | 3.3:-20566117 | None:intergenic |
| AAGTAACTAACCTGATTCAG+GGG | 0.665656 | 3.3:-20568971 | None:intergenic |
| TGGTTTCAGAAACAGCCCAA+CGG | 0.684886 | 3.3:+20566430 | MS.gene46806:CDS |
| GTCCAGGGAAGCAATTTGCG+CGG | 0.687286 | 3.3:+20569758 | MS.gene46806:intron |
| ACAGCCCAACGGCAATGACG+AGG | 0.690378 | 3.3:+20566441 | MS.gene46806:CDS |
| TCGGAATGATGGCATCCCAG+AGG | 0.716922 | 3.3:-20569597 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAAAAAAATGATATAAT+TGG | - | chr3.3:20566562-20566581 | None:intergenic | 10.0% |
| !!! | ATTGAATATATTTTTTGTTA+AGG | + | chr3.3:20566979-20566998 | MS.gene46806:intron | 10.0% |
| !!! | GAATTTTATATGTTAAATAA+AGG | - | chr3.3:20567803-20567822 | None:intergenic | 10.0% |
| !! | ATTAATAAAAGACATATTCA+AGG | + | chr3.3:20567333-20567352 | MS.gene46806:intron | 15.0% |
| !! | TAATGAAATTAAGAATAAGT+AGG | - | chr3.3:20567701-20567720 | None:intergenic | 15.0% |
| !! | TTATAATTATAATGCATTCT+GGG | + | chr3.3:20567159-20567178 | MS.gene46806:intron | 15.0% |
| !!! | AAAAAATAAAAACAGTGTTT+TGG | - | chr3.3:20569192-20569211 | None:intergenic | 15.0% |
| !!! | ACTAGTTCTTAAATTTATAT+GGG | + | chr3.3:20566375-20566394 | MS.gene46806:intron | 15.0% |
| !! | AAAGCAATAAGTTAATTATC+AGG | + | chr3.3:20568778-20568797 | MS.gene46806:intron | 20.0% |
| !! | AATAAGTTAATTATCAGGTA+CGG | + | chr3.3:20568783-20568802 | MS.gene46806:intron | 20.0% |
| !! | AATTTCGGTAAAATAGTTAA+GGG | - | chr3.3:20568586-20568605 | None:intergenic | 20.0% |
| !! | ATTGAATTTAATATGCACTT+TGG | + | chr3.3:20568840-20568859 | MS.gene46806:intron | 20.0% |
| !! | CAATTATGATAGGAAAAATA+TGG | - | chr3.3:20569244-20569263 | None:intergenic | 20.0% |
| !! | CTTATAATTATAATGCATTC+TGG | + | chr3.3:20567158-20567177 | MS.gene46806:intron | 20.0% |
| !! | TAACTTAGAAATTGAAATTC+AGG | + | chr3.3:20568240-20568259 | MS.gene46806:intron | 20.0% |
| !! | TGCTAGAATTATATTGAAAA+GGG | + | chr3.3:20567580-20567599 | MS.gene46806:intron | 20.0% |
| !! | TTAGTGTTAAATTGCAAATA+GGG | + | chr3.3:20567896-20567915 | MS.gene46806:intron | 20.0% |
| !! | TTTAGTGTTAAATTGCAAAT+AGG | + | chr3.3:20567895-20567914 | MS.gene46806:intron | 20.0% |
| !!! | ATACTATATACTTTTCAGAA+AGG | - | chr3.3:20568755-20568774 | None:intergenic | 20.0% |
| !!! | ATCTTTTGTATGTAATTTCA+TGG | - | chr3.3:20567124-20567143 | None:intergenic | 20.0% |
| !!! | ATTCATCTTTCAATCTTTTT+TGG | + | chr3.3:20566474-20566493 | MS.gene46806:intron | 20.0% |
| !!! | CACTAGTTCTTAAATTTATA+TGG | + | chr3.3:20566374-20566393 | MS.gene46806:intron | 20.0% |
| !!! | GTAAACAATTATTTTGATCA+TGG | + | chr3.3:20566499-20566518 | MS.gene46806:intron | 20.0% |
| !!! | GTAAGAGTAAATCATAATTT+TGG | - | chr3.3:20567216-20567235 | None:intergenic | 20.0% |
| !!! | TACTATATACTTTTCAGAAA+GGG | - | chr3.3:20568754-20568773 | None:intergenic | 20.0% |
| ! | AAAAAGAGAGGAAACAATAA+TGG | + | chr3.3:20567618-20567637 | MS.gene46806:intron | 25.0% |
| ! | AACAAAATTTCTGCATAAGT+AGG | + | chr3.3:20568430-20568449 | MS.gene46806:intron | 25.0% |
| ! | AACTAACAACATACAACATT+GGG | - | chr3.3:20567245-20567264 | None:intergenic | 25.0% |
| ! | AAGATTCAGACATAATCATT+TGG | - | chr3.3:20568392-20568411 | None:intergenic | 25.0% |
| ! | AATTACAGAATTAGCTAGTT+TGG | + | chr3.3:20566954-20566973 | MS.gene46806:intron | 25.0% |
| ! | ATAGTACATACAAGTCTAAA+TGG | - | chr3.3:20567730-20567749 | None:intergenic | 25.0% |
| ! | ATAGTTAAGGGAATATCTAT+AGG | - | chr3.3:20568574-20568593 | None:intergenic | 25.0% |
| ! | ATGAAGTGAACAATTATGAT+AGG | - | chr3.3:20569254-20569273 | None:intergenic | 25.0% |
| ! | ATTTAGTAATGACACATTCT+AGG | - | chr3.3:20566924-20566943 | None:intergenic | 25.0% |
| ! | CAAAGAAACATTACGAATTT+CGG | - | chr3.3:20568601-20568620 | None:intergenic | 25.0% |
| ! | CTGGCAAGTTTAATATTTAA+GGG | - | chr3.3:20569352-20569371 | None:intergenic | 25.0% |
| ! | GAAAATTGTGAGAGAAATAT+CGG | - | chr3.3:20569131-20569150 | None:intergenic | 25.0% |
| ! | GAATAGATAAAAGAAAGTCA+TGG | + | chr3.3:20569390-20569409 | MS.gene46806:intron | 25.0% |
| ! | GAATTTCGGTAAAATAGTTA+AGG | - | chr3.3:20568587-20568606 | None:intergenic | 25.0% |
| ! | GTGCTAGAATTATATTGAAA+AGG | + | chr3.3:20567579-20567598 | MS.gene46806:intron | 25.0% |
| ! | TAACTAACAACATACAACAT+TGG | - | chr3.3:20567246-20567265 | None:intergenic | 25.0% |
| ! | TAGTGTTAAATTGCAAATAG+GGG | + | chr3.3:20567897-20567916 | MS.gene46806:intron | 25.0% |
| ! | TGATCTTAATATATCTAGAC+AGG | + | chr3.3:20567775-20567794 | MS.gene46806:intron | 25.0% |
| ! | TTCATAATTATGAGAGTGAT+AGG | + | chr3.3:20567532-20567551 | MS.gene46806:intron | 25.0% |
| ! | TTTCAAATTATTAGCTGTGT+CGG | - | chr3.3:20566715-20566734 | None:intergenic | 25.0% |
| !! | TCTCAGACATTTTTATATCA+AGG | - | chr3.3:20566325-20566344 | None:intergenic | 25.0% |
| !! | TGTATACTCTTGTTTAATTC+TGG | + | chr3.3:20567455-20567474 | MS.gene46806:intron | 25.0% |
| !! | TTTTCAGAAAGGGAAAAAAA+AGG | - | chr3.3:20568744-20568763 | None:intergenic | 25.0% |
| !! | TTTTCGGTTCAAATTATTGT+CGG | + | chr3.3:20566577-20566596 | MS.gene46806:intron | 25.0% |
| !!! | ACAAGAGTATACAATCATTT+TGG | - | chr3.3:20567448-20567467 | None:intergenic | 25.0% |
| !!! | TAGTTTTAGACACAAATTTG+AGG | + | chr3.3:20567267-20567286 | MS.gene46806:intron | 25.0% |
| !!! | TTTTTTGTTAAGGCTTTGTT+TGG | + | chr3.3:20566989-20567008 | MS.gene46806:intron | 25.0% |
| AAAAATATGGAAGACAAGCT+AGG | - | chr3.3:20569231-20569250 | None:intergenic | 30.0% | |
| AATTGTTCACTTCATCTCTT+TGG | + | chr3.3:20569259-20569278 | MS.gene46806:intron | 30.0% | |
| AATTTATATGGGTGTTTGTG+TGG | + | chr3.3:20566386-20566405 | MS.gene46806:intron | 30.0% | |
| ACACTAAAAAGCAAGTCAAT+TGG | - | chr3.3:20567883-20567902 | None:intergenic | 30.0% | |
| ACATACAAAAGATACACTCA+AGG | + | chr3.3:20567131-20567150 | MS.gene46806:intron | 30.0% | |
| ACTAAAAAGCAAGTCAATTG+GGG | - | chr3.3:20567881-20567900 | None:intergenic | 30.0% | |
| ACTAACAACATACAACATTG+GGG | - | chr3.3:20567244-20567263 | None:intergenic | 30.0% | |
| AGAAAGTCATGGTAATAGAT+TGG | + | chr3.3:20569401-20569420 | MS.gene46806:intron | 30.0% | |
| AGAGGAAACAATAATGGTTA+GGG | + | chr3.3:20567624-20567643 | MS.gene46806:intron | 30.0% | |
| AGTGTTAAATTGCAAATAGG+GGG | + | chr3.3:20567898-20567917 | MS.gene46806:intron | 30.0% | |
| ATAATTATGAGAGTGATAGG+TGG | + | chr3.3:20567535-20567554 | MS.gene46806:intron | 30.0% | |
| ATGGCAATAATTTGAGTGAT+TGG | + | chr3.3:20568269-20568288 | MS.gene46806:intron | 30.0% | |
| ATTAAGAGACTATTGTGACA+CGG | + | chr3.3:20567405-20567424 | MS.gene46806:intron | 30.0% | |
| ATTCAGACATAATCATTTGG+AGG | - | chr3.3:20568389-20568408 | None:intergenic | 30.0% | |
| CACACAAAATTGCATGATTA+AGG | - | chr3.3:20569739-20569758 | None:intergenic | 30.0% | |
| CACTAAAAAGCAAGTCAATT+GGG | - | chr3.3:20567882-20567901 | None:intergenic | 30.0% | |
| CAGTTGAAATACACACATAA+GGG | + | chr3.3:20569003-20569022 | MS.gene46806:intron | 30.0% | |
| CCTTCAGAAATCAATCTTAA+GGG | - | chr3.3:20567659-20567678 | None:intergenic | 30.0% | |
| GCTGGCAAGTTTAATATTTA+AGG | - | chr3.3:20569353-20569372 | None:intergenic | 30.0% | |
| GTGAAAAGAAATAAGAAACC+TGG | - | chr3.3:20569078-20569097 | None:intergenic | 30.0% | |
| TAAATACCTGATCAACGAAA+CGG | - | chr3.3:20569666-20569685 | None:intergenic | 30.0% | |
| TAAGAAACCTGGACAATAAA+CGG | - | chr3.3:20569067-20569086 | None:intergenic | 30.0% | |
| TAAGTAACTAACCTGATTCA+GGG | - | chr3.3:20568975-20568994 | None:intergenic | 30.0% | |
| TACATACAAGTCTAAATGGA+AGG | - | chr3.3:20567726-20567745 | None:intergenic | 30.0% | |
| TAGAAATTGAAATTCAGGAC+TGG | + | chr3.3:20568245-20568264 | MS.gene46806:intron | 30.0% | |
| TAGTTATATACTTCAAGTCC+AGG | - | chr3.3:20568336-20568355 | None:intergenic | 30.0% | |
| TATCATAGCAAAGGACTATT+TGG | + | chr3.3:20568493-20568512 | MS.gene46806:intron | 30.0% | |
| TCAGTTGAAATACACACATA+AGG | + | chr3.3:20569002-20569021 | MS.gene46806:intron | 30.0% | |
| TGAAAAGGGAATTTAGTGAA+GGG | + | chr3.3:20567594-20567613 | MS.gene46806:intron | 30.0% | |
| TTGAAAAGGGAATTTAGTGA+AGG | + | chr3.3:20567593-20567612 | MS.gene46806:intron | 30.0% | |
| TTGATCCTCAAATATGTCTT+TGG | - | chr3.3:20567309-20567328 | None:intergenic | 30.0% | |
| TTGCATCTTCTGTTGAAATA+CGG | + | chr3.3:20569039-20569058 | MS.gene46806:intron | 30.0% | |
| ! | AATTTTACAGATATCCCTCT+GGG | + | chr3.3:20569582-20569601 | MS.gene46806:intron | 30.0% |
| ! | GTACATGTATACCAGAATTT+TGG | - | chr3.3:20567952-20567971 | None:intergenic | 30.0% |
| ! | TCATGGACTAAAATGACTAA+GGG | - | chr3.3:20567107-20567126 | None:intergenic | 30.0% |
| ! | TCTCTGACATTTTTATATCG+AGG | + | chr3.3:20566256-20566275 | MS.gene46806:intron | 30.0% |
| ! | TTCATGCATCTTAGTGTTTT+GGG | + | chr3.3:20568864-20568883 | MS.gene46806:intron | 30.0% |
| ! | TTCATGGACTAAAATGACTA+AGG | - | chr3.3:20567108-20567127 | None:intergenic | 30.0% |
| ! | TTTCATGCATCTTAGTGTTT+TGG | + | chr3.3:20568863-20568882 | MS.gene46806:intron | 30.0% |
| !! | TATACCAGAATTTTGGTCAA+GGG | - | chr3.3:20567945-20567964 | None:intergenic | 30.0% |
| !! | TTTGACTTGGTGATTACTTA+TGG | + | chr3.3:20568194-20568213 | MS.gene46806:intron | 30.0% |
| !!! | GTACAGACATTTTGGTTTTT+TGG | + | chr3.3:20566837-20566856 | MS.gene46806:intron | 30.0% |
| AAGAAACCTGGACAATAAAC+GGG | - | chr3.3:20569066-20569085 | None:intergenic | 35.0% | |
| AAGAAGCAAAACTAAGTCTG+TGG | - | chr3.3:20568895-20568914 | None:intergenic | 35.0% | |
| AAGTAACTAACCTGATTCAG+GGG | - | chr3.3:20568974-20568993 | None:intergenic | 35.0% | |
| ACCAACCAAAGACATATTTG+AGG | + | chr3.3:20567301-20567320 | MS.gene46806:intron | 35.0% | |
| AGTTAATTATCAGGTACGGA+TGG | + | chr3.3:20568787-20568806 | MS.gene46806:intron | 35.0% | |
| ATAGTTCACTTTGGACAATG+AGG | - | chr3.3:20568016-20568035 | None:intergenic | 35.0% | |
| ATGCTTTGGTATCATAGCAA+AGG | + | chr3.3:20568484-20568503 | MS.gene46806:intron | 35.0% | |
| ATGTCTGAGAGAAAATTGTG+AGG | + | chr3.3:20566335-20566354 | MS.gene46806:intron | 35.0% | |
| CAAAGTGAACTATATTGCTG+CGG | + | chr3.3:20568023-20568042 | MS.gene46806:intron | 35.0% | |
| CTAAAAAGCAAGTCAATTGG+GGG | - | chr3.3:20567880-20567899 | None:intergenic | 35.0% | |
| CTAACAACATACAACATTGG+GGG | - | chr3.3:20567243-20567262 | None:intergenic | 35.0% | |
| CTAAGTAACTAACCTGATTC+AGG | - | chr3.3:20568976-20568995 | None:intergenic | 35.0% | |
| GAAAAGGGAATTTAGTGAAG+GGG | + | chr3.3:20567595-20567614 | MS.gene46806:intron | 35.0% | |
| GAGAGGAAACAATAATGGTT+AGG | + | chr3.3:20567623-20567642 | MS.gene46806:intron | 35.0% | |
| GATATAGAGATAGAGAGAGA+GGG | - | chr3.3:20566186-20566205 | None:intergenic | 35.0% | |
| GCCTTCAGAAATCAATCTTA+AGG | - | chr3.3:20567660-20567679 | None:intergenic | 35.0% | |
| GTAAACCTGCATGAATAGAA+AGG | - | chr3.3:20568637-20568656 | None:intergenic | 35.0% | |
| GTTAATTATCAGGTACGGAT+GGG | + | chr3.3:20568788-20568807 | MS.gene46806:intron | 35.0% | |
| TAAATACCGTTTCGTTGATC+AGG | + | chr3.3:20569657-20569676 | MS.gene46806:CDS | 35.0% | |
| TATGAGCTGAAGTAATGCTT+TGG | + | chr3.3:20568470-20568489 | MS.gene46806:intron | 35.0% | |
| TCCTCAAATATGTCTTTGGT+TGG | - | chr3.3:20567305-20567324 | None:intergenic | 35.0% | |
| TGATATAGAGATAGAGAGAG+AGG | - | chr3.3:20566187-20566206 | None:intergenic | 35.0% | |
| TGCATCTTCTGTTGAAATAC+GGG | + | chr3.3:20569040-20569059 | MS.gene46806:intron | 35.0% | |
| TGTCTGAGAGAAAATTGTGA+GGG | + | chr3.3:20566336-20566355 | MS.gene46806:intron | 35.0% | |
| TTCGCATACACACTGTATTA+AGG | + | chr3.3:20568058-20568077 | MS.gene46806:intron | 35.0% | |
| ! | AAGATCCAAACTCCTTTTCT+GGG | + | chr3.3:20567836-20567855 | MS.gene46806:intron | 35.0% |
| ! | AAGGCTTGCTTAATTTCTGA+AGG | + | chr3.3:20567675-20567694 | MS.gene46806:intron | 35.0% |
| ! | ATTGAAATTCAGGACTGGTA+TGG | + | chr3.3:20568250-20568269 | MS.gene46806:intron | 35.0% |
| ! | ATTTACAAACCCTTTTCACG+TGG | + | chr3.3:20568679-20568698 | MS.gene46806:CDS | 35.0% |
| ! | CAATTTTACAGATATCCCTC+TGG | + | chr3.3:20569581-20569600 | MS.gene46806:intron | 35.0% |
| ! | CCCTTAAGATTGATTTCTGA+AGG | + | chr3.3:20567656-20567675 | MS.gene46806:intron | 35.0% |
| ! | CTTGCAGGTTTTTGCATTTT+TGG | + | chr3.3:20568922-20568941 | MS.gene46806:intron | 35.0% |
| ! | TAAGATCCAAACTCCTTTTC+TGG | + | chr3.3:20567835-20567854 | MS.gene46806:intron | 35.0% |
| ! | TCATGCATCTTAGTGTTTTG+GGG | + | chr3.3:20568865-20568884 | MS.gene46806:intron | 35.0% |
| ! | TCTATTCTCTCTCTAGAAGA+AGG | - | chr3.3:20569377-20569396 | None:intergenic | 35.0% |
| ! | TGTAATTACAAGTGTCGTGT+CGG | + | chr3.3:20566742-20566761 | MS.gene46806:intron | 35.0% |
| ! | TTTTGTGTTCCACGTGAAAA+GGG | - | chr3.3:20568691-20568710 | None:intergenic | 35.0% |
| !! | AATTAGTCTTGCCAGGTTAT+CGG | + | chr3.3:20569846-20569865 | MS.gene46806:CDS | 35.0% |
| !! | AATTTAACTTGACTCTGCAC+TGG | + | chr3.3:20569786-20569805 | MS.gene46806:CDS | 35.0% |
| !! | CATGGTAATAGATTGGTTTG+TGG | + | chr3.3:20569408-20569427 | MS.gene46806:intron | 35.0% |
| !! | GTATACCAGAATTTTGGTCA+AGG | - | chr3.3:20567946-20567965 | None:intergenic | 35.0% |
| !! | TGTTTAGCTCTATAGTATCC+TGG | + | chr3.3:20568315-20568334 | MS.gene46806:intron | 35.0% |
| !! | TTTTTGGTCCTGAGATAAGT+CGG | + | chr3.3:20566853-20566872 | MS.gene46806:intron | 35.0% |
| AACTTTGCGTGCTCTTTAGT+CGG | - | chr3.3:20569619-20569638 | None:intergenic | 40.0% | |
| AGTATCAGTGAAAGAAGCGA+TGG | - | chr3.3:20566120-20566139 | None:intergenic | 40.0% | |
| ATAGAAGTCACACCCAGAAA+AGG | - | chr3.3:20567851-20567870 | None:intergenic | 40.0% | |
| CAAGGGAACAAGTATAACTC+AGG | - | chr3.3:20567928-20567947 | None:intergenic | 40.0% | |
| CGACAAAGGAGTGAATCAAT+GGG | - | chr3.3:20568542-20568561 | None:intergenic | 40.0% | |
| CGCAGCAATATAGTTCACTT+TGG | - | chr3.3:20568025-20568044 | None:intergenic | 40.0% | |
| GACACGGTCTCACATATTTA+AGG | + | chr3.3:20567421-20567440 | MS.gene46806:intron | 40.0% | |
| GAGTGAACAGCTATGAAACA+CGG | + | chr3.3:20566654-20566673 | MS.gene46806:intron | 40.0% | |
| GGAACAAGTATAACTCAGGT+TGG | - | chr3.3:20567924-20567943 | None:intergenic | 40.0% | |
| GGATCTCAGTTATACAGAGT+GGG | + | chr3.3:20568290-20568309 | MS.gene46806:intron | 40.0% | |
| GTCTTCTTCATTAGCGACTA+AGG | - | chr3.3:20567988-20568007 | None:intergenic | 40.0% | |
| TAGCAAAGGACTATTTGGCT+AGG | + | chr3.3:20568498-20568517 | MS.gene46806:intron | 40.0% | |
| TGAACTTGAACAGAAGGAGA+AGG | - | chr3.3:20566152-20566171 | None:intergenic | 40.0% | |
| TGAAGCTGTCATCTCAACAA+TGG | - | chr3.3:20569445-20569464 | None:intergenic | 40.0% | |
| TGGATCTCAGTTATACAGAG+TGG | + | chr3.3:20568289-20568308 | MS.gene46806:intron | 40.0% | |
| TGTTCCCTTGACCAAAATTC+TGG | + | chr3.3:20567938-20567957 | MS.gene46806:intron | 40.0% | |
| TTAGTGAAGGGGAAAAAGAG+AGG | + | chr3.3:20567606-20567625 | MS.gene46806:intron | 40.0% | |
| TTTCACGTGGAACACAAAAC+AGG | + | chr3.3:20568692-20568711 | MS.gene46806:CDS | 40.0% | |
| ! | ACTCACTCGCAATTTTCTCT+CGG | + | chr3.3:20566206-20566225 | MS.gene46806:intron | 40.0% |
| ! | CACGGGTTTCTTATTTGACT+TGG | + | chr3.3:20568181-20568200 | MS.gene46806:intron | 40.0% |
| ! | CATGCAATTTTGTGTGTCCA+GGG | + | chr3.3:20569743-20569762 | MS.gene46806:intron | 40.0% |
| ! | CTTGGTGATTACTTATGGCT+TGG | + | chr3.3:20568199-20568218 | MS.gene46806:intron | 40.0% |
| ! | GCAAACATTTTGCCAGTCTT+CGG | - | chr3.3:20569821-20569840 | None:intergenic | 40.0% |
| ! | GGTGTACTGTACAGACATTT+TGG | + | chr3.3:20566829-20566848 | MS.gene46806:intron | 40.0% |
| ! | GTTTTGTGTTCCACGTGAAA+AGG | - | chr3.3:20568692-20568711 | None:intergenic | 40.0% |
| ! | TCATGCAATTTTGTGTGTCC+AGG | + | chr3.3:20569742-20569761 | MS.gene46806:intron | 40.0% |
| ! | TGCTTCTTTTCTATGCTTGC+AGG | + | chr3.3:20568907-20568926 | MS.gene46806:intron | 40.0% |
| ! | TTCTCCTTCTGTTCAAGTTC+AGG | + | chr3.3:20566151-20566170 | MS.gene46806:intron | 40.0% |
| !! | GCTGATAAATTAGTCTTGCC+AGG | + | chr3.3:20569839-20569858 | MS.gene46806:CDS | 40.0% |
| !! | TGTAGGTGTTGAATGTCAAC+TGG | + | chr3.3:20566410-20566429 | MS.gene46806:intron | 40.0% |
| ACAGCTATGAAACACGGACA+CGG | + | chr3.3:20566660-20566679 | MS.gene46806:intron | 45.0% | |
| ACCAAGAATCGTAACCGCAA+AGG | - | chr3.3:20566087-20566106 | None:intergenic | 45.0% | |
| ACCTTTGCGGTTACGATTCT+TGG | + | chr3.3:20566083-20566102 | MS.gene46806:CDS | 45.0% | |
| AGACTGACACTTGCACATCA+CGG | + | chr3.3:20568163-20568182 | MS.gene46806:intron | 45.0% | |
| ATAGGTAAACCGAGCGACAA+AGG | - | chr3.3:20568556-20568575 | None:intergenic | 45.0% | |
| ATGGGTGTTTGTGTGGATGT+AGG | + | chr3.3:20566393-20566412 | MS.gene46806:intron | 45.0% | |
| ATTTACCTCGTCATTGCCGT+TGG | - | chr3.3:20566449-20566468 | None:intergenic | 45.0% | |
| CGACTAAGGTGCACAAAATC+TGG | - | chr3.3:20567974-20567993 | None:intergenic | 45.0% | |
| GAGAGCCTTTCTATTCATGC+AGG | + | chr3.3:20568629-20568648 | MS.gene46806:intron | 45.0% | |
| GCGAAGACACATCTATCTGA+GGG | - | chr3.3:20569499-20569518 | None:intergenic | 45.0% | |
| GCGACAAAGGAGTGAATCAA+TGG | - | chr3.3:20568543-20568562 | None:intergenic | 45.0% | |
| GGTACCTGAACTTGAACAGA+AGG | - | chr3.3:20566158-20566177 | None:intergenic | 45.0% | |
| GTGCTCTTTAGTCGGAATGA+TGG | - | chr3.3:20569611-20569630 | None:intergenic | 45.0% | |
| TATGAAGCACAGACACTCCT+CGG | - | chr3.3:20566809-20566828 | None:intergenic | 45.0% | |
| TCACACCCAGAAAAGGAGTT+TGG | - | chr3.3:20567844-20567863 | None:intergenic | 45.0% | |
| TCTCTGTCTCTCTCTCTGTA+AGG | + | chr3.3:20567481-20567500 | MS.gene46806:intron | 45.0% | |
| TGATTCACTCCTTTGTCGCT+CGG | + | chr3.3:20568544-20568563 | MS.gene46806:intron | 45.0% | |
| TGCGAAGACACATCTATCTG+AGG | - | chr3.3:20569500-20569519 | None:intergenic | 45.0% | |
| TGGAGGTTTGACAGCACAAT+TGG | - | chr3.3:20568372-20568391 | None:intergenic | 45.0% | |
| TGGTTTCAGAAACAGCCCAA+CGG | + | chr3.3:20566430-20566449 | MS.gene46806:CDS | 45.0% | |
| TTTACCTCGTCATTGCCGTT+GGG | - | chr3.3:20566448-20566467 | None:intergenic | 45.0% | |
| TTTGGACCCTAAACGTGTGA+GGG | - | chr3.3:20567198-20567217 | None:intergenic | 45.0% | |
| ! | GAACGCTTTGTTCACCTTTG+CGG | + | chr3.3:20566070-20566089 | MS.gene46806:CDS | 45.0% |
| ! | GACAATGACCGACTTATCTC+AGG | - | chr3.3:20566864-20566883 | None:intergenic | 45.0% |
| ! | TTTTGGACCCTAAACGTGTG+AGG | - | chr3.3:20567199-20567218 | None:intergenic | 45.0% |
| !!! | AATTATATCATTTTTTTTTT+CGG | + | chr3.3:20566561-20566580 | MS.gene46806:intron | 5.0% |
| ACCTGATTCAGGGGATGCTT+TGG | - | chr3.3:20568965-20568984 | None:intergenic | 50.0% | |
| AGATAGAGAGAGAGGGAGAG+AGG | - | chr3.3:20566179-20566198 | None:intergenic | 50.0% | |
| ATATTGCTGCGGTTGAGCTC+AGG | + | chr3.3:20568034-20568053 | MS.gene46806:intron | 50.0% | |
| CTGTCTCTCTCTCTGTAAGG+TGG | + | chr3.3:20567484-20567503 | MS.gene46806:intron | 50.0% | |
| GACTGACACTTGCACATCAC+GGG | + | chr3.3:20568164-20568183 | MS.gene46806:intron | 50.0% | |
| GTCTGACACTGACACGACAT+TGG | + | chr3.3:20566521-20566540 | MS.gene46806:intron | 50.0% | |
| TGACACCCCTCACACGTTTA+GGG | + | chr3.3:20567189-20567208 | MS.gene46806:intron | 50.0% | |
| TTGACACCCCTCACACGTTT+AGG | + | chr3.3:20567188-20567207 | MS.gene46806:intron | 50.0% | |
| TTGGACCCTAAACGTGTGAG+GGG | - | chr3.3:20567197-20567216 | None:intergenic | 50.0% | |
| ! | CTCTCTCTAGAAGAAGGAGC+TGG | - | chr3.3:20569371-20569390 | None:intergenic | 50.0% |
| ! | TACAAGTGTCGTGTCGGTGT+CGG | + | chr3.3:20566748-20566767 | MS.gene46806:intron | 50.0% |
| ! | TCCAAAGCATCCCCTGAATC+AGG | + | chr3.3:20568961-20568980 | MS.gene46806:CDS | 50.0% |
| !! | GAGGAGTGTCTGTGCTTCAT+AGG | + | chr3.3:20566808-20566827 | MS.gene46806:intron | 50.0% |
| CGGAATGATGGCATCCCAGA+GGG | - | chr3.3:20569599-20569618 | None:intergenic | 55.0% | |
| GATTAGGCGTGTCCCAGTGT+CGG | - | chr3.3:20566787-20566806 | None:intergenic | 55.0% | |
| GCACAGACACTCCTCGGATT+AGG | - | chr3.3:20566803-20566822 | None:intergenic | 55.0% | |
| GTCCAGGGAAGCAATTTGCG+CGG | + | chr3.3:20569758-20569777 | MS.gene46806:intron | 55.0% | |
| TACGGGCCCGTTTATTGTCC+AGG | + | chr3.3:20569057-20569076 | MS.gene46806:intron | 55.0% | |
| TCGGAATGATGGCATCCCAG+AGG | - | chr3.3:20569600-20569619 | None:intergenic | 55.0% | |
| TGAAACACGGACACGGACAC+CGG | + | chr3.3:20566667-20566686 | MS.gene46806:intron | 55.0% | |
| TGGCATGTCATGCCGAAGAC+TGG | + | chr3.3:20569806-20569825 | MS.gene46806:CDS | 55.0% | |
| TGTGCAGGCAACCGATAACC+TGG | - | chr3.3:20569860-20569879 | None:intergenic | 55.0% | |
| TTCCGCGCAAATTGCTTCCC+TGG | - | chr3.3:20569763-20569782 | None:intergenic | 55.0% | |
| !! | GTCGGTGTCGTGTCATGTGT+CGG | + | chr3.3:20566595-20566614 | MS.gene46806:intron | 55.0% |
| ACACGTGTCGTGTCCGACAC+TGG | + | chr3.3:20566771-20566790 | MS.gene46806:intron | 60.0% | |
| ACAGCCCAACGGCAATGACG+AGG | + | chr3.3:20566441-20566460 | MS.gene46806:CDS | 60.0% | |
| ACTGGGACACGCCTAATCCG+AGG | + | chr3.3:20566789-20566808 | MS.gene46806:intron | 60.0% | |
| CACGTGTCGTGTCCGACACT+GGG | + | chr3.3:20566772-20566791 | MS.gene46806:intron | 60.0% | |
| GTCAGTGTCCGTGTCGTGTC+CGG | - | chr3.3:20566689-20566708 | None:intergenic | 60.0% | |
| CACGGACACCGGACACGACA+CGG | + | chr3.3:20566678-20566697 | MS.gene46806:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 20566047 | 20569889 | 20566047 | ID=MS.gene46806 |
| chr3.3 | mRNA | 20566047 | 20569889 | 20566047 | ID=MS.gene46806.t1;Parent=MS.gene46806 |
| chr3.3 | exon | 20566047 | 20566166 | 20566047 | ID=MS.gene46806.t1.exon1;Parent=MS.gene46806.t1 |
| chr3.3 | CDS | 20566047 | 20566166 | 20566047 | ID=cds.MS.gene46806.t1;Parent=MS.gene46806.t1 |
| chr3.3 | exon | 20566415 | 20566462 | 20566415 | ID=MS.gene46806.t1.exon2;Parent=MS.gene46806.t1 |
| chr3.3 | CDS | 20566415 | 20566462 | 20566415 | ID=cds.MS.gene46806.t1;Parent=MS.gene46806.t1 |
| chr3.3 | exon | 20568651 | 20568713 | 20568651 | ID=MS.gene46806.t1.exon3;Parent=MS.gene46806.t1 |
| chr3.3 | CDS | 20568651 | 20568713 | 20568651 | ID=cds.MS.gene46806.t1;Parent=MS.gene46806.t1 |
| chr3.3 | exon | 20568929 | 20568982 | 20568929 | ID=MS.gene46806.t1.exon4;Parent=MS.gene46806.t1 |
| chr3.3 | CDS | 20568929 | 20568982 | 20568929 | ID=cds.MS.gene46806.t1;Parent=MS.gene46806.t1 |
| chr3.3 | exon | 20569592 | 20569678 | 20569592 | ID=MS.gene46806.t1.exon5;Parent=MS.gene46806.t1 |
| chr3.3 | CDS | 20569592 | 20569678 | 20569592 | ID=cds.MS.gene46806.t1;Parent=MS.gene46806.t1 |
| chr3.3 | exon | 20569764 | 20569889 | 20569764 | ID=MS.gene46806.t1.exon6;Parent=MS.gene46806.t1 |
| chr3.3 | CDS | 20569764 | 20569889 | 20569764 | ID=cds.MS.gene46806.t1;Parent=MS.gene46806.t1 |
| Gene Sequence |
| Protein sequence |
