Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072455.t1 | XP_003626310.1 | 98.2 | 167 | 3 | 0 | 1 | 167 | 1 | 167 | 1.30E-89 | 339 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072455.t1 | Q53YF3 | 78.4 | 167 | 36 | 0 | 1 | 167 | 1 | 167 | 2.6e-75 | 282.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072455.t1 | Q2HTM7 | 98.2 | 167 | 3 | 0 | 1 | 167 | 1 | 167 | 9.2e-90 | 339.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049756 | MS.gene072455 | 0.800237 | 1.58E-48 | -1.69E-46 |
| MS.gene04984 | MS.gene072455 | 0.806495 | 8.00E-50 | -1.69E-46 |
| MS.gene050277 | MS.gene072455 | 0.816257 | 6.07E-52 | -1.69E-46 |
| MS.gene050320 | MS.gene072455 | 0.811936 | 5.46E-51 | -1.69E-46 |
| MS.gene050439 | MS.gene072455 | 0.824515 | 7.74E-54 | -1.69E-46 |
| MS.gene050719 | MS.gene072455 | 0.82255 | 2.23E-53 | -1.69E-46 |
| MS.gene050721 | MS.gene072455 | 0.827379 | 1.62E-54 | -1.69E-46 |
| MS.gene050838 | MS.gene072455 | 0.808248 | 3.40E-50 | -1.69E-46 |
| MS.gene051063 | MS.gene072455 | 0.814677 | 1.36E-51 | -1.69E-46 |
| MS.gene051746 | MS.gene072455 | 0.832786 | 7.75E-56 | -1.69E-46 |
| MS.gene051748 | MS.gene072455 | 0.833836 | 4.24E-56 | -1.69E-46 |
| MS.gene051756 | MS.gene072455 | 0.814205 | 1.73E-51 | -1.69E-46 |
| MS.gene051757 | MS.gene072455 | 0.853868 | 1.80E-61 | -1.69E-46 |
| MS.gene051903 | MS.gene072455 | 0.833282 | 5.83E-56 | -1.69E-46 |
| MS.gene053109 | MS.gene072455 | 0.818502 | 1.90E-52 | -1.69E-46 |
| MS.gene053952 | MS.gene072455 | 0.806563 | 7.74E-50 | -1.69E-46 |
| MS.gene05469 | MS.gene072455 | 0.802297 | 6.00E-49 | -1.69E-46 |
| MS.gene055603 | MS.gene072455 | 0.811902 | 5.55E-51 | -1.69E-46 |
| MS.gene056091 | MS.gene072455 | 0.801437 | 9.01E-49 | -1.69E-46 |
| MS.gene056432 | MS.gene072455 | 0.82206 | 2.90E-53 | -1.69E-46 |
| MS.gene056631 | MS.gene072455 | 0.844157 | 8.99E-59 | -1.69E-46 |
| MS.gene056638 | MS.gene072455 | 0.808511 | 2.99E-50 | -1.69E-46 |
| MS.gene056760 | MS.gene072455 | 0.802287 | 6.03E-49 | -1.69E-46 |
| MS.gene056986 | MS.gene072455 | 0.815312 | 9.86E-52 | -1.69E-46 |
| MS.gene057094 | MS.gene072455 | 0.82077 | 5.75E-53 | -1.69E-46 |
| MS.gene057140 | MS.gene072455 | 0.80618 | 9.32E-50 | -1.69E-46 |
| MS.gene057360 | MS.gene072455 | 0.812089 | 5.05E-51 | -1.69E-46 |
| MS.gene058238 | MS.gene072455 | 0.820589 | 6.33E-53 | -1.69E-46 |
| MS.gene058906 | MS.gene072455 | 0.867227 | 1.60E-65 | -1.69E-46 |
| MS.gene058911 | MS.gene072455 | 0.801842 | 7.44E-49 | -1.69E-46 |
| MS.gene059774 | MS.gene072455 | 0.814508 | 1.49E-51 | -1.69E-46 |
| MS.gene06001 | MS.gene072455 | 0.865804 | 4.53E-65 | -1.69E-46 |
| MS.gene06011 | MS.gene072455 | 0.807988 | 3.86E-50 | -1.69E-46 |
| MS.gene060697 | MS.gene072455 | 0.815598 | 8.52E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene29323 | MS.gene072455 | PPI |
| MS.gene67564 | MS.gene072455 | PPI |
| MS.gene072455 | MS.gene46806 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072455.t1 | MTR_7g113740 | 98.204 | 167 | 3 | 0 | 1 | 167 | 1 | 167 | 1.20e-123 | 345 |
| MS.gene072455.t1 | MTR_3g027890 | 82.036 | 167 | 30 | 0 | 1 | 167 | 1 | 167 | 5.37e-108 | 305 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072455.t1 | AT5G27430 | 78.443 | 167 | 36 | 0 | 1 | 167 | 1 | 167 | 1.39e-101 | 289 |
| MS.gene072455.t1 | AT3G05230 | 75.449 | 167 | 41 | 0 | 1 | 167 | 1 | 167 | 5.73e-98 | 280 |
| MS.gene072455.t1 | AT3G05230 | 73.810 | 126 | 33 | 0 | 1 | 126 | 1 | 126 | 2.50e-69 | 206 |
Find 36 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTGATTCAAGGGTTTCTT+TGG | 0.249498 | 7.3:-3161566 | None:intergenic |
| AAATTCTCTACCACGCAAAT+TGG | 0.318602 | 7.3:-3162045 | None:intergenic |
| AGCATGACACTTAATATTTC+AGG | 0.320278 | 7.3:+3161362 | MS.gene072455:CDS |
| AAACTTTGCATGCTCTTTAG+AGG | 0.327720 | 7.3:-3161892 | None:intergenic |
| TGTAGGTGTTGAATATTAAT+TGG | 0.336117 | 7.3:+3159633 | MS.gene072455:intron |
| TAAATACCGTTTCATTGATC+AGG | 0.381152 | 7.3:+3161932 | MS.gene072455:CDS |
| AGAAGGAGATGGAGAATTGA+AGG | 0.420356 | 7.3:-3159509 | None:intergenic |
| ACCAAAGAAACCCTTGAATC+AGG | 0.421703 | 7.3:+3161565 | MS.gene072455:CDS |
| ATCTGTATTCCCTGGGCAAT+CGG | 0.431457 | 7.3:-3162142 | None:intergenic |
| ATCTCCTTCTGCTCAAGTCC+AGG | 0.434481 | 7.3:+3159522 | MS.gene072455:CDS |
| AATTACCTCGTCGTTACCGT+TGG | 0.465299 | 7.3:-3159669 | None:intergenic |
| ATTACCTCGTCGTTACCGTT+GGG | 0.472005 | 7.3:-3159668 | None:intergenic |
| GTTCACGTGGAACACAAAAC+AGG | 0.477621 | 7.3:+3161400 | MS.gene072455:CDS |
| AAGGCATCATCTGTATTCCC+TGG | 0.485485 | 7.3:-3162150 | None:intergenic |
| CATACATCATACCTGATTCA+AGG | 0.490102 | 7.3:-3161576 | None:intergenic |
| TCCCTGGGCAATCGGTAACC+TGG | 0.493808 | 7.3:-3162134 | None:intergenic |
| AACTTTGCATGCTCTTTAGA+GGG | 0.517084 | 7.3:-3161891 | None:intergenic |
| ACTCCGAGAATGCATTCATT+CGG | 0.527592 | 7.3:+3159409 | None:intergenic |
| TGCCAGGTTACCGATTGCCC+AGG | 0.539181 | 7.3:+3162132 | MS.gene072455:CDS |
| GGGAATGATACCATCCCAAA+GGG | 0.544276 | 7.3:-3161871 | None:intergenic |
| AATTTAACTTGACCTTGCAC+TGG | 0.545173 | 7.3:+3162063 | MS.gene072455:CDS |
| TATATACCTGATCAATGAAA+CGG | 0.547986 | 7.3:-3161938 | None:intergenic |
| GCTGATAAAATAGTAATGCC+AGG | 0.552824 | 7.3:+3162116 | MS.gene072455:CDS |
| TGGACTTGAGCAGAAGGAGA+TGG | 0.553502 | 7.3:-3159520 | None:intergenic |
| AGAAAATGTTAGCAAAGCGT+TGG | 0.554899 | 7.3:-3159440 | None:intergenic |
| GAGACCTGGACTTGAGCAGA+AGG | 0.562774 | 7.3:-3159526 | None:intergenic |
| TGGCATAACATGCCAGTGCA+AGG | 0.570110 | 7.3:-3162075 | None:intergenic |
| ATACATCATACCTGATTCAA+GGG | 0.573602 | 7.3:-3161575 | None:intergenic |
| TTACAGATATCCCTTTGGGA+TGG | 0.587335 | 7.3:+3161861 | MS.gene072455:intron |
| AGGCATCATCTGTATTCCCT+GGG | 0.600588 | 7.3:-3162149 | None:intergenic |
| GCCAGGTTACCGATTGCCCA+GGG | 0.602814 | 7.3:+3162133 | MS.gene072455:CDS |
| AGGGAATGATACCATCCCAA+AGG | 0.633639 | 7.3:-3161872 | None:intergenic |
| ATTTACAGTCTCTGTTCACG+TGG | 0.665261 | 7.3:+3161387 | MS.gene072455:CDS |
| GTACAGGGAACCAATTTGCG+TGG | 0.675868 | 7.3:+3162035 | MS.gene072455:intron |
| ACAACCCAACGGTAACGACG+AGG | 0.716822 | 7.3:+3159664 | MS.gene072455:CDS |
| TGGTTTCAGAAACAACCCAA+CGG | 0.718343 | 7.3:+3159653 | MS.gene072455:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATACTGTTTTTTTTTTTTTT+TGG | - | chr7.3:3160788-3160807 | None:intergenic | 10.0% |
| !!! | TTATTTTTATTTTTATGTGT+AGG | + | chr7.3:3159616-3159635 | MS.gene072455:intron | 10.0% |
| !! | AACTTTCTCTTATATTATTT+AGG | + | chr7.3:3160158-3160177 | MS.gene072455:intron | 15.0% |
| !! | TAAATAATATAAGAGAAAGT+TGG | - | chr7.3:3160159-3160178 | None:intergenic | 15.0% |
| !!! | GTTTTTTGCAAATAAATAAA+AGG | - | chr7.3:3160902-3160921 | None:intergenic | 15.0% |
| !!! | TTCAAACTTTTTTTTTTGAA+TGG | + | chr7.3:3161287-3161306 | MS.gene072455:intron | 15.0% |
| !! | AAATAAAAAAGGCAAAGTTA+AGG | - | chr7.3:3162013-3162032 | None:intergenic | 20.0% |
| !! | AAATAAATAAAAGGAGAGAT+TGG | - | chr7.3:3160893-3160912 | None:intergenic | 20.0% |
| !! | AATAAAGACAAAAAACTAAG+AGG | - | chr7.3:3161449-3161468 | None:intergenic | 20.0% |
| !! | AATAAATAAAAGGAGAGATT+GGG | - | chr7.3:3160892-3160911 | None:intergenic | 20.0% |
| !! | ATATGATACTCATAATAATG+TGG | - | chr7.3:3161198-3161217 | None:intergenic | 20.0% |
| !!! | TAGTTTTTTGTCTTTATTTC+AGG | + | chr7.3:3161451-3161470 | MS.gene072455:intron | 20.0% |
| !!! | TTTAATCGCTTGTTATAAAA+AGG | - | chr7.3:3161666-3161685 | None:intergenic | 20.0% |
| ! | AACAGTATAATTGTAGAACT+TGG | + | chr7.3:3160800-3160819 | MS.gene072455:intron | 25.0% |
| ! | ATAAATAAAAGGAGAGATTG+GGG | - | chr7.3:3160891-3160910 | None:intergenic | 25.0% |
| ! | ATATACTGTAACATGAATCA+GGG | - | chr7.3:3159897-3159916 | None:intergenic | 25.0% |
| ! | ATCAGGTATATAACTCTTAT+AGG | + | chr7.3:3161949-3161968 | MS.gene072455:intron | 25.0% |
| ! | CACAATCAGTTGAAAAAATA+AGG | - | chr7.3:3160398-3160417 | None:intergenic | 25.0% |
| ! | CCTATATATAAGAGAAAGTT+GGG | + | chr7.3:3160073-3160092 | MS.gene072455:intron | 25.0% |
| ! | TATATACCTGATCAATGAAA+CGG | - | chr7.3:3161941-3161960 | None:intergenic | 25.0% |
| ! | TCCTATATATAAGAGAAAGT+TGG | + | chr7.3:3160072-3160091 | MS.gene072455:intron | 25.0% |
| ! | TTACTTTATCCTTATGTCTA+TGG | + | chr7.3:3159842-3159861 | MS.gene072455:intron | 25.0% |
| ! | TTTATTTCAGGACAAAAGTT+GGG | + | chr7.3:3161463-3161482 | MS.gene072455:intron | 25.0% |
| !! | ATGTGATTTTGAATTACTGA+AGG | + | chr7.3:3159978-3159997 | MS.gene072455:intron | 25.0% |
| !! | TCTCTTATATTATTTAGGAC+TGG | + | chr7.3:3160163-3160182 | MS.gene072455:intron | 25.0% |
| !! | TTATATTATTTAGGACTGGA+GGG | + | chr7.3:3160167-3160186 | MS.gene072455:intron | 25.0% |
| !!! | CTACATACTTTTTTCAAAGA+TGG | + | chr7.3:3161137-3161156 | MS.gene072455:intron | 25.0% |
| !!! | TAATTGTGTCATTTAAGTTG+TGG | + | chr7.3:3159865-3159884 | MS.gene072455:intron | 25.0% |
| !!! | TATTGGTTCAAAATTTGGAT+CGG | - | chr7.3:3160119-3160138 | None:intergenic | 25.0% |
| !!! | TGATGTATTGGTTCAAAATT+TGG | - | chr7.3:3160124-3160143 | None:intergenic | 25.0% |
| !!! | TGTAGGTGTTGAATATTAAT+TGG | + | chr7.3:3159633-3159652 | MS.gene072455:intron | 25.0% |
| !!! | TTAGAAAGTGGGTTATATAA+GGG | + | chr7.3:3160560-3160579 | MS.gene072455:intron | 25.0% |
| AAAGAAAGACATGGTAATAG+TGG | + | chr7.3:3161684-3161703 | MS.gene072455:intron | 30.0% | |
| AAATCATAGCTGGAAATTGT+TGG | + | chr7.3:3161093-3161112 | MS.gene072455:intron | 30.0% | |
| AACATAAACCCTCTTAATCA+AGG | - | chr7.3:3160446-3160465 | None:intergenic | 30.0% | |
| AAGAAAGACATGGTAATAGT+GGG | + | chr7.3:3161685-3161704 | MS.gene072455:intron | 30.0% | |
| AAGCGATTAAAAGAAAGACA+TGG | + | chr7.3:3161675-3161694 | MS.gene072455:intron | 30.0% | |
| AATTGTTGGAAACATCATGT+TGG | + | chr7.3:3161107-3161126 | MS.gene072455:intron | 30.0% | |
| ACACAATTACCATAGACATA+AGG | - | chr7.3:3159854-3159873 | None:intergenic | 30.0% | |
| ACATAAACCCTCTTAATCAA+GGG | - | chr7.3:3160445-3160464 | None:intergenic | 30.0% | |
| ACTATCTTCCTTACTAACTA+AGG | + | chr7.3:3160933-3160952 | MS.gene072455:intron | 30.0% | |
| AGATTGTTACGAAAGATGTT+AGG | + | chr7.3:3160516-3160535 | MS.gene072455:intron | 30.0% | |
| AGCATGACACTTAATATTTC+AGG | + | chr7.3:3161362-3161381 | MS.gene072455:CDS | 30.0% | |
| AGGAAGATAGTGAAGAAATA+AGG | - | chr7.3:3160924-3160943 | None:intergenic | 30.0% | |
| AGTATAATTGTAGAACTTGG+AGG | + | chr7.3:3160803-3160822 | MS.gene072455:intron | 30.0% | |
| ATACATCATACCTGATTCAA+GGG | - | chr7.3:3161578-3161597 | None:intergenic | 30.0% | |
| ATTCGTTGTTCAAACTGAAA+TGG | + | chr7.3:3161316-3161335 | MS.gene072455:intron | 30.0% | |
| ATTTACATACAACAGACAAG+AGG | + | chr7.3:3161044-3161063 | MS.gene072455:intron | 30.0% | |
| CAGTTGAAAAGTTAGAAAGT+GGG | + | chr7.3:3160549-3160568 | MS.gene072455:intron | 30.0% | |
| CATATACTGTAACATGAATC+AGG | - | chr7.3:3159898-3159917 | None:intergenic | 30.0% | |
| CCCAACTTTCTCTTATATAT+AGG | - | chr7.3:3160076-3160095 | None:intergenic | 30.0% | |
| CTATAGTTATAAACTCCATC+CGG | + | chr7.3:3160049-3160068 | MS.gene072455:intron | 30.0% | |
| CTTTCTCTTATATATAGGAC+CGG | - | chr7.3:3160071-3160090 | None:intergenic | 30.0% | |
| GAATTACCTCAGATTTCTTT+AGG | + | chr7.3:3161987-3162006 | MS.gene072455:intron | 30.0% | |
| GACATTGAATATCAGAGAAA+GGG | - | chr7.3:3161253-3161272 | None:intergenic | 30.0% | |
| GATACTCATAATAATGTGGT+AGG | - | chr7.3:3161194-3161213 | None:intergenic | 30.0% | |
| GATTGTTACGAAAGATGTTA+GGG | + | chr7.3:3160517-3160536 | MS.gene072455:intron | 30.0% | |
| GGTATATGACTTCACATATA+AGG | - | chr7.3:3160336-3160355 | None:intergenic | 30.0% | |
| GTATAATTGTAGAACTTGGA+GGG | + | chr7.3:3160804-3160823 | MS.gene072455:intron | 30.0% | |
| TAAATAAAAGGAGAGATTGG+GGG | - | chr7.3:3160890-3160909 | None:intergenic | 30.0% | |
| TAAATACCGTTTCATTGATC+AGG | + | chr7.3:3161932-3161951 | MS.gene072455:CDS | 30.0% | |
| TAACATCTTTCGTAACAATC+TGG | - | chr7.3:3160517-3160536 | None:intergenic | 30.0% | |
| TACATCGAATCTTTCAGATT+TGG | - | chr7.3:3160994-3161013 | None:intergenic | 30.0% | |
| TACTACTTATACAGGGTATA+GGG | + | chr7.3:3160195-3160214 | MS.gene072455:intron | 30.0% | |
| TCAGTTGAAAAGTTAGAAAG+TGG | + | chr7.3:3160548-3160567 | MS.gene072455:intron | 30.0% | |
| TCCCTGTACACAAATAAAAA+AGG | - | chr7.3:3162024-3162043 | None:intergenic | 30.0% | |
| TGACATTGAATATCAGAGAA+AGG | - | chr7.3:3161254-3161273 | None:intergenic | 30.0% | |
| TGATTAAGAGGGTTTATGTT+AGG | + | chr7.3:3160446-3160465 | MS.gene072455:intron | 30.0% | |
| TTATTTCAGGACAAAAGTTG+GGG | + | chr7.3:3161464-3161483 | MS.gene072455:intron | 30.0% | |
| TTCATGTTACAGTATATGCA+AGG | + | chr7.3:3159900-3159919 | MS.gene072455:intron | 30.0% | |
| TTGGGTCAACAAAAGTTAAT+GGG | + | chr7.3:3160091-3160110 | MS.gene072455:intron | 30.0% | |
| ! | ATTGGTTCAAAATTTGGATC+GGG | - | chr7.3:3160118-3160137 | None:intergenic | 30.0% |
| ! | CATTTTACAGATATCCCTTT+GGG | + | chr7.3:3161857-3161876 | MS.gene072455:intron | 30.0% |
| ! | CTTATATTATTTAGGACTGG+AGG | + | chr7.3:3160166-3160185 | MS.gene072455:intron | 30.0% |
| ! | CTTCTTCATAAGACTCTTTT+TGG | - | chr7.3:3160279-3160298 | None:intergenic | 30.0% |
| ! | CTTTATTTCAGGACAAAAGT+TGG | + | chr7.3:3161462-3161481 | MS.gene072455:intron | 30.0% |
| ! | GCAATTCTTTCTGTTTTCTA+AGG | + | chr7.3:3160689-3160708 | MS.gene072455:intron | 30.0% |
| ! | GGAAGAAAGGAAACTAATTT+TGG | + | chr7.3:3161485-3161504 | MS.gene072455:intron | 30.0% |
| !! | GTTAGAAAGTGGGTTATATA+AGG | + | chr7.3:3160559-3160578 | MS.gene072455:intron | 30.0% |
| !!! | GCCTTTTTTATTTGTGTACA+GGG | + | chr7.3:3162020-3162039 | MS.gene072455:intron | 30.0% |
| !!! | TGCCTTTTTTATTTGTGTAC+AGG | + | chr7.3:3162019-3162038 | MS.gene072455:intron | 30.0% |
| AAACAGGTCAAAATCATAGC+TGG | + | chr7.3:3161083-3161102 | MS.gene072455:intron | 35.0% | |
| AAACTTTGCATGCTCTTTAG+AGG | - | chr7.3:3161895-3161914 | None:intergenic | 35.0% | |
| AAATTCTCTACCACGCAAAT+TGG | - | chr7.3:3162048-3162067 | None:intergenic | 35.0% | |
| AACTTTGCATGCTCTTTAGA+GGG | - | chr7.3:3161894-3161913 | None:intergenic | 35.0% | |
| ACTCATAATAATGTGGTAGG+CGG | - | chr7.3:3161191-3161210 | None:intergenic | 35.0% | |
| AGAAAATGTTAGCAAAGCGT+TGG | - | chr7.3:3159443-3159462 | None:intergenic | 35.0% | |
| AGTTGGCAAGCTTCAAATTT+AGG | - | chr7.3:3161643-3161662 | None:intergenic | 35.0% | |
| ATCAGGTATGATGTATGCTT+TGG | + | chr7.3:3161582-3161601 | MS.gene072455:intron | 35.0% | |
| ATCGAATCTTTCAGATTTGG+AGG | - | chr7.3:3160991-3161010 | None:intergenic | 35.0% | |
| ATGACTTCACATATAAGGCA+AGG | - | chr7.3:3160331-3160350 | None:intergenic | 35.0% | |
| ATTCGATGTAATTGCTTCAG+AGG | + | chr7.3:3161004-3161023 | MS.gene072455:intron | 35.0% | |
| CATACATCATACCTGATTCA+AGG | - | chr7.3:3161579-3161598 | None:intergenic | 35.0% | |
| CCAAAGGGATATCTGTAAAA+TGG | - | chr7.3:3161859-3161878 | None:intergenic | 35.0% | |
| CTACTACTTATACAGGGTAT+AGG | + | chr7.3:3160194-3160213 | MS.gene072455:intron | 35.0% | |
| GCCAAAAACTGGAAAAATGT+TGG | + | chr7.3:3162094-3162113 | MS.gene072455:CDS | 35.0% | |
| GCTGATAAAATAGTAATGCC+AGG | + | chr7.3:3162116-3162135 | MS.gene072455:CDS | 35.0% | |
| GTAGTTTGACGACTTCTAAT+AGG | - | chr7.3:3160969-3160988 | None:intergenic | 35.0% | |
| GTTGGGTCAACAAAAGTTAA+TGG | + | chr7.3:3160090-3160109 | MS.gene072455:intron | 35.0% | |
| TCTTCCTAGACAATACCATT+GGG | - | chr7.3:3160014-3160033 | None:intergenic | 35.0% | |
| TCTTCCTTACTAACTAAGGA+AGG | + | chr7.3:3160937-3160956 | MS.gene072455:intron | 35.0% | |
| TGAAGTCATATACCTTCTGT+TGG | + | chr7.3:3160342-3160361 | MS.gene072455:intron | 35.0% | |
| TGACTTCACATATAAGGCAA+GGG | - | chr7.3:3160330-3160349 | None:intergenic | 35.0% | |
| TGCTGAATAAACAGTGTAGT+CGG | + | chr7.3:3160648-3160667 | MS.gene072455:intron | 35.0% | |
| TTAAGGCCTAAAGAAATCTG+AGG | - | chr7.3:3161996-3162015 | None:intergenic | 35.0% | |
| TTTGAAAGATACGAGGTCTT+TGG | - | chr7.3:3160852-3160871 | None:intergenic | 35.0% | |
| ! | ATATATCAAGCACTGTGAAC+CGG | - | chr7.3:3160728-3160747 | None:intergenic | 35.0% |
| ! | CCATTTTACAGATATCCCTT+TGG | + | chr7.3:3161856-3161875 | MS.gene072455:intron | 35.0% |
| ! | CTTGTCATTTGAAAGATACG+AGG | - | chr7.3:3160859-3160878 | None:intergenic | 35.0% |
| ! | GCCAACATTTTTCCAGTTTT+TGG | - | chr7.3:3162098-3162117 | None:intergenic | 35.0% |
| ! | GGAGTACTACTACTTATACA+GGG | + | chr7.3:3160188-3160207 | MS.gene072455:intron | 35.0% |
| ! | TGCTTCTTTTCTATGCTTTC+AGG | + | chr7.3:3161511-3161530 | MS.gene072455:intron | 35.0% |
| ! | TTTTCATTTACCAGCTCGTT+TGG | + | chr7.3:3161225-3161244 | MS.gene072455:intron | 35.0% |
| !! | AATTTAACTTGACCTTGCAC+TGG | + | chr7.3:3162063-3162082 | MS.gene072455:CDS | 35.0% |
| !! | CGCTTGTTATAAAAAGGAGT+TGG | - | chr7.3:3161660-3161679 | None:intergenic | 35.0% |
| !! | CTCAACAAGAGTTGATGTAT+TGG | - | chr7.3:3160136-3160155 | None:intergenic | 35.0% |
| !! | GGAAGCATTATTATTCTTGC+AGG | + | chr7.3:3161337-3161356 | MS.gene072455:intron | 35.0% |
| AATCCCCAATGGTATTGTCT+AGG | + | chr7.3:3160007-3160026 | MS.gene072455:intron | 40.0% | |
| ACCAAAGAAACCCTTGAATC+AGG | + | chr7.3:3161565-3161584 | MS.gene072455:CDS | 40.0% | |
| ACCACAACCCTTGATTAAGA+GGG | + | chr7.3:3160435-3160454 | MS.gene072455:intron | 40.0% | |
| ACCTGATTCAAGGGTTTCTT+TGG | - | chr7.3:3161569-3161588 | None:intergenic | 40.0% | |
| AGAAGGAGATGGAGAATTGA+AGG | - | chr7.3:3159512-3159531 | None:intergenic | 40.0% | |
| AGGAATGCTCCCAAAATACA+AGG | - | chr7.3:3160610-3160629 | None:intergenic | 40.0% | |
| ATTTACAGTCTCTGTTCACG+TGG | + | chr7.3:3161387-3161406 | MS.gene072455:CDS | 40.0% | |
| CTCTCCTTCCTTAGTTAGTA+AGG | - | chr7.3:3160944-3160963 | None:intergenic | 40.0% | |
| CTCTTATATATAGGACCGGA+TGG | - | chr7.3:3160067-3160086 | None:intergenic | 40.0% | |
| CTCTTCCTAGACAATACCAT+TGG | - | chr7.3:3160015-3160034 | None:intergenic | 40.0% | |
| CTTCCTAGACAATACCATTG+GGG | - | chr7.3:3160013-3160032 | None:intergenic | 40.0% | |
| TACAGGGTATAGGGTATGAA+AGG | + | chr7.3:3160204-3160223 | MS.gene072455:intron | 40.0% | |
| TACTTGTGTGTGCATGAAAC+AGG | + | chr7.3:3161067-3161086 | MS.gene072455:intron | 40.0% | |
| TGGCATGTTATGCCAAAAAC+TGG | + | chr7.3:3162083-3162102 | MS.gene072455:CDS | 40.0% | |
| TGGTTTCAGAAACAACCCAA+CGG | + | chr7.3:3159653-3159672 | MS.gene072455:CDS | 40.0% | |
| TTATGTTAGGCGAAAGAAGC+AGG | + | chr7.3:3160459-3160478 | MS.gene072455:intron | 40.0% | |
| ! | CGGATGGTACCTTGTATTTT+GGG | + | chr7.3:3160598-3160617 | MS.gene072455:intron | 40.0% |
| ! | TTACAGATATCCCTTTGGGA+TGG | + | chr7.3:3161861-3161880 | MS.gene072455:intron | 40.0% |
| !! | AAGACATGGTAATAGTGGGT+TGG | + | chr7.3:3161689-3161708 | MS.gene072455:intron | 40.0% |
| !! | GGGAGTACTACTACTTATAC+AGG | + | chr7.3:3160187-3160206 | MS.gene072455:intron | 40.0% |
| !! | TGCTGCATTTCTGTCACTTT+CGG | + | chr7.3:3161795-3161814 | MS.gene072455:intron | 40.0% |
| !!! | TATTTTGGGAGCATTCCTGT+GGG | + | chr7.3:3160612-3160631 | MS.gene072455:intron | 40.0% |
| AAGATACGAGGTCTTTGGCT+AGG | - | chr7.3:3160847-3160866 | None:intergenic | 45.0% | |
| AAGGGAAGTTACCAAGAGAG+CGG | + | chr7.3:3160578-3160597 | MS.gene072455:intron | 45.0% | |
| AATTACCTCGTCGTTACCGT+TGG | - | chr7.3:3159672-3159691 | None:intergenic | 45.0% | |
| ACCCTCTTAATCAAGGGTTG+TGG | - | chr7.3:3160439-3160458 | None:intergenic | 45.0% | |
| AGATACGAGGTCTTTGGCTA+GGG | - | chr7.3:3160846-3160865 | None:intergenic | 45.0% | |
| AGGAAGGGTAGTATGTGATG+TGG | + | chr7.3:3160252-3160271 | MS.gene072455:intron | 45.0% | |
| AGGGAATGATACCATCCCAA+AGG | - | chr7.3:3161875-3161894 | None:intergenic | 45.0% | |
| ATCTGTATTCCCTGGGCAAT+CGG | - | chr7.3:3162145-3162164 | None:intergenic | 45.0% | |
| ATTACCTCGTCGTTACCGTT+GGG | - | chr7.3:3159671-3159690 | None:intergenic | 45.0% | |
| CACAGTTATACTGCTTGGGA+AGG | - | chr7.3:3160762-3160781 | None:intergenic | 45.0% | |
| CTAAGGCCAGTTCTATTCAC+CGG | + | chr7.3:3160706-3160725 | MS.gene072455:intron | 45.0% | |
| CTTCCATAGTGCTCAAGGAA+GGG | + | chr7.3:3160237-3160256 | MS.gene072455:intron | 45.0% | |
| CTTCCCAAGCAGTATAACTG+TGG | + | chr7.3:3160760-3160779 | MS.gene072455:intron | 45.0% | |
| CTTCCTTGAGCACTATGGAA+GGG | - | chr7.3:3160238-3160257 | None:intergenic | 45.0% | |
| GAAAGAGAAGAGAAGAGACC+TGG | - | chr7.3:3159543-3159562 | None:intergenic | 45.0% | |
| GACCACAACCCTTGATTAAG+AGG | + | chr7.3:3160434-3160453 | MS.gene072455:intron | 45.0% | |
| GCGAAAGAAGCAGGTTACAA+GGG | + | chr7.3:3160468-3160487 | MS.gene072455:intron | 45.0% | |
| GCTCCACAGTTATACTGCTT+GGG | - | chr7.3:3160766-3160785 | None:intergenic | 45.0% | |
| GGACAAAAGTTGGGGAAGAA+AGG | + | chr7.3:3161472-3161491 | MS.gene072455:intron | 45.0% | |
| GGGAATGATACCATCCCAAA+GGG | - | chr7.3:3161874-3161893 | None:intergenic | 45.0% | |
| GTTCACGTGGAACACAAAAC+AGG | + | chr7.3:3161400-3161419 | MS.gene072455:CDS | 45.0% | |
| TAAAAGGAGAGATTGGGGGA+AGG | - | chr7.3:3160886-3160905 | None:intergenic | 45.0% | |
| TGTGAACCGGTGAATAGAAC+TGG | - | chr7.3:3160715-3160734 | None:intergenic | 45.0% | |
| ! | GAAGGAGTGTAAATCCCCAA+TGG | + | chr7.3:3159996-3160015 | MS.gene072455:intron | 45.0% |
| ! | GCGGATGGTACCTTGTATTT+TGG | + | chr7.3:3160597-3160616 | MS.gene072455:intron | 45.0% |
| !! | TGGGTTGGTCATTGTTGAGA+TGG | + | chr7.3:3161704-3161723 | MS.gene072455:intron | 45.0% |
| !!! | GTATTTTGGGAGCATTCCTG+TGG | + | chr7.3:3160611-3160630 | MS.gene072455:intron | 45.0% |
| !! | AAAATAAAAATTAACAAAAA+AGG | - | chr7.3:3159603-3159622 | None:intergenic | 5.0% |
| !! | AAATAAAAATTAACAAAAAA+GGG | - | chr7.3:3159602-3159621 | None:intergenic | 5.0% |
| ACTCCCTTCCATAGTGCTCA+AGG | + | chr7.3:3160232-3160251 | MS.gene072455:intron | 50.0% | |
| AGAAAGGGATCCAAACGAGC+TGG | - | chr7.3:3161238-3161257 | None:intergenic | 50.0% | |
| AGGGTTGTGGTCTATCGCAT+TGG | - | chr7.3:3160426-3160445 | None:intergenic | 50.0% | |
| ATCTCCTTCTGCTCAAGTCC+AGG | + | chr7.3:3159522-3159541 | MS.gene072455:CDS | 50.0% | |
| CCTTCCATAGTGCTCAAGGA+AGG | + | chr7.3:3160236-3160255 | MS.gene072455:intron | 50.0% | |
| CCTTCCTTGAGCACTATGGA+AGG | - | chr7.3:3160239-3160258 | None:intergenic | 50.0% | |
| CTACCCTTCCTTGAGCACTA+TGG | - | chr7.3:3160243-3160262 | None:intergenic | 50.0% | |
| GAAGTTACCAAGAGAGCGGA+TGG | + | chr7.3:3160582-3160601 | MS.gene072455:intron | 50.0% | |
| GAGTGAGAGTCTCCAACAGA+AGG | - | chr7.3:3160357-3160376 | None:intergenic | 50.0% | |
| GCATTCCTGTGGGTAAAGTC+TGG | + | chr7.3:3160622-3160641 | MS.gene072455:intron | 50.0% | |
| GGCGAAAGAAGCAGGTTACA+AGG | + | chr7.3:3160467-3160486 | MS.gene072455:intron | 50.0% | |
| GGCTCCACAGTTATACTGCT+TGG | - | chr7.3:3160767-3160786 | None:intergenic | 50.0% | |
| GTACAGGGAACCAATTTGCG+TGG | + | chr7.3:3162035-3162054 | MS.gene072455:intron | 50.0% | |
| TGGACTTGAGCAGAAGGAGA+TGG | - | chr7.3:3159523-3159542 | None:intergenic | 50.0% | |
| TGGCATAACATGCCAGTGCA+AGG | - | chr7.3:3162078-3162097 | None:intergenic | 50.0% | |
| ACAACCCAACGGTAACGACG+AGG | + | chr7.3:3159664-3159683 | MS.gene072455:CDS | 55.0% | |
| CAGAGCCAGACTTTACCCAC+AGG | - | chr7.3:3160630-3160649 | None:intergenic | 55.0% | |
| GAGACCTGGACTTGAGCAGA+AGG | - | chr7.3:3159529-3159548 | None:intergenic | 55.0% | |
| TACGAGGTCTTTGGCTAGGG+AGG | - | chr7.3:3160843-3160862 | None:intergenic | 55.0% | |
| ! | CAAGGTACCATCCGCTCTCT+TGG | - | chr7.3:3160592-3160611 | None:intergenic | 55.0% |
| CTGCTTGGGAAGGAGAAGCG+AGG | - | chr7.3:3160752-3160771 | None:intergenic | 60.0% | |
| TCCCTGGGCAATCGGTAACC+TGG | - | chr7.3:3162137-3162156 | None:intergenic | 60.0% | |
| ! | GCCAGGTTACCGATTGCCCA+GGG | + | chr7.3:3162133-3162152 | MS.gene072455:CDS | 60.0% |
| ! | TGCCAGGTTACCGATTGCCC+AGG | + | chr7.3:3162132-3162151 | MS.gene072455:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 3159418 | 3162166 | 3159418 | ID=MS.gene072455 |
| chr7.3 | mRNA | 3159418 | 3162166 | 3159418 | ID=MS.gene072455.t1;Parent=MS.gene072455 |
| chr7.3 | exon | 3159418 | 3159543 | 3159418 | ID=MS.gene072455.t1.exon1;Parent=MS.gene072455.t1 |
| chr7.3 | CDS | 3159418 | 3159543 | 3159418 | ID=cds.MS.gene072455.t1;Parent=MS.gene072455.t1 |
| chr7.3 | exon | 3159638 | 3159685 | 3159638 | ID=MS.gene072455.t1.exon2;Parent=MS.gene072455.t1 |
| chr7.3 | CDS | 3159638 | 3159685 | 3159638 | ID=cds.MS.gene072455.t1;Parent=MS.gene072455.t1 |
| chr7.3 | exon | 3161359 | 3161421 | 3161359 | ID=MS.gene072455.t1.exon3;Parent=MS.gene072455.t1 |
| chr7.3 | CDS | 3161359 | 3161421 | 3161359 | ID=cds.MS.gene072455.t1;Parent=MS.gene072455.t1 |
| chr7.3 | exon | 3161533 | 3161586 | 3161533 | ID=MS.gene072455.t1.exon4;Parent=MS.gene072455.t1 |
| chr7.3 | CDS | 3161533 | 3161586 | 3161533 | ID=cds.MS.gene072455.t1;Parent=MS.gene072455.t1 |
| chr7.3 | exon | 3161867 | 3161953 | 3161867 | ID=MS.gene072455.t1.exon5;Parent=MS.gene072455.t1 |
| chr7.3 | CDS | 3161867 | 3161953 | 3161867 | ID=cds.MS.gene072455.t1;Parent=MS.gene072455.t1 |
| chr7.3 | exon | 3162041 | 3162166 | 3162041 | ID=MS.gene072455.t1.exon6;Parent=MS.gene072455.t1 |
| chr7.3 | CDS | 3162041 | 3162166 | 3162041 | ID=cds.MS.gene072455.t1;Parent=MS.gene072455.t1 |
| Gene Sequence |
| Protein sequence |
