Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67564.t1 | XP_003626310.1 | 98.2 | 167 | 3 | 0 | 1 | 167 | 1 | 167 | 1.30E-89 | 339 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67564.t1 | Q53YF3 | 78.4 | 167 | 36 | 0 | 1 | 167 | 1 | 167 | 2.6e-75 | 282.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67564.t1 | Q2HTM7 | 98.2 | 167 | 3 | 0 | 1 | 167 | 1 | 167 | 9.2e-90 | 339.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050320 | MS.gene67564 | 0.800256 | 1.57E-48 | -1.69E-46 |
| MS.gene051756 | MS.gene67564 | 0.813373 | 2.65E-51 | -1.69E-46 |
| MS.gene051903 | MS.gene67564 | 0.818328 | 2.08E-52 | -1.69E-46 |
| MS.gene056896 | MS.gene67564 | 0.813375 | 2.64E-51 | -1.69E-46 |
| MS.gene057094 | MS.gene67564 | 0.811824 | 5.77E-51 | -1.69E-46 |
| MS.gene058906 | MS.gene67564 | 0.801094 | 1.06E-48 | -1.69E-46 |
| MS.gene06001 | MS.gene67564 | 0.820559 | 6.44E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene67564 | MS.gene46806 | PPI |
| MS.gene67564 | MS.gene072455 | PPI |
| MS.gene29323 | MS.gene67564 | PPI |
| MS.gene67564 | MS.gene29323 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67564.t1 | MTR_7g113740 | 98.204 | 167 | 3 | 0 | 1 | 167 | 1 | 167 | 1.20e-123 | 345 |
| MS.gene67564.t1 | MTR_3g027890 | 82.036 | 167 | 30 | 0 | 1 | 167 | 1 | 167 | 5.37e-108 | 305 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67564.t1 | AT5G27430 | 78.443 | 167 | 36 | 0 | 1 | 167 | 1 | 167 | 1.39e-101 | 289 |
| MS.gene67564.t1 | AT3G05230 | 75.449 | 167 | 41 | 0 | 1 | 167 | 1 | 167 | 5.73e-98 | 280 |
| MS.gene67564.t1 | AT3G05230 | 73.810 | 126 | 33 | 0 | 1 | 126 | 1 | 126 | 2.50e-69 | 206 |
Find 36 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTGATTCAAGGGTTTCTT+TGG | 0.249498 | 7.3:+3213118 | None:intergenic |
| AAATTCTCTACCACGCAAAT+TGG | 0.318602 | 7.3:+3212639 | None:intergenic |
| AGCATGACACTTAATATTTC+AGG | 0.320278 | 7.3:-3213322 | MS.gene67564:CDS |
| AAACTTTGCATGCTCTTTAG+AGG | 0.327720 | 7.3:+3212792 | None:intergenic |
| TGTAGGTGTTGAATATTAAT+TGG | 0.336117 | 7.3:-3215063 | MS.gene67564:intron |
| TAAATACCGTTTCATTGATC+AGG | 0.381152 | 7.3:-3212752 | MS.gene67564:intron |
| AGAAGGAGATGGAGAATTGA+AGG | 0.420356 | 7.3:+3215193 | None:intergenic |
| ACCAAAGAAACCCTTGAATC+AGG | 0.421703 | 7.3:-3213119 | MS.gene67564:intron |
| ATCTGTATTCCCTGGGCAAT+CGG | 0.431457 | 7.3:+3212542 | None:intergenic |
| ATCTCCTTCTGCTCAAGTCC+AGG | 0.434481 | 7.3:-3215180 | MS.gene67564:intron |
| AATTACCTCGTCGTTACCGT+TGG | 0.465299 | 7.3:+3215027 | None:intergenic |
| ATTACCTCGTCGTTACCGTT+GGG | 0.472005 | 7.3:+3215028 | None:intergenic |
| GTTCACGTGGAACACAAAAC+AGG | 0.477621 | 7.3:-3213284 | MS.gene67564:intron |
| AAGGCATCATCTGTATTCCC+TGG | 0.485485 | 7.3:+3212534 | None:intergenic |
| CATACATCATACCTGATTCA+AGG | 0.490102 | 7.3:+3213108 | None:intergenic |
| TCCCTGGGCAATCGGTAACC+TGG | 0.493808 | 7.3:+3212550 | None:intergenic |
| AACTTTGCATGCTCTTTAGA+GGG | 0.517084 | 7.3:+3212793 | None:intergenic |
| ACTCCGAGAATGCATTCATT+CGG | 0.527592 | 7.3:-3215293 | None:intergenic |
| TGCCAGGTTACCGATTGCCC+AGG | 0.539181 | 7.3:-3212552 | MS.gene67564:CDS |
| GGGAATGATACCATCCCAAA+GGG | 0.544276 | 7.3:+3212813 | None:intergenic |
| AATTTAACTTGACCTTGCAC+TGG | 0.545173 | 7.3:-3212621 | MS.gene67564:CDS |
| TATATACCTGATCAATGAAA+CGG | 0.547986 | 7.3:+3212746 | None:intergenic |
| GCTGATAAAATAGTAATGCC+AGG | 0.552824 | 7.3:-3212568 | MS.gene67564:CDS |
| TGGACTTGAGCAGAAGGAGA+TGG | 0.553502 | 7.3:+3215182 | None:intergenic |
| AGAAAATGTTAGCAAAGCGT+TGG | 0.554899 | 7.3:+3215262 | None:intergenic |
| GAGACCTGGACTTGAGCAGA+AGG | 0.562774 | 7.3:+3215176 | None:intergenic |
| TGGCATAACATGCCAGTGCA+AGG | 0.570110 | 7.3:+3212609 | None:intergenic |
| ATACATCATACCTGATTCAA+GGG | 0.573602 | 7.3:+3213109 | None:intergenic |
| TTACAGATATCCCTTTGGGA+TGG | 0.587335 | 7.3:-3212823 | MS.gene67564:intron |
| AGGCATCATCTGTATTCCCT+GGG | 0.600588 | 7.3:+3212535 | None:intergenic |
| GCCAGGTTACCGATTGCCCA+GGG | 0.602814 | 7.3:-3212551 | MS.gene67564:CDS |
| AGGGAATGATACCATCCCAA+AGG | 0.633639 | 7.3:+3212812 | None:intergenic |
| ATTTACAGTCTCTGTTCACG+TGG | 0.665261 | 7.3:-3213297 | MS.gene67564:CDS |
| GTACAGGGAACCAATTTGCG+TGG | 0.675868 | 7.3:-3212649 | MS.gene67564:intron |
| ACAACCCAACGGTAACGACG+AGG | 0.716822 | 7.3:-3215032 | MS.gene67564:intron |
| TGGTTTCAGAAACAACCCAA+CGG | 0.718343 | 7.3:-3215043 | MS.gene67564:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATACTGTTTTTTTTTTTTT+TGG | + | chr7.3:3213929-3213948 | None:intergenic | 10.0% |
| !!! | TTATTTTTATTTTTATGTGT+AGG | - | chr7.3:3212744-3212763 | MS.gene67564:intron | 10.0% |
| !!! | GTTTTTTGCAAATAAATAAA+AGG | + | chr7.3:3214042-3214061 | None:intergenic | 15.0% |
| !!! | TTCAAACTTTTTTTTTTGAA+AGG | - | chr7.3:3214427-3214446 | MS.gene67564:intron | 15.0% |
| !! | AAATAAAAAAGGCAAAGTTA+AGG | + | chr7.3:3215153-3215172 | None:intergenic | 20.0% |
| !! | AAATAAATAAAAGGAGAGAT+TGG | + | chr7.3:3214033-3214052 | None:intergenic | 20.0% |
| !! | AATAAAGACAAAAAACTAAG+AGG | + | chr7.3:3214589-3214608 | None:intergenic | 20.0% |
| !! | AATAAATAAAAGGAGAGATT+GGG | + | chr7.3:3214032-3214051 | None:intergenic | 20.0% |
| !! | ATATGATACTCATAATAATG+TGG | + | chr7.3:3214338-3214357 | None:intergenic | 20.0% |
| !! | TTACTTTATCCTTATGTTTA+TGG | - | chr7.3:3212944-3212963 | MS.gene67564:intron | 20.0% |
| !!! | TAGTTTTTTGTCTTTATTTC+AGG | - | chr7.3:3214591-3214610 | MS.gene67564:intron | 20.0% |
| !!! | TTTAATCGCTTGTTATAAAA+AGG | + | chr7.3:3214806-3214825 | None:intergenic | 20.0% |
| ! | AACAGTATAATTGTAGAACT+TGG | - | chr7.3:3213940-3213959 | MS.gene67564:intron | 25.0% |
| ! | ACACAATTACCATAAACATA+AGG | + | chr7.3:3212956-3212975 | None:intergenic | 25.0% |
| ! | ATAAATAAAAGGAGAGATTG+GGG | + | chr7.3:3214031-3214050 | None:intergenic | 25.0% |
| ! | ATCAGGTATATAACTCTTAT+AGG | - | chr7.3:3215089-3215108 | MS.gene67564:intron | 25.0% |
| ! | CACAATCAGTTGAAAAAATA+AGG | + | chr7.3:3213539-3213558 | None:intergenic | 25.0% |
| ! | CCTAAATATAAGAGAAAGTT+GGG | + | chr7.3:3213311-3213330 | None:intergenic | 25.0% |
| ! | CCTATATATAAGAGAAAGTT+GGG | - | chr7.3:3213226-3213245 | MS.gene67564:intron | 25.0% |
| ! | GATTACTTATATAGGGTATA+GGG | - | chr7.3:3213339-3213358 | MS.gene67564:intron | 25.0% |
| ! | TATATACCTGATCAATGAAA+CGG | + | chr7.3:3215081-3215100 | None:intergenic | 25.0% |
| ! | TCCTAAATATAAGAGAAAGT+TGG | + | chr7.3:3213312-3213331 | None:intergenic | 25.0% |
| ! | TCCTATATATAAGAGAAAGT+TGG | - | chr7.3:3213225-3213244 | MS.gene67564:intron | 25.0% |
| ! | TTTATTTCAGGACAAAAGTT+GGG | - | chr7.3:3214603-3214622 | MS.gene67564:intron | 25.0% |
| !! | ATGTGATTTTGAATTACTGA+AGG | - | chr7.3:3213131-3213150 | MS.gene67564:CDS | 25.0% |
| !!! | CTACATACTTTTTTCAAAGA+TGG | - | chr7.3:3214277-3214296 | MS.gene67564:intron | 25.0% |
| !!! | TAATTGTGTCATTTAAGTTG+TGG | - | chr7.3:3212967-3212986 | MS.gene67564:intron | 25.0% |
| !!! | TATTGGTTCAAAATTTGGAT+CGG | + | chr7.3:3213272-3213291 | None:intergenic | 25.0% |
| !!! | TGATGTATTGGTTCAAAATT+TGG | + | chr7.3:3213277-3213296 | None:intergenic | 25.0% |
| !!! | TGTAGGTGTTGAATATTAAT+TGG | - | chr7.3:3212761-3212780 | MS.gene67564:CDS | 25.0% |
| !!! | TTAGAAAGTGGGTTATATAA+GGG | - | chr7.3:3213701-3213720 | MS.gene67564:intron | 25.0% |
| AAAGAAAGACATGGTAATAG+TGG | - | chr7.3:3214824-3214843 | MS.gene67564:intron | 30.0% | |
| AAATCATAGCTGGAAATTGT+TGG | - | chr7.3:3214233-3214252 | MS.gene67564:intron | 30.0% | |
| AACATAAACCCTCTTAATCA+AGG | + | chr7.3:3213587-3213606 | None:intergenic | 30.0% | |
| AAGAAAGACATGGTAATAGT+GGG | - | chr7.3:3214825-3214844 | MS.gene67564:intron | 30.0% | |
| AAGCGATTAAAAGAAAGACA+TGG | - | chr7.3:3214815-3214834 | MS.gene67564:intron | 30.0% | |
| AATTGTTGGAAACATCATGT+TGG | - | chr7.3:3214247-3214266 | MS.gene67564:intron | 30.0% | |
| ACATAAACCCTCTTAATCAA+GGG | + | chr7.3:3213586-3213605 | None:intergenic | 30.0% | |
| ACTATCTTCCTTACTAACTA+AGG | - | chr7.3:3214073-3214092 | MS.gene67564:intron | 30.0% | |
| AGATTGTTACGAAAGATGTT+AGG | - | chr7.3:3213657-3213676 | MS.gene67564:intron | 30.0% | |
| AGCATGACACTTAATATTTC+AGG | - | chr7.3:3214502-3214521 | MS.gene67564:intron | 30.0% | |
| AGGAAGATAGTGAAGAAATA+AGG | + | chr7.3:3214064-3214083 | None:intergenic | 30.0% | |
| AGTATAATTGTAGAACTTGG+AGG | - | chr7.3:3213943-3213962 | MS.gene67564:intron | 30.0% | |
| ATACATCATACCTGATTCAA+GGG | + | chr7.3:3214718-3214737 | None:intergenic | 30.0% | |
| ATTCGTTGTTCAAACTGAAA+TGG | - | chr7.3:3214456-3214475 | MS.gene67564:intron | 30.0% | |
| ATTTACATACAACAGACAAG+AGG | - | chr7.3:3214184-3214203 | MS.gene67564:intron | 30.0% | |
| CAGTTGAAAAGTTAGAAAGT+GGG | - | chr7.3:3213690-3213709 | MS.gene67564:intron | 30.0% | |
| CCCAACTTTCTCTTATATAT+AGG | + | chr7.3:3213229-3213248 | None:intergenic | 30.0% | |
| CCCAACTTTCTCTTATATTT+AGG | - | chr7.3:3213308-3213327 | MS.gene67564:CDS | 30.0% | |
| CCTTACATATACTGTAACAT+GGG | + | chr7.3:3213038-3213057 | None:intergenic | 30.0% | |
| CTATAGTTATAAACTCCATC+CGG | - | chr7.3:3213202-3213221 | MS.gene67564:intron | 30.0% | |
| CTTTCTCTTATATATAGGAC+CGG | + | chr7.3:3213224-3213243 | None:intergenic | 30.0% | |
| GAATTACCTCAGATTTCTTT+AGG | - | chr7.3:3215127-3215146 | MS.gene67564:intron | 30.0% | |
| GACATTGAATATCAGAGAAA+GGG | + | chr7.3:3214393-3214412 | None:intergenic | 30.0% | |
| GATACTCATAATAATGTGGT+AGG | + | chr7.3:3214334-3214353 | None:intergenic | 30.0% | |
| GATTGTTACGAAAGATGTTA+GGG | - | chr7.3:3213658-3213677 | MS.gene67564:intron | 30.0% | |
| GGATTACTTATATAGGGTAT+AGG | - | chr7.3:3213338-3213357 | MS.gene67564:intron | 30.0% | |
| GGTATATGACTTCACATATA+AGG | + | chr7.3:3213477-3213496 | None:intergenic | 30.0% | |
| GTATAATTGTAGAACTTGGA+GGG | - | chr7.3:3213944-3213963 | MS.gene67564:intron | 30.0% | |
| TAAATAAAAGGAGAGATTGG+GGG | + | chr7.3:3214030-3214049 | None:intergenic | 30.0% | |
| TAAATACCGTTTCATTGATC+AGG | - | chr7.3:3215072-3215091 | MS.gene67564:intron | 30.0% | |
| TAACATCTTTCGTAACAATC+TGG | + | chr7.3:3213658-3213677 | None:intergenic | 30.0% | |
| TACATCGAATCTTTCAGATT+TGG | + | chr7.3:3214134-3214153 | None:intergenic | 30.0% | |
| TCAGTTGAAAAGTTAGAAAG+TGG | - | chr7.3:3213689-3213708 | MS.gene67564:intron | 30.0% | |
| TCCCTGTACACAAATAAAAA+AGG | + | chr7.3:3215164-3215183 | None:intergenic | 30.0% | |
| TCCTTACATATACTGTAACA+TGG | + | chr7.3:3213039-3213058 | None:intergenic | 30.0% | |
| TGACATTGAATATCAGAGAA+AGG | + | chr7.3:3214394-3214413 | None:intergenic | 30.0% | |
| TGATTAAGAGGGTTTATGTT+AGG | - | chr7.3:3213587-3213606 | MS.gene67564:intron | 30.0% | |
| TTATTTCAGGACAAAAGTTG+GGG | - | chr7.3:3214604-3214623 | MS.gene67564:intron | 30.0% | |
| TTGGGTCAACAAAAGTTAAT+GGG | - | chr7.3:3213244-3213263 | MS.gene67564:intron | 30.0% | |
| ! | ATTGGTTCAAAATTTGGATC+GGG | + | chr7.3:3213271-3213290 | None:intergenic | 30.0% |
| ! | CATTTTACAGATATCCCTTT+GGG | - | chr7.3:3214997-3215016 | MS.gene67564:intron | 30.0% |
| ! | CTTTATTTCAGGACAAAAGT+TGG | - | chr7.3:3214602-3214621 | MS.gene67564:intron | 30.0% |
| ! | CTTTCTCTTATATTTAGGAC+TGG | - | chr7.3:3213313-3213332 | MS.gene67564:CDS | 30.0% |
| ! | GCAATTCTTTCTGTTTTCTA+AGG | - | chr7.3:3213830-3213849 | MS.gene67564:intron | 30.0% |
| ! | GGAAGAAAGGAAACTAATTT+TGG | - | chr7.3:3214625-3214644 | MS.gene67564:intron | 30.0% |
| ! | TTGCTTCATAAGACTCTTTT+TGG | + | chr7.3:3213423-3213442 | None:intergenic | 30.0% |
| !! | GTTAGAAAGTGGGTTATATA+AGG | - | chr7.3:3213700-3213719 | MS.gene67564:intron | 30.0% |
| !!! | GCCTTTTTTATTTGTGTACA+GGG | - | chr7.3:3215160-3215179 | MS.gene67564:intron | 30.0% |
| !!! | TGCCTTTTTTATTTGTGTAC+AGG | - | chr7.3:3215159-3215178 | MS.gene67564:intron | 30.0% |
| AAACAGGTCAAAATCATAGC+TGG | - | chr7.3:3214223-3214242 | MS.gene67564:intron | 35.0% | |
| AAACTTTGCATGCTCTTTAG+AGG | + | chr7.3:3215035-3215054 | None:intergenic | 35.0% | |
| AAATTCTCTACCACGCAAAT+TGG | + | chr7.3:3215188-3215207 | None:intergenic | 35.0% | |
| AACTTTGCATGCTCTTTAGA+GGG | + | chr7.3:3215034-3215053 | None:intergenic | 35.0% | |
| AAGGAACAGAACACAGTTTA+TGG | - | chr7.3:3213054-3213073 | MS.gene67564:intron | 35.0% | |
| ACTCATAATAATGTGGTAGG+CGG | + | chr7.3:3214331-3214350 | None:intergenic | 35.0% | |
| ACTGGAGGGATTACTTATAT+AGG | - | chr7.3:3213331-3213350 | MS.gene67564:intron | 35.0% | |
| AGAAAATGTTAGCAAAGCGT+TGG | + | chr7.3:3212565-3212584 | None:intergenic | 35.0% | |
| AGTTGGCAAGCTTCAAATTT+AGG | + | chr7.3:3214783-3214802 | None:intergenic | 35.0% | |
| ATCAGGTATGATGTATGCTT+TGG | - | chr7.3:3214722-3214741 | MS.gene67564:intron | 35.0% | |
| ATCGAATCTTTCAGATTTGG+AGG | + | chr7.3:3214131-3214150 | None:intergenic | 35.0% | |
| ATGACTTCACATATAAGGCA+AGG | + | chr7.3:3213472-3213491 | None:intergenic | 35.0% | |
| ATTCGATGTAATTGCTTCAG+AGG | - | chr7.3:3214144-3214163 | MS.gene67564:intron | 35.0% | |
| CATACATCATACCTGATTCA+AGG | + | chr7.3:3214719-3214738 | None:intergenic | 35.0% | |
| CCAAAGGGATATCTGTAAAA+TGG | + | chr7.3:3214999-3215018 | None:intergenic | 35.0% | |
| CCCATGTTACAGTATATGTA+AGG | - | chr7.3:3213035-3213054 | MS.gene67564:intron | 35.0% | |
| CGAAAGAAGGACAAAAATCA+GGG | + | chr7.3:3212999-3213018 | None:intergenic | 35.0% | |
| CTGGAGGGATTACTTATATA+GGG | - | chr7.3:3213332-3213351 | MS.gene67564:intron | 35.0% | |
| GCCAAAAACTGGAAAAATGT+TGG | - | chr7.3:3215234-3215253 | MS.gene67564:CDS | 35.0% | |
| GCTGATAAAATAGTAATGCC+AGG | - | chr7.3:3215256-3215275 | MS.gene67564:CDS | 35.0% | |
| GTAGTTTGACGACTTCTAAT+AGG | + | chr7.3:3214109-3214128 | None:intergenic | 35.0% | |
| GTTGGGTCAACAAAAGTTAA+TGG | - | chr7.3:3213243-3213262 | MS.gene67564:intron | 35.0% | |
| TATAGGGTATAGGGTATGAA+AGG | - | chr7.3:3213348-3213367 | MS.gene67564:intron | 35.0% | |
| TCTTCCTAGACAATACCATT+GGG | + | chr7.3:3213167-3213186 | None:intergenic | 35.0% | |
| TCTTCCTTACTAACTAAGGA+AGG | - | chr7.3:3214077-3214096 | MS.gene67564:intron | 35.0% | |
| TGAAGTCATATACCTTCTGT+TGG | - | chr7.3:3213483-3213502 | MS.gene67564:intron | 35.0% | |
| TGACTTCACATATAAGGCAA+GGG | + | chr7.3:3213471-3213490 | None:intergenic | 35.0% | |
| TGCTGAATAAACAGTGTAGT+CGG | - | chr7.3:3213789-3213808 | MS.gene67564:intron | 35.0% | |
| TTAAGGCCTAAAGAAATCTG+AGG | + | chr7.3:3215136-3215155 | None:intergenic | 35.0% | |
| TTTGAAAGATACGAGGTCTT+TGG | + | chr7.3:3213992-3214011 | None:intergenic | 35.0% | |
| ! | ATATATCAAGCACTGTGAAC+CGG | + | chr7.3:3213869-3213888 | None:intergenic | 35.0% |
| ! | CCATTTTACAGATATCCCTT+TGG | - | chr7.3:3214996-3215015 | MS.gene67564:intron | 35.0% |
| ! | CCTGATTTTTGTCCTTCTTT+CGG | - | chr7.3:3212997-3213016 | MS.gene67564:intron | 35.0% |
| ! | CTCTTATATTTAGGACTGGA+GGG | - | chr7.3:3213317-3213336 | MS.gene67564:CDS | 35.0% |
| ! | CTTGTCATTTGAAAGATACG+AGG | + | chr7.3:3213999-3214018 | None:intergenic | 35.0% |
| ! | GCCAACATTTTTCCAGTTTT+TGG | + | chr7.3:3215238-3215257 | None:intergenic | 35.0% |
| ! | TCTCTTATATTTAGGACTGG+AGG | - | chr7.3:3213316-3213335 | MS.gene67564:CDS | 35.0% |
| ! | TGCTTCTTTTCTATGCTTTC+AGG | - | chr7.3:3214651-3214670 | MS.gene67564:intron | 35.0% |
| ! | TTTTCATTTACCAGCTCGTT+TGG | - | chr7.3:3214365-3214384 | MS.gene67564:intron | 35.0% |
| ! | TTTTGTCCTTCTTTCGGTTA+GGG | - | chr7.3:3213003-3213022 | MS.gene67564:intron | 35.0% |
| ! | TTTTTGTCCTTCTTTCGGTT+AGG | - | chr7.3:3213002-3213021 | MS.gene67564:intron | 35.0% |
| !! | AATTTAACTTGACCTTGCAC+TGG | - | chr7.3:3215203-3215222 | MS.gene67564:CDS | 35.0% |
| !! | CGCTTGTTATAAAAAGGAGT+TGG | + | chr7.3:3214800-3214819 | None:intergenic | 35.0% |
| !! | GGAAGCATTATTATTCTTGC+AGG | - | chr7.3:3214477-3214496 | MS.gene67564:intron | 35.0% |
| !! | GTCAACAAGAGTTGATGTAT+TGG | + | chr7.3:3213289-3213308 | None:intergenic | 35.0% |
| AATCCCCAATGGTATTGTCT+AGG | - | chr7.3:3213160-3213179 | MS.gene67564:intron | 40.0% | |
| ACCAAAGAAACCCTTGAATC+AGG | - | chr7.3:3214705-3214724 | MS.gene67564:intron | 40.0% | |
| ACCACAACCCTTGATTAAGA+GGG | - | chr7.3:3213576-3213595 | MS.gene67564:intron | 40.0% | |
| ACCTGATTCAAGGGTTTCTT+TGG | + | chr7.3:3214709-3214728 | None:intergenic | 40.0% | |
| AGAAGGAGATGGAGAATTGA+AGG | + | chr7.3:3212634-3212653 | None:intergenic | 40.0% | |
| AGGAATGCTCCCAAAATACA+AGG | + | chr7.3:3213751-3213770 | None:intergenic | 40.0% | |
| ATTTACAGTCTCTGTTCACG+TGG | - | chr7.3:3214527-3214546 | MS.gene67564:intron | 40.0% | |
| CCGAAAGAAGGACAAAAATC+AGG | + | chr7.3:3213000-3213019 | None:intergenic | 40.0% | |
| CTCTCCTTCCTTAGTTAGTA+AGG | + | chr7.3:3214084-3214103 | None:intergenic | 40.0% | |
| CTCTTATATATAGGACCGGA+TGG | + | chr7.3:3213220-3213239 | None:intergenic | 40.0% | |
| CTCTTCCTAGACAATACCAT+TGG | + | chr7.3:3213168-3213187 | None:intergenic | 40.0% | |
| CTTCCTAGACAATACCATTG+GGG | + | chr7.3:3213166-3213185 | None:intergenic | 40.0% | |
| TACTTGTGTGTGCATGAAAC+AGG | - | chr7.3:3214207-3214226 | MS.gene67564:intron | 40.0% | |
| TGGCATGTTATGCCAAAAAC+TGG | - | chr7.3:3215223-3215242 | MS.gene67564:CDS | 40.0% | |
| TGGTTTCAGAAACAACCCAA+CGG | - | chr7.3:3212781-3212800 | MS.gene67564:CDS | 40.0% | |
| TTATGTTAGGCGAAAGAAGC+AGG | - | chr7.3:3213600-3213619 | MS.gene67564:intron | 40.0% | |
| ! | CGGATGGTACCTTGTATTTT+GGG | - | chr7.3:3213739-3213758 | MS.gene67564:intron | 40.0% |
| ! | TTACAGATATCCCTTTGGGA+TGG | - | chr7.3:3215001-3215020 | MS.gene67564:intron | 40.0% |
| !! | AAGACATGGTAATAGTGGGT+TGG | - | chr7.3:3214829-3214848 | MS.gene67564:intron | 40.0% |
| !! | TGCTGCATTTCTGTCACTTT+CGG | - | chr7.3:3214935-3214954 | MS.gene67564:intron | 40.0% |
| !!! | TATTTTGGGAGCATTCCTGT+GGG | - | chr7.3:3213753-3213772 | MS.gene67564:intron | 40.0% |
| AAGATACGAGGTCTTTGGCT+AGG | + | chr7.3:3213987-3214006 | None:intergenic | 45.0% | |
| AAGGGAAGTTACCAAGAGAG+CGG | - | chr7.3:3213719-3213738 | MS.gene67564:intron | 45.0% | |
| AATTACCTCGTCGTTACCGT+TGG | + | chr7.3:3212800-3212819 | None:intergenic | 45.0% | |
| ACCCTCTTAATCAAGGGTTG+TGG | + | chr7.3:3213580-3213599 | None:intergenic | 45.0% | |
| AGATACGAGGTCTTTGGCTA+GGG | + | chr7.3:3213986-3214005 | None:intergenic | 45.0% | |
| AGGAAGGGTAGTATGTGATG+TGG | - | chr7.3:3213396-3213415 | MS.gene67564:intron | 45.0% | |
| AGGGAATGATACCATCCCAA+AGG | + | chr7.3:3215015-3215034 | None:intergenic | 45.0% | |
| ATCTGTATTCCCTGGGCAAT+CGG | + | chr7.3:3215285-3215304 | None:intergenic | 45.0% | |
| ATTACCTCGTCGTTACCGTT+GGG | + | chr7.3:3212799-3212818 | None:intergenic | 45.0% | |
| CACAGTTATACTGCTTGGGA+AGG | + | chr7.3:3213903-3213922 | None:intergenic | 45.0% | |
| CTAAGGCCAGTTCTATTCAC+CGG | - | chr7.3:3213847-3213866 | MS.gene67564:intron | 45.0% | |
| CTTCCCAAGCAGTATAACTG+TGG | - | chr7.3:3213901-3213920 | MS.gene67564:intron | 45.0% | |
| GAAAGAGAAGAGAAGAGACC+TGG | + | chr7.3:3212665-3212684 | None:intergenic | 45.0% | |
| GACCACAACCCTTGATTAAG+AGG | - | chr7.3:3213575-3213594 | MS.gene67564:intron | 45.0% | |
| GCGAAAGAAGCAGGTTACAA+GGG | - | chr7.3:3213609-3213628 | MS.gene67564:intron | 45.0% | |
| GCTCCACAGTTATACTGCTT+GGG | + | chr7.3:3213907-3213926 | None:intergenic | 45.0% | |
| GGACAAAAGTTGGGGAAGAA+AGG | - | chr7.3:3214612-3214631 | MS.gene67564:intron | 45.0% | |
| GGGAATGATACCATCCCAAA+GGG | + | chr7.3:3215014-3215033 | None:intergenic | 45.0% | |
| GTTCACGTGGAACACAAAAC+AGG | - | chr7.3:3214540-3214559 | MS.gene67564:intron | 45.0% | |
| TAAAAGGAGAGATTGGGGGA+AGG | + | chr7.3:3214026-3214045 | None:intergenic | 45.0% | |
| TACCCTTCCTTGAGCACTTT+GGG | + | chr7.3:3213386-3213405 | None:intergenic | 45.0% | |
| TCATCTCCCTAACCGAAAGA+AGG | + | chr7.3:3213012-3213031 | None:intergenic | 45.0% | |
| TGTGAACCGGTGAATAGAAC+TGG | + | chr7.3:3213856-3213875 | None:intergenic | 45.0% | |
| ! | GAAGGAGTGTAAATCCCCAA+TGG | - | chr7.3:3213149-3213168 | MS.gene67564:CDS | 45.0% |
| ! | GCGGATGGTACCTTGTATTT+TGG | - | chr7.3:3213738-3213757 | MS.gene67564:intron | 45.0% |
| !! | TGGGTTGGTCATTGTTGAGA+TGG | - | chr7.3:3214844-3214863 | MS.gene67564:intron | 45.0% |
| !!! | GTATTTTGGGAGCATTCCTG+TGG | - | chr7.3:3213752-3213771 | MS.gene67564:intron | 45.0% |
| !! | AAAATAAAAATTAACAAAAA+AGG | + | chr7.3:3212725-3212744 | None:intergenic | 5.0% |
| !! | AAATAAAAATTAACAAAAAA+GGG | + | chr7.3:3212724-3212743 | None:intergenic | 5.0% |
| AGAAAGGGATCCAAACGAGC+TGG | + | chr7.3:3214378-3214397 | None:intergenic | 50.0% | |
| AGGGTTGTGGTCTATCGCAT+TGG | + | chr7.3:3213567-3213586 | None:intergenic | 50.0% | |
| ATCTCCTTCTGCTCAAGTCC+AGG | - | chr7.3:3212644-3212663 | MS.gene67564:CDS | 50.0% | |
| CTACCCTTCCTTGAGCACTT+TGG | + | chr7.3:3213387-3213406 | None:intergenic | 50.0% | |
| GAAGTTACCAAGAGAGCGGA+TGG | - | chr7.3:3213723-3213742 | MS.gene67564:intron | 50.0% | |
| GAGTGAGAGTCTCCAACAGA+AGG | + | chr7.3:3213498-3213517 | None:intergenic | 50.0% | |
| GCATTCCTGTGGGTAAAGTC+TGG | - | chr7.3:3213763-3213782 | MS.gene67564:intron | 50.0% | |
| GGCGAAAGAAGCAGGTTACA+AGG | - | chr7.3:3213608-3213627 | MS.gene67564:intron | 50.0% | |
| GGCTCCACAGTTATACTGCT+TGG | + | chr7.3:3213908-3213927 | None:intergenic | 50.0% | |
| GTACAGGGAACCAATTTGCG+TGG | - | chr7.3:3215175-3215194 | MS.gene67564:intron | 50.0% | |
| TGGACTTGAGCAGAAGGAGA+TGG | + | chr7.3:3212645-3212664 | None:intergenic | 50.0% | |
| TGGCATAACATGCCAGTGCA+AGG | + | chr7.3:3215218-3215237 | None:intergenic | 50.0% | |
| ! | CTCCCAAAGTGCTCAAGGAA+GGG | - | chr7.3:3213381-3213400 | MS.gene67564:intron | 50.0% |
| ! | CTTCCTTGAGCACTTTGGGA+GGG | + | chr7.3:3213382-3213401 | None:intergenic | 50.0% |
| ACAACCCAACGGTAACGACG+AGG | - | chr7.3:3212792-3212811 | MS.gene67564:CDS | 55.0% | |
| CAGAGCCAGACTTTACCCAC+AGG | + | chr7.3:3213771-3213790 | None:intergenic | 55.0% | |
| CCTTCCTTGAGCACTTTGGG+AGG | + | chr7.3:3213383-3213402 | None:intergenic | 55.0% | |
| GAGACCTGGACTTGAGCAGA+AGG | + | chr7.3:3212651-3212670 | None:intergenic | 55.0% | |
| TACGAGGTCTTTGGCTAGGG+AGG | + | chr7.3:3213983-3214002 | None:intergenic | 55.0% | |
| ! | ACTCCCTCCCAAAGTGCTCA+AGG | - | chr7.3:3213376-3213395 | MS.gene67564:intron | 55.0% |
| ! | CAAGGTACCATCCGCTCTCT+TGG | + | chr7.3:3213733-3213752 | None:intergenic | 55.0% |
| ! | CCTCCCAAAGTGCTCAAGGA+AGG | - | chr7.3:3213380-3213399 | MS.gene67564:intron | 55.0% |
| CTGCTTGGGAAGGAGAAGCG+AGG | + | chr7.3:3213893-3213912 | None:intergenic | 60.0% | |
| TCCCTGGGCAATCGGTAACC+TGG | + | chr7.3:3215277-3215296 | None:intergenic | 60.0% | |
| ! | GCCAGGTTACCGATTGCCCA+GGG | - | chr7.3:3215273-3215292 | MS.gene67564:CDS | 60.0% |
| ! | TGCCAGGTTACCGATTGCCC+AGG | - | chr7.3:3215272-3215291 | MS.gene67564:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 3212540 | 3215306 | 3212540 | ID=MS.gene67564 |
| chr7.3 | mRNA | 3212540 | 3215306 | 3212540 | ID=MS.gene67564.t1;Parent=MS.gene67564 |
| chr7.3 | exon | 3215181 | 3215306 | 3215181 | ID=MS.gene67564.t1.exon1;Parent=MS.gene67564.t1 |
| chr7.3 | CDS | 3215181 | 3215306 | 3215181 | ID=cds.MS.gene67564.t1;Parent=MS.gene67564.t1 |
| chr7.3 | exon | 3215033 | 3215080 | 3215033 | ID=MS.gene67564.t1.exon2;Parent=MS.gene67564.t1 |
| chr7.3 | CDS | 3215033 | 3215080 | 3215033 | ID=cds.MS.gene67564.t1;Parent=MS.gene67564.t1 |
| chr7.3 | exon | 3213285 | 3213347 | 3213285 | ID=MS.gene67564.t1.exon3;Parent=MS.gene67564.t1 |
| chr7.3 | CDS | 3213285 | 3213347 | 3213285 | ID=cds.MS.gene67564.t1;Parent=MS.gene67564.t1 |
| chr7.3 | exon | 3213120 | 3213173 | 3213120 | ID=MS.gene67564.t1.exon4;Parent=MS.gene67564.t1 |
| chr7.3 | CDS | 3213120 | 3213173 | 3213120 | ID=cds.MS.gene67564.t1;Parent=MS.gene67564.t1 |
| chr7.3 | exon | 3212753 | 3212839 | 3212753 | ID=MS.gene67564.t1.exon5;Parent=MS.gene67564.t1 |
| chr7.3 | CDS | 3212753 | 3212839 | 3212753 | ID=cds.MS.gene67564.t1;Parent=MS.gene67564.t1 |
| chr7.3 | exon | 3212540 | 3212665 | 3212540 | ID=MS.gene67564.t1.exon6;Parent=MS.gene67564.t1 |
| chr7.3 | CDS | 3212540 | 3212665 | 3212540 | ID=cds.MS.gene67564.t1;Parent=MS.gene67564.t1 |
| Gene Sequence |
| Protein sequence |
