Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29367.t1 | XP_003601249.1 | 96.6 | 352 | 12 | 0 | 1 | 352 | 1 | 352 | 2.10E-198 | 701.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29367.t1 | G7J5E4 | 96.6 | 352 | 12 | 0 | 1 | 352 | 1 | 352 | 1.5e-198 | 701.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene80715 | MS.gene29367 | PPI |
| MS.gene027656 | MS.gene29367 | PPI |
| MS.gene44353 | MS.gene29367 | PPI |
| MS.gene29367 | MS.gene53464 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29367.t1 | MTR_3g077630 | 96.591 | 352 | 12 | 0 | 1 | 352 | 1 | 352 | 0.0 | 702 |
| MS.gene29367.t1 | MTR_4g105600 | 68.362 | 354 | 106 | 4 | 1 | 352 | 1 | 350 | 4.42e-180 | 503 |
| MS.gene29367.t1 | MTR_8g069820 | 49.575 | 353 | 169 | 4 | 1 | 352 | 1 | 345 | 1.89e-123 | 359 |
| MS.gene29367.t1 | MTR_5g033940 | 50.742 | 337 | 157 | 2 | 16 | 352 | 1 | 328 | 2.08e-118 | 345 |
| MS.gene29367.t1 | MTR_7g035095 | 50.602 | 332 | 143 | 5 | 19 | 350 | 8 | 318 | 5.10e-114 | 334 |
| MS.gene29367.t1 | MTR_8g069805 | 47.042 | 355 | 163 | 5 | 8 | 352 | 21 | 360 | 5.09e-113 | 333 |
| MS.gene29367.t1 | MTR_1g086330 | 39.286 | 336 | 175 | 5 | 27 | 348 | 5 | 325 | 1.45e-76 | 239 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29367.t1 | AT5G62960 | 54.728 | 349 | 134 | 5 | 9 | 352 | 18 | 347 | 4.22e-136 | 391 |
| MS.gene29367.t1 | AT1G70505 | 51.734 | 346 | 160 | 4 | 2 | 347 | 13 | 351 | 2.53e-122 | 356 |
| MS.gene29367.t1 | AT5G62960 | 54.662 | 311 | 117 | 5 | 9 | 314 | 18 | 309 | 1.71e-118 | 345 |
| MS.gene29367.t1 | AT1G70505 | 51.807 | 332 | 153 | 4 | 16 | 347 | 1 | 325 | 5.71e-116 | 339 |
| MS.gene29367.t1 | AT1G10660 | 49.240 | 329 | 156 | 3 | 16 | 344 | 1 | 318 | 6.49e-110 | 323 |
| MS.gene29367.t1 | AT1G10660 | 49.240 | 329 | 156 | 3 | 16 | 344 | 1 | 318 | 6.49e-110 | 323 |
| MS.gene29367.t1 | AT1G10660 | 49.240 | 329 | 156 | 3 | 16 | 344 | 1 | 318 | 6.49e-110 | 323 |
| MS.gene29367.t1 | AT1G10660 | 49.240 | 329 | 156 | 3 | 16 | 344 | 1 | 318 | 6.49e-110 | 323 |
| MS.gene29367.t1 | AT3G27770 | 45.283 | 318 | 159 | 4 | 24 | 341 | 13 | 315 | 2.47e-91 | 276 |
| MS.gene29367.t1 | AT1G70505 | 47.388 | 268 | 134 | 4 | 2 | 269 | 13 | 273 | 5.53e-78 | 243 |
| MS.gene29367.t1 | AT3G27770 | 45.136 | 257 | 134 | 2 | 85 | 341 | 23 | 272 | 5.51e-73 | 228 |
| MS.gene29367.t1 | AT1G70505 | 47.222 | 252 | 126 | 4 | 16 | 267 | 1 | 245 | 1.30e-72 | 226 |
| MS.gene29367.t1 | AT2G47115 | 36.533 | 323 | 173 | 4 | 27 | 347 | 5 | 297 | 3.17e-60 | 196 |
Find 67 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAGAGTTATTGGATTAAT+TGG | 0.135883 | 3.2:-68612206 | MS.gene29367:CDS |
| TACTCACTGATTGTGTATTT+TGG | 0.182995 | 3.2:-68610867 | MS.gene29367:CDS |
| ACCTGGAGGCCTTGTTTAAA+AGG | 0.225203 | 3.2:-68612027 | MS.gene29367:CDS |
| AGACAAATACACAGAGTTAT+TGG | 0.237042 | 3.2:-68612215 | MS.gene29367:CDS |
| AATTCACCCTGCCTGGCTTT+TGG | 0.246613 | 3.2:-68612004 | MS.gene29367:CDS |
| TATACTTACCCCAAAGTAAA+AGG | 0.252087 | 3.2:+68611387 | None:intergenic |
| GAAATCAAGTGGTGATAATA+AGG | 0.310675 | 3.2:-68611212 | MS.gene29367:CDS |
| TTTCGCGTTTATTGTGCTTT+TGG | 0.313165 | 3.2:-68611971 | MS.gene29367:CDS |
| GTTTAGATTGTAATCTTTGA+TGG | 0.322863 | 3.2:+68610822 | None:intergenic |
| ATTGTCAATGTTGTTGTTGA+TGG | 0.329364 | 3.2:-68611940 | MS.gene29367:CDS |
| ATTTGTCTTAACAGTCATAA+TGG | 0.332466 | 3.2:+68612230 | None:intergenic |
| ATGGGTTCCCATGAGCCTTT+AGG | 0.343227 | 3.2:+68612249 | None:intergenic |
| TTTGTCTTAACAGTCATAAT+GGG | 0.380779 | 3.2:+68612231 | None:intergenic |
| TCGCCAACATGCTGGAACTT+GGG | 0.386612 | 3.2:-68611074 | MS.gene29367:CDS |
| TTCGCCAACATGCTGGAACT+TGG | 0.393037 | 3.2:-68611075 | MS.gene29367:CDS |
| TAATCTTTGATGGTTAGAAA+TGG | 0.396997 | 3.2:+68610832 | None:intergenic |
| GCCTTTCCCTTGGTTTCGAA+TGG | 0.405870 | 3.2:-68610523 | MS.gene29367:CDS |
| TTCATGCTTGCATTAATCTC+TGG | 0.416369 | 3.2:-68610452 | MS.gene29367:intron |
| TGATACAGCTTTAAATTGTC+TGG | 0.419901 | 3.2:-68610636 | MS.gene29367:intron |
| CGAAAAGCCAAAAGCCAGGC+AGG | 0.426327 | 3.2:+68611997 | None:intergenic |
| GAGGATGACAAGTCAAGAAA+TGG | 0.433463 | 3.2:+68610323 | None:intergenic |
| GCTCTCTTCAGCCTTTCCCT+TGG | 0.434934 | 3.2:-68610533 | MS.gene29367:intron |
| TAAAAGGAATTCACCCTGCC+TGG | 0.437629 | 3.2:-68612011 | MS.gene29367:CDS |
| CACTTGATTTCTTATGATGT+TGG | 0.439825 | 3.2:+68611224 | None:intergenic |
| TTGGCGAACAATAACTTCTT+CGG | 0.458839 | 3.2:+68611090 | None:intergenic |
| GTCTCAACAAGAAATGTTAG+TGG | 0.460047 | 3.2:-68612096 | MS.gene29367:CDS |
| CCTTTCCCTTGGTTTCGAAT+GGG | 0.468182 | 3.2:-68610522 | MS.gene29367:CDS |
| TTGATATGAGTCGGGGTAGC+GGG | 0.468763 | 3.2:+68609997 | None:intergenic |
| CTAACACATTGATATGAGTC+GGG | 0.484149 | 3.2:+68609989 | None:intergenic |
| TTTCTAACAGGCTCTCCTAA+AGG | 0.487904 | 3.2:-68612264 | MS.gene29367:CDS |
| TCTGATGCATTAGAACTTTG+TGG | 0.494592 | 3.2:+68611136 | None:intergenic |
| GTTATTGTTCGCCAACATGC+TGG | 0.506700 | 3.2:-68611082 | MS.gene29367:CDS |
| CAGGCTCTCCTAAAGGCTCA+TGG | 0.510113 | 3.2:-68612257 | MS.gene29367:CDS |
| AGAGTTATTGGATTAATTGG+AGG | 0.510956 | 3.2:-68612203 | MS.gene29367:CDS |
| GACAAGTCAAGAAATGGATA+AGG | 0.518669 | 3.2:+68610329 | None:intergenic |
| CGCCAACATGCTGGAACTTG+GGG | 0.519334 | 3.2:-68611073 | MS.gene29367:CDS |
| TGCAAGCATGAACAATCCAT+TGG | 0.520315 | 3.2:+68610463 | None:intergenic |
| GATTTCTAGGTACTTTGCTG+TGG | 0.521399 | 3.2:-68610089 | MS.gene29367:intron |
| AACCCGAAAAGCCAAAAGCC+AGG | 0.523042 | 3.2:+68611993 | None:intergenic |
| ATACCAGAGTGGAGCATATG+AGG | 0.527124 | 3.2:+68610304 | None:intergenic |
| CTGATGCATTAGAACTTTGT+GGG | 0.528959 | 3.2:+68611137 | None:intergenic |
| ACTTGTGAATAGATAAATGC+AGG | 0.536058 | 3.2:-68610898 | MS.gene29367:intron |
| GTCAATGTTGTTGTTGATGG+AGG | 0.537253 | 3.2:-68611937 | MS.gene29367:CDS |
| GAGTTATTGGATTAATTGGA+GGG | 0.537811 | 3.2:-68612202 | MS.gene29367:CDS |
| TTAAAGCTGTATCACCTATG+AGG | 0.539460 | 3.2:+68610645 | None:intergenic |
| TCTAACACATTGATATGAGT+CGG | 0.542148 | 3.2:+68609988 | None:intergenic |
| TTACTGCACATTCCATGCTA+TGG | 0.562491 | 3.2:-68610064 | MS.gene29367:CDS |
| TGATAATAAGGTTGATAATG+TGG | 0.562805 | 3.2:-68611200 | MS.gene29367:CDS |
| CCCATTCGAAACCAAGGGAA+AGG | 0.571956 | 3.2:+68610522 | None:intergenic |
| GGATCAATACTGTCCATGCA+TGG | 0.577489 | 3.2:-68611253 | MS.gene29367:CDS |
| AGGCTCTCCTAAAGGCTCAT+GGG | 0.579776 | 3.2:-68612256 | MS.gene29367:CDS |
| ATTGATATGAGTCGGGGTAG+CGG | 0.581054 | 3.2:+68609996 | None:intergenic |
| AATAAGGTTGATAATGTGGA+TGG | 0.581138 | 3.2:-68611196 | MS.gene29367:CDS |
| AAAGTGAAAATACCATAGCA+TGG | 0.583624 | 3.2:+68610052 | None:intergenic |
| AAGTATCCCATTCGAAACCA+AGG | 0.584984 | 3.2:+68610516 | None:intergenic |
| CAACATCATAAGAAATCAAG+TGG | 0.586505 | 3.2:-68611223 | MS.gene29367:CDS |
| AACCCCAAGTTCCAGCATGT+TGG | 0.588542 | 3.2:+68611071 | None:intergenic |
| CATCCTCATATGCTCCACTC+TGG | 0.593145 | 3.2:-68610307 | MS.gene29367:intron |
| TAGTGGAAGAGAAAGAGAAG+CGG | 0.595008 | 3.2:-68612079 | MS.gene29367:CDS |
| GAAAAGCCAAAAGCCAGGCA+GGG | 0.595715 | 3.2:+68611998 | None:intergenic |
| AGTATCCCATTCGAAACCAA+GGG | 0.618643 | 3.2:+68610517 | None:intergenic |
| GTGGATGGAGATGCAGAGCA+AGG | 0.625282 | 3.2:-68611181 | MS.gene29367:CDS |
| GCGAACAATAACTTCTTCGG+AGG | 0.642088 | 3.2:+68611093 | None:intergenic |
| TAACACATTGATATGAGTCG+GGG | 0.681170 | 3.2:+68609990 | None:intergenic |
| ATGTTGGTAACATCCATGCA+TGG | 0.683290 | 3.2:+68611240 | None:intergenic |
| GAGTAAAGTTCATACCAGAG+TGG | 0.715233 | 3.2:+68610293 | None:intergenic |
| TGTACGAGGATGAAACCTGG+AGG | 0.758950 | 3.2:-68612041 | MS.gene29367:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGCAATTAATAATATTTT+AGG | - | chr3.2:68610490-68610509 | MS.gene29367:CDS | 10.0% |
| !!! | TTTGATTTTGATTTTTTTTA+TGG | - | chr3.2:68610812-68610831 | MS.gene29367:intron | 10.0% |
| !! | AAAATAGTTTATTACTTCAT+AGG | + | chr3.2:68612073-68612092 | None:intergenic | 15.0% |
| !! | AATACTATAATCAATATAAG+TGG | + | chr3.2:68611543-68611562 | None:intergenic | 15.0% |
| !! | GTATATATAGCATTATAATT+TGG | - | chr3.2:68610440-68610459 | MS.gene29367:intron | 15.0% |
| !!! | TAATAAACTATTTTAGAACT+CGG | - | chr3.2:68612079-68612098 | MS.gene29367:CDS | 15.0% |
| !!! | TATTTTTCAAATAATATTCC+AGG | - | chr3.2:68611208-68611227 | MS.gene29367:CDS | 15.0% |
| !!! | TTTTGTTTTGTTTTAAGATT+TGG | - | chr3.2:68610383-68610402 | MS.gene29367:intron | 15.0% |
| !! | AGAGATTATATAGTATATGA+TGG | + | chr3.2:68610943-68610962 | None:intergenic | 20.0% |
| !! | GAACAAAAACTAAAAAACAA+AGG | + | chr3.2:68611835-68611854 | None:intergenic | 20.0% |
| !! | TTATAATGCTATATATACAG+AGG | + | chr3.2:68610438-68610457 | None:intergenic | 20.0% |
| !!! | AATAAACTATTTTAGAACTC+GGG | - | chr3.2:68612080-68612099 | MS.gene29367:CDS | 20.0% |
| !!! | TTGATTATAGTATTCTTTTG+TGG | - | chr3.2:68611549-68611568 | MS.gene29367:intron | 20.0% |
| !!! | TTTTAAGATTTGGTATCTTT+TGG | - | chr3.2:68610393-68610412 | MS.gene29367:intron | 20.0% |
| ! | AAAATTGAAAAAACTGTACC+TGG | + | chr3.2:68611229-68611248 | None:intergenic | 25.0% |
| ! | AAATAAGAGACTTCAAAACT+TGG | - | chr3.2:68611509-68611528 | MS.gene29367:intron | 25.0% |
| ! | AAATATTGTCTGGCTATAAA+TGG | + | chr3.2:68610727-68610746 | None:intergenic | 25.0% |
| ! | AAGGCAATAACTTTCTTAAA+AGG | + | chr3.2:68610673-68610692 | None:intergenic | 25.0% |
| ! | ATTTGTCTTAACAGTCATAA+TGG | + | chr3.2:68610028-68610047 | None:intergenic | 25.0% |
| ! | GTTTAGATTGTAATCTTTGA+TGG | + | chr3.2:68611436-68611455 | None:intergenic | 25.0% |
| ! | TCTATGAACTCATTCATTTA+GGG | - | chr3.2:68611469-68611488 | MS.gene29367:intron | 25.0% |
| ! | TGTATGTACTTAAGTTCATT+TGG | - | chr3.2:68612116-68612135 | MS.gene29367:CDS | 25.0% |
| ! | TTCTATGAACTCATTCATTT+AGG | - | chr3.2:68611468-68611487 | MS.gene29367:intron | 25.0% |
| ! | TTTGTCTTAACAGTCATAAT+GGG | + | chr3.2:68610027-68610046 | None:intergenic | 25.0% |
| !! | AAATTCAGATATTTTGTACG+AGG | - | chr3.2:68610200-68610219 | MS.gene29367:intron | 25.0% |
| !! | TAATCTTTGATGGTTAGAAA+TGG | + | chr3.2:68611426-68611445 | None:intergenic | 25.0% |
| !! | TACTGATTAAACTTCAATGA+TGG | - | chr3.2:68611256-68611275 | MS.gene29367:CDS | 25.0% |
| !!! | AAAACTCTAGAACTAAAGAA+TGG | + | chr3.2:68612036-68612055 | None:intergenic | 25.0% |
| !!! | TGATAATAAGGTTGATAATG+TGG | - | chr3.2:68611055-68611074 | MS.gene29367:CDS | 25.0% |
| !!! | TTTTTATGGTTTCTGAAACA+AGG | - | chr3.2:68610826-68610845 | MS.gene29367:CDS | 25.0% |
| AAAGTGAAAATACCATAGCA+TGG | + | chr3.2:68612206-68612225 | None:intergenic | 30.0% | |
| AAGTCAATTATACAATCCAC+TGG | + | chr3.2:68611327-68611346 | None:intergenic | 30.0% | |
| ACTTGTGAATAGATAAATGC+AGG | - | chr3.2:68611357-68611376 | MS.gene29367:intron | 30.0% | |
| AGACAAATACACAGAGTTAT+TGG | - | chr3.2:68610040-68610059 | MS.gene29367:CDS | 30.0% | |
| AGAGTTATTGGATTAATTGG+AGG | - | chr3.2:68610052-68610071 | MS.gene29367:CDS | 30.0% | |
| ATCAGACCAAGAGAAAAATT+TGG | - | chr3.2:68611136-68611155 | MS.gene29367:CDS | 30.0% | |
| CAACATCATAAGAAATCAAG+TGG | - | chr3.2:68611032-68611051 | MS.gene29367:intron | 30.0% | |
| CACAGAGTTATTGGATTAAT+TGG | - | chr3.2:68610049-68610068 | MS.gene29367:CDS | 30.0% | |
| CACTTGATTTCTTATGATGT+TGG | + | chr3.2:68611034-68611053 | None:intergenic | 30.0% | |
| CTATGAACTCATTCATTTAG+GGG | - | chr3.2:68611470-68611489 | MS.gene29367:intron | 30.0% | |
| GAAATCAAGTGGTGATAATA+AGG | - | chr3.2:68611043-68611062 | MS.gene29367:intron | 30.0% | |
| GAGTTATTGGATTAATTGGA+GGG | - | chr3.2:68610053-68610072 | MS.gene29367:CDS | 30.0% | |
| GCTGCAATATCAATCATAAA+AGG | + | chr3.2:68610980-68610999 | None:intergenic | 30.0% | |
| TATACTTACCCCAAAGTAAA+AGG | + | chr3.2:68610871-68610890 | None:intergenic | 30.0% | |
| TATGAACTCATTCATTTAGG+GGG | - | chr3.2:68611471-68611490 | MS.gene29367:intron | 30.0% | |
| TCAGACCAAGAGAAAAATTT+GGG | - | chr3.2:68611137-68611156 | MS.gene29367:CDS | 30.0% | |
| TCTAACACATTGATATGAGT+CGG | + | chr3.2:68612270-68612289 | None:intergenic | 30.0% | |
| TTATGATTGATATTGCAGCT+AGG | - | chr3.2:68610981-68611000 | MS.gene29367:intron | 30.0% | |
| TTCCACTGTTTGTGTTTATA+TGG | - | chr3.2:68611677-68611696 | MS.gene29367:intron | 30.0% | |
| TTCCATATAAACACAAACAG+TGG | + | chr3.2:68611682-68611701 | None:intergenic | 30.0% | |
| TTGGAAGAACATTATGAATG+AGG | - | chr3.2:68610412-68610431 | MS.gene29367:intron | 30.0% | |
| ! | ATGCTATGGTATTTTCACTT+TGG | - | chr3.2:68612205-68612224 | MS.gene29367:CDS | 30.0% |
| ! | ATTGTCAATGTTGTTGTTGA+TGG | - | chr3.2:68610315-68610334 | MS.gene29367:CDS | 30.0% |
| ! | CTTCAATCACCTTTTACTTT+GGG | - | chr3.2:68610859-68610878 | MS.gene29367:CDS | 30.0% |
| ! | TGACATATGTGATTTTCCAA+TGG | - | chr3.2:68611776-68611795 | MS.gene29367:intron | 30.0% |
| ! | TGCTATGGTATTTTCACTTT+GGG | - | chr3.2:68612206-68612225 | MS.gene29367:CDS | 30.0% |
| ! | TTCAATCACCTTTTACTTTG+GGG | - | chr3.2:68610860-68610879 | MS.gene29367:CDS | 30.0% |
| ! | TTTTCTCATCATTGCTTCTA+TGG | - | chr3.2:68610112-68610131 | MS.gene29367:intron | 30.0% |
| !! | AATAAGGTTGATAATGTGGA+TGG | - | chr3.2:68611059-68611078 | MS.gene29367:CDS | 30.0% |
| !! | TACTCACTGATTGTGTATTT+TGG | - | chr3.2:68611388-68611407 | MS.gene29367:intron | 30.0% |
| !! | TGATACAGCTTTAAATTGTC+TGG | - | chr3.2:68611619-68611638 | MS.gene29367:intron | 30.0% |
| !! | TTACTTTGGGGTAAGTATAA+AGG | - | chr3.2:68610872-68610891 | MS.gene29367:CDS | 30.0% |
| !!! | ATCAATGCTATTTTCCTCAT+AGG | - | chr3.2:68611596-68611615 | MS.gene29367:intron | 30.0% |
| !!! | GTCTTCTTGTTTTGAAAAAC+AGG | - | chr3.2:68611900-68611919 | MS.gene29367:intron | 30.0% |
| !!! | TTCTTGTTTTGAAAAACAGG+TGG | - | chr3.2:68611903-68611922 | MS.gene29367:intron | 30.0% |
| AATCACAAGCCATAGAAAAC+AGG | + | chr3.2:68612146-68612165 | None:intergenic | 35.0% | |
| CTAACACATTGATATGAGTC+GGG | + | chr3.2:68612269-68612288 | None:intergenic | 35.0% | |
| CTGATGCATTAGAACTTTGT+GGG | + | chr3.2:68611121-68611140 | None:intergenic | 35.0% | |
| CTTAACTACAAAAGCAGAGA+GGG | + | chr3.2:68610592-68610611 | None:intergenic | 35.0% | |
| GACAAGTCAAGAAATGGATA+AGG | + | chr3.2:68611929-68611948 | None:intergenic | 35.0% | |
| GCAAGAGTTGAAATATTGTC+TGG | + | chr3.2:68610737-68610756 | None:intergenic | 35.0% | |
| GTCTCAACAAGAAATGTTAG+TGG | - | chr3.2:68610159-68610178 | MS.gene29367:intron | 35.0% | |
| TAACACATTGATATGAGTCG+GGG | + | chr3.2:68612268-68612287 | None:intergenic | 35.0% | |
| TCTGATGCATTAGAACTTTG+TGG | + | chr3.2:68611122-68611141 | None:intergenic | 35.0% | |
| TTAAAGCTGTATCACCTATG+AGG | + | chr3.2:68611613-68611632 | None:intergenic | 35.0% | |
| TTAGCTTCATGAATGATGCA+AGG | + | chr3.2:68610692-68610711 | None:intergenic | 35.0% | |
| TTCATGCTTGCATTAATCTC+TGG | - | chr3.2:68611803-68611822 | MS.gene29367:intron | 35.0% | |
| TTGGCGAACAATAACTTCTT+CGG | + | chr3.2:68611168-68611187 | None:intergenic | 35.0% | |
| TTTGCAGAAGATGATGAGAA+TGG | + | chr3.2:68611987-68612006 | None:intergenic | 35.0% | |
| ! | ATGGCTTGTGATTGATTTCT+AGG | - | chr3.2:68612153-68612172 | MS.gene29367:CDS | 35.0% |
| ! | GAATGGGATACTTTTGCTTA+TGG | - | chr3.2:68611749-68611768 | MS.gene29367:intron | 35.0% |
| ! | GCTTCAATCACCTTTTACTT+TGG | - | chr3.2:68610858-68610877 | MS.gene29367:CDS | 35.0% |
| ! | GGGTGAATTCCTTTTAAACA+AGG | + | chr3.2:68610240-68610259 | None:intergenic | 35.0% |
| ! | TAGTATTCTTTTGTGGCAGT+TGG | - | chr3.2:68611556-68611575 | MS.gene29367:intron | 35.0% |
| ! | TTTCGCGTTTATTGTGCTTT+TGG | - | chr3.2:68610284-68610303 | MS.gene29367:intron | 35.0% |
| !! | TTATGGTTTCTGAAACAAGG+TGG | - | chr3.2:68610829-68610848 | MS.gene29367:CDS | 35.0% |
| !! | TTTGGTGATCCTGTTTTCTA+TGG | - | chr3.2:68612134-68612153 | MS.gene29367:CDS | 35.0% |
| !!! | GGTTTTGCTTTGTGCTATTT+GGG | - | chr3.2:68610074-68610093 | MS.gene29367:CDS | 35.0% |
| AAGTATCCCATTCGAAACCA+AGG | + | chr3.2:68611742-68611761 | None:intergenic | 40.0% | |
| AGTATCCCATTCGAAACCAA+GGG | + | chr3.2:68611741-68611760 | None:intergenic | 40.0% | |
| CAAATGTTAGCTCAAACCAG+TGG | - | chr3.2:68611308-68611327 | MS.gene29367:intron | 40.0% | |
| CCTTAACTACAAAAGCAGAG+AGG | + | chr3.2:68610593-68610612 | None:intergenic | 40.0% | |
| GAGGATGACAAGTCAAGAAA+TGG | + | chr3.2:68611935-68611954 | None:intergenic | 40.0% | |
| GAGTAAAGTTCATACCAGAG+TGG | + | chr3.2:68611965-68611984 | None:intergenic | 40.0% | |
| TAATGTACCTTGCTAGCTGA+AGG | - | chr3.2:68610539-68610558 | MS.gene29367:intron | 40.0% | |
| TAGTGGAAGAGAAAGAGAAG+CGG | - | chr3.2:68610176-68610195 | MS.gene29367:intron | 40.0% | |
| TCATTTAGGGGGTTTCTCTT+AGG | - | chr3.2:68611482-68611501 | MS.gene29367:intron | 40.0% | |
| TGCAAGCATGAACAATCCAT+TGG | + | chr3.2:68611795-68611814 | None:intergenic | 40.0% | |
| TTACTGCACATTCCATGCTA+TGG | - | chr3.2:68612191-68612210 | MS.gene29367:CDS | 40.0% | |
| TTTCTAACAGGCTCTCCTAA+AGG | - | chr3.2:68609991-68610010 | MS.gene29367:CDS | 40.0% | |
| ! | AGGCTCCCAAATTTTTCTCT+TGG | + | chr3.2:68611145-68611164 | None:intergenic | 40.0% |
| ! | GATTTCTAGGTACTTTGCTG+TGG | - | chr3.2:68612166-68612185 | MS.gene29367:CDS | 40.0% |
| ! | GTCAATGTTGTTGTTGATGG+AGG | - | chr3.2:68610318-68610337 | MS.gene29367:CDS | 40.0% |
| ! | TTTTGTACGAGGATGAAACC+TGG | - | chr3.2:68610211-68610230 | MS.gene29367:intron | 40.0% |
| !! | ATGTTGGTAACATCCATGCA+TGG | + | chr3.2:68611018-68611037 | None:intergenic | 40.0% |
| !! | CCTCTCTGCTTTTGTAGTTA+AGG | - | chr3.2:68610590-68610609 | MS.gene29367:intron | 40.0% |
| !! | GGGTTTTGCTTTGTGCTATT+TGG | - | chr3.2:68610073-68610092 | MS.gene29367:CDS | 40.0% |
| ATACCAGAGTGGAGCATATG+AGG | + | chr3.2:68611954-68611973 | None:intergenic | 45.0% | |
| ATGTGTTCCTTCAGCTAGCA+AGG | + | chr3.2:68610549-68610568 | None:intergenic | 45.0% | |
| ATTGATATGAGTCGGGGTAG+CGG | + | chr3.2:68612262-68612281 | None:intergenic | 45.0% | |
| CCTTTCCCTTGGTTTCGAAT+GGG | - | chr3.2:68611733-68611752 | MS.gene29367:intron | 45.0% | |
| GAAAGGCTGAAGAGAGCAAA+AGG | + | chr3.2:68611719-68611738 | None:intergenic | 45.0% | |
| GCGAACAATAACTTCTTCGG+AGG | + | chr3.2:68611165-68611184 | None:intergenic | 45.0% | |
| GGATCAATACTGTCCATGCA+TGG | - | chr3.2:68611002-68611021 | MS.gene29367:intron | 45.0% | |
| GTTATTGTTCGCCAACATGC+TGG | - | chr3.2:68611173-68611192 | MS.gene29367:CDS | 45.0% | |
| TAAAAGGAATTCACCCTGCC+TGG | - | chr3.2:68610244-68610263 | MS.gene29367:intron | 45.0% | |
| ! | TCCTTTTAAACAAGGCCTCC+AGG | + | chr3.2:68610232-68610251 | None:intergenic | 45.0% |
| !! | ACCTGGAGGCCTTGTTTAAA+AGG | - | chr3.2:68610228-68610247 | MS.gene29367:intron | 45.0% |
| AACCCCAAGTTCCAGCATGT+TGG | + | chr3.2:68611187-68611206 | None:intergenic | 50.0% | |
| AACCCGAAAAGCCAAAAGCC+AGG | + | chr3.2:68610265-68610284 | None:intergenic | 50.0% | |
| AGGCTCTCCTAAAGGCTCAT+GGG | - | chr3.2:68609999-68610018 | MS.gene29367:CDS | 50.0% | |
| ATGGGTTCCCATGAGCCTTT+AGG | + | chr3.2:68610009-68610028 | None:intergenic | 50.0% | |
| CATCCTCATATGCTCCACTC+TGG | - | chr3.2:68611948-68611967 | MS.gene29367:CDS | 50.0% | |
| CCCATTCGAAACCAAGGGAA+AGG | + | chr3.2:68611736-68611755 | None:intergenic | 50.0% | |
| GAAAAGCCAAAAGCCAGGCA+GGG | + | chr3.2:68610260-68610279 | None:intergenic | 50.0% | |
| GCCTTTCCCTTGGTTTCGAA+TGG | - | chr3.2:68611732-68611751 | MS.gene29367:intron | 50.0% | |
| TCGCCAACATGCTGGAACTT+GGG | - | chr3.2:68611181-68611200 | MS.gene29367:CDS | 50.0% | |
| TGTACGAGGATGAAACCTGG+AGG | - | chr3.2:68610214-68610233 | MS.gene29367:intron | 50.0% | |
| TTCGCCAACATGCTGGAACT+TGG | - | chr3.2:68611180-68611199 | MS.gene29367:CDS | 50.0% | |
| TTGATATGAGTCGGGGTAGC+GGG | + | chr3.2:68612261-68612280 | None:intergenic | 50.0% | |
| !! | AATTCACCCTGCCTGGCTTT+TGG | - | chr3.2:68610251-68610270 | MS.gene29367:intron | 50.0% |
| !!! | CTGCCTGGCTTTTGGCTTTT+CGG | - | chr3.2:68610259-68610278 | MS.gene29367:intron | 50.0% |
| !!! | TGCCTGGCTTTTGGCTTTTC+GGG | - | chr3.2:68610260-68610279 | MS.gene29367:intron | 50.0% |
| CAGGCTCTCCTAAAGGCTCA+TGG | - | chr3.2:68609998-68610017 | MS.gene29367:CDS | 55.0% | |
| CGAAAAGCCAAAAGCCAGGC+AGG | + | chr3.2:68610261-68610280 | None:intergenic | 55.0% | |
| CGCCAACATGCTGGAACTTG+GGG | - | chr3.2:68611182-68611201 | MS.gene29367:CDS | 55.0% | |
| GCTCTCTTCAGCCTTTCCCT+TGG | - | chr3.2:68611722-68611741 | MS.gene29367:intron | 55.0% | |
| GTGGATGGAGATGCAGAGCA+AGG | - | chr3.2:68611074-68611093 | MS.gene29367:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 68609985 | 68612292 | 68609985 | ID=MS.gene29367 |
| chr3.2 | mRNA | 68609985 | 68612292 | 68609985 | ID=MS.gene29367.t1;Parent=MS.gene29367 |
| chr3.2 | exon | 68611913 | 68612292 | 68611913 | ID=MS.gene29367.t1.exon1;Parent=MS.gene29367.t1 |
| chr3.2 | CDS | 68611913 | 68612292 | 68611913 | ID=cds.MS.gene29367.t1;Parent=MS.gene29367.t1 |
| chr3.2 | exon | 68611396 | 68611429 | 68611396 | ID=MS.gene29367.t1.exon2;Parent=MS.gene29367.t1 |
| chr3.2 | CDS | 68611396 | 68611429 | 68611396 | ID=cds.MS.gene29367.t1;Parent=MS.gene29367.t1 |
| chr3.2 | exon | 68611048 | 68611278 | 68611048 | ID=MS.gene29367.t1.exon3;Parent=MS.gene29367.t1 |
| chr3.2 | CDS | 68611048 | 68611278 | 68611048 | ID=cds.MS.gene29367.t1;Parent=MS.gene29367.t1 |
| chr3.2 | exon | 68610819 | 68610908 | 68610819 | ID=MS.gene29367.t1.exon4;Parent=MS.gene29367.t1 |
| chr3.2 | CDS | 68610819 | 68610908 | 68610819 | ID=cds.MS.gene29367.t1;Parent=MS.gene29367.t1 |
| chr3.2 | exon | 68610637 | 68610702 | 68610637 | ID=MS.gene29367.t1.exon5;Parent=MS.gene29367.t1 |
| chr3.2 | CDS | 68610637 | 68610702 | 68610637 | ID=cds.MS.gene29367.t1;Parent=MS.gene29367.t1 |
| chr3.2 | exon | 68610453 | 68610544 | 68610453 | ID=MS.gene29367.t1.exon6;Parent=MS.gene29367.t1 |
| chr3.2 | CDS | 68610453 | 68610544 | 68610453 | ID=cds.MS.gene29367.t1;Parent=MS.gene29367.t1 |
| chr3.2 | exon | 68610308 | 68610355 | 68610308 | ID=MS.gene29367.t1.exon7;Parent=MS.gene29367.t1 |
| chr3.2 | CDS | 68610308 | 68610355 | 68610308 | ID=cds.MS.gene29367.t1;Parent=MS.gene29367.t1 |
| chr3.2 | exon | 68609985 | 68610102 | 68609985 | ID=MS.gene29367.t1.exon8;Parent=MS.gene29367.t1 |
| chr3.2 | CDS | 68609985 | 68610102 | 68609985 | ID=cds.MS.gene29367.t1;Parent=MS.gene29367.t1 |
| Gene Sequence |
| Protein sequence |
