Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29533.t1 | XP_003616495.1 | 97.4 | 235 | 6 | 0 | 1 | 235 | 39 | 273 | 8.60E-124 | 453 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29533.t1 | Q54TS4 | 34.8 | 198 | 119 | 3 | 39 | 231 | 125 | 317 | 1.7e-24 | 114.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29533.t1 | G7K200 | 97.4 | 235 | 6 | 0 | 1 | 235 | 39 | 273 | 6.2e-124 | 453.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene29533 | MS.gene050864 | PPI |
| MS.gene29533 | MS.gene29330 | PPI |
| MS.gene072464 | MS.gene29533 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29533.t1 | MTR_5g081040 | 97.447 | 235 | 6 | 0 | 1 | 235 | 39 | 273 | 8.73e-169 | 466 |
| MS.gene29533.t1 | MTR_5g081040 | 98.095 | 210 | 4 | 0 | 26 | 235 | 4 | 213 | 1.44e-148 | 412 |
| MS.gene29533.t1 | MTR_3g069150 | 77.872 | 235 | 50 | 2 | 1 | 234 | 39 | 272 | 2.25e-128 | 364 |
| MS.gene29533.t1 | MTR_3g069170 | 77.723 | 202 | 44 | 1 | 1 | 201 | 39 | 240 | 2.09e-111 | 320 |
| MS.gene29533.t1 | MTR_3g069150 | 77.457 | 173 | 38 | 1 | 1 | 172 | 39 | 211 | 1.79e-94 | 277 |
| MS.gene29533.t1 | MTR_7g113620 | 38.140 | 215 | 124 | 3 | 1 | 208 | 38 | 250 | 1.73e-48 | 161 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29533.t1 | AT2G39805 | 65.106 | 235 | 78 | 3 | 1 | 234 | 43 | 274 | 5.17e-109 | 315 |
| MS.gene29533.t1 | AT2G39805 | 64.831 | 236 | 78 | 4 | 1 | 234 | 43 | 275 | 2.96e-107 | 310 |
| MS.gene29533.t1 | AT5G27490 | 37.037 | 243 | 142 | 4 | 1 | 234 | 38 | 278 | 1.12e-51 | 169 |
| MS.gene29533.t1 | AT3G05280 | 37.118 | 229 | 132 | 4 | 1 | 220 | 37 | 262 | 2.44e-46 | 155 |
Find 63 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGTAAGACCTCAAGTTTA+AGG | 0.239012 | 5.3:+65139219 | None:intergenic |
| ATGCTAACCTTATAAGGTTT+TGG | 0.250616 | 5.3:-65139605 | MS.gene29533:CDS |
| GTTCAAATGCTAACCTTATA+AGG | 0.256753 | 5.3:-65139611 | MS.gene29533:CDS |
| ACATGCACCAAAACCTTATA+AGG | 0.322668 | 5.3:+65139598 | None:intergenic |
| ATTGTAGATACGGGCTTATA+TGG | 0.331360 | 5.3:-65139821 | MS.gene29533:intron |
| TACTGAAGAGATGATGAAAA+TGG | 0.347950 | 5.3:+65139560 | None:intergenic |
| AGAAACAGAACGCACAAATC+AGG | 0.357941 | 5.3:+65140147 | None:intergenic |
| GTCTTTGTACTTGCCTCGCT+TGG | 0.388742 | 5.3:-65139783 | MS.gene29533:CDS |
| ACGGCTGCATGGTCTATCTA+TGG | 0.398905 | 5.3:-65139684 | MS.gene29533:CDS |
| CTACTTCTTCCTTCAGTACA+TGG | 0.404025 | 5.3:-65139634 | MS.gene29533:CDS |
| AACAACAGCCAACAAACAAT+TGG | 0.404317 | 5.3:-65140296 | MS.gene29533:CDS |
| TGGCAGTCTTCATCAAGGTT+TGG | 0.405808 | 5.3:-65139141 | MS.gene29533:CDS |
| CTGAAGAAGTCTCCACCAAC+TGG | 0.422517 | 5.3:+65140186 | None:intergenic |
| TGATGTTAGCTATATGAATA+CGG | 0.435253 | 5.3:-65139703 | MS.gene29533:CDS |
| TCTGTCTCCTCCGTTGGTGG+TGG | 0.436440 | 5.3:+65141834 | None:intergenic |
| TCCTCTGTCTCCTCCGTTGG+TGG | 0.437208 | 5.3:+65141831 | None:intergenic |
| TGGATCATAACACTCATTAC+TGG | 0.437777 | 5.3:-65139265 | MS.gene29533:CDS |
| TATCTATGGTTATGCAATAG+TGG | 0.444016 | 5.3:-65139670 | MS.gene29533:CDS |
| GTCTCCACCAACTGGATTGA+AGG | 0.450273 | 5.3:+65140194 | None:intergenic |
| CAAACTGTTGGCACTCCTAC+TGG | 0.454589 | 5.3:-65141796 | MS.gene29533:intron |
| TGACATTTCAGTGGCGATCA+TGG | 0.461393 | 5.3:-65139188 | MS.gene29533:CDS |
| TATCTGCATGTTGTTGCATA+AGG | 0.465432 | 5.3:+65139745 | None:intergenic |
| ATCCACCGCAGAATCTCAAC+TGG | 0.468604 | 5.3:+65139283 | None:intergenic |
| CTCCTCCGTTGGTGGTGGGA+GGG | 0.492332 | 5.3:+65141839 | None:intergenic |
| GCTTTGTTGCCTTAAACTTG+AGG | 0.501740 | 5.3:-65139228 | MS.gene29533:CDS |
| TCGTCCTCTGTCTCCTCCGT+TGG | 0.513930 | 5.3:+65141828 | None:intergenic |
| CTGTCTCCTCCGTTGGTGGT+GGG | 0.515019 | 5.3:+65141835 | None:intergenic |
| TCTCCTCCGTTGGTGGTGGG+AGG | 0.515514 | 5.3:+65141838 | None:intergenic |
| CAAGTTTAAGGCAACAAAGC+TGG | 0.520009 | 5.3:+65139231 | None:intergenic |
| AGGAAGAAGTAGTATGCCAT+TGG | 0.521354 | 5.3:+65139645 | None:intergenic |
| AGTTCCTTCAATCCAGTTGG+TGG | 0.527765 | 5.3:-65140198 | MS.gene29533:CDS |
| AACGGAGGAGACAGAGGACG+AGG | 0.532543 | 5.3:-65141826 | MS.gene29533:CDS |
| GAAACAGAACGCACAAATCA+GGG | 0.539403 | 5.3:+65140148 | None:intergenic |
| TACTTCTTCCTTCAGTACAT+GGG | 0.549442 | 5.3:-65139633 | MS.gene29533:CDS |
| GGAAGAAGTAGTATGCCATT+GGG | 0.550097 | 5.3:+65139646 | None:intergenic |
| ATGCAGATAGCGGTACCTCA+TGG | 0.555755 | 5.3:-65139731 | MS.gene29533:CDS |
| AACAGCCAACAAACAATTGG+AGG | 0.555993 | 5.3:-65140293 | MS.gene29533:CDS |
| ATAAGTTCCTTCAATCCAGT+TGG | 0.556827 | 5.3:-65140201 | MS.gene29533:CDS |
| AGGTCTGGCAGTCTTCATCA+AGG | 0.563444 | 5.3:-65139146 | MS.gene29533:CDS |
| CATTTGAACCCATGTACTGA+AGG | 0.576053 | 5.3:+65139625 | None:intergenic |
| CGAGGAGGATATCAAACTGT+TGG | 0.578654 | 5.3:-65141808 | MS.gene29533:CDS |
| ACCACCAACGGAGGAGACAG+AGG | 0.587708 | 5.3:-65141832 | MS.gene29533:CDS |
| GCTATATGAATACGGCTGCA+TGG | 0.592343 | 5.3:-65139695 | MS.gene29533:CDS |
| TATATGGATCTCAACGACAT+TGG | 0.600089 | 5.3:-65139805 | MS.gene29533:CDS |
| ATATTCCCTCCCACCACCAA+CGG | 0.603237 | 5.3:-65141844 | MS.gene29533:CDS |
| ACAGCCAACAAACAATTGGA+GGG | 0.613670 | 5.3:-65140292 | MS.gene29533:CDS |
| ACTCATTACTGGTGTTGCGT+CGG | 0.617025 | 5.3:-65139254 | MS.gene29533:CDS |
| AAGAGATGATGAAAATGGAG+AGG | 0.620309 | 5.3:+65139565 | None:intergenic |
| TAATTCCAGTTGAGATTCTG+CGG | 0.620402 | 5.3:-65139288 | MS.gene29533:CDS |
| AGAGATGATGAAAATGGAGA+GGG | 0.621172 | 5.3:+65139566 | None:intergenic |
| GGAGGAGACAGAGGACGAGG+AGG | 0.623082 | 5.3:-65141823 | MS.gene29533:CDS |
| TTCCCTCCCACCACCAACGG+AGG | 0.630451 | 5.3:-65141841 | MS.gene29533:CDS |
| TTATGCAATAGTGGTCCCAA+TGG | 0.635472 | 5.3:-65139661 | MS.gene29533:CDS |
| ATTGAAGGAACTTATCAACC+TGG | 0.637097 | 5.3:+65140209 | None:intergenic |
| ATACAGATGCTGTTATGACC+AGG | 0.640464 | 5.3:-65140227 | MS.gene29533:CDS |
| AGCCAACAAACAATTGGAGG+GGG | 0.650221 | 5.3:-65140290 | MS.gene29533:CDS |
| CAGCCAACAAACAATTGGAG+GGG | 0.659666 | 5.3:-65140291 | MS.gene29533:CDS |
| AGAAAGCAATGACATTTCAG+TGG | 0.681324 | 5.3:-65139197 | MS.gene29533:CDS |
| TTCCAGTTGAGATTCTGCGG+TGG | 0.686062 | 5.3:-65139285 | MS.gene29533:CDS |
| ATGCAACAACATGCAGATAG+CGG | 0.691113 | 5.3:-65139741 | MS.gene29533:CDS |
| TGTGGCAAGATTTCCAAGCG+AGG | 0.696815 | 5.3:+65139770 | None:intergenic |
| GCTAACATCAAAGCTCCATG+AGG | 0.728832 | 5.3:+65139716 | None:intergenic |
| ATGTTGTTGCATAAGGAATG+TGG | 0.728927 | 5.3:+65139752 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAACAATTAGATTAAC+TGG | + | chr5.3:65140501-65140520 | None:intergenic | 15.0% |
| !! | AAGTAAATAAACTATACAAA+TGG | + | chr5.3:65139719-65139738 | None:intergenic | 15.0% |
| !! | CAATTAATAATAAGTCATAT+TGG | + | chr5.3:65140153-65140172 | None:intergenic | 15.0% |
| !! | CTATCTAATTTATATTACTT+GGG | - | chr5.3:65141648-65141667 | MS.gene29533:intron | 15.0% |
| !! | GACATTAATATATTATCAAA+TGG | + | chr5.3:65140621-65140640 | None:intergenic | 15.0% |
| !! | TTATTTGACAATATATTTGT+TGG | - | chr5.3:65139229-65139248 | MS.gene29533:CDS | 15.0% |
| !! | ACTCGAAATCTTTAATTAAA+TGG | + | chr5.3:65139345-65139364 | None:intergenic | 20.0% |
| !! | ATGAAGTATATACAATTTAG+AGG | + | chr5.3:65139283-65139302 | None:intergenic | 20.0% |
| !! | ATGTATCCATAAAAAATAAG+TGG | + | chr5.3:65141016-65141035 | None:intergenic | 20.0% |
| !! | ATTTAATTAAAGATTTCGAG+TGG | - | chr5.3:65139344-65139363 | MS.gene29533:intron | 20.0% |
| !! | GCTATCTAATTTATATTACT+TGG | - | chr5.3:65141647-65141666 | MS.gene29533:intron | 20.0% |
| !! | TATATAACAGTTTATATTGC+AGG | + | chr5.3:65140347-65140366 | None:intergenic | 20.0% |
| !! | TATTATATATTGTGCAATAG+TGG | - | chr5.3:65139854-65139873 | MS.gene29533:intron | 20.0% |
| !! | TTTAACAAGTAAAGATTGAA+AGG | + | chr5.3:65139449-65139468 | None:intergenic | 20.0% |
| !!! | AGATTTTATCTTCAATGAAA+AGG | + | chr5.3:65139985-65140004 | None:intergenic | 20.0% |
| !!! | TTTTTGTGTTATTGTAGATA+CGG | - | chr5.3:65141148-65141167 | MS.gene29533:intron | 20.0% |
| ! | ACTATTTATTACTAACTGTG+TGG | - | chr5.3:65141121-65141140 | MS.gene29533:intron | 25.0% |
| ! | AGTAAAGATTGAAAGGTAAA+TGG | + | chr5.3:65139442-65139461 | None:intergenic | 25.0% |
| ! | ATAGCTAGAAAACATTTACA+AGG | + | chr5.3:65139583-65139602 | None:intergenic | 25.0% |
| ! | ATCTTCAATGAAAAGGAAAA+AGG | + | chr5.3:65139978-65139997 | None:intergenic | 25.0% |
| ! | CAAATGGCTAAAAATACAAA+TGG | + | chr5.3:65140605-65140624 | None:intergenic | 25.0% |
| ! | GTAAAGATTGAAAGGTAAAT+GGG | + | chr5.3:65139441-65139460 | None:intergenic | 25.0% |
| ! | TAATGTCATTCACTAATTTC+TGG | - | chr5.3:65140634-65140653 | MS.gene29533:intron | 25.0% |
| ! | TAATTCCTATTATTGAGAAG+AGG | + | chr5.3:65140067-65140086 | None:intergenic | 25.0% |
| ! | TCTTCAATGAAAAGGAAAAA+GGG | + | chr5.3:65139977-65139996 | None:intergenic | 25.0% |
| ! | TGATGTTAGCTATATGAATA+CGG | - | chr5.3:65141276-65141295 | MS.gene29533:intron | 25.0% |
| ! | TTCAATGTAATTCACAAAGT+AGG | + | chr5.3:65140422-65140441 | None:intergenic | 25.0% |
| ! | TTTACTGTTATTATGTTCAC+TGG | - | chr5.3:65140379-65140398 | MS.gene29533:intron | 25.0% |
| !! | AACTTACTTTAGCATTTTGT+AGG | - | chr5.3:65140957-65140976 | MS.gene29533:intron | 25.0% |
| !! | ATATATTTGTTGGATTTCCA+TGG | - | chr5.3:65139239-65139258 | MS.gene29533:CDS | 25.0% |
| !! | ATGCACAATCAATGAATTTT+GGG | + | chr5.3:65141094-65141113 | None:intergenic | 25.0% |
| !!! | TATACTCTCATTTTTTACCT+AGG | - | chr5.3:65140540-65140559 | MS.gene29533:intron | 25.0% |
| !!! | TTTTGTGTTATTGTAGATAC+GGG | - | chr5.3:65141149-65141168 | MS.gene29533:intron | 25.0% |
| AACTCCGCAATTTATAACAA+AGG | - | chr5.3:65139934-65139953 | MS.gene29533:intron | 30.0% | |
| AAGAAATTGCATCATTTGCT+AGG | - | chr5.3:65141589-65141608 | MS.gene29533:intron | 30.0% | |
| ACATTTACTGAACTTATCCA+GGG | - | chr5.3:65141053-65141072 | MS.gene29533:intron | 30.0% | |
| ACCTATTTGCAAGAAAAATG+CGG | + | chr5.3:65141817-65141836 | None:intergenic | 30.0% | |
| AGAGTTGCAAATCTTAATGT+GGG | - | chr5.3:65140915-65140934 | MS.gene29533:intron | 30.0% | |
| CAATTTATAACAAAGGAGCT+GGG | - | chr5.3:65139941-65139960 | MS.gene29533:intron | 30.0% | |
| CCATAAAAAATAAGTGGACA+GGG | + | chr5.3:65141010-65141029 | None:intergenic | 30.0% | |
| GTTCAAATGCTAACCTTATA+AGG | - | chr5.3:65141368-65141387 | MS.gene29533:intron | 30.0% | |
| TACATTTACTGAACTTATCC+AGG | - | chr5.3:65141052-65141071 | MS.gene29533:intron | 30.0% | |
| TACTGAAGAGATGATGAAAA+TGG | + | chr5.3:65141422-65141441 | None:intergenic | 30.0% | |
| TAGAGTTGCAAATCTTAATG+TGG | - | chr5.3:65140914-65140933 | MS.gene29533:intron | 30.0% | |
| TATCTATGGTTATGCAATAG+TGG | - | chr5.3:65141309-65141328 | MS.gene29533:intron | 30.0% | |
| TATGTAAGACCTCAAGTTTA+AGG | + | chr5.3:65141763-65141782 | None:intergenic | 30.0% | |
| TCAGTACAATATTAGGTTTG+AGG | + | chr5.3:65139746-65139765 | None:intergenic | 30.0% | |
| TCCATAAAAAATAAGTGGAC+AGG | + | chr5.3:65141011-65141030 | None:intergenic | 30.0% | |
| TTGTTATAAATTGCGGAGTT+TGG | + | chr5.3:65139934-65139953 | None:intergenic | 30.0% | |
| ! | AGCTCCTTTGTTATAAATTG+CGG | + | chr5.3:65139941-65139960 | None:intergenic | 30.0% |
| ! | ATGCTAACCTTATAAGGTTT+TGG | - | chr5.3:65141374-65141393 | MS.gene29533:intron | 30.0% |
| ! | ATTTTTCTTGCAAATAGGTC+TGG | - | chr5.3:65141818-65141837 | MS.gene29533:CDS | 30.0% |
| ! | CATGCACAATCAATGAATTT+TGG | + | chr5.3:65141095-65141114 | None:intergenic | 30.0% |
| ! | CTTTGTAATGAATTGATGAC+CGG | - | chr5.3:65139305-65139324 | MS.gene29533:intron | 30.0% |
| ! | TATTGAAAGTATAGAAGCAC+AGG | + | chr5.3:65140887-65140906 | None:intergenic | 30.0% |
| AAACCAATTATGATGCGATC+TGG | - | chr5.3:65139484-65139503 | MS.gene29533:intron | 35.0% | |
| AACAACAGCCAACAAACAAT+TGG | - | chr5.3:65140683-65140702 | MS.gene29533:intron | 35.0% | |
| AACCAATTATGATGCGATCT+GGG | - | chr5.3:65139485-65139504 | MS.gene29533:intron | 35.0% | |
| AAGAGATGATGAAAATGGAG+AGG | + | chr5.3:65141417-65141436 | None:intergenic | 35.0% | |
| AATTGCGGAGTTTGGAAAAT+AGG | + | chr5.3:65139926-65139945 | None:intergenic | 35.0% | |
| ACAAAATTCATCCCAGTTGT+TGG | + | chr5.3:65141466-65141485 | None:intergenic | 35.0% | |
| ACAATTTAGAGGCTTTCATG+AGG | + | chr5.3:65139272-65139291 | None:intergenic | 35.0% | |
| ACATGCACCAAAACCTTATA+AGG | + | chr5.3:65141384-65141403 | None:intergenic | 35.0% | |
| AGAAAGCAATGACATTTCAG+TGG | - | chr5.3:65141782-65141801 | MS.gene29533:intron | 35.0% | |
| AGAGATGATGAAAATGGAGA+GGG | + | chr5.3:65141416-65141435 | None:intergenic | 35.0% | |
| AGTTCAGTAAATGTATCCCA+TGG | + | chr5.3:65141047-65141066 | None:intergenic | 35.0% | |
| ATAAGTTCCTTCAATCCAGT+TGG | - | chr5.3:65140778-65140797 | MS.gene29533:intron | 35.0% | |
| ATGTTGTTGCATAAGGAATG+TGG | + | chr5.3:65141230-65141249 | None:intergenic | 35.0% | |
| ATTGAAGGAACTTATCAACC+TGG | + | chr5.3:65140773-65140792 | None:intergenic | 35.0% | |
| ATTGCGGAGTTTGGAAAATA+GGG | + | chr5.3:65139925-65139944 | None:intergenic | 35.0% | |
| ATTGTAGATACGGGCTTATA+TGG | - | chr5.3:65141158-65141177 | MS.gene29533:intron | 35.0% | |
| CAAAATTCATCCCAGTTGTT+GGG | + | chr5.3:65141465-65141484 | None:intergenic | 35.0% | |
| CAGAATCAAATCAACAACCT+AGG | + | chr5.3:65140560-65140579 | None:intergenic | 35.0% | |
| CTTGAGATATGCATTACTAG+TGG | + | chr5.3:65140465-65140484 | None:intergenic | 35.0% | |
| GAAGTAGAACTGCTTGATTA+TGG | - | chr5.3:65139678-65139697 | MS.gene29533:CDS | 35.0% | |
| GAGTTGCAAATCTTAATGTG+GGG | - | chr5.3:65140916-65140935 | MS.gene29533:intron | 35.0% | |
| GCAATTTATAACAAAGGAGC+TGG | - | chr5.3:65139940-65139959 | MS.gene29533:intron | 35.0% | |
| GGATACATGTATTAAGCCAT+GGG | - | chr5.3:65141028-65141047 | MS.gene29533:intron | 35.0% | |
| GTATATGTAAGCCTTGAAGA+TGG | + | chr5.3:65140325-65140344 | None:intergenic | 35.0% | |
| TAATTCCAGTTGAGATTCTG+CGG | - | chr5.3:65141691-65141710 | MS.gene29533:intron | 35.0% | |
| TACTTCTTCCTTCAGTACAT+GGG | - | chr5.3:65141346-65141365 | MS.gene29533:intron | 35.0% | |
| TATATGGATCTCAACGACAT+TGG | - | chr5.3:65141174-65141193 | MS.gene29533:intron | 35.0% | |
| TATCTGCATGTTGTTGCATA+AGG | + | chr5.3:65141237-65141256 | None:intergenic | 35.0% | |
| TCCTAAACCCCAAATAACAA+GGG | + | chr5.3:65139650-65139669 | None:intergenic | 35.0% | |
| TGGATACATGTATTAAGCCA+TGG | - | chr5.3:65141027-65141046 | MS.gene29533:intron | 35.0% | |
| TGGATCATAACACTCATTAC+TGG | - | chr5.3:65141714-65141733 | MS.gene29533:intron | 35.0% | |
| TTTCATGAGGAAAAAAGCCA+TGG | + | chr5.3:65139259-65139278 | None:intergenic | 35.0% | |
| ! | ACAAATGGAACATTCTGAGA+CGG | + | chr5.3:65139704-65139723 | None:intergenic | 35.0% |
| ! | ATTACTCTACTATCGGTTGA+GGG | - | chr5.3:65139510-65139529 | MS.gene29533:intron | 35.0% |
| ! | TAAAGATTTCGAGTGGATAC+TGG | - | chr5.3:65139351-65139370 | MS.gene29533:intron | 35.0% |
| ! | TGAACTTATCCAGGGTTTTA+AGG | - | chr5.3:65141061-65141080 | MS.gene29533:intron | 35.0% |
| !! | TACAAATGGCAGCTATTTTC+AGG | + | chr5.3:65140591-65140610 | None:intergenic | 35.0% |
| !! | TATAAGGTTTTGGTGCATGT+GGG | - | chr5.3:65141384-65141403 | MS.gene29533:intron | 35.0% |
| !! | TTATAAGGTTTTGGTGCATG+TGG | - | chr5.3:65141383-65141402 | MS.gene29533:intron | 35.0% |
| !!! | CATGTTAGTTTGTTTTACCG+AGG | + | chr5.3:65140211-65140230 | None:intergenic | 35.0% |
| !!! | CCCTGTCCACTTATTTTTTA+TGG | - | chr5.3:65141007-65141026 | MS.gene29533:intron | 35.0% |
| AACAGCCAACAAACAATTGG+AGG | - | chr5.3:65140686-65140705 | MS.gene29533:intron | 40.0% | |
| AATAACAAGGGGAAAGAGGA+AGG | + | chr5.3:65139638-65139657 | None:intergenic | 40.0% | |
| AATGGATCATTTCTCCACAC+CGG | + | chr5.3:65139327-65139346 | None:intergenic | 40.0% | |
| ACAGCCAACAAACAATTGGA+GGG | - | chr5.3:65140687-65140706 | MS.gene29533:intron | 40.0% | |
| ACTATAGCGCTATTGCATAG+TGG | - | chr5.3:65139790-65139809 | MS.gene29533:CDS | 40.0% | |
| ACTCCTACTGGTATGTTATC+TGG | - | chr5.3:65139195-65139214 | MS.gene29533:CDS | 40.0% | |
| AGAAACAGAACGCACAAATC+AGG | + | chr5.3:65140835-65140854 | None:intergenic | 40.0% | |
| AGCTGCCTCTTCTCAATAAT+AGG | - | chr5.3:65140059-65140078 | MS.gene29533:intron | 40.0% | |
| AGGAAGAAGTAGTATGCCAT+TGG | + | chr5.3:65141337-65141356 | None:intergenic | 40.0% | |
| ATACAGATGCTGTTATGACC+AGG | - | chr5.3:65140752-65140771 | MS.gene29533:intron | 40.0% | |
| ATGCAACAACATGCAGATAG+CGG | - | chr5.3:65141238-65141257 | MS.gene29533:intron | 40.0% | |
| CAAGCAGTTCTACTTCAAAC+TGG | + | chr5.3:65139674-65139693 | None:intergenic | 40.0% | |
| CATTTGAACCCATGTACTGA+AGG | + | chr5.3:65141357-65141376 | None:intergenic | 40.0% | |
| CCTAAACCCCAAATAACAAG+GGG | + | chr5.3:65139649-65139668 | None:intergenic | 40.0% | |
| CTACTTCTTCCTTCAGTACA+TGG | - | chr5.3:65141345-65141364 | MS.gene29533:intron | 40.0% | |
| CTCCTAAACCCCAAATAACA+AGG | + | chr5.3:65139651-65139670 | None:intergenic | 40.0% | |
| CTCCTACTGGTATGTTATCT+GGG | - | chr5.3:65139196-65139215 | MS.gene29533:CDS | 40.0% | |
| CTGGGTCATTACTCTACTAT+CGG | - | chr5.3:65139503-65139522 | MS.gene29533:intron | 40.0% | |
| GAAACAGAACGCACAAATCA+GGG | + | chr5.3:65140834-65140853 | None:intergenic | 40.0% | |
| GCCAGAGTGTAGTTAAATAG+CGG | - | chr5.3:65139766-65139785 | MS.gene29533:CDS | 40.0% | |
| GGAAATGATCCTTAAAACCC+TGG | + | chr5.3:65141073-65141092 | None:intergenic | 40.0% | |
| GGAAGAAGTAGTATGCCATT+GGG | + | chr5.3:65141336-65141355 | None:intergenic | 40.0% | |
| GTTGTTCAAATGCTTCTGCA+TGG | + | chr5.3:65140669-65140688 | None:intergenic | 40.0% | |
| TTATGCAATAGTGGTCCCAA+TGG | - | chr5.3:65141318-65141337 | MS.gene29533:intron | 40.0% | |
| TTGCGGAGTTTGGAAAATAG+GGG | + | chr5.3:65139924-65139943 | None:intergenic | 40.0% | |
| ! | CAAGTTTAAGGCAACAAAGC+TGG | + | chr5.3:65141751-65141770 | None:intergenic | 40.0% |
| ! | CATTACTCTACTATCGGTTG+AGG | - | chr5.3:65139509-65139528 | MS.gene29533:intron | 40.0% |
| ! | CTCTGGCTCAGTACAATATT+AGG | + | chr5.3:65139753-65139772 | None:intergenic | 40.0% |
| ! | GCCGCATTTTTCTTGCAAAT+AGG | - | chr5.3:65141813-65141832 | MS.gene29533:CDS | 40.0% |
| ! | GCTTTGTTGCCTTAAACTTG+AGG | - | chr5.3:65141751-65141770 | MS.gene29533:intron | 40.0% |
| ! | TAATGAATTGATGACCGGTG+TGG | - | chr5.3:65139310-65139329 | MS.gene29533:intron | 40.0% |
| !! | ATAAGGTTTTGGTGCATGTG+GGG | - | chr5.3:65141385-65141404 | MS.gene29533:intron | 40.0% |
| !! | CCTCTTTCCCCTTGTTATTT+GGG | - | chr5.3:65139639-65139658 | MS.gene29533:CDS | 40.0% |
| !! | CTCTTTCCCCTTGTTATTTG+GGG | - | chr5.3:65139640-65139659 | MS.gene29533:CDS | 40.0% |
| !! | TCCTCTTTCCCCTTGTTATT+TGG | - | chr5.3:65139638-65139657 | MS.gene29533:CDS | 40.0% |
| AAAATAAGTGGACAGGGAGC+TGG | + | chr5.3:65141004-65141023 | None:intergenic | 45.0% | |
| AACCCCCTCCAATTGTTTGT+TGG | + | chr5.3:65140694-65140713 | None:intergenic | 45.0% | |
| AGCCAACAAACAATTGGAGG+GGG | - | chr5.3:65140689-65140708 | MS.gene29533:intron | 45.0% | |
| AGTTCCTTCAATCCAGTTGG+TGG | - | chr5.3:65140781-65140800 | MS.gene29533:intron | 45.0% | |
| CAGCCAACAAACAATTGGAG+GGG | - | chr5.3:65140688-65140707 | MS.gene29533:intron | 45.0% | |
| CCCAAATAACAAGGGGAAAG+AGG | + | chr5.3:65139642-65139661 | None:intergenic | 45.0% | |
| CGAGGAGGATATCAAACTGT+TGG | - | chr5.3:65139171-65139190 | MS.gene29533:CDS | 45.0% | |
| GACCCAGATAACATACCAGT+AGG | + | chr5.3:65139201-65139220 | None:intergenic | 45.0% | |
| GACCCAGATCGCATCATAAT+TGG | + | chr5.3:65139490-65139509 | None:intergenic | 45.0% | |
| GCAACTGTGTACCATCTTCA+AGG | - | chr5.3:65140311-65140330 | MS.gene29533:intron | 45.0% | |
| GCCGCTATTTAACTACACTC+TGG | + | chr5.3:65139770-65139789 | None:intergenic | 45.0% | |
| GCTAACATCAAAGCTCCATG+AGG | + | chr5.3:65141266-65141285 | None:intergenic | 45.0% | |
| GCTATATGAATACGGCTGCA+TGG | - | chr5.3:65141284-65141303 | MS.gene29533:intron | 45.0% | |
| TCTTCCTAAGCCCAACAACT+GGG | - | chr5.3:65141452-65141471 | MS.gene29533:intron | 45.0% | |
| TGACATTTCAGTGGCGATCA+TGG | - | chr5.3:65141791-65141810 | MS.gene29533:intron | 45.0% | |
| TGGCAGTCTTCATCAAGGTT+TGG | - | chr5.3:65141838-65141857 | MS.gene29533:CDS | 45.0% | |
| TTCTTCCTAAGCCCAACAAC+TGG | - | chr5.3:65141451-65141470 | MS.gene29533:intron | 45.0% | |
| !! | ACTCATTACTGGTGTTGCGT+CGG | - | chr5.3:65141725-65141744 | MS.gene29533:intron | 45.0% |
| !! | CCCCTTGTTATTTGGGGTTT+AGG | - | chr5.3:65139646-65139665 | MS.gene29533:CDS | 45.0% |
| ACGGCTGCATGGTCTATCTA+TGG | - | chr5.3:65141295-65141314 | MS.gene29533:intron | 50.0% | |
| AGGTCTGGCAGTCTTCATCA+AGG | - | chr5.3:65141833-65141852 | MS.gene29533:CDS | 50.0% | |
| ATATTCCCTCCCACCACCAA+CGG | - | chr5.3:65139135-65139154 | MS.gene29533:CDS | 50.0% | |
| ATCCACCGCAGAATCTCAAC+TGG | + | chr5.3:65141699-65141718 | None:intergenic | 50.0% | |
| CAAACTGTTGGCACTCCTAC+TGG | - | chr5.3:65139183-65139202 | MS.gene29533:CDS | 50.0% | |
| CTCAATCATCAGCTGCTCCT+CGG | - | chr5.3:65140191-65140210 | MS.gene29533:CDS | 50.0% | |
| CTGAAGAAGTCTCCACCAAC+TGG | + | chr5.3:65140796-65140815 | None:intergenic | 50.0% | |
| GTCTCCACCAACTGGATTGA+AGG | + | chr5.3:65140788-65140807 | None:intergenic | 50.0% | |
| GTCTTTGTACTTGCCTCGCT+TGG | - | chr5.3:65141196-65141215 | MS.gene29533:intron | 50.0% | |
| TCATCCCAGTTGTTGGGCTT+AGG | + | chr5.3:65141459-65141478 | None:intergenic | 50.0% | |
| TGTGGCAAGATTTCCAAGCG+AGG | + | chr5.3:65141212-65141231 | None:intergenic | 50.0% | |
| TTCCAGTTGAGATTCTGCGG+TGG | - | chr5.3:65141694-65141713 | MS.gene29533:intron | 50.0% | |
| TTGTGCAATAGTGGCTCCAG+CGG | - | chr5.3:65139863-65139882 | MS.gene29533:intron | 50.0% | |
| ! | ATGCAGATAGCGGTACCTCA+TGG | - | chr5.3:65141248-65141267 | MS.gene29533:intron | 50.0% |
| TAAGTGGACAGGGAGCTGGA+AGG | + | chr5.3:65141000-65141019 | None:intergenic | 55.0% | |
| AACGGAGGAGACAGAGGACG+AGG | - | chr5.3:65139153-65139172 | MS.gene29533:CDS | 60.0% | |
| ACCACCAACGGAGGAGACAG+AGG | - | chr5.3:65139147-65139166 | MS.gene29533:CDS | 60.0% | |
| CAACAGCGCTATAGTGCCGC+TGG | + | chr5.3:65139882-65139901 | None:intergenic | 60.0% | |
| TCCTCTGTCTCCTCCGTTGG+TGG | + | chr5.3:65139151-65139170 | None:intergenic | 60.0% | |
| TCGTCCTCTGTCTCCTCCGT+TGG | + | chr5.3:65139154-65139173 | None:intergenic | 60.0% | |
| ! | TCTGTCTCCTCCGTTGGTGG+TGG | + | chr5.3:65139148-65139167 | None:intergenic | 60.0% |
| !! | CTGTCTCCTCCGTTGGTGGT+GGG | + | chr5.3:65139147-65139166 | None:intergenic | 60.0% |
| GGAGGAGACAGAGGACGAGG+AGG | - | chr5.3:65139156-65139175 | MS.gene29533:CDS | 65.0% | |
| TTCCCTCCCACCACCAACGG+AGG | - | chr5.3:65139138-65139157 | MS.gene29533:CDS | 65.0% | |
| !! | CTCCTCCGTTGGTGGTGGGA+GGG | + | chr5.3:65139143-65139162 | None:intergenic | 65.0% |
| !! | TCTCCTCCGTTGGTGGTGGG+AGG | + | chr5.3:65139144-65139163 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 65139129 | 65141872 | 65139129 | ID=MS.gene29533 |
| chr5.3 | mRNA | 65139129 | 65141872 | 65139129 | ID=MS.gene29533.t1;Parent=MS.gene29533 |
| chr5.3 | exon | 65141797 | 65141872 | 65141797 | ID=MS.gene29533.t1.exon1;Parent=MS.gene29533.t1 |
| chr5.3 | CDS | 65141797 | 65141872 | 65141797 | ID=cds.MS.gene29533.t1;Parent=MS.gene29533.t1 |
| chr5.3 | exon | 65140162 | 65140327 | 65140162 | ID=MS.gene29533.t1.exon2;Parent=MS.gene29533.t1 |
| chr5.3 | CDS | 65140162 | 65140327 | 65140162 | ID=cds.MS.gene29533.t1;Parent=MS.gene29533.t1 |
| chr5.3 | exon | 65139563 | 65139836 | 65139563 | ID=MS.gene29533.t1.exon3;Parent=MS.gene29533.t1 |
| chr5.3 | CDS | 65139563 | 65139836 | 65139563 | ID=cds.MS.gene29533.t1;Parent=MS.gene29533.t1 |
| chr5.3 | exon | 65139129 | 65139320 | 65139129 | ID=MS.gene29533.t1.exon4;Parent=MS.gene29533.t1 |
| chr5.3 | CDS | 65139129 | 65139320 | 65139129 | ID=cds.MS.gene29533.t1;Parent=MS.gene29533.t1 |
| Gene Sequence |
| Protein sequence |
