AlfalfaGEDB | MS.gene29645

M. sativa cultivar XinJiangDaYe / MS.gene29645

KEGG: K05857
GO: GO:0003674 GO:0003824 GO:0004435 GO:0004620 GO:0004629 GO:0006629 GO:0007165 GO:0008081 GO:0008150 GO:0008152 GO:0009987 GO:0016298 GO:0016787 GO:0016788 GO:0035556 GO:0042578 GO:0044238 GO:0050789 GO:0050794 GO:0065007 GO:0071704
PFAM: PF00168.33 PF00387.22 PF00388.22 PF09279.14

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29645.t1	XP_003616636.1	99.2	589	5	0	1	589	1	589	0.00E+00	1192.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29645.t1	Q39033	67.7	591	177	6	1	588	1	580	1.6e-236	820.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29645.t1	G7KH12	99.2	589	5	0	1	589	1	589	0.0e+00	1192.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049264	MS.gene29645	0.805549	1.27E-49	-1.69E-46
MS.gene051490	MS.gene29645	0.808387	3.18E-50	-1.69E-46
MS.gene052463	MS.gene29645	0.8042	2.42E-49	-1.69E-46
MS.gene055469	MS.gene29645	0.813291	2.76E-51	-1.69E-46
MS.gene059439	MS.gene29645	0.810166	1.32E-50	-1.69E-46
MS.gene059774	MS.gene29645	0.819878	9.22E-53	-1.69E-46
MS.gene060697	MS.gene29645	0.818405	1.99E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene29645.t1	MTR_5g082620	99.151	589	5	0	1	589	1	589	1214
MS.gene29645.t1	MTR_3g070720	75.932	590	134	5	3	588	7	592	874
MS.gene29645.t1	MTR_3g069280	74.042	574	138	5	17	588	7	571	820
MS.gene29645.t1	MTR_5g071010	62.121	594	212	7	5	588	3	593	755
MS.gene29645.t1	MTR_3g070720	74.141	495	120	5	3	493	7	497	700
MS.gene29645.t1	MTR_5g082590	59.413	579	205	9	24	588	19	581	690
MS.gene29645.t1	MTR_3g070720	72.747	466	119	5	3	464	7	468	635
MS.gene29645.t1	MTR_3g070710	52.972	572	248	9	26	588	27	586	593
MS.gene29645.t1	MTR_5g082580	50.250	601	276	9	6	588	11	606	586
MS.gene29645.t1	MTR_5g071040	51.684	594	241	12	3	588	17	572	586

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene29645.t1	AT3G08510	68.020	591	175	6	1	588	1	580	834
MS.gene29645.t1	AT3G08510	68.020	591	175	6	1	588	1	580	834
MS.gene29645.t1	AT3G55940	66.498	594	182	7	1	588	1	583	798
MS.gene29645.t1	AT3G08510	63.790	591	171	7	1	588	1	551	758
MS.gene29645.t1	AT3G08510	63.790	591	171	7	1	588	1	551	758
MS.gene29645.t1	AT2G40116	61.781	539	190	6	56	588	84	612	680
MS.gene29645.t1	AT5G58700	57.621	597	231	12	5	588	9	596	675
MS.gene29645.t1	AT5G58700	57.621	597	231	12	5	588	9	596	675
MS.gene29645.t1	AT5G58700	63.190	489	173	6	103	588	4	488	632
MS.gene29645.t1	AT5G58690	53.367	594	244	10	5	588	7	577	626

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Find 135 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGGATGATTCACTGCA+CGG	0.615717	5.1:+64748305	MS.gene29645:CDS
AAATAGATCCGGAGAAAGTG+AGG	0.601407	5.1:+64748633	MS.gene29645:CDS
AACAAACCTAACTTGAAGCT+CGG	0.526863	5.1:-64748368	None:intergenic
AACATAACCACACCCTCCAT+TGG	0.506899	5.1:-64749966	None:intergenic
AACGACTGGTCCGGATAATG+AGG	0.561220	5.1:+64750009	MS.gene29645:CDS
AAGAACATCAACATTATCCT+TGG	0.475267	5.1:-64747316	None:intergenic
AAGAGGGTCTTGATCTCTTG+TGG	0.493379	5.1:-64745414	None:intergenic
AAGCATCTAATGAGCTCCAC+AGG	0.560130	5.1:-64747688	None:intergenic
AAGCGTTGCAGAGAGGTGTA+AGG	0.494457	5.1:+64747262	MS.gene29645:CDS
AAGGTACTCCTTAGGTGGTT+TGG	0.352592	5.1:-64748261	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGCGAAAAAAAATGCAG+CGG	-	chr5.1:64746785-64746804	None:intergenic	30.0%
AAATTAGATACACTTGGATG+AGG	-	chr5.1:64750104-64750123	None:intergenic	30.0%
AACCTTAAAACGCCAATTAA+CGG	-	chr5.1:64748834-64748853	None:intergenic	30.0%
AAGAACATCAACATTATCCT+TGG	-	chr5.1:64747319-64747338	None:intergenic	30.0%
ACAAAGGTAATGTCATATCA+TGG	-	chr5.1:64747158-64747177	None:intergenic	30.0%
ACATGGTGAACTATATGTAT+TGG	+	chr5.1:64746514-64746533	MS.gene29645:intron	30.0%
AGGCGATTAAAGTATAAAAG+TGG	-	chr5.1:64747375-64747394	None:intergenic	30.0%
ATATAATCAAAAGTGAGCCT+AGG	+	chr5.1:64746075-64746094	MS.gene29645:intron	30.0%
ATCATACTTCACTTGTTCTT+AGG	+	chr5.1:64750152-64750171	MS.gene29645:intron	30.0%
ATTATAATCCCTTAATTGGG+TGG	+	chr5.1:64749324-64749343	MS.gene29645:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	64745345	64750666	64745345	ID=MS.gene29645
chr5.1	mRNA	64745345	64750666	64745345	ID=MS.gene29645.t1;Parent=MS.gene29645
chr5.1	exon	64745345	64745650	64745345	ID=MS.gene29645.t1.exon1;Parent=MS.gene29645.t1
chr5.1	CDS	64745345	64745650	64745345	ID=cds.MS.gene29645.t1;Parent=MS.gene29645.t1
chr5.1	exon	64747150	64747346	64747150	ID=MS.gene29645.t1.exon2;Parent=MS.gene29645.t1
chr5.1	CDS	64747150	64747346	64747150	ID=cds.MS.gene29645.t1;Parent=MS.gene29645.t1
chr5.1	exon	64747675	64747810	64747675	ID=MS.gene29645.t1.exon3;Parent=MS.gene29645.t1
chr5.1	CDS	64747675	64747810	64747675	ID=cds.MS.gene29645.t1;Parent=MS.gene29645.t1
chr5.1	exon	64748158	64748403	64748158	ID=MS.gene29645.t1.exon4;Parent=MS.gene29645.t1
chr5.1	CDS	64748158	64748403	64748158	ID=cds.MS.gene29645.t1;Parent=MS.gene29645.t1
chr5.1	exon	64748488	64748720	64748488	ID=MS.gene29645.t1.exon5;Parent=MS.gene29645.t1
chr5.1	CDS	64748488	64748720	64748488	ID=cds.MS.gene29645.t1;Parent=MS.gene29645.t1
chr5.1	exon	64749265	64749382	64749265	ID=MS.gene29645.t1.exon6;Parent=MS.gene29645.t1
chr5.1	CDS	64749265	64749382	64749265	ID=cds.MS.gene29645.t1;Parent=MS.gene29645.t1
chr5.1	exon	64749923	64750075	64749923	ID=MS.gene29645.t1.exon7;Parent=MS.gene29645.t1
chr5.1	CDS	64749923	64750075	64749923	ID=cds.MS.gene29645.t1;Parent=MS.gene29645.t1
chr5.1	exon	64750174	64750260	64750174	ID=MS.gene29645.t1.exon8;Parent=MS.gene29645.t1
chr5.1	CDS	64750174	64750260	64750174	ID=cds.MS.gene29645.t1;Parent=MS.gene29645.t1
chr5.1	exon	64750373	64750666	64750373	ID=MS.gene29645.t1.exon9;Parent=MS.gene29645.t1
chr5.1	CDS	64750373	64750666	64750373	ID=cds.MS.gene29645.t1;Parent=MS.gene29645.t1

Gene Sequence

>MS.gene29645

ATGTCAAAACAAACATACAGTGTTTGTTTATGCTGGCGTAGAAGATTCAAGCTAGCTTTATCAGAAGCACCACAAGAGATCAAGACCCTCTTTGAACAATACTCAGAAAATGATCTCATGACACCTTCAAACCTCAAAAGATTCTTAATTGAAATACAAAAACAAGAACAAGCTACTGAAGAAGAAGCACAAGCTATCATTGACAGTTTCAAGCATTTCCATAGAAGGGGTGCTGGACTTAATCTTGAAACTTTTTTCAAGTTTCTCTTTAGTGATAGTAACCTTGCTCTTTTATCTCCAATTGGGGTAAGTAAAAAAAAGTAAAAATTATTTTTTTATTTTTTTTACTTGTTTTAGTTTCTGAACCTTGTCATGTTTTTTGGTCAACTGAATCTGTATTTGGTTGATTTTCAATTATGTTGTTCTTTGTGGATTTTCTTACTAGATTCAGTAGTACCTTGTTTAATGCCTTTCATTTTCTCAGTTTTTGTTTTTATTAACATTTTTGTCTTTTATTGTCAATTTAGGCTAACATGATAACACTCTCTCTACAATAACTTGTACTACATAGTAATTCAGGTCAATTGCGTCTGAAATTTGATAGTAATTCAGATTCATATTGATGCTAAGTGACTCAAATTTAGACCGAATTCTACATTAAATACATCAATTTTGTTTGTTTCACTTTTGCTAATATTTTGCAACGGAGTATATGCTAATAAAATACTATATATAATCAAAAGTGAGCCTAGGAAAGTTGATGTATTTTGACAAAATTTTGAATAAAATACACATCAATTTTGTTTGACTCGTGTTTGCTTATATTTTGCAACTTGAGTATATGCAAATAAAATATAGTCAAAAGTGAGTCAATAAACGTTGATGTATTTGGACCAAATGTTGAACCAAATACATCAATTTTGTTTAGCTCGTTTTTGCTTACATTTTGCAACGGAGTATATGCTAATAAAATATAGTCAAAAGTGAGTCAAAAAAAGTTGATGTATTTGAACCAAATTTTGAATCAAATACATCAATTTTGTTTGACTCGTTTTTGCTTATATTTTGCAATGGAGTATATGCTAAGTATATACTTTGGACTCTTACTCCCCTAAAAAACAATATGTACTTGTAGTCATTCATTATATTTTGTTTAAGGGTGAAGGTTAACATGGTGAACTATATGTATTGGTCCATCGCGGTGAACTCAAAAATAACCATTGCCTTAATAATTAAAAAAAATGCACTAGTAAAGTTTACATTTCTTTACATTAACAGTCACTTTCTTTAAGAAATGGGATTTTGGTTTTTTCTGTTTTTTATTTCGGGGCATTGCAGGATATACCTAGTTCTAAATTGTGGTCCACAACCACAATTGCAGCCACAATATAAAGAATTTAGATGTATCTTGCAACAAAATTGCAATTGCGGCTGTATCCGCTGCATTTTTTTTCGCATTTTAGCATAATATCAAAGTTTGCGGTGTAATTGCGACCATAATTTAGAACTATGGGATATACCATATGGCATCACATTGGCTTTCATTTTAGTTTCTATATTGCTTTTGATTTTGTTCACACTTTACACACTTTTGGTTATTTAGTTCAGAATCTTATTTTCGAGTGCCTTAATTATGTACAATTCAACCCTCAAGGTATTACTTCAACGAGGGTTTAAGGCCATAACTTTAATTAACAAACCGCTCATAAATCATCATTACTAAGGTATATAAGATAGTATGTCTTTTATAACTGTAACTTGTACTTGTTCTCTTGTTCTGATCTGTGTTTTTTGTTGTATTCCAGGTGCACCATGATATGACATTACCTTTGTCCCATTATTTCATATATACTGGTCACAATTCCTATCTAACCGGGAATCAGCTGAGCAGTGACTGCAGCGACATTCCAATCGTGAAAGCGTTGCAGAGAGGTGTAAGGGTAATTGAGTTGGACTTGTGGCCTAATGCATCCAAGGATAATGTTGATGTTCTTCATGGAAGGTAATCTTACAAGTTTGAAAAATGTCCACTTTTATACTTTAATCGCCTTCTATTTTCTTGATAATGATGTCACCTGGTTGAATTGCAGCAAAAATGCTACAAATTCTAGTATTTTTGGTGCAATCTGGCAAAATATAATAAATGATACACAAGCAAAAGTTCGAAATCATTGACAATTATGAAAAATTAATAGAAAATCATGATTGTCAGGCAATATAAATGATAACTCATACCATATCAGCATATCATTTTTACATTGCCAATTGTATCCAGAAATTATTTTCTTGAAAATTTGAAATATAACTGTTTACATTTTTTTAATCTCTAGGACATTGACTACTCCTGTGGAGCTCATTAGATGCTTGAGGTCTATTAAGGAACATGCCTTCGTCGCGTCAGAATTTCCGGTTGTAATAACCCTAGAAGACCATCTTACTCCAGATCTTCAAGCCAAAGTGGCCGAGGTTAGTTAACTGAAGTTGTATTGGGATTGAAAATATTTTTCTGTGTGGATAAGCTGTTTATGTATAAGTAACTTAATTAAGAACATATTAAATAAGTACTTATATATAAGCTAACAAAAGCTAAAATAAAGTCAAAATTGTTTTCATATATAAGCTGTTTTTATAACCTAACCTGGAGAACTAATGGAGATAAGCTAAAAACAGCTTATGGACAGACATATCATAAGATATTTCCATAAGCTCTTCCAAACAGTGTCTAAGTGCTTATGCAAGTAGATACGCTCAAATAAGTCAATCTTGACAGGCTATTACATTAATATAGTTGACAATTATGTCTAAATTTTTAGATGGTTACTTCAACATTTGGAGACATACTATTTGTACCTGGCTCAGAAAGCTTGAAGGAATTTCCTTCTCCTGAATCACTTAAAAAGAGGATTATTATATCAACCAAACCACCTAAGGAGTACCTTGAGACAAAAGAAGTAAAGGAAAAAGAGGATGATTCACTGCACGGAAAGGCTTCAGGCGACGATGAAGCGTGGGGGACAGAGATCCCGAGCTTCAAGTTAGGTTTGTTATCCGATTACAAGGTACGAGACTAAACCAATTTTATTTGCACTTCAATTAATAATTTTAGGGAGATTTGTTAACTGCATATAAATTTCCATCTTTAGGGAAACAGTTTGGATAAAGAATATTTTCATGACGAGGAAGAGCTTTCTGAATCAGACAAGTCACATCACCACGTAGCTCCAGAATATAAAGGTTTAATTGCCATTCATGCTGGGAAGTCGAAAGGAGGAATAGACGCATGGCTCAAAATAGATCCGGAGAAAGTGAGGCGTATAAGTTTAAGTGAGCAACAACTTGAAAAGGCTGCTATAACTCATGGAAAAGAAATTGTCAGGTATATTGTTAAATGTTTCTAGTGAGTCCTTTTTATGTTTGAAATGAATGAACTGCTGCTATCTCTGACTCTATCCCATGGTGTTGCTCAACATATATTTCTTACTACCTCCGTTAATTGGCGTTTTAAGGTTATTTCCACGTACAAAAAAAATCAATAAATTTTGTTACTTTTGATCAAGTTATTTCTTTTTCCTATAATTCCTATTTGATATCCCATTTCACATATTTCACTCTGCAATAAATAGTCAGGGATAATTTTGACGAAATTTAAAAGGAACGGAGATAGTATTTTTCTAATATTCGGACCTTCTGTATTCTATTTCCCTGATTGAAATTCTACTACTTTTGTTGGCCATTTTCCTGTTGTATTGTATCACATTTATTGTGGTTTAAATTAGTTTATGTCTCTCCATCAACTTGATCTATCTAATAGGAAAATGTTTTGGTTGTTGCTATTGAATATGTTTATGTCTATGTGTGCGCGAGTGTGTCTATCTGTGTGCGAATAAATTTTTATTTACCTGATTGTTGGTCTGCTATAGGTTTACTCAGAAGAATATTCTGAGGGTGTTTCCAAAAGGTACTCGCATTGACTCGTCAAATTATAATCCCTTAATTGGGTGGATTCATGGAGCTCAAATGGTTGCATTCAACATGCAGGTTTCTATTTCTCCCTCTTCAGTGTTTTTTCATTTTTTTCCCTTCTTCTCTACGAGAGCAGGAGGAAAAATAAATCGATAGCCTTCAAGCTACCAAGTGCTGACAAAATATTTTAGCTTTTGATAGTAGTCTTATGAAGCACTGGCTTAGACACCAGAAACGACACAGACACATAGATACCAGTAATATTTTGAGAAAATAGAAGTAATTGAATGCAGTCATATATGTCACTGTTGGACACTGGACACAACTTTGATCTAAAGCGTCAGGGCGACATAGGAACAATCAACATTCGACATATAGCAATGTGATAGTTGAAATATGAGCCGGTCCTTTTTGAGCAGGATTTATAATTTATTGAATATCTTAGTTTATGTTTATTATCGTCTACACTTTTCACGCAAGTTACGATGTGAGGTTAAGTTAACACTGGTAGAGGTTGCTACTACACAATACCCACATCTAATATGATAAAATCTATTATTGATAATGATGTTGGCTGTTCTAAGTTAGTTTTCATTGTGCTTGGTTCCATTGTAGGGGTATGGGAGATCACTTTGGCTGATGCATGGAATGTTTAGAGCCAATGGAGGGTGTGGTTATGTTAAAAAACCAGATTTTCTCTTAACGACTGGTCCGGATAATGAGGTCTTTGATCCTAAAGCTAAGTTACCTGTGAAGACTACTTTGAAGGTAAGGGTTTTTCATGAATCAGCTACCTCATCCAAGTGTATCTAATTTAATATTCAATATTAACCAATATAGTAATATCATACTTCACTTGTTCTTAGGTGACTGTATATATGGGAGAAGGATGGTATTATGATTTCAAACATACACACTTTGATCAATATTCACCTCCAGATTTCTATGCAAGAGTAAGTTAAAGTTATCTATTAATCCTTTTTTCAGCTTATTTCCATAAGCTCTCCAGAATAGCTTATAAACAATTTGACTTAATTTGAAATTGATTTGATAATTTAAATACAGGTTGGGATTGCTGGAGTCCCTAGTGATAGTATAATGAAAAAAACAAGGGCAATAGAGGATAACTGGCTGCCTACATGGAACGAGGTATTTGAGTTCCCGCTTACTGTTCCGGAACTAGCCCTTCTTCGTATAGAAGTTCACGAGTATGACATGTCCGAGAAAGATGATTTTGGTGGCCAAACATGCTTACCTGTTTCGGAGCTAAGGAGTGGCGTTCGAGCAGTTTCTCTGCATAGCCAGAAGGGAGATAAATACAACTCTGTAAAGCTTCTTATGCGCTTTGAATTTCATTGA

Protein sequence

>MS.gene29645.t1

MSKQTYSVCLCWRRRFKLALSEAPQEIKTLFEQYSENDLMTPSNLKRFLIEIQKQEQATEEEAQAIIDSFKHFHRRGAGLNLETFFKFLFSDSNLALLSPIGVHHDMTLPLSHYFIYTGHNSYLTGNQLSSDCSDIPIVKALQRGVRVIELDLWPNASKDNVDVLHGRTLTTPVELIRCLRSIKEHAFVASEFPVVITLEDHLTPDLQAKVAEMVTSTFGDILFVPGSESLKEFPSPESLKKRIIISTKPPKEYLETKEVKEKEDDSLHGKASGDDEAWGTEIPSFKLGLLSDYKGNSLDKEYFHDEEELSESDKSHHHVAPEYKGLIAIHAGKSKGGIDAWLKIDPEKVRRISLSEQQLEKAAITHGKEIVRFTQKNILRVFPKGTRIDSSNYNPLIGWIHGAQMVAFNMQGYGRSLWLMHGMFRANGGCGYVKKPDFLLTTGPDNEVFDPKAKLPVKTTLKVTVYMGEGWYYDFKHTHFDQYSPPDFYARVGIAGVPSDSIMKKTRAIEDNWLPTWNEVFEFPLTVPELALLRIEVHEYDMSEKDDFGGQTCLPVSELRSGVRAVSLHSQKGDKYNSVKLLMRFEFH