Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29645.t1 | XP_003616636.1 | 99.2 | 589 | 5 | 0 | 1 | 589 | 1 | 589 | 0.00E+00 | 1192.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29645.t1 | Q39033 | 67.7 | 591 | 177 | 6 | 1 | 588 | 1 | 580 | 1.6e-236 | 820.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29645.t1 | G7KH12 | 99.2 | 589 | 5 | 0 | 1 | 589 | 1 | 589 | 0.0e+00 | 1192.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049264 | MS.gene29645 | 0.805549 | 1.27E-49 | -1.69E-46 |
| MS.gene051490 | MS.gene29645 | 0.808387 | 3.18E-50 | -1.69E-46 |
| MS.gene052463 | MS.gene29645 | 0.8042 | 2.42E-49 | -1.69E-46 |
| MS.gene055469 | MS.gene29645 | 0.813291 | 2.76E-51 | -1.69E-46 |
| MS.gene059439 | MS.gene29645 | 0.810166 | 1.32E-50 | -1.69E-46 |
| MS.gene059774 | MS.gene29645 | 0.819878 | 9.22E-53 | -1.69E-46 |
| MS.gene060697 | MS.gene29645 | 0.818405 | 1.99E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29645.t1 | MTR_5g082620 | 99.151 | 589 | 5 | 0 | 1 | 589 | 1 | 589 | 0.0 | 1214 |
| MS.gene29645.t1 | MTR_3g070720 | 75.932 | 590 | 134 | 5 | 3 | 588 | 7 | 592 | 0.0 | 874 |
| MS.gene29645.t1 | MTR_3g069280 | 74.042 | 574 | 138 | 5 | 17 | 588 | 7 | 571 | 0.0 | 820 |
| MS.gene29645.t1 | MTR_5g071010 | 62.121 | 594 | 212 | 7 | 5 | 588 | 3 | 593 | 0.0 | 755 |
| MS.gene29645.t1 | MTR_3g070720 | 74.141 | 495 | 120 | 5 | 3 | 493 | 7 | 497 | 0.0 | 700 |
| MS.gene29645.t1 | MTR_5g082590 | 59.413 | 579 | 205 | 9 | 24 | 588 | 19 | 581 | 0.0 | 690 |
| MS.gene29645.t1 | MTR_3g070720 | 72.747 | 466 | 119 | 5 | 3 | 464 | 7 | 468 | 0.0 | 635 |
| MS.gene29645.t1 | MTR_3g070710 | 52.972 | 572 | 248 | 9 | 26 | 588 | 27 | 586 | 0.0 | 593 |
| MS.gene29645.t1 | MTR_5g082580 | 50.250 | 601 | 276 | 9 | 6 | 588 | 11 | 606 | 0.0 | 586 |
| MS.gene29645.t1 | MTR_5g071040 | 51.684 | 594 | 241 | 12 | 3 | 588 | 17 | 572 | 0.0 | 586 |
| MS.gene29645.t1 | MTR_3g070560 | 52.586 | 580 | 254 | 9 | 17 | 586 | 17 | 585 | 0.0 | 578 |
| MS.gene29645.t1 | MTR_3g070720 | 71.256 | 414 | 111 | 5 | 3 | 412 | 7 | 416 | 0.0 | 538 |
| MS.gene29645.t1 | MTR_3g070560 | 56.057 | 421 | 173 | 5 | 168 | 586 | 2 | 412 | 2.53e-162 | 470 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29645.t1 | AT3G08510 | 68.020 | 591 | 175 | 6 | 1 | 588 | 1 | 580 | 0.0 | 834 |
| MS.gene29645.t1 | AT3G08510 | 68.020 | 591 | 175 | 6 | 1 | 588 | 1 | 580 | 0.0 | 834 |
| MS.gene29645.t1 | AT3G55940 | 66.498 | 594 | 182 | 7 | 1 | 588 | 1 | 583 | 0.0 | 798 |
| MS.gene29645.t1 | AT3G08510 | 63.790 | 591 | 171 | 7 | 1 | 588 | 1 | 551 | 0.0 | 758 |
| MS.gene29645.t1 | AT3G08510 | 63.790 | 591 | 171 | 7 | 1 | 588 | 1 | 551 | 0.0 | 758 |
| MS.gene29645.t1 | AT2G40116 | 61.781 | 539 | 190 | 6 | 56 | 588 | 84 | 612 | 0.0 | 680 |
| MS.gene29645.t1 | AT5G58700 | 57.621 | 597 | 231 | 12 | 5 | 588 | 9 | 596 | 0.0 | 675 |
| MS.gene29645.t1 | AT5G58700 | 57.621 | 597 | 231 | 12 | 5 | 588 | 9 | 596 | 0.0 | 675 |
| MS.gene29645.t1 | AT5G58700 | 63.190 | 489 | 173 | 6 | 103 | 588 | 4 | 488 | 0.0 | 632 |
| MS.gene29645.t1 | AT5G58690 | 53.367 | 594 | 244 | 10 | 5 | 588 | 7 | 577 | 0.0 | 626 |
| MS.gene29645.t1 | AT5G58690 | 53.367 | 594 | 244 | 10 | 5 | 588 | 7 | 577 | 0.0 | 626 |
| MS.gene29645.t1 | AT5G58690 | 54.609 | 575 | 228 | 10 | 24 | 588 | 7 | 558 | 0.0 | 619 |
| MS.gene29645.t1 | AT5G58670 | 52.971 | 589 | 238 | 5 | 3 | 586 | 2 | 556 | 0.0 | 613 |
| MS.gene29645.t1 | AT4G38530 | 50.596 | 587 | 252 | 7 | 4 | 586 | 3 | 555 | 0.0 | 583 |
| MS.gene29645.t1 | AT3G47290 | 38.879 | 589 | 283 | 15 | 14 | 588 | 5 | 530 | 2.56e-121 | 369 |
| MS.gene29645.t1 | AT3G47290 | 38.850 | 574 | 274 | 15 | 14 | 573 | 5 | 515 | 9.64e-117 | 358 |
| MS.gene29645.t1 | AT3G47220 | 37.500 | 592 | 288 | 16 | 13 | 588 | 5 | 530 | 5.67e-112 | 345 |
Find 135 sgRNAs with CRISPR-Local
Find 321 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAATTATAATCCCTTAAT+TGG | 0.063516 | 5.1:+64749320 | MS.gene29645:CDS |
| CTTCGTCGCGTCAGAATTTC+CGG | 0.202300 | 5.1:+64747732 | MS.gene29645:CDS |
| TTCTTAGGTGACTGTATATA+TGG | 0.217887 | 5.1:+64750167 | MS.gene29645:intron |
| CTGGAGTAAGATGGTCTTCT+AGG | 0.232724 | 5.1:-64747765 | None:intergenic |
| GCAATTAAACCTTTATATTC+TGG | 0.248822 | 5.1:-64748566 | None:intergenic |
| TCCATGAATCCACCCAATTA+AGG | 0.262517 | 5.1:-64749333 | None:intergenic |
| CCCTTAATTGGGTGGATTCA+TGG | 0.271157 | 5.1:+64749332 | MS.gene29645:CDS |
| TAGATGCTTGAGGTCTATTA+AGG | 0.282266 | 5.1:+64747702 | MS.gene29645:CDS |
| GACCAGTATATATGAAATAA+TGG | 0.291133 | 5.1:-64747179 | None:intergenic |
| TAAATACAGGTTGGGATTGC+TGG | 0.296624 | 5.1:+64750364 | MS.gene29645:intron |
| CCAAACATGCTTACCTGTTT+CGG | 0.306660 | 5.1:+64750549 | MS.gene29645:CDS |
| GCCACTTTGGCTTGAAGATC+TGG | 0.311937 | 5.1:-64747784 | None:intergenic |
| TCCCATTATTTCATATATAC+TGG | 0.316971 | 5.1:+64747177 | MS.gene29645:CDS |
| CTTACTCTTGCATAGAAATC+TGG | 0.318132 | 5.1:-64750243 | None:intergenic |
| AGTTGTATTTATCTCCCTTC+TGG | 0.319388 | 5.1:-64750609 | None:intergenic |
| TGAGTTCCCGCTTACTGTTC+CGG | 0.319955 | 5.1:+64750462 | MS.gene29645:CDS |
| TAAGTCCAGCACCCCTTCTA+TGG | 0.337792 | 5.1:-64745563 | None:intergenic |
| TTCACAGGTAACTTAGCTTT+AGG | 0.344189 | 5.1:-64750040 | None:intergenic |
| TTGGTTCCATTGTAGGGGTA+TGG | 0.346040 | 5.1:+64749908 | MS.gene29645:intron |
| CCGAAACAGGTAAGCATGTT+TGG | 0.351920 | 5.1:-64750549 | None:intergenic |
| AAGGTACTCCTTAGGTGGTT+TGG | 0.352592 | 5.1:-64748261 | None:intergenic |
| GAGTCAATGCGAGTACCTTT+TGG | 0.358619 | 5.1:-64749296 | None:intergenic |
| GATAATGTTGATGTTCTTCA+TGG | 0.363896 | 5.1:+64747321 | MS.gene29645:CDS |
| GTTTCAAGCATTTCCATAGA+AGG | 0.365341 | 5.1:+64745550 | MS.gene29645:CDS |
| TAGATGGTTACTTCAACATT+TGG | 0.368286 | 5.1:+64748155 | MS.gene29645:intron |
| CAAGGGCAATAGAGGATAAC+TGG | 0.369854 | 5.1:+64750416 | MS.gene29645:CDS |
| CCAGTCGTTAAGAGAAAATC+TGG | 0.371762 | 5.1:-64749995 | None:intergenic |
| TTAGTCTCGTACCTTGTAAT+CGG | 0.375379 | 5.1:-64748393 | None:intergenic |
| ATGTCCGAGAAAGATGATTT+TGG | 0.376271 | 5.1:+64750523 | MS.gene29645:CDS |
| CCATCTTTAGGGAAACAGTT+TGG | 0.381531 | 5.1:+64748478 | MS.gene29645:intron |
| GGTCACAATTCCTATCTAAC+CGG | 0.390542 | 5.1:+64747198 | MS.gene29645:CDS |
| TTTGTCTCAAGGTACTCCTT+AGG | 0.390852 | 5.1:-64748269 | None:intergenic |
| CTCTGCAACGCTTTCACGAT+TGG | 0.394778 | 5.1:-64747252 | None:intergenic |
| TCCTTCAAGCTTTCTGAGCC+AGG | 0.395536 | 5.1:-64748194 | None:intergenic |
| GTCACTGCTCAGCTGATTCC+CGG | 0.395646 | 5.1:-64747217 | None:intergenic |
| GCCACCAAAATCATCTTTCT+CGG | 0.396908 | 5.1:-64750527 | None:intergenic |
| TCACTGCACGGAAAGGCTTC+AGG | 0.402037 | 5.1:+64748317 | MS.gene29645:CDS |
| GAGATCCCGAGCTTCAAGTT+AGG | 0.417679 | 5.1:+64748362 | MS.gene29645:CDS |
| CCACTCCTTAGCTCCGAAAC+AGG | 0.428640 | 5.1:-64750562 | None:intergenic |
| CAGCTGATTCCCGGTTAGAT+AGG | 0.433100 | 5.1:-64747208 | None:intergenic |
| GGTTTAATTGCCATTCATGC+TGG | 0.438375 | 5.1:+64748578 | MS.gene29645:CDS |
| CTTATACGCCTCACTTTCTC+CGG | 0.442156 | 5.1:-64748641 | None:intergenic |
| CCATGAATCCACCCAATTAA+GGG | 0.444510 | 5.1:-64749332 | None:intergenic |
| TTTCGACTTCCCAGCATGAA+TGG | 0.445147 | 5.1:-64748588 | None:intergenic |
| ACCAGTATATATGAAATAAT+GGG | 0.446982 | 5.1:-64747178 | None:intergenic |
| CATACAGTGTTTGTTTATGC+TGG | 0.447970 | 5.1:+64745358 | MS.gene29645:CDS |
| AAGTGAGCAACAACTTGAAA+AGG | 0.451992 | 5.1:+64748667 | MS.gene29645:CDS |
| CAAATTATAATCCCTTAATT+GGG | 0.455647 | 5.1:+64749321 | MS.gene29645:CDS |
| TGGTTCCATTGTAGGGGTAT+GGG | 0.456000 | 5.1:+64749909 | MS.gene29645:intron |
| CTCATGGAAAAGAAATTGTC+AGG | 0.458333 | 5.1:+64748699 | MS.gene29645:CDS |
| TCTTCTAGGGTTATTACAAC+CGG | 0.465124 | 5.1:-64747751 | None:intergenic |
| ACCTGTGAAGACTACTTTGA+AGG | 0.465356 | 5.1:+64750054 | MS.gene29645:CDS |
| AAGAACATCAACATTATCCT+TGG | 0.475267 | 5.1:-64747316 | None:intergenic |
| TTAACTAACCTCGGCCACTT+TGG | 0.490233 | 5.1:-64747797 | None:intergenic |
| TCTTAGGTGACTGTATATAT+GGG | 0.491202 | 5.1:+64750168 | MS.gene29645:intron |
| ACCTGGCTCAGAAAGCTTGA+AGG | 0.492584 | 5.1:+64748193 | MS.gene29645:CDS |
| AAGAGGGTCTTGATCTCTTG+TGG | 0.493379 | 5.1:-64745414 | None:intergenic |
| AAGCGTTGCAGAGAGGTGTA+AGG | 0.494457 | 5.1:+64747262 | MS.gene29645:CDS |
| CGCATGGCTCAAAATAGATC+CGG | 0.496028 | 5.1:+64748622 | MS.gene29645:CDS |
| ACATTATCCTTGGATGCATT+AGG | 0.497632 | 5.1:-64747306 | None:intergenic |
| TTTCAAGCATTTCCATAGAA+GGG | 0.499163 | 5.1:+64745551 | MS.gene29645:CDS |
| GGATCAAAGACCTCATTATC+CGG | 0.501977 | 5.1:-64750019 | None:intergenic |
| AGGATAACTGGCTGCCTACA+TGG | 0.502775 | 5.1:+64750428 | MS.gene29645:CDS |
| CATTTCCATAGAAGGGGTGC+TGG | 0.503533 | 5.1:+64745558 | MS.gene29645:CDS |
| GCTTACCTGTTTCGGAGCTA+AGG | 0.504467 | 5.1:+64750557 | MS.gene29645:CDS |
| GTGGATTCATGGAGCTCAAA+TGG | 0.506219 | 5.1:+64749343 | MS.gene29645:CDS |
| CGTGAACTTCTATACGAAGA+AGG | 0.506720 | 5.1:-64750492 | None:intergenic |
| AACATAACCACACCCTCCAT+TGG | 0.506899 | 5.1:-64749966 | None:intergenic |
| ATTATAATCCCTTAATTGGG+TGG | 0.507171 | 5.1:+64749324 | MS.gene29645:CDS |
| CCTTGAGACAAAAGAAGTAA+AGG | 0.507809 | 5.1:+64748280 | MS.gene29645:CDS |
| AGGTTTGTTATCCGATTACA+AGG | 0.508087 | 5.1:+64748382 | MS.gene29645:CDS |
| ACAAACCTAACTTGAAGCTC+GGG | 0.512099 | 5.1:-64748367 | None:intergenic |
| ACCTTCAAAGTAGTCTTCAC+AGG | 0.513097 | 5.1:-64750055 | None:intergenic |
| ATTCTGAGGGTGTTTCCAAA+AGG | 0.513881 | 5.1:+64749281 | MS.gene29645:CDS |
| GTCTCAAGGTACTCCTTAGG+TGG | 0.517428 | 5.1:-64748266 | None:intergenic |
| AGGTGTAAGGGTAATTGAGT+TGG | 0.519469 | 5.1:+64747275 | MS.gene29645:CDS |
| GAAAAGGCTGCTATAACTCA+TGG | 0.519626 | 5.1:+64748683 | MS.gene29645:CDS |
| AATGGTTGCATTCAACATGC+AGG | 0.520279 | 5.1:+64749361 | MS.gene29645:CDS |
| ATACGAAGAAGGGCTAGTTC+CGG | 0.521787 | 5.1:-64750481 | None:intergenic |
| CACGTAGCTCCAGAATATAA+AGG | 0.523016 | 5.1:+64748557 | MS.gene29645:CDS |
| TTCAGGCGACGATGAAGCGT+GGG | 0.524653 | 5.1:+64748334 | MS.gene29645:CDS |
| AACAAACCTAACTTGAAGCT+CGG | 0.526863 | 5.1:-64748368 | None:intergenic |
| CATGGAATGTTTAGAGCCAA+TGG | 0.529913 | 5.1:+64749950 | MS.gene29645:CDS |
| AGGGGTATGGGAGATCACTT+TGG | 0.529986 | 5.1:+64749921 | MS.gene29645:intron |
| TTCTGAGTATTGTTCAAAGA+GGG | 0.538272 | 5.1:-64745430 | None:intergenic |
| GTTTAATTGCCATTCATGCT+GGG | 0.544657 | 5.1:+64748579 | MS.gene29645:CDS |
| TATATCAACCAAACCACCTA+AGG | 0.545265 | 5.1:+64748253 | MS.gene29645:CDS |
| TTTAGAGCCAATGGAGGGTG+TGG | 0.547065 | 5.1:+64749959 | MS.gene29645:CDS |
| TCTTCAAGCCAAAGTGGCCG+AGG | 0.552882 | 5.1:+64747789 | MS.gene29645:CDS |
| AGTTTCTCTGCATAGCCAGA+AGG | 0.553914 | 5.1:+64750594 | MS.gene29645:CDS |
| GTTTCTCTGCATAGCCAGAA+GGG | 0.554251 | 5.1:+64750595 | MS.gene29645:CDS |
| TGGAGCTCATTAGATGCTTG+AGG | 0.557147 | 5.1:+64747692 | MS.gene29645:CDS |
| AAGCATCTAATGAGCTCCAC+AGG | 0.560130 | 5.1:-64747688 | None:intergenic |
| ACAAAGGTAATGTCATATCA+TGG | 0.560404 | 5.1:-64747155 | None:intergenic |
| AACGACTGGTCCGGATAATG+AGG | 0.561220 | 5.1:+64750009 | MS.gene29645:CDS |
| ATGTTGATGTTCTTCATGGA+AGG | 0.566931 | 5.1:+64747325 | MS.gene29645:CDS |
| CTTGTGGCCTAATGCATCCA+AGG | 0.569316 | 5.1:+64747299 | MS.gene29645:CDS |
| TTCAAGCATTTCCATAGAAG+GGG | 0.569805 | 5.1:+64745552 | MS.gene29645:CDS |
| TGGAGTAAGATGGTCTTCTA+GGG | 0.570432 | 5.1:-64747764 | None:intergenic |
| GGATGATTCACTGCACGGAA+AGG | 0.571504 | 5.1:+64748310 | MS.gene29645:CDS |
| CTAGTTCCGGAACAGTAAGC+GGG | 0.572544 | 5.1:-64750468 | None:intergenic |
| TATATGAAATAATGGGACAA+AGG | 0.576354 | 5.1:-64747171 | None:intergenic |
| TTTCTGAGTATTGTTCAAAG+AGG | 0.578422 | 5.1:-64745431 | None:intergenic |
| CTTCAGGCGACGATGAAGCG+TGG | 0.578988 | 5.1:+64748333 | MS.gene29645:CDS |
| CGGAAATTCTGACGCGACGA+AGG | 0.580991 | 5.1:-64747731 | None:intergenic |
| CTTGAAGATCTGGAGTAAGA+TGG | 0.581839 | 5.1:-64747774 | None:intergenic |
| GGAGACATACTATTTGTACC+TGG | 0.581909 | 5.1:+64748176 | MS.gene29645:CDS |
| TCCAGATCTTCAAGCCAAAG+TGG | 0.589376 | 5.1:+64747783 | MS.gene29645:CDS |
| AGATCACTTTGGCTGATGCA+TGG | 0.591647 | 5.1:+64749932 | MS.gene29645:CDS |
| GTGACTGTATATATGGGAGA+AGG | 0.593969 | 5.1:+64750174 | MS.gene29645:CDS |
| CTGTATATATGGGAGAAGGA+TGG | 0.596370 | 5.1:+64750178 | MS.gene29645:CDS |
| TTACTCAGAAGAATATTCTG+AGG | 0.598350 | 5.1:+64749267 | MS.gene29645:CDS |
| AAATAGATCCGGAGAAAGTG+AGG | 0.601407 | 5.1:+64748633 | MS.gene29645:CDS |
| TCAAATACCTCGTTCCATGT+AGG | 0.605540 | 5.1:-64750442 | None:intergenic |
| ATTCATGCTGGGAAGTCGAA+AGG | 0.606432 | 5.1:+64748590 | MS.gene29645:CDS |
| TACTCAGAAGAATATTCTGA+GGG | 0.607678 | 5.1:+64749268 | MS.gene29645:CDS |
| GCTAGTTCCGGAACAGTAAG+CGG | 0.611031 | 5.1:-64750469 | None:intergenic |
| AAAGAGGATGATTCACTGCA+CGG | 0.615717 | 5.1:+64748305 | MS.gene29645:CDS |
| GGGTAATTGAGTTGGACTTG+TGG | 0.619450 | 5.1:+64747283 | MS.gene29645:CDS |
| AGCGTTGCAGAGAGGTGTAA+GGG | 0.624722 | 5.1:+64747263 | MS.gene29645:CDS |
| CCTGTTTCGGAGCTAAGGAG+TGG | 0.625863 | 5.1:+64750562 | MS.gene29645:CDS |
| GTGAACTTCTATACGAAGAA+GGG | 0.630679 | 5.1:-64750491 | None:intergenic |
| CGAAAGGAGGAATAGACGCA+TGG | 0.636517 | 5.1:+64748606 | MS.gene29645:CDS |
| TCAGGCGACGATGAAGCGTG+GGG | 0.637108 | 5.1:+64748335 | MS.gene29645:CDS |
| TAGGACATTGACTACTCCTG+TGG | 0.639924 | 5.1:+64747672 | MS.gene29645:intron |
| GTCACAATTCCTATCTAACC+GGG | 0.642865 | 5.1:+64747199 | MS.gene29645:CDS |
| CATGCTGGGAAGTCGAAAGG+AGG | 0.643715 | 5.1:+64748593 | MS.gene29645:CDS |
| GGAATGTTTAGAGCCAATGG+AGG | 0.657335 | 5.1:+64749953 | MS.gene29645:CDS |
| GAATGTTTAGAGCCAATGGA+GGG | 0.667916 | 5.1:+64749954 | MS.gene29645:CDS |
| CTTTATATTCTGGAGCTACG+TGG | 0.670500 | 5.1:-64748556 | None:intergenic |
| ACTCTTGCATAGAAATCTGG+AGG | 0.672637 | 5.1:-64750240 | None:intergenic |
| CAATTGGAGATAAAAGAGCA+AGG | 0.689339 | 5.1:-64745626 | None:intergenic |
| CTGGCTGCCTACATGGAACG+AGG | 0.693778 | 5.1:+64750435 | MS.gene29645:CDS |
| CAGGCGACGATGAAGCGTGG+GGG | 0.697880 | 5.1:+64748336 | MS.gene29645:CDS |
| ATCGTGAAAGCGTTGCAGAG+AGG | 0.719532 | 5.1:+64747255 | MS.gene29645:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTCATTATATTTTGTTTAA+GGG | + | chr5.1:64746482-64746501 | MS.gene29645:intron | 10.0% |
| !!! | TGCATTTTTTTTAATTATTA+AGG | - | chr5.1:64746571-64746590 | None:intergenic | 10.0% |
| !! | AATATTAAATTAGATACACT+TGG | - | chr5.1:64750110-64750129 | None:intergenic | 15.0% |
| !! | ATAGTATAATGAAAAAAACA+AGG | + | chr5.1:64750398-64750417 | MS.gene29645:CDS | 15.0% |
| !! | TAGTATAATGAAAAAAACAA+GGG | + | chr5.1:64750399-64750418 | MS.gene29645:CDS | 15.0% |
| !!! | ATTATGTCTAAATTTTTAGA+TGG | + | chr5.1:64748139-64748158 | MS.gene29645:intron | 15.0% |
| !!! | ATTTTCAAGAAAATAATTTC+TGG | - | chr5.1:64747619-64747638 | None:intergenic | 15.0% |
| !!! | CACTTCAATTAATAATTTTA+GGG | + | chr5.1:64748430-64748449 | MS.gene29645:intron | 15.0% |
| !!! | CATTCATTATATTTTGTTTA+AGG | + | chr5.1:64746481-64746500 | MS.gene29645:intron | 15.0% |
| !!! | GATAGTATTTTTCTAATATT+CGG | + | chr5.1:64749004-64749023 | MS.gene29645:intron | 15.0% |
| !!! | GTTTTTTCTGTTTTTTATTT+CGG | + | chr5.1:64746650-64746669 | MS.gene29645:intron | 15.0% |
| !!! | TAATTTTGACGAAATTTAAA+AGG | + | chr5.1:64748975-64748994 | MS.gene29645:intron | 15.0% |
| !!! | TGATTTGATAATTTAAATAC+AGG | + | chr5.1:64750351-64750370 | MS.gene29645:intron | 15.0% |
| !!! | TTTACATTTTTTTAATCTCT+AGG | + | chr5.1:64747653-64747672 | MS.gene29645:intron | 15.0% |
| !!! | TTTTTTAATTATTAAGGCAA+TGG | - | chr5.1:64746565-64746584 | None:intergenic | 15.0% |
| !!! | TTTTTTCTGTTTTTTATTTC+GGG | + | chr5.1:64746651-64746670 | MS.gene29645:intron | 15.0% |
| !! | AAATTGTTTATAAGCTATTC+TGG | - | chr5.1:64750316-64750335 | None:intergenic | 20.0% |
| !! | AATTGAAGTGCAAATAAAAT+TGG | - | chr5.1:64748420-64748439 | None:intergenic | 20.0% |
| !! | ACCAGTATATATGAAATAAT+GGG | - | chr5.1:64747181-64747200 | None:intergenic | 20.0% |
| !! | ATCATTATCAAGAAAATAGA+AGG | - | chr5.1:64747395-64747414 | None:intergenic | 20.0% |
| !! | CAAATTATAATCCCTTAATT+GGG | + | chr5.1:64749321-64749340 | MS.gene29645:CDS | 20.0% |
| !! | CATATAAATTTCCATCTTTA+GGG | + | chr5.1:64748467-64748486 | MS.gene29645:intron | 20.0% |
| !! | CATCTAAATTCTTTATATTG+TGG | - | chr5.1:64746729-64746748 | None:intergenic | 20.0% |
| !! | CATTCATTTCAAACATAAAA+AGG | - | chr5.1:64748751-64748770 | None:intergenic | 20.0% |
| !! | CTAAACAAAATTGATGTATT+TGG | - | chr5.1:64746253-64746272 | None:intergenic | 20.0% |
| !! | GAAGTATGATATTACTATAT+TGG | - | chr5.1:64750142-64750161 | None:intergenic | 20.0% |
| !! | GATGTATTTAATGTAGAATT+CGG | - | chr5.1:64745993-64746012 | None:intergenic | 20.0% |
| !! | GATGTATTTGATTCAAAATT+TGG | - | chr5.1:64746360-64746379 | None:intergenic | 20.0% |
| !! | TATATGCTAAGTATATACTT+TGG | + | chr5.1:64746421-64746440 | MS.gene29645:intron | 20.0% |
| !! | TCAAATTATAATCCCTTAAT+TGG | + | chr5.1:64749320-64749339 | MS.gene29645:CDS | 20.0% |
| !! | TGATAATTTAAATACAGGTT+GGG | + | chr5.1:64750356-64750375 | MS.gene29645:intron | 20.0% |
| !!! | AAATAATTTCTGGATACAAT+TGG | - | chr5.1:64747609-64747628 | None:intergenic | 20.0% |
| !!! | AAGTACATATTGTTTTTTAG+GGG | - | chr5.1:64746456-64746475 | None:intergenic | 20.0% |
| !!! | ACAAGTACATATTGTTTTTT+AGG | - | chr5.1:64746458-64746477 | None:intergenic | 20.0% |
| !!! | AGATTTTATCATATTAGATG+TGG | - | chr5.1:64749842-64749861 | None:intergenic | 20.0% |
| !!! | ATTGAAAATATTTTTCTGTG+TGG | + | chr5.1:64747836-64747855 | MS.gene29645:intron | 20.0% |
| !!! | ATTTTTATTTACCTGATTGT+TGG | + | chr5.1:64749232-64749251 | MS.gene29645:intron | 20.0% |
| !!! | CAAGTACATATTGTTTTTTA+GGG | - | chr5.1:64746457-64746476 | None:intergenic | 20.0% |
| !!! | CTATTTTCTCAAAATATTAC+TGG | - | chr5.1:64749565-64749584 | None:intergenic | 20.0% |
| !!! | GATTTTATCATATTAGATGT+GGG | - | chr5.1:64749841-64749860 | None:intergenic | 20.0% |
| !!! | GCACTTCAATTAATAATTTT+AGG | + | chr5.1:64748429-64748448 | MS.gene29645:intron | 20.0% |
| !!! | TATCTAATAGGAAAATGTTT+TGG | + | chr5.1:64749146-64749165 | MS.gene29645:intron | 20.0% |
| !!! | TCTATTATTGATAATGATGT+TGG | + | chr5.1:64749859-64749878 | MS.gene29645:intron | 20.0% |
| !!! | TTATTGATTTTTTTTGTACG+TGG | - | chr5.1:64748861-64748880 | None:intergenic | 20.0% |
| !!! | TTGATAATTTAAATACAGGT+TGG | + | chr5.1:64750355-64750374 | MS.gene29645:intron | 20.0% |
| !!! | TTGTCTTTTATTGTCAATTT+AGG | + | chr5.1:64745850-64745869 | MS.gene29645:intron | 20.0% |
| !!! | TTTCAATTAAGAATCTTTTG+AGG | - | chr5.1:64745479-64745498 | None:intergenic | 20.0% |
| !!! | TTTTCATTATACTATCACTA+GGG | - | chr5.1:64750393-64750412 | None:intergenic | 20.0% |
| !!! | TTTTTCATTATACTATCACT+AGG | - | chr5.1:64750394-64750413 | None:intergenic | 20.0% |
| !!! | TTTTTCTGTTTTTTATTTCG+GGG | + | chr5.1:64746652-64746671 | MS.gene29645:intron | 20.0% |
| !!! | TTTTTGCTTATATTTTGCAA+TGG | + | chr5.1:64746396-64746415 | MS.gene29645:intron | 20.0% |
| ! | AAAAGAAGTAAAGGAAAAAG+AGG | + | chr5.1:64748289-64748308 | MS.gene29645:CDS | 25.0% |
| ! | AAAATGAAAAAACACTGAAG+AGG | - | chr5.1:64749399-64749418 | None:intergenic | 25.0% |
| ! | AAAGTAGTAGAATTTCAATC+AGG | - | chr5.1:64749049-64749068 | None:intergenic | 25.0% |
| ! | AAATGAAAAAACACTGAAGA+GGG | - | chr5.1:64749398-64749417 | None:intergenic | 25.0% |
| ! | AAGTAGTAGAATTTCAATCA+GGG | - | chr5.1:64749048-64749067 | None:intergenic | 25.0% |
| ! | AATAGAAAATCATGATTGTC+AGG | + | chr5.1:64747535-64747554 | MS.gene29645:intron | 25.0% |
| ! | ACAAAAACTGAGAAAATGAA+AGG | - | chr5.1:64745816-64745835 | None:intergenic | 25.0% |
| ! | ATCAACTTGATCTATCTAAT+AGG | + | chr5.1:64749134-64749153 | MS.gene29645:intron | 25.0% |
| ! | ATTATAAATCCTGCTCAAAA+AGG | - | chr5.1:64749717-64749736 | None:intergenic | 25.0% |
| ! | CTCATAAATCATCATTACTA+AGG | + | chr5.1:64747047-64747066 | MS.gene29645:intron | 25.0% |
| ! | GACCAGTATATATGAAATAA+TGG | - | chr5.1:64747182-64747201 | None:intergenic | 25.0% |
| ! | GCAATTAAACCTTTATATTC+TGG | - | chr5.1:64748569-64748588 | None:intergenic | 25.0% |
| ! | GCATATAAATTTCCATCTTT+AGG | + | chr5.1:64748466-64748485 | MS.gene29645:intron | 25.0% |
| ! | GGATATCAAATAGGAATTAT+AGG | - | chr5.1:64748917-64748936 | None:intergenic | 25.0% |
| ! | GGTTGAATTGTACATAATTA+AGG | - | chr5.1:64746973-64746992 | None:intergenic | 25.0% |
| ! | GTAAAAATGATATGCTGATA+TGG | - | chr5.1:64747582-64747601 | None:intergenic | 25.0% |
| ! | GTATTGTATCACATTTATTG+TGG | + | chr5.1:64749088-64749107 | MS.gene29645:intron | 25.0% |
| ! | TAAATGTGATACAATACAAC+AGG | - | chr5.1:64749085-64749104 | None:intergenic | 25.0% |
| ! | TAGCATAATATCAAAGTTTG+CGG | + | chr5.1:64746805-64746824 | MS.gene29645:intron | 25.0% |
| ! | TAGTAATGATGATTTATGAG+CGG | - | chr5.1:64747047-64747066 | None:intergenic | 25.0% |
| ! | TAGTTAACTGAAGTTGTATT+GGG | + | chr5.1:64747813-64747832 | MS.gene29645:intron | 25.0% |
| ! | TATGGAAATAAGCTGAAAAA+AGG | - | chr5.1:64750287-64750306 | None:intergenic | 25.0% |
| ! | TCAATAAACGTTGATGTATT+TGG | + | chr5.1:64746214-64746233 | MS.gene29645:intron | 25.0% |
| ! | TCCCATTATTTCATATATAC+TGG | + | chr5.1:64747177-64747196 | MS.gene29645:CDS | 25.0% |
| ! | TTAGTTAACTGAAGTTGTAT+TGG | + | chr5.1:64747812-64747831 | MS.gene29645:intron | 25.0% |
| ! | TTCAATTATGTTGTTCTTTG+TGG | + | chr5.1:64745754-64745773 | MS.gene29645:intron | 25.0% |
| ! | TTGACGAAATTTAAAAGGAA+CGG | + | chr5.1:64748980-64748999 | MS.gene29645:intron | 25.0% |
| !! | AGTCACTTTCTTTAAGAAAT+GGG | + | chr5.1:64746621-64746640 | MS.gene29645:intron | 25.0% |
| !! | CTTTTGCTAATATTTTGCAA+CGG | + | chr5.1:64746029-64746048 | MS.gene29645:intron | 25.0% |
| !! | GCTACAAATTCTAGTATTTT+TGG | + | chr5.1:64747442-64747461 | MS.gene29645:intron | 25.0% |
| !! | TAAAATATTTTGTCAGCACT+TGG | - | chr5.1:64749478-64749497 | None:intergenic | 25.0% |
| !! | TAAAGAATATTTTCATGACG+AGG | + | chr5.1:64748502-64748521 | MS.gene29645:CDS | 25.0% |
| !! | TATATGAAATAATGGGACAA+AGG | - | chr5.1:64747174-64747193 | None:intergenic | 25.0% |
| !! | TTTTTGCTTACATTTTGCAA+CGG | + | chr5.1:64746277-64746296 | MS.gene29645:intron | 25.0% |
| !!! | AAAATGAAAGGCATTAAACA+AGG | - | chr5.1:64745804-64745823 | None:intergenic | 25.0% |
| !!! | ATATACCTAGTTCTAAATTG+TGG | + | chr5.1:64746684-64746703 | MS.gene29645:intron | 25.0% |
| !!! | CGGTTTGTTAATTAAAGTTA+TGG | - | chr5.1:64747027-64747046 | None:intergenic | 25.0% |
| !!! | TATATTTTGTTTAAGGGTGA+AGG | + | chr5.1:64746488-64746507 | MS.gene29645:intron | 25.0% |
| !!! | TATCCCATAGTTCTAAATTA+TGG | - | chr5.1:64746842-64746861 | None:intergenic | 25.0% |
| !!! | TATTAGATAGATCAAGTTGA+TGG | - | chr5.1:64749135-64749154 | None:intergenic | 25.0% |
| !!! | TGAAATTCTACTACTTTTGT+TGG | + | chr5.1:64749052-64749071 | MS.gene29645:intron | 25.0% |
| !!! | TTCTTTAAGAAATGGGATTT+TGG | + | chr5.1:64746628-64746647 | MS.gene29645:intron | 25.0% |
| !!! | TTTTTTTTACTTACCCCAAT+TGG | - | chr5.1:64745645-64745664 | None:intergenic | 25.0% |
| AAATGCGAAAAAAAATGCAG+CGG | - | chr5.1:64746785-64746804 | None:intergenic | 30.0% | |
| AAATTAGATACACTTGGATG+AGG | - | chr5.1:64750104-64750123 | None:intergenic | 30.0% | |
| AACCTTAAAACGCCAATTAA+CGG | - | chr5.1:64748834-64748853 | None:intergenic | 30.0% | |
| AAGAACATCAACATTATCCT+TGG | - | chr5.1:64747319-64747338 | None:intergenic | 30.0% | |
| ACAAAGGTAATGTCATATCA+TGG | - | chr5.1:64747158-64747177 | None:intergenic | 30.0% | |
| ACATGGTGAACTATATGTAT+TGG | + | chr5.1:64746514-64746533 | MS.gene29645:intron | 30.0% | |
| AGGCGATTAAAGTATAAAAG+TGG | - | chr5.1:64747375-64747394 | None:intergenic | 30.0% | |
| ATATAATCAAAAGTGAGCCT+AGG | + | chr5.1:64746075-64746094 | MS.gene29645:intron | 30.0% | |
| ATCATACTTCACTTGTTCTT+AGG | + | chr5.1:64750152-64750171 | MS.gene29645:intron | 30.0% | |
| ATTATAATCCCTTAATTGGG+TGG | + | chr5.1:64749324-64749343 | MS.gene29645:CDS | 30.0% | |
| CAAAATACATCAACTTTCCT+AGG | - | chr5.1:64746095-64746114 | None:intergenic | 30.0% | |
| CAGAGTGAAATATGTGAAAT+GGG | - | chr5.1:64748938-64748957 | None:intergenic | 30.0% | |
| CTTGTACTACATAGTAATTC+AGG | + | chr5.1:64745902-64745921 | MS.gene29645:intron | 30.0% | |
| GATAAGCTAAAAACAGCTTA+TGG | + | chr5.1:64747999-64748018 | MS.gene29645:intron | 30.0% | |
| GATAATGTTGATGTTCTTCA+TGG | + | chr5.1:64747321-64747340 | MS.gene29645:CDS | 30.0% | |
| GATACAATACAACAGGAAAA+TGG | - | chr5.1:64749078-64749097 | None:intergenic | 30.0% | |
| TACTCAGAAGAATATTCTGA+GGG | + | chr5.1:64749268-64749287 | MS.gene29645:CDS | 30.0% | |
| TAGATGGTTACTTCAACATT+TGG | + | chr5.1:64748155-64748174 | MS.gene29645:intron | 30.0% | |
| TCAAATAAGTCAATCTTGAC+AGG | + | chr5.1:64748093-64748112 | MS.gene29645:intron | 30.0% | |
| TCTTAGGTGACTGTATATAT+GGG | + | chr5.1:64750168-64750187 | MS.gene29645:intron | 30.0% | |
| TGTGAAATGGGATATCAAAT+AGG | - | chr5.1:64748926-64748945 | None:intergenic | 30.0% | |
| TTACTCAGAAGAATATTCTG+AGG | + | chr5.1:64749267-64749286 | MS.gene29645:CDS | 30.0% | |
| TTCTTAGGTGACTGTATATA+TGG | + | chr5.1:64750167-64750186 | MS.gene29645:intron | 30.0% | |
| TTGCAACAAAATTGCAATTG+CGG | + | chr5.1:64746753-64746772 | MS.gene29645:intron | 30.0% | |
| TTTCAAGCATTTCCATAGAA+GGG | + | chr5.1:64745551-64745570 | MS.gene29645:CDS | 30.0% | |
| ! | CAGTCACTTTCTTTAAGAAA+TGG | + | chr5.1:64746620-64746639 | MS.gene29645:intron | 30.0% |
| ! | CGACCATAATTTAGAACTAT+GGG | + | chr5.1:64746836-64746855 | MS.gene29645:intron | 30.0% |
| ! | GATGTATTTGGTTCAACATT+TGG | - | chr5.1:64746241-64746260 | None:intergenic | 30.0% |
| ! | TTCTGAGTATTGTTCAAAGA+GGG | - | chr5.1:64745433-64745452 | None:intergenic | 30.0% |
| ! | TTGCTCTTTTATCTCCAATT+GGG | + | chr5.1:64745628-64745647 | MS.gene29645:CDS | 30.0% |
| ! | TTTCTGAGTATTGTTCAAAG+AGG | - | chr5.1:64745434-64745453 | None:intergenic | 30.0% |
| !!! | AAGAATCTTTTGAGGTTTGA+AGG | - | chr5.1:64745471-64745490 | None:intergenic | 30.0% |
| !!! | AAGTTAGTTTTCATTGTGCT+TGG | + | chr5.1:64749889-64749908 | MS.gene29645:intron | 30.0% |
| !!! | ATCCTCTTTTTAAGTGATTC+AGG | - | chr5.1:64748230-64748249 | None:intergenic | 30.0% |
| !!! | TGTGTTTTTTGTTGTATTCC+AGG | + | chr5.1:64747128-64747147 | MS.gene29645:intron | 30.0% |
| !!! | TTTTTAAGTGATTCAGGAGA+AGG | - | chr5.1:64748224-64748243 | None:intergenic | 30.0% |
| AACAAACCTAACTTGAAGCT+CGG | - | chr5.1:64748371-64748390 | None:intergenic | 35.0% | |
| AAGTGAGCAACAACTTGAAA+AGG | + | chr5.1:64748667-64748686 | MS.gene29645:CDS | 35.0% | |
| ACATTATCCTTGGATGCATT+AGG | - | chr5.1:64747309-64747328 | None:intergenic | 35.0% | |
| AGTTGTATTTATCTCCCTTC+TGG | - | chr5.1:64750612-64750631 | None:intergenic | 35.0% | |
| ATAAGCACTTAGACACTGTT+TGG | - | chr5.1:64748059-64748078 | None:intergenic | 35.0% | |
| ATATATGTTGAGCAACACCA+TGG | - | chr5.1:64748799-64748818 | None:intergenic | 35.0% | |
| ATGTGAGGTTAAGTTAACAC+TGG | + | chr5.1:64749793-64749812 | MS.gene29645:intron | 35.0% | |
| ATGTTGATGTTCTTCATGGA+AGG | + | chr5.1:64747325-64747344 | MS.gene29645:CDS | 35.0% | |
| ATTACTTCAACGAGGGTTTA+AGG | + | chr5.1:64747001-64747020 | MS.gene29645:intron | 35.0% | |
| CAACTTCAGTTAACTAACCT+CGG | - | chr5.1:64747809-64747828 | None:intergenic | 35.0% | |
| CAATTGGAGATAAAAGAGCA+AGG | - | chr5.1:64745629-64745648 | None:intergenic | 35.0% | |
| CACTCTGCAATAAATAGTCA+GGG | + | chr5.1:64748951-64748970 | MS.gene29645:intron | 35.0% | |
| CATACAGTGTTTGTTTATGC+TGG | + | chr5.1:64745358-64745377 | MS.gene29645:CDS | 35.0% | |
| CCTTGAGACAAAAGAAGTAA+AGG | + | chr5.1:64748280-64748299 | MS.gene29645:CDS | 35.0% | |
| CTCATGGAAAAGAAATTGTC+AGG | + | chr5.1:64748699-64748718 | MS.gene29645:CDS | 35.0% | |
| CTCCTGAATCACTTAAAAAG+AGG | + | chr5.1:64748225-64748244 | MS.gene29645:CDS | 35.0% | |
| CTTACTCTTGCATAGAAATC+TGG | - | chr5.1:64750246-64750265 | None:intergenic | 35.0% | |
| GAAAAAAACAAGGGCAATAG+AGG | + | chr5.1:64750408-64750427 | MS.gene29645:CDS | 35.0% | |
| GAACTATGGGATATACCATA+TGG | + | chr5.1:64746849-64746868 | MS.gene29645:intron | 35.0% | |
| GCAGAGTGAAATATGTGAAA+TGG | - | chr5.1:64748939-64748958 | None:intergenic | 35.0% | |
| GTGAACTTCTATACGAAGAA+GGG | - | chr5.1:64750494-64750513 | None:intergenic | 35.0% | |
| GTGATAGTTGAAATATGAGC+CGG | + | chr5.1:64749690-64749709 | MS.gene29645:intron | 35.0% | |
| GTTGACCAAAAAACATGACA+AGG | - | chr5.1:64745713-64745732 | None:intergenic | 35.0% | |
| GTTTAATTGCCATTCATGCT+GGG | + | chr5.1:64748579-64748598 | MS.gene29645:CDS | 35.0% | |
| GTTTCAAGCATTTCCATAGA+AGG | + | chr5.1:64745550-64745569 | MS.gene29645:CDS | 35.0% | |
| TAGATGCTTGAGGTCTATTA+AGG | + | chr5.1:64747702-64747721 | MS.gene29645:CDS | 35.0% | |
| TATACCATATGGCATCACAT+TGG | + | chr5.1:64746860-64746879 | MS.gene29645:intron | 35.0% | |
| TATATCAACCAAACCACCTA+AGG | + | chr5.1:64748253-64748272 | MS.gene29645:CDS | 35.0% | |
| TATATGTTGAGCAACACCAT+GGG | - | chr5.1:64748798-64748817 | None:intergenic | 35.0% | |
| TATGTACAATTCAACCCTCA+AGG | + | chr5.1:64746977-64746996 | MS.gene29645:intron | 35.0% | |
| TCACTCTGCAATAAATAGTC+AGG | + | chr5.1:64748950-64748969 | MS.gene29645:intron | 35.0% | |
| TCAGGGAAATAGAATACAGA+AGG | - | chr5.1:64749031-64749050 | None:intergenic | 35.0% | |
| TCGTTGAAGTAATACCTTGA+GGG | - | chr5.1:64746994-64747013 | None:intergenic | 35.0% | |
| TGGTCAACTGAATCTGTATT+TGG | + | chr5.1:64745725-64745744 | MS.gene29645:intron | 35.0% | |
| TTAGTCTCGTACCTTGTAAT+CGG | - | chr5.1:64748396-64748415 | None:intergenic | 35.0% | |
| TTATATTGTGGCTGCAATTG+TGG | - | chr5.1:64746717-64746736 | None:intergenic | 35.0% | |
| TTCAAGCATTTCCATAGAAG+GGG | + | chr5.1:64745552-64745571 | MS.gene29645:CDS | 35.0% | |
| TTCTTACTACCTCCGTTAAT+TGG | + | chr5.1:64748819-64748838 | MS.gene29645:intron | 35.0% | |
| TTTAAGGGTGAAGGTTAACA+TGG | + | chr5.1:64746497-64746516 | MS.gene29645:intron | 35.0% | |
| ! | ATGTCCGAGAAAGATGATTT+TGG | + | chr5.1:64750523-64750542 | MS.gene29645:CDS | 35.0% |
| ! | ATTTTTGCTGCAATTCAACC+AGG | - | chr5.1:64747422-64747441 | None:intergenic | 35.0% |
| ! | CCTTTACTTCTTTTGTCTCA+AGG | - | chr5.1:64748283-64748302 | None:intergenic | 35.0% |
| ! | CTTGCTCTTTTATCTCCAAT+TGG | + | chr5.1:64745627-64745646 | MS.gene29645:CDS | 35.0% |
| ! | GAAGACTACTTTGAAGGTAA+GGG | + | chr5.1:64750060-64750079 | MS.gene29645:intron | 35.0% |
| ! | GCGACCATAATTTAGAACTA+TGG | + | chr5.1:64746835-64746854 | MS.gene29645:intron | 35.0% |
| ! | GTTCACACTTTACACACTTT+TGG | + | chr5.1:64746917-64746936 | MS.gene29645:intron | 35.0% |
| ! | TCAAGGTATTACTTCAACGA+GGG | + | chr5.1:64746994-64747013 | MS.gene29645:intron | 35.0% |
| ! | TGAAGACTACTTTGAAGGTA+AGG | + | chr5.1:64750059-64750078 | MS.gene29645:intron | 35.0% |
| ! | TGCTCTTTTATCTCCAATTG+GGG | + | chr5.1:64745629-64745648 | MS.gene29645:CDS | 35.0% |
| ! | TTCACAGGTAACTTAGCTTT+AGG | - | chr5.1:64750043-64750062 | None:intergenic | 35.0% |
| !! | AGGTTTGTTATCCGATTACA+AGG | + | chr5.1:64748382-64748401 | MS.gene29645:CDS | 35.0% |
| !! | ATAGTAGTCTTATGAAGCAC+TGG | + | chr5.1:64749505-64749524 | MS.gene29645:intron | 35.0% |
| !! | TCTTCTAGGGTTATTACAAC+CGG | - | chr5.1:64747754-64747773 | None:intergenic | 35.0% |
| !! | TTCTTGATAATGATGTCACC+TGG | + | chr5.1:64747401-64747420 | MS.gene29645:intron | 35.0% |
| !!! | CTAGTATTTTTGGTGCAATC+TGG | + | chr5.1:64747452-64747471 | MS.gene29645:intron | 35.0% |
| !!! | CTGAACCTTGTCATGTTTTT+TGG | + | chr5.1:64745705-64745724 | MS.gene29645:intron | 35.0% |
| !!! | GCTGTTTTTATAACCTAACC+TGG | + | chr5.1:64747964-64747983 | MS.gene29645:intron | 35.0% |
| AAAGAGGATGATTCACTGCA+CGG | + | chr5.1:64748305-64748324 | MS.gene29645:CDS | 40.0% | |
| AAAGCCAATGTGATGCCATA+TGG | - | chr5.1:64746867-64746886 | None:intergenic | 40.0% | |
| AAATAGATCCGGAGAAAGTG+AGG | + | chr5.1:64748633-64748652 | MS.gene29645:CDS | 40.0% | |
| AAATCCTGCTCAAAAAGGAC+CGG | - | chr5.1:64749712-64749731 | None:intergenic | 40.0% | |
| AACCTAACCTGGAGAACTAA+TGG | + | chr5.1:64747975-64747994 | MS.gene29645:intron | 40.0% | |
| AATGGTTGCATTCAACATGC+AGG | + | chr5.1:64749361-64749380 | MS.gene29645:CDS | 40.0% | |
| ACAAACCTAACTTGAAGCTC+GGG | - | chr5.1:64748370-64748389 | None:intergenic | 40.0% | |
| ACACTGTTTGGAAGAGCTTA+TGG | - | chr5.1:64748047-64748066 | None:intergenic | 40.0% | |
| ACCTGTGAAGACTACTTTGA+AGG | + | chr5.1:64750054-64750073 | MS.gene29645:CDS | 40.0% | |
| ACCTTCAAAGTAGTCTTCAC+AGG | - | chr5.1:64750058-64750077 | None:intergenic | 40.0% | |
| ACTCTTGCATAGAAATCTGG+AGG | - | chr5.1:64750243-64750262 | None:intergenic | 40.0% | |
| AGGTGTAAGGGTAATTGAGT+TGG | + | chr5.1:64747275-64747294 | MS.gene29645:CDS | 40.0% | |
| ATTGTGCTTGGTTCCATTGT+AGG | + | chr5.1:64749901-64749920 | MS.gene29645:intron | 40.0% | |
| CACGTAGCTCCAGAATATAA+AGG | + | chr5.1:64748557-64748576 | MS.gene29645:CDS | 40.0% | |
| CCAAACATGCTTACCTGTTT+CGG | + | chr5.1:64750549-64750568 | MS.gene29645:CDS | 40.0% | |
| CCAAACTGTTTCCCTAAAGA+TGG | - | chr5.1:64748481-64748500 | None:intergenic | 40.0% | |
| CCAGTCGTTAAGAGAAAATC+TGG | - | chr5.1:64749998-64750017 | None:intergenic | 40.0% | |
| CCATGAATCCACCCAATTAA+GGG | - | chr5.1:64749335-64749354 | None:intergenic | 40.0% | |
| CGTGAACTTCTATACGAAGA+AGG | - | chr5.1:64750495-64750514 | None:intergenic | 40.0% | |
| CTCGTTGAAGTAATACCTTG+AGG | - | chr5.1:64746995-64747014 | None:intergenic | 40.0% | |
| CTGTATATATGGGAGAAGGA+TGG | + | chr5.1:64750178-64750197 | MS.gene29645:CDS | 40.0% | |
| CTTAAAACGCCAATTAACGG+AGG | - | chr5.1:64748831-64748850 | None:intergenic | 40.0% | |
| GAAAAGGCTGCTATAACTCA+TGG | + | chr5.1:64748683-64748702 | MS.gene29645:CDS | 40.0% | |
| GCAGTCATATATGTCACTGT+TGG | + | chr5.1:64749597-64749616 | MS.gene29645:intron | 40.0% | |
| GCCACCAAAATCATCTTTCT+CGG | - | chr5.1:64750530-64750549 | None:intergenic | 40.0% | |
| GGAGACATACTATTTGTACC+TGG | + | chr5.1:64748176-64748195 | MS.gene29645:CDS | 40.0% | |
| GGATCAAAGACCTCATTATC+CGG | - | chr5.1:64750022-64750041 | None:intergenic | 40.0% | |
| GGTCACAATTCCTATCTAAC+CGG | + | chr5.1:64747198-64747217 | MS.gene29645:CDS | 40.0% | |
| GGTTAAGTTAACACTGGTAG+AGG | + | chr5.1:64749799-64749818 | MS.gene29645:intron | 40.0% | |
| GGTTTAATTGCCATTCATGC+TGG | + | chr5.1:64748578-64748597 | MS.gene29645:CDS | 40.0% | |
| GTCACAATTCCTATCTAACC+GGG | + | chr5.1:64747199-64747218 | MS.gene29645:CDS | 40.0% | |
| GTGACTGTATATATGGGAGA+AGG | + | chr5.1:64750174-64750193 | MS.gene29645:CDS | 40.0% | |
| TATATGTCACTGTTGGACAC+TGG | + | chr5.1:64749604-64749623 | MS.gene29645:intron | 40.0% | |
| TCAAATACCTCGTTCCATGT+AGG | - | chr5.1:64750445-64750464 | None:intergenic | 40.0% | |
| TCCATGAATCCACCCAATTA+AGG | - | chr5.1:64749336-64749355 | None:intergenic | 40.0% | |
| TGGAGTAAGATGGTCTTCTA+GGG | - | chr5.1:64747767-64747786 | None:intergenic | 40.0% | |
| TTGTGCTTGGTTCCATTGTA+GGG | + | chr5.1:64749902-64749921 | MS.gene29645:intron | 40.0% | |
| ! | AAGCTATTCTGGAGAGCTTA+TGG | - | chr5.1:64750305-64750324 | None:intergenic | 40.0% |
| ! | CATGGAATGTTTAGAGCCAA+TGG | + | chr5.1:64749950-64749969 | MS.gene29645:CDS | 40.0% |
| ! | CCAGATTTTCTCTTAACGAC+TGG | + | chr5.1:64749995-64750014 | MS.gene29645:CDS | 40.0% |
| ! | CCATCTTTAGGGAAACAGTT+TGG | + | chr5.1:64748478-64748497 | MS.gene29645:intron | 40.0% |
| ! | CTATATGTATTGGTCCATCG+CGG | + | chr5.1:64746524-64746543 | MS.gene29645:intron | 40.0% |
| ! | CTCAAGGTATTACTTCAACG+AGG | + | chr5.1:64746993-64747012 | MS.gene29645:intron | 40.0% |
| ! | CTCCGTTAATTGGCGTTTTA+AGG | + | chr5.1:64748829-64748848 | MS.gene29645:intron | 40.0% |
| ! | CTTATCTCCATTAGTTCTCC+AGG | - | chr5.1:64747985-64748004 | None:intergenic | 40.0% |
| ! | CTTGAAGATCTGGAGTAAGA+TGG | - | chr5.1:64747777-64747796 | None:intergenic | 40.0% |
| ! | GAATGTTTAGAGCCAATGGA+GGG | + | chr5.1:64749954-64749973 | MS.gene29645:CDS | 40.0% |
| ! | GTGGACCACAATTTAGAACT+AGG | - | chr5.1:64746692-64746711 | None:intergenic | 40.0% |
| ! | TAAATACAGGTTGGGATTGC+TGG | + | chr5.1:64750364-64750383 | MS.gene29645:intron | 40.0% |
| ! | TCCGAGAAAGATGATTTTGG+TGG | + | chr5.1:64750526-64750545 | MS.gene29645:CDS | 40.0% |
| ! | TTTGTCTCAAGGTACTCCTT+AGG | - | chr5.1:64748272-64748291 | None:intergenic | 40.0% |
| !! | ATTCTGAGGGTGTTTCCAAA+AGG | + | chr5.1:64749281-64749300 | MS.gene29645:CDS | 40.0% |
| !! | CTTTATATTCTGGAGCTACG+TGG | - | chr5.1:64748559-64748578 | None:intergenic | 40.0% |
| !! | TTTTCTCTTAACGACTGGTC+CGG | + | chr5.1:64750000-64750019 | MS.gene29645:CDS | 40.0% |
| !!! | TATTTTTGAGTTCACCGCGA+TGG | - | chr5.1:64746541-64746560 | None:intergenic | 40.0% |
| !!! | TTTTTATTTCGGGGCATTGC+AGG | + | chr5.1:64746661-64746680 | MS.gene29645:intron | 40.0% |
| AACATAACCACACCCTCCAT+TGG | - | chr5.1:64749969-64749988 | None:intergenic | 45.0% | |
| AAGAGGGTCTTGATCTCTTG+TGG | - | chr5.1:64745417-64745436 | None:intergenic | 45.0% | |
| AAGCATCTAATGAGCTCCAC+AGG | - | chr5.1:64747691-64747710 | None:intergenic | 45.0% | |
| AGATCACTTTGGCTGATGCA+TGG | + | chr5.1:64749932-64749951 | MS.gene29645:CDS | 45.0% | |
| AGTTTCTCTGCATAGCCAGA+AGG | + | chr5.1:64750594-64750613 | MS.gene29645:CDS | 45.0% | |
| ATGTCATATCATGGTGCACC+TGG | - | chr5.1:64747149-64747168 | None:intergenic | 45.0% | |
| ATTCATGCTGGGAAGTCGAA+AGG | + | chr5.1:64748590-64748609 | MS.gene29645:CDS | 45.0% | |
| CAAGGGCAATAGAGGATAAC+TGG | + | chr5.1:64750416-64750435 | MS.gene29645:CDS | 45.0% | |
| CCGAAACAGGTAAGCATGTT+TGG | - | chr5.1:64750552-64750571 | None:intergenic | 45.0% | |
| CCTATAGCAGACCAACAATC+AGG | - | chr5.1:64749246-64749265 | None:intergenic | 45.0% | |
| CGCATGGCTCAAAATAGATC+CGG | + | chr5.1:64748622-64748641 | MS.gene29645:CDS | 45.0% | |
| CTATCTCTGACTCTATCCCA+TGG | + | chr5.1:64748779-64748798 | MS.gene29645:intron | 45.0% | |
| CTGGAGTAAGATGGTCTTCT+AGG | - | chr5.1:64747768-64747787 | None:intergenic | 45.0% | |
| CTTATACGCCTCACTTTCTC+CGG | - | chr5.1:64748644-64748663 | None:intergenic | 45.0% | |
| GTGGATTCATGGAGCTCAAA+TGG | + | chr5.1:64749343-64749362 | MS.gene29645:CDS | 45.0% | |
| GTTTCTCTGCATAGCCAGAA+GGG | + | chr5.1:64750595-64750614 | MS.gene29645:CDS | 45.0% | |
| TCCAGATCTTCAAGCCAAAG+TGG | + | chr5.1:64747783-64747802 | MS.gene29645:CDS | 45.0% | |
| TGGAGCTCATTAGATGCTTG+AGG | + | chr5.1:64747692-64747711 | MS.gene29645:CDS | 45.0% | |
| TGTGCTTGGTTCCATTGTAG+GGG | + | chr5.1:64749903-64749922 | MS.gene29645:intron | 45.0% | |
| TTAACTAACCTCGGCCACTT+TGG | - | chr5.1:64747800-64747819 | None:intergenic | 45.0% | |
| TTCACGCAAGTTACGATGTG+AGG | + | chr5.1:64749778-64749797 | MS.gene29645:intron | 45.0% | |
| TTGGTTCCATTGTAGGGGTA+TGG | + | chr5.1:64749908-64749927 | MS.gene29645:intron | 45.0% | |
| TTTCGACTTCCCAGCATGAA+TGG | - | chr5.1:64748591-64748610 | None:intergenic | 45.0% | |
| ! | AAGGTACTCCTTAGGTGGTT+TGG | - | chr5.1:64748264-64748283 | None:intergenic | 45.0% |
| ! | CCCTTAATTGGGTGGATTCA+TGG | + | chr5.1:64749332-64749351 | MS.gene29645:CDS | 45.0% |
| ! | CCTGATTGTTGGTCTGCTAT+AGG | + | chr5.1:64749243-64749262 | MS.gene29645:intron | 45.0% |
| ! | CTCCATTAGTTCTCCAGGTT+AGG | - | chr5.1:64747980-64747999 | None:intergenic | 45.0% |
| ! | GAGTCAATGCGAGTACCTTT+TGG | - | chr5.1:64749299-64749318 | None:intergenic | 45.0% |
| ! | GGAATGTTTAGAGCCAATGG+AGG | + | chr5.1:64749953-64749972 | MS.gene29645:CDS | 45.0% |
| ! | TAGGACATTGACTACTCCTG+TGG | + | chr5.1:64747672-64747691 | MS.gene29645:intron | 45.0% |
| ! | TGGTTCCATTGTAGGGGTAT+GGG | + | chr5.1:64749909-64749928 | MS.gene29645:intron | 45.0% |
| !! | ATACGAAGAAGGGCTAGTTC+CGG | - | chr5.1:64750484-64750503 | None:intergenic | 45.0% |
| !! | CTATGTGTCTGTGTCGTTTC+TGG | - | chr5.1:64749539-64749558 | None:intergenic | 45.0% |
| !! | GGGTAATTGAGTTGGACTTG+TGG | + | chr5.1:64747283-64747302 | MS.gene29645:CDS | 45.0% |
| ACCTGGCTCAGAAAGCTTGA+AGG | + | chr5.1:64748193-64748212 | MS.gene29645:CDS | 50.0% | |
| AGGATAACTGGCTGCCTACA+TGG | + | chr5.1:64750428-64750447 | MS.gene29645:CDS | 50.0% | |
| CCTGCTCTCGTAGAGAAGAA+GGG | - | chr5.1:64749425-64749444 | None:intergenic | 50.0% | |
| CGAAAGGAGGAATAGACGCA+TGG | + | chr5.1:64748606-64748625 | MS.gene29645:CDS | 50.0% | |
| CTAGTTCCGGAACAGTAAGC+GGG | - | chr5.1:64750471-64750490 | None:intergenic | 50.0% | |
| CTCTGCAACGCTTTCACGAT+TGG | - | chr5.1:64747255-64747274 | None:intergenic | 50.0% | |
| CTTCGTCGCGTCAGAATTTC+CGG | + | chr5.1:64747732-64747751 | MS.gene29645:CDS | 50.0% | |
| CTTGTGGCCTAATGCATCCA+AGG | + | chr5.1:64747299-64747318 | MS.gene29645:CDS | 50.0% | |
| GATCTCCCATACCCCTACAA+TGG | - | chr5.1:64749917-64749936 | None:intergenic | 50.0% | |
| GCTAGTTCCGGAACAGTAAG+CGG | - | chr5.1:64750472-64750491 | None:intergenic | 50.0% | |
| GCTTACCTGTTTCGGAGCTA+AGG | + | chr5.1:64750557-64750576 | MS.gene29645:CDS | 50.0% | |
| GGATGATTCACTGCACGGAA+AGG | + | chr5.1:64748310-64748329 | MS.gene29645:CDS | 50.0% | |
| TAAGTCCAGCACCCCTTCTA+TGG | - | chr5.1:64745566-64745585 | None:intergenic | 50.0% | |
| TCCTGCTCTCGTAGAGAAGA+AGG | - | chr5.1:64749426-64749445 | None:intergenic | 50.0% | |
| TCCTTCAAGCTTTCTGAGCC+AGG | - | chr5.1:64748197-64748216 | None:intergenic | 50.0% | |
| TGAGTTCCCGCTTACTGTTC+CGG | + | chr5.1:64750462-64750481 | MS.gene29645:CDS | 50.0% | |
| TGTGGCTGCAATTGTGGTTG+TGG | - | chr5.1:64746711-64746730 | None:intergenic | 50.0% | |
| TTCTTCTCTACGAGAGCAGG+AGG | + | chr5.1:64749425-64749444 | MS.gene29645:intron | 50.0% | |
| ! | AACGACTGGTCCGGATAATG+AGG | + | chr5.1:64750009-64750028 | MS.gene29645:CDS | 50.0% |
| ! | AAGCGTTGCAGAGAGGTGTA+AGG | + | chr5.1:64747262-64747281 | MS.gene29645:CDS | 50.0% |
| ! | AGCGTTGCAGAGAGGTGTAA+GGG | + | chr5.1:64747263-64747282 | MS.gene29645:CDS | 50.0% |
| ! | AGGGGTATGGGAGATCACTT+TGG | + | chr5.1:64749921-64749940 | MS.gene29645:intron | 50.0% |
| ! | CAGCTGATTCCCGGTTAGAT+AGG | - | chr5.1:64747211-64747230 | None:intergenic | 50.0% |
| ! | CATTTCCATAGAAGGGGTGC+TGG | + | chr5.1:64745558-64745577 | MS.gene29645:CDS | 50.0% |
| ! | GAGATCCCGAGCTTCAAGTT+AGG | + | chr5.1:64748362-64748381 | MS.gene29645:CDS | 50.0% |
| ! | GTCAGCACTTGGTAGCTTGA+AGG | - | chr5.1:64749467-64749486 | None:intergenic | 50.0% |
| ! | GTCTCAAGGTACTCCTTAGG+TGG | - | chr5.1:64748269-64748288 | None:intergenic | 50.0% |
| ! | TTTAGAGCCAATGGAGGGTG+TGG | + | chr5.1:64749959-64749978 | MS.gene29645:CDS | 50.0% |
| !! | ATCGTGAAAGCGTTGCAGAG+AGG | + | chr5.1:64747255-64747274 | MS.gene29645:CDS | 50.0% |
| !! | GCCACTTTGGCTTGAAGATC+TGG | - | chr5.1:64747787-64747806 | None:intergenic | 50.0% |
| CATGCTGGGAAGTCGAAAGG+AGG | + | chr5.1:64748593-64748612 | MS.gene29645:CDS | 55.0% | |
| CCACTCCTTAGCTCCGAAAC+AGG | - | chr5.1:64750565-64750584 | None:intergenic | 55.0% | |
| CCCTTCTTCTCTACGAGAGC+AGG | + | chr5.1:64749422-64749441 | MS.gene29645:intron | 55.0% | |
| CCTGTTTCGGAGCTAAGGAG+TGG | + | chr5.1:64750562-64750581 | MS.gene29645:CDS | 55.0% | |
| CGGAAATTCTGACGCGACGA+AGG | - | chr5.1:64747734-64747753 | None:intergenic | 55.0% | |
| TCACTGCACGGAAAGGCTTC+AGG | + | chr5.1:64748317-64748336 | MS.gene29645:CDS | 55.0% | |
| TCTTCAAGCCAAAGTGGCCG+AGG | + | chr5.1:64747789-64747808 | MS.gene29645:CDS | 55.0% | |
| TTCAGGCGACGATGAAGCGT+GGG | + | chr5.1:64748334-64748353 | MS.gene29645:CDS | 55.0% | |
| ! | GTCACTGCTCAGCTGATTCC+CGG | - | chr5.1:64747220-64747239 | None:intergenic | 55.0% |
| !! | TGAGCCGGTCCTTTTTGAGC+AGG | + | chr5.1:64749705-64749724 | MS.gene29645:intron | 55.0% |
| CTGGCTGCCTACATGGAACG+AGG | + | chr5.1:64750435-64750454 | MS.gene29645:CDS | 60.0% | |
| CTTCAGGCGACGATGAAGCG+TGG | + | chr5.1:64748333-64748352 | MS.gene29645:CDS | 60.0% | |
| TCAGGCGACGATGAAGCGTG+GGG | + | chr5.1:64748335-64748354 | MS.gene29645:CDS | 60.0% | |
| CAGGCGACGATGAAGCGTGG+GGG | + | chr5.1:64748336-64748355 | MS.gene29645:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 64745345 | 64750666 | 64745345 | ID=MS.gene29645 |
| chr5.1 | mRNA | 64745345 | 64750666 | 64745345 | ID=MS.gene29645.t1;Parent=MS.gene29645 |
| chr5.1 | exon | 64745345 | 64745650 | 64745345 | ID=MS.gene29645.t1.exon1;Parent=MS.gene29645.t1 |
| chr5.1 | CDS | 64745345 | 64745650 | 64745345 | ID=cds.MS.gene29645.t1;Parent=MS.gene29645.t1 |
| chr5.1 | exon | 64747150 | 64747346 | 64747150 | ID=MS.gene29645.t1.exon2;Parent=MS.gene29645.t1 |
| chr5.1 | CDS | 64747150 | 64747346 | 64747150 | ID=cds.MS.gene29645.t1;Parent=MS.gene29645.t1 |
| chr5.1 | exon | 64747675 | 64747810 | 64747675 | ID=MS.gene29645.t1.exon3;Parent=MS.gene29645.t1 |
| chr5.1 | CDS | 64747675 | 64747810 | 64747675 | ID=cds.MS.gene29645.t1;Parent=MS.gene29645.t1 |
| chr5.1 | exon | 64748158 | 64748403 | 64748158 | ID=MS.gene29645.t1.exon4;Parent=MS.gene29645.t1 |
| chr5.1 | CDS | 64748158 | 64748403 | 64748158 | ID=cds.MS.gene29645.t1;Parent=MS.gene29645.t1 |
| chr5.1 | exon | 64748488 | 64748720 | 64748488 | ID=MS.gene29645.t1.exon5;Parent=MS.gene29645.t1 |
| chr5.1 | CDS | 64748488 | 64748720 | 64748488 | ID=cds.MS.gene29645.t1;Parent=MS.gene29645.t1 |
| chr5.1 | exon | 64749265 | 64749382 | 64749265 | ID=MS.gene29645.t1.exon6;Parent=MS.gene29645.t1 |
| chr5.1 | CDS | 64749265 | 64749382 | 64749265 | ID=cds.MS.gene29645.t1;Parent=MS.gene29645.t1 |
| chr5.1 | exon | 64749923 | 64750075 | 64749923 | ID=MS.gene29645.t1.exon7;Parent=MS.gene29645.t1 |
| chr5.1 | CDS | 64749923 | 64750075 | 64749923 | ID=cds.MS.gene29645.t1;Parent=MS.gene29645.t1 |
| chr5.1 | exon | 64750174 | 64750260 | 64750174 | ID=MS.gene29645.t1.exon8;Parent=MS.gene29645.t1 |
| chr5.1 | CDS | 64750174 | 64750260 | 64750174 | ID=cds.MS.gene29645.t1;Parent=MS.gene29645.t1 |
| chr5.1 | exon | 64750373 | 64750666 | 64750373 | ID=MS.gene29645.t1.exon9;Parent=MS.gene29645.t1 |
| chr5.1 | CDS | 64750373 | 64750666 | 64750373 | ID=cds.MS.gene29645.t1;Parent=MS.gene29645.t1 |
| Gene Sequence |
| Protein sequence |
