Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30224.t1 | XP_013451254.1 | 90.6 | 553 | 38 | 2 | 1 | 549 | 1 | 543 | 2.70E-277 | 964.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30224.t1 | Q6DD45 | 33.1 | 151 | 94 | 3 | 244 | 389 | 215 | 363 | 2.6e-18 | 95.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30224.t1 | G7ZZ57 | 90.6 | 553 | 38 | 2 | 1 | 549 | 1 | 543 | 1.9e-277 | 964.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050325 | MS.gene30224 | 0.80169 | 8.00E-49 | -1.69E-46 |
| MS.gene050327 | MS.gene30224 | 0.803199 | 3.91E-49 | -1.69E-46 |
| MS.gene057173 | MS.gene30224 | 0.80472 | 1.89E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30224.t1 | MTR_6g016990 | 92.405 | 553 | 28 | 2 | 1 | 549 | 1 | 543 | 0.0 | 991 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30224.t1 | AT5G38600 | 53.825 | 366 | 134 | 12 | 106 | 460 | 3 | 344 | 6.00e-114 | 345 |
| MS.gene30224.t1 | AT5G38600 | 53.533 | 368 | 136 | 12 | 106 | 462 | 14 | 357 | 1.23e-113 | 345 |
| MS.gene30224.t1 | AT5G38600 | 50.367 | 409 | 167 | 13 | 64 | 460 | 63 | 447 | 1.73e-113 | 347 |
| MS.gene30224.t1 | AT1G67210 | 51.807 | 332 | 138 | 5 | 75 | 400 | 44 | 359 | 7.80e-107 | 326 |
| MS.gene30224.t1 | AT1G67210 | 51.351 | 333 | 140 | 5 | 75 | 400 | 44 | 361 | 4.53e-105 | 322 |
| MS.gene30224.t1 | AT1G67210 | 53.788 | 264 | 107 | 3 | 75 | 338 | 44 | 292 | 1.16e-92 | 286 |
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 42600 | gene | 12514 | 19626 | 12514 | ID=MS.gene30224 |
| 42600 | mRNA | 12514 | 19626 | 12514 | ID=MS.gene30224.t1;Parent=MS.gene30224 |
| 42600 | exon | 19302 | 19626 | 19302 | ID=MS.gene30224.t1.exon1;Parent=MS.gene30224.t1 |
| 42600 | CDS | 19302 | 19626 | 19302 | ID=cds.MS.gene30224.t1;Parent=MS.gene30224.t1 |
| 42600 | exon | 18743 | 18821 | 18743 | ID=MS.gene30224.t1.exon2;Parent=MS.gene30224.t1 |
| 42600 | CDS | 18743 | 18821 | 18743 | ID=cds.MS.gene30224.t1;Parent=MS.gene30224.t1 |
| 42600 | exon | 18572 | 18647 | 18572 | ID=MS.gene30224.t1.exon3;Parent=MS.gene30224.t1 |
| 42600 | CDS | 18572 | 18647 | 18572 | ID=cds.MS.gene30224.t1;Parent=MS.gene30224.t1 |
| 42600 | exon | 18378 | 18458 | 18378 | ID=MS.gene30224.t1.exon4;Parent=MS.gene30224.t1 |
| 42600 | CDS | 18378 | 18458 | 18378 | ID=cds.MS.gene30224.t1;Parent=MS.gene30224.t1 |
| 42600 | exon | 17990 | 18126 | 17990 | ID=MS.gene30224.t1.exon5;Parent=MS.gene30224.t1 |
| 42600 | CDS | 17990 | 18126 | 17990 | ID=cds.MS.gene30224.t1;Parent=MS.gene30224.t1 |
| 42600 | exon | 16643 | 16895 | 16643 | ID=MS.gene30224.t1.exon6;Parent=MS.gene30224.t1 |
| 42600 | CDS | 16643 | 16895 | 16643 | ID=cds.MS.gene30224.t1;Parent=MS.gene30224.t1 |
| 42600 | exon | 13701 | 13764 | 13701 | ID=MS.gene30224.t1.exon7;Parent=MS.gene30224.t1 |
| 42600 | CDS | 13701 | 13764 | 13701 | ID=cds.MS.gene30224.t1;Parent=MS.gene30224.t1 |
| 42600 | exon | 12514 | 13148 | 12514 | ID=MS.gene30224.t1.exon8;Parent=MS.gene30224.t1 |
| 42600 | CDS | 12514 | 13148 | 12514 | ID=cds.MS.gene30224.t1;Parent=MS.gene30224.t1 |
| Gene Sequence |
| Protein sequence |
