AlfalfaGEDB | MS.gene30363

M. sativa cultivar XinJiangDaYe / MS.gene30363

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30363.t1	XP_013444440.1	97.3	670	15	1	1	670	1	667	0.00E+00	1253.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30363.t1	Q9LL45	33.8	142	74	5	497	631	479	607	1.5e-09	66.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30363.t1	A0A072TY48	97.3	670	15	1	1	670	1	667	0.0e+00	1253.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene30363.t1	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene011302	MS.gene30363	PPI
MS.gene07888	MS.gene30363	PPI
MS.gene30363	MS.gene25156	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30363.t1	MTR_8g020330	97.313	670	15	1	1	670	1	667	0.0	1345
MS.gene30363.t1	MTR_8g020330	96.716	670	15	2	1	670	1	663	0.0	1329
MS.gene30363.t1	MTR_8g020330	96.567	670	15	2	1	670	1	662	0.0	1328
MS.gene30363.t1	MTR_8g020330	95.970	670	15	3	1	670	1	658	0.0	1313
MS.gene30363.t1	MTR_8g020330	96.796	593	11	2	1	593	1	585	0.0	1176
MS.gene30363.t1	MTR_1g063940	35.714	154	93	4	515	666	305	454	2.40e-18	89.0
MS.gene30363.t1	MTR_1g063940	35.484	155	93	5	515	666	305	455	5.34e-18	87.8
MS.gene30363.t1	MTR_1g063940	35.484	155	93	5	515	666	313	463	6.44e-18	87.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30363.t1	AT1G72650	38.152	671	343	15	1	640	1	630	9.61e-119	368
MS.gene30363.t1	AT1G72650	38.589	666	341	15	1	640	1	624	1.91e-118	367
MS.gene30363.t1	AT1G17460	36.776	639	341	18	7	641	5	584	5.18e-96	308
MS.gene30363.t1	AT1G17460	36.503	652	345	20	7	641	5	604	3.00e-94	304
MS.gene30363.t1	AT1G17460	36.150	639	324	17	7	641	5	563	4.19e-93	300
MS.gene30363.t1	AT2G37025	51.064	94	45	1	546	638	288	381	1.22e-20	95.5
MS.gene30363.t1	AT2G37025	51.064	94	45	1	546	638	288	381	1.22e-20	95.5
MS.gene30363.t1	AT2G37025	51.064	94	45	1	546	638	288	381	1.22e-20	95.5
MS.gene30363.t1	AT3G53790	33.600	125	67	4	515	631	272	388	4.18e-11	65.9

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Find 169 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTCCATCCAACTGGCAC+GGG	0.516476	8.1:-78991967	MS.gene30363:CDS
AACAGATGATGAAGTAATGG+AGG	0.663256	8.1:-78994864	MS.gene30363:CDS
AACTGGTTGATGGTGTGTCG+CGG	0.661368	8.1:-78990895	MS.gene30363:CDS
AAGACAAACAGTGGTTGAGG+AGG	0.656203	8.1:-78993000	MS.gene30363:CDS
AAGACTGGAAAATCTTAATA+TGG	0.340239	8.1:-78992753	MS.gene30363:CDS
AAGTTTGTACACAACTGGAT+TGG	0.533387	8.1:+78996618	None:intergenic
AATAAAGTCGTTAGCAATCA+TGG	0.425285	8.1:-78991925	MS.gene30363:CDS
AATATTCCTACTGCTAAGGG+TGG	0.661873	8.1:-78990965	MS.gene30363:CDS
AATCTAGAGAGCAAATTCCT+AGG	0.527590	8.1:-78992631	MS.gene30363:CDS
AATGATTCAAAAGCCGTGGG+TGG	0.666719	8.1:-78992812	MS.gene30363:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	78989646	78996740	78989646	ID=MS.gene30363
chr8.1	mRNA	78989646	78996740	78989646	ID=MS.gene30363.t1;Parent=MS.gene30363
chr8.1	exon	78996612	78996740	78996612	ID=MS.gene30363.t1.exon1;Parent=MS.gene30363.t1
chr8.1	CDS	78996612	78996740	78996612	ID=cds.MS.gene30363.t1;Parent=MS.gene30363.t1
chr8.1	exon	78994741	78994915	78994741	ID=MS.gene30363.t1.exon2;Parent=MS.gene30363.t1
chr8.1	CDS	78994741	78994915	78994741	ID=cds.MS.gene30363.t1;Parent=MS.gene30363.t1
chr8.1	exon	78994275	78994333	78994275	ID=MS.gene30363.t1.exon3;Parent=MS.gene30363.t1
chr8.1	CDS	78994275	78994333	78994275	ID=cds.MS.gene30363.t1;Parent=MS.gene30363.t1
chr8.1	exon	78992436	78993416	78992436	ID=MS.gene30363.t1.exon4;Parent=MS.gene30363.t1
chr8.1	CDS	78992436	78993416	78992436	ID=cds.MS.gene30363.t1;Parent=MS.gene30363.t1
chr8.1	exon	78991852	78991989	78991852	ID=MS.gene30363.t1.exon5;Parent=MS.gene30363.t1
chr8.1	CDS	78991852	78991989	78991852	ID=cds.MS.gene30363.t1;Parent=MS.gene30363.t1
chr8.1	exon	78990817	78991113	78990817	ID=MS.gene30363.t1.exon6;Parent=MS.gene30363.t1
chr8.1	CDS	78990817	78991113	78990817	ID=cds.MS.gene30363.t1;Parent=MS.gene30363.t1
chr8.1	exon	78990639	78990695	78990639	ID=MS.gene30363.t1.exon7;Parent=MS.gene30363.t1
chr8.1	CDS	78990639	78990695	78990639	ID=cds.MS.gene30363.t1;Parent=MS.gene30363.t1
chr8.1	exon	78989646	78989822	78989646	ID=MS.gene30363.t1.exon8;Parent=MS.gene30363.t1
chr8.1	CDS	78989646	78989822	78989646	ID=cds.MS.gene30363.t1;Parent=MS.gene30363.t1

Gene Sequence

>MS.gene30363

ATGGAAACAGTTGTTGGAATTGAGGATTATGATGATGGGAAGCTTGGAGACAGTGGGATTGATAGAAGCAGTCATGCTTTGTCTTCACCGAAGCGGATTTCCAATCCAGTTGTGTACAAACTTGTTCGGGTATATATCTAGTTACTCACTGATTCAGTGTTTCAAATTTTTTAATATAGTTTTGTTGTGTGCTCCATGTGTGGGGAAAATTTGTAATTATTTTGTTTGATGATAAGACTAGACATGATAGGATTAGATATGACAACATTAGAGAGAGAGGCTGGGTAGCACCAATCGTAGAAAAGATGGTGGAATCTCGGCTTAGCTGGTTTGGGCATGTTGAGAGAAAACACGTAGATTATGTAGTAAGGAGAGTAGATCAGTGGAGGATAGTCAAATCACTAGCGGCAAAGGAAGACCTACTACACTAAAGCCCTAATCATTGTCCATGAAGCGTTCTAATCATATATTCTTTTTGTTTGTTGGTGTCTTATTATGTCGATGACAAAATGTTTAAACTCTAAAGCATCCCTCCCAATCTGTCTTTGTTACTTTGATGACAAAATGTTTAAACTCTAAAACATCCCCGCCCAATCTAATAATTAAGAAGCCCAAATAAATAAACTTAATAAAATCATCCATACATTTTTATTAGAATGATTGCTTGTCATTTTGGCAGCATAACTTTTTTTCTTGCCGGTTATTTATGATTGCATTCATAACGCCTTGATACCTTTTTTTTTTCTTTTCCTTTTCTTCCAGAATTGGCCTGCAATCTACTACAAAATATATGATGGCTCCAGTCTTCCTTTTATAGTCTAGTTATTCAATTGATTACCTTTGATCGTTGTATTGCAGTGTTTGCGTAATCGCGAGCATGATCATGTAATCCCACGATCATACGATTTAGAACGGGAATTTCTGTGCTACGATGATGTTAAGATTGTAGTTTTTAGGATCGGTGGTAGGATCATAGAAATCACAAGGCAGATCGCTGCAAAAAATTCCCCAATCTGGGTTTAGTTTTTGGGTAAAGCCGTAATTTTTTAATGTTGACGGGTTCGGGTCGGGTTTAGAGAAAAAAAAATCCCTGTTTTAAATTTAAAATAAAAAAAAAAAAAAATACTCAGTTTTCTTCATCTTTACTTGCCCGATACACACCCTGTTTAAGGAAAAACACTTCCCTTCTTCCTCACCTGCTACTGCCATTGAAACGGCGTCGTCGCTTTGTTTTTCCGGTGGCATGACCTCTGTTTCACTGTTTCCTGCGTCTGCCACTAAGCGTGTTTCTCTTAGACACCAAAGATGCTGTGCTAGTGCCTAGTTCCTCTGCATAGAGTACATATATGGTTTCTAACTTATGGTTATGAACTTAGTTTAATGTTGTGATTTAGAGGTTATTAATGTCATCTATGATAATTTTTATGCATGTGTATATAACAACATATTAGTATATTTTTACCTTATTAGTAGGATCTTATGATTCGTGCTACGATCCTCGGGTTACGATCTTTCAAACTTGTGCTGACTCTTGATTTTTAAAACATTGCTGCGTTTTTATATTTAAGTGAATTGCATGGTGCACCTTTGTAATTTGGTTGCATTATATTCATGTCTCCAAATTTTCGATAATAAAATGGAATGTTGAAATTTGAAAATGGAATTTATTGTGTGGTGAAAAGGAATTATATTTGAAAGGTAATTTGGCTACATTATATTTGTGTTCCCTAATTTTTTGTTACATGGTTCTACATTTTTGTTCCGTGATTTGTACTTTTATCTAGGGTTGTACATAATTCTTTGTGATATCTGATATGATGTTCAGGTTGAAGGTGATGGGAGGTTAGTGCCTGCAACAGATGATGAAGTAATGGAGGTCGAGGATTTTCTTGAATATGAAAACAGTGAAATGCGTGTTGTTGCAGACACTGGACAGAGTATGGAATGCATATCAATCGAAAGATCATCTTCTGGGAAGCTTCGATTGGAGTGCTCGGAAGGTGAATGCTCAATCTTTGAGTTGCAGAAATCGTTACTCATTTAGCATGTGCTGTGCTGGTCACATTAGAGTCAACTATTTTTCCAGGGATTTCTTTGCTGCTTGTTACTATAGTTTTATCTCTGAAAAACCAGGGATTTGAATGTTGTTTATGTCCTTCTTTTAGTTGTTTTATGACTCAAATTTGTGTGTTGGTGTCTTTTGGGTCAATGTTTTCTGTTTGTGAAGCTGTTGAATGCCTGAAGTTTTGTTTCTCTCGCTTATCACTTGAGATTTTTGGTTGATGGACTCGTGATGTATGCTTAGTTATATGGTTTTGAATTTTGTTAAGTTTTAGGAAAATTCCATGTTAGGTAACTTATTTCTCTTGCTCATATTTTCTCCTATTTTCTTCCAACTAATACCCAGGCGTTTCACAATTAGGCACTGCAGAGGCAGATTTGGGGAAGCTAAATGCAAAGTTTCAGGTGATTGGCTTTTTTTTTTTTCTTATCTCATCTCGTCTGCTTTTCTTTACACTTTGATTCCTTTTTGTTGTTTCTTCTGCATTATAAATTTTAAAATGTGTATCATGATTCTTTTGAATGCTTGGGAAAAGTTGGTAAAACTAACAAAACTCTGCCTTTTATCAGAGATACATAATAAAGGATTGCTATATATGATATTCCTCTTTATTAAATTATGAAATATAGATCAATTGAGCCAGTGATGAGCCTATTTATTAATAAATAAATGACATAACTGCATCAGGGGGGTCCTTTAACTTAATTCAAATTTTCAAACAAGTCCTTTATCTCTTTTGTGTCATTAGTCTTTTTTGTTTAAAATAGTCAACAATGTTAGACCAAACTTCATTTTTGACAAACTGAGTAATGTTTATCTAATTAAGAATTATAACATAACATTCACTACTTTGTGATGCTATAGTTTGGAAGAACTATGTCAAATATTTGTTACTGGATATAATACATGGTATGTGTATTGCAACTTTTCCATCTTGGACTCAATAAACGTATATTTATATTAAGTATCACATGGAGCATGTATTGTTTCCTTGACCAGAGTACATATATACATGCTTGGTTGGGTTTAAATTTTTTTATGAGTCTCTTAGATTGGTTTTTTTTATCCTTTACAATGTTATGTGTAGTTTTATTTGGAAAGTGGTTAATGATCTCATATTTTCTTACTAGCATGTTGTGAATTTTTCTTTTTCTTTCTTAATGGGTGCATAGTTATGGTTTTTGGGTTGCATGTGTTCATATCCTGACATTGGTAGTATTTTGTTTTCTAGGGTCCTTCTTTACCTCTAAAATTTCTTCTAGTATATTGAACAGATGCTGCAAAAGGTTAAACAGGAAGAGAAACTTCGCTTGTCGTCTCGGTCACCTGTTCATTCTCATGTACAAATAGATAGCCAGTGTTCTGCTGATAAATTTCCTGTCAGAAATGAGAAGGTTCTGTCTGAAACTCCATTCCAGGAAGCACATTCTATAGCATCAAGTTTAAATTATAGTCTTAGTAATCAATCTGGGAGTATCGATCAGTGTTCCAGACCTTCCGGAGGAGTGATAGAAAGTGGTTCATCTGCCTCTGCTGTCAATTCCGCTTTGAAGCATGATTTTTCCATGACAGATGGAGAAATATGTTTGGATAAGTTGTCGATCAAAGAACTTCATGAACTGTTTAAGGTCACTTTTGGTCGGGAAACTACTGTGAAAGACAAACAGTGGTTGAGGAGGAGGATTGCTATGAGTTTAACTAACTCATGCGATGTTTCAGCGACAACATTCACTGTTAAAGATAACAAAATAACTAGAAAATGTGAAGAAGAATGTTCTAGAAATGTGAATGCTGCAGCTGTAACCTCTGCGGAAAATATGGCTGTACAAAGGGATATCAAGTATAATGATTCAAAAGCCGTGGGTGGTTGCGAAGTTGATAATAACCAAGTTGCTACTGAAACAAGACTGGAAAATCTTAATATGGAACATGAATTAGAAGATGAGGATCAGCTGAGAGAACAAAGAGCTGCGAAAAGAATGCGTAAGCCCACTAAGCGATATATTGAAGAGCTCTCTGAAAATGAATCTAGAGAGCAAATTCCTAGGTCGTCAAGTTCTAATAAAAGTACGGGACACATACAGGCTTCTCCAACATCTTATGCCGGGCCTGCTAGGAATGCTTATCCAGAGACAAGAACATTTACCACCAGGTTAGACTCTCTTGGAGGTTCTGGTTTCCAAATTCCTTGTGTTACTCGGGTGCGAAGAAGTCGTCCACGGAAAAATATCACATCTCTTATGGTAAGTAATGCCTTTTCTTGCTTAAATATATGAAAGTAACACTTACCTTTATGTTTTTATCCCTGTTTTTAAGAGATCGTCTAAAATGTTATTAATTATTCCAAGTTATAATTGACATTATAAGATATTCTAACACTAGACGATCTTGATGTTTTATGAGATAAACTCAATTAGAAAGTTAGGGAATTTGTTTGTCTTTTTGTGAGTTAGATACATACGACCTTTGACGCTTTTCTCTGGTTATTTTAAGGCCAAATCTAATGCATCCTATTGATGTTGTCTTTAGGCCTTGCCATGTTTGATTGCATGCCTAGGAAATGCATTGGTTTACTCCTGTTGTGTCTTTCCAGAAGTCTCTTGAATGTTCCAGAAATAACTGATATATGATAGTCCTGTCAATTGTTTTTATTTTATTACAAACAGAAAACATAATGATTTTGTTTCAGAAATTCCATCCAACTGGCACGGGCGAGGCTGCAAAGTTAGGCAATAAAGTCGTTAGCAATCATGGTTCTGATGCTGATAGTGAAATTGAGGACAAATTCATAAAGCCAAGTTCAATGCCTGTGAAGGTTCATCAGACGGTAAGACCAACCAAGCATTTGCTAGTGATAGAATGTATAAGGTTATTTAATTTTATTTTTTTTGCGATGAAAGAACGTATGTATGTTTGTCTTTGTGGAAGAAGAAATTCATTAAGACAAAAAGGATGAATATTATTACAAAGGCAAAAACAAAGTACAATTATAGGATTATAATTTATAACAATGTCTGTGTGGTTACAGTGTTTAATAACTCTTAACCTGCCACAGGAATTTGGAAAATATCACATCACCTTTGAGTGATTGCATTAGGAATTGATTTTTTCAACTCTTTTTTACTTGTTTAAGATGTCGTTGGCTTCTAATATGTTGTGTAATTTGCTTCTGTATATTTCCTTTATTAAACACACGAACTCAATGTGGTGGGTAACAGTGTTCTCAAATATCGACCATGGCGGCTTTTTCACAACCGCCATGGCCAATTCATAAAGAATAGCGGCGCCGTGATGTTTTATGGTGCCTTTCATGTGTTATAACTATTAGAAGTATTAATAGGAAGTGATAACAAGTAATGGAAGTATTAAGCTTAATTGACCATGCAGTTTATGTTAATTTTCATATGCATTCTTACTTCGGTGTCAACATGACAGTTAGAAGAATTGCCTTAACTGACTGCTTTGATATGGCATGATTTCCTCTCCTTTATTTTTTTTCTATTTAATTCAATTTAGAACCATGATATAATCATTTTGATTTTGTGGGTTGGTGTCTTTCTTATAGTCTACTTCTGAGTCTAAGAAAGAGAAGATGCAGTATCCGGTAATGATTGGCACAACTGATCCAAGGCAGGAATTGAGGCCTAAAAAGATAGATCCCTCAAGTCATGCCACAGAGGGCAATATAGTTAATATTCCTACTGCTAAGGGTGGAATGAGGAGGAAGCATCATCGAGCATGGACCCTTGTTGAGGTATTGAAACTGGTTGATGGTGTGTCGCGGTGTGGACCAGGGAGGTGGTCTGAGATCAAACGGCTCTCCTTTTCTTCGTACTCACATCGTACCTCTGTTGATCTCAAGGTACTCATTAATAAATTCATGTCATGTGGATTGTTGATCTTGTGAAAACTGGTAGAGAACATCTAAGGCTAGATTTTGGTCTTTTTGCATGCATACGTTGAATCCATATTTTGCTTTGCAGGACAAGTGGAGGAATTTGCTCAAAGCTAGCTTTGCACCGACACCTGCTGATGAGGGGGTAAGAGTTTATGACACGAAATTTCAGTTTGATCTCACTGAAGTGGGTTAAGTTAGTTTCTAACACACTCGTGTGTCTTCTGGTGCATGCCGTGGAATGTGTTGGCATATTTACATCATGCATACATGAGACCTGATATGTCATTAATGTCTTATCCCATATATTACGAGTGAATCACCAGTTTTTCTCTAAAATTGTGGGGTTTGTCAATTTAGACCCTGGAAATAATGAAATTCCAAAATGATCATTGCAATTAAAAATCCTCGATCAAATTAGTTCTTTCGGGACAGTTACAGGGACTATATTGACATGCCCAAAAGGACTAGTATGATTGAGGATTTCCAATCTCCCATTATTTTTTTTATTTTGTTCGTATCACGTACCAAATTGCTCGACGCCTATAATTTTTAGTGACTAATATGGTGATTCGCTTGTTTATTTATATATCAAAAAATCTGAATCATCCTATTAACTCTTTTTTATCATTCCCATGTTTTATCTGAACAATGCTTTTTAGTTGGCATGTTTTGTGGGCTGCAAATCCACTGGTTCCTCCTTACTAACATTCCCTGAATTTGTCCTCAAGTTACTTTCTAGAAATGAAAATTCCTCAAATGTTTAAAAACTGAACCAGACATCAACATGGGACGAACCCACGGTTGAACCGCTTAAACAACCCAATCACGGTTCAATCAGTTGAACCGTCCGGTTCAGTTTTTAAAACTTTGAAATATTACTTCAACTCTTCAATTAGAAATTTGTGAAGTTAAAAGTCCAGCTTTGATGATTACATCAACATTTATTTGCTTATGACAGATGAATTCGCGGAAGCATGGTGCCGCCCCGATTCCTGAGCCAATTTTAGTACGTGTGAGAGAGCTAGCAGAGATAAATTCTCAAGTACCTTCAAATTCCAGTTCAAGCAAGTTGACAGCTAATGGTGCAACTAATGGTCCAAGGAGTATGCATGGAGACAGAGTGGGGTACTTGTAG

Protein sequence

>MS.gene30363.t1

METVVGIEDYDDGKLGDSGIDRSSHALSSPKRISNPVVYKLVRVEGDGRLVPATDDEVMEVEDFLEYENSEMRVVADTGQSMECISIERSSSGKLRLECSEGVSQLGTAEADLGKLNAKFQYIEQMLQKVKQEEKLRLSSRSPVHSHVQIDSQCSADKFPVRNEKVLSETPFQEAHSIASSLNYSLSNQSGSIDQCSRPSGGVIESGSSASAVNSALKHDFSMTDGEICLDKLSIKELHELFKVTFGRETTVKDKQWLRRRIAMSLTNSCDVSATTFTVKDNKITRKCEEECSRNVNAAAVTSAENMAVQRDIKYNDSKAVGGCEVDNNQVATETRLENLNMEHELEDEDQLREQRAAKRMRKPTKRYIEELSENESREQIPRSSSSNKSTGHIQASPTSYAGPARNAYPETRTFTTRLDSLGGSGFQIPCVTRVRRSRPRKNITSLMKFHPTGTGEAAKLGNKVVSNHGSDADSEIEDKFIKPSSMPVKVHQTSTSESKKEKMQYPVMIGTTDPRQELRPKKIDPSSHATEGNIVNIPTAKGGMRRKHHRAWTLVEVLKLVDGVSRCGPGRWSEIKRLSFSSYSHRTSVDLKDKWRNLLKASFAPTPADEGMNSRKHGAAPIPEPILVRVRELAEINSQVPSNSSSSKLTANGATNGPRSMHGDRVGYL