Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30401.t1 | XP_003608925.1 | 96.5 | 401 | 14 | 0 | 1 | 401 | 1 | 401 | 2.80E-223 | 784.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30401.t1 | O48716 | 33.8 | 340 | 200 | 8 | 59 | 394 | 98 | 416 | 2.3e-45 | 184.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30401.t1 | G7JNR9 | 96.5 | 401 | 14 | 0 | 1 | 401 | 1 | 401 | 2.0e-223 | 784.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051118 | MS.gene30401 | 0.908853 | 1.08E-81 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006731 | MS.gene30401 | PPI |
| MS.gene045436 | MS.gene30401 | PPI |
| MS.gene070758 | MS.gene30401 | PPI |
| MS.gene070761 | MS.gene30401 | PPI |
| MS.gene070760 | MS.gene30401 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30401.t1 | MTR_4g106480 | 96.509 | 401 | 14 | 0 | 1 | 401 | 1 | 401 | 0.0 | 794 |
| MS.gene30401.t1 | MTR_3g078380 | 61.858 | 409 | 123 | 8 | 14 | 401 | 18 | 414 | 5.42e-171 | 484 |
| MS.gene30401.t1 | MTR_5g035980 | 50.245 | 408 | 157 | 11 | 33 | 401 | 48 | 448 | 7.47e-128 | 376 |
| MS.gene30401.t1 | MTR_8g089650 | 46.253 | 387 | 177 | 12 | 26 | 398 | 61 | 430 | 3.20e-107 | 323 |
| MS.gene30401.t1 | MTR_4g104410 | 42.975 | 363 | 185 | 12 | 39 | 397 | 20 | 364 | 4.46e-83 | 258 |
| MS.gene30401.t1 | MTR_5g018520 | 40.708 | 339 | 180 | 6 | 59 | 395 | 99 | 418 | 6.39e-80 | 253 |
| MS.gene30401.t1 | MTR_1g021590 | 41.399 | 343 | 170 | 11 | 59 | 394 | 111 | 429 | 2.42e-78 | 249 |
| MS.gene30401.t1 | MTR_4g068457 | 38.192 | 343 | 189 | 7 | 59 | 395 | 130 | 455 | 1.59e-74 | 240 |
| MS.gene30401.t1 | MTR_2g060070 | 35.673 | 342 | 192 | 12 | 60 | 399 | 67 | 382 | 3.11e-63 | 209 |
| MS.gene30401.t1 | MTR_2g101410 | 32.840 | 405 | 234 | 13 | 5 | 395 | 26 | 406 | 2.36e-51 | 178 |
| MS.gene30401.t1 | MTR_3g110185 | 34.454 | 357 | 205 | 12 | 48 | 398 | 78 | 411 | 2.36e-49 | 179 |
| MS.gene30401.t1 | MTR_1g034785 | 26.255 | 259 | 135 | 10 | 176 | 392 | 114 | 358 | 2.44e-15 | 77.8 |
| MS.gene30401.t1 | MTR_1g072140 | 29.282 | 181 | 116 | 6 | 170 | 347 | 18 | 189 | 1.32e-12 | 68.6 |
| MS.gene30401.t1 | MTR_8g028700 | 28.251 | 223 | 124 | 11 | 179 | 394 | 230 | 423 | 2.26e-12 | 68.9 |
| MS.gene30401.t1 | MTR_3g106080 | 22.222 | 333 | 181 | 11 | 45 | 343 | 331 | 619 | 3.47e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30401.t1 | AT5G50120 | 55.438 | 377 | 147 | 7 | 36 | 399 | 19 | 387 | 3.47e-143 | 413 |
| MS.gene30401.t1 | AT1G24130 | 55.615 | 374 | 152 | 8 | 33 | 398 | 45 | 412 | 3.32e-130 | 380 |
| MS.gene30401.t1 | AT1G24530 | 44.709 | 378 | 179 | 11 | 28 | 398 | 51 | 405 | 9.18e-99 | 300 |
| MS.gene30401.t1 | AT2G26490 | 40.000 | 340 | 179 | 8 | 59 | 394 | 98 | 416 | 1.43e-76 | 245 |
| MS.gene30401.t1 | AT3G50390 | 38.304 | 342 | 188 | 9 | 59 | 395 | 100 | 423 | 2.28e-73 | 236 |
| MS.gene30401.t1 | AT3G18950 | 39.359 | 343 | 183 | 8 | 59 | 395 | 140 | 463 | 4.28e-71 | 231 |
| MS.gene30401.t1 | AT4G34380 | 38.329 | 347 | 186 | 8 | 59 | 395 | 127 | 455 | 2.93e-68 | 224 |
| MS.gene30401.t1 | AT1G49450 | 37.640 | 356 | 191 | 9 | 52 | 395 | 129 | 465 | 4.22e-68 | 223 |
| MS.gene30401.t1 | AT3G51930 | 37.465 | 355 | 184 | 12 | 60 | 399 | 64 | 395 | 4.68e-67 | 219 |
| MS.gene30401.t1 | AT1G47610 | 37.249 | 349 | 180 | 12 | 59 | 395 | 26 | 347 | 4.66e-65 | 211 |
| MS.gene30401.t1 | AT3G49180 | 33.023 | 215 | 110 | 10 | 176 | 368 | 116 | 318 | 2.03e-13 | 72.0 |
| MS.gene30401.t1 | AT3G49660 | 23.476 | 328 | 193 | 14 | 95 | 394 | 15 | 312 | 1.45e-12 | 68.6 |
| MS.gene30401.t1 | AT5G49200 | 27.602 | 221 | 132 | 8 | 179 | 396 | 130 | 325 | 7.31e-12 | 67.0 |
| MS.gene30401.t1 | AT4G02730 | 33.099 | 142 | 77 | 5 | 256 | 395 | 31 | 156 | 8.61e-12 | 66.2 |
| MS.gene30401.t1 | AT1G11160 | 26.293 | 232 | 145 | 9 | 169 | 396 | 4 | 213 | 2.65e-11 | 66.2 |
| MS.gene30401.t1 | AT1G11160 | 26.293 | 232 | 145 | 9 | 169 | 396 | 4 | 213 | 2.67e-11 | 66.2 |
| MS.gene30401.t1 | AT1G11160 | 26.293 | 232 | 145 | 9 | 169 | 396 | 4 | 213 | 2.74e-11 | 65.9 |
Find 67 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGATAAGACAATTCGAATT+TGG | 0.268980 | 8.1:-78443468 | MS.gene30401:CDS |
| AAGTTTGGACTGTGATATTA+AGG | 0.272095 | 8.1:-78443305 | MS.gene30401:CDS |
| ACAATAGTTAGGCACTTAAT+TGG | 0.277575 | 8.1:+78443379 | None:intergenic |
| GTTGAGGGTGAGAATGAATA+TGG | 0.282172 | 8.1:+78444205 | None:intergenic |
| ATGTTGGGAGTGTGGCTAAA+TGG | 0.285118 | 8.1:+78444028 | None:intergenic |
| TCAATATTGGTATCTGAAAA+AGG | 0.299182 | 8.1:-78443589 | MS.gene30401:CDS |
| CCTTGTTATATTCTGTTTCA+TGG | 0.304199 | 8.1:-78443882 | MS.gene30401:CDS |
| ATATCCTCTTTAACACTTGT+AGG | 0.315862 | 8.1:-78444282 | MS.gene30401:CDS |
| AACCAAAGACTTCACGTGTT+TGG | 0.328930 | 8.1:-78443836 | MS.gene30401:CDS |
| TTCCAAACACGTGAAGTCTT+TGG | 0.336054 | 8.1:+78443834 | None:intergenic |
| TCTTATCTACAGTGGAAGTT+TGG | 0.340317 | 8.1:-78443320 | MS.gene30401:CDS |
| AACACTAACACAATAGTATC+TGG | 0.378047 | 8.1:-78444174 | MS.gene30401:CDS |
| GTATTGTTGTTTGAGTGTTT+TGG | 0.382666 | 8.1:-78443416 | MS.gene30401:CDS |
| CACAAAGTCTATATTGTGTT+TGG | 0.388010 | 8.1:-78443524 | MS.gene30401:CDS |
| TTTGGCTGTGGTTTCCGATT+TGG | 0.391666 | 8.1:-78443506 | MS.gene30401:CDS |
| AAAACCATGTTAATATTAGA+AGG | 0.405172 | 8.1:-78443972 | MS.gene30401:CDS |
| ACATTTGTTAGTTGATACTT+TGG | 0.417662 | 8.1:-78443689 | MS.gene30401:CDS |
| TGTTGGGAGTGTGGCTAAAT+GGG | 0.428968 | 8.1:+78444029 | None:intergenic |
| AAGATAACAAAATCCGCGTT+TGG | 0.438563 | 8.1:-78444095 | MS.gene30401:CDS |
| GTCTATATTGTGTTTGGCTG+TGG | 0.439005 | 8.1:-78443518 | MS.gene30401:CDS |
| CAAGGTTCCATCTTTCGATA+AGG | 0.440768 | 8.1:+78443900 | None:intergenic |
| AGTGATCAAGCACAATAGTT+AGG | 0.447101 | 8.1:+78443368 | None:intergenic |
| GTGAAACGATCTATGAATGT+TGG | 0.451524 | 8.1:+78444012 | None:intergenic |
| AGACTTCACGTGTTTGGAAT+CGG | 0.453279 | 8.1:-78443830 | MS.gene30401:CDS |
| AACACAATAGTATCTGGAAA+TGG | 0.466792 | 8.1:-78444168 | MS.gene30401:CDS |
| TGCATGTGATAGATCAATAT+TGG | 0.470368 | 8.1:-78443602 | MS.gene30401:CDS |
| GCAATCACAGTTTCTAATGA+TGG | 0.473911 | 8.1:-78443778 | MS.gene30401:CDS |
| TGAAACGATCTATGAATGTT+GGG | 0.478701 | 8.1:+78444013 | None:intergenic |
| AATGGTAATTTGATAGTCAT+AGG | 0.480190 | 8.1:-78443562 | MS.gene30401:CDS |
| CTTGTTATATTCTGTTTCAT+GGG | 0.480779 | 8.1:-78443881 | MS.gene30401:CDS |
| ACTTTGGAGAAACACAGGTC+TGG | 0.494679 | 8.1:-78443673 | MS.gene30401:CDS |
| CCATGATGTGACTTCTGTGT+TGG | 0.496060 | 8.1:+78444236 | None:intergenic |
| TGGACTGTGATATTAAGGTT+TGG | 0.496672 | 8.1:-78443300 | MS.gene30401:CDS |
| TAGTGTTAATTGATTGTTGA+GGG | 0.498235 | 8.1:+78444190 | None:intergenic |
| AGAACCACTGCACACCAAAT+CGG | 0.501162 | 8.1:+78443492 | None:intergenic |
| AAATATACCGTTTACAGAAG+AGG | 0.503801 | 8.1:+78443265 | None:intergenic |
| CTTTGGAGAAACACAGGTCT+GGG | 0.512071 | 8.1:-78443672 | MS.gene30401:CDS |
| TCTCTTGCCTTATCGAAAGA+TGG | 0.516196 | 8.1:-78443907 | MS.gene30401:CDS |
| CAGGTCTGGGATTAATGCAT+TGG | 0.528247 | 8.1:-78443659 | MS.gene30401:CDS |
| GTAGGAAAATTCCTTTACAC+TGG | 0.545108 | 8.1:-78444264 | MS.gene30401:CDS |
| GCATTGGCTCTTAACAGTGA+TGG | 0.550237 | 8.1:-78443643 | MS.gene30401:CDS |
| GTTATTAGAGTCGTTGCTGA+AGG | 0.556540 | 8.1:+78444443 | None:intergenic |
| ATAGTCATAGGTGCTCTTCG+TGG | 0.558858 | 8.1:-78443550 | MS.gene30401:CDS |
| CAGAGTTGTGAGGCATGTGA+AGG | 0.562369 | 8.1:+78444320 | None:intergenic |
| CCAACACAGAAGTCACATCA+TGG | 0.577575 | 8.1:-78444236 | MS.gene30401:CDS |
| CTTGTCTGAATGAACTACAA+TGG | 0.582865 | 8.1:+78444134 | None:intergenic |
| TTCATGGGACAGAACAATCA+AGG | 0.585469 | 8.1:-78443866 | MS.gene30401:CDS |
| TTGATACTTTGGAGAAACAC+AGG | 0.587467 | 8.1:-78443678 | MS.gene30401:CDS |
| GGTGAGAATGAATATGGGAA+AGG | 0.601558 | 8.1:+78444211 | None:intergenic |
| TTGAGGGTGAGAATGAATAT+GGG | 0.604046 | 8.1:+78444206 | None:intergenic |
| TGTGGGTTTGAGTTGAGAGA+AGG | 0.611992 | 8.1:+78444360 | None:intergenic |
| TGTTGGATGAACCAGTGTAA+AGG | 0.614019 | 8.1:+78444253 | None:intergenic |
| TTAGTGTTAATTGATTGTTG+AGG | 0.615795 | 8.1:+78444189 | None:intergenic |
| TGTGCCTTCTAATATTAACA+TGG | 0.616075 | 8.1:+78443968 | None:intergenic |
| ATCTATGAATGTTGGGAGTG+TGG | 0.617369 | 8.1:+78444020 | None:intergenic |
| TTTGGTGTGCAGTGGTTCTG+AGG | 0.623985 | 8.1:-78443488 | MS.gene30401:CDS |
| AATGATGGATATGTTTACAC+CGG | 0.626851 | 8.1:-78443763 | MS.gene30401:CDS |
| GAGATGAGACTGTGCCAACA+TGG | 0.629904 | 8.1:+78443926 | None:intergenic |
| CCATGAAACAGAATATAACA+AGG | 0.635096 | 8.1:+78443882 | None:intergenic |
| AAGACAATTCGAATTTGGCG+AGG | 0.636015 | 8.1:-78443463 | MS.gene30401:CDS |
| TGCACATGGGTGCACCATGT+TGG | 0.643160 | 8.1:-78443940 | MS.gene30401:CDS |
| GTTTCCGATTTGGTGTGCAG+TGG | 0.647994 | 8.1:-78443496 | MS.gene30401:CDS |
| TGTAGAATTTCAGAGTTGTG+AGG | 0.653037 | 8.1:+78444310 | None:intergenic |
| ATAAGAAAAGATGCTTCAGA+CGG | 0.660091 | 8.1:+78443337 | None:intergenic |
| GGGACAGAACAATCAAGGTG+TGG | 0.660498 | 8.1:-78443861 | MS.gene30401:CDS |
| TTGTGAAGAAAGAGTACGTG+TGG | 0.685509 | 8.1:+78444401 | None:intergenic |
| TGAGAGAAGGAACTGATGCG+AGG | 0.688278 | 8.1:+78444373 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTATGAAATTGTTGT+GGG | + | chr8.1:78443395-78443414 | None:intergenic | 15.0% |
| !! | ATCAACAGATAAAAAAATTA+AGG | - | chr8.1:78443995-78444014 | MS.gene30401:CDS | 15.0% |
| !! | AAAACCATGTTAATATTAGA+AGG | - | chr8.1:78443763-78443782 | MS.gene30401:CDS | 20.0% |
| !! | CAGATAAAAAAATTAAGGTT+TGG | - | chr8.1:78444000-78444019 | MS.gene30401:CDS | 20.0% |
| !! | GAAAAATTATGAAATTGTTG+TGG | + | chr8.1:78443396-78443415 | None:intergenic | 20.0% |
| !!! | AATTTTTTTATCTGTTGATC+CGG | + | chr8.1:78443994-78444013 | None:intergenic | 20.0% |
| !!! | CTAATATTAACATGGTTTTT+CGG | + | chr8.1:78443762-78443781 | None:intergenic | 20.0% |
| !!! | TAATATTAACATGGTTTTTC+GGG | + | chr8.1:78443761-78443780 | None:intergenic | 20.0% |
| ! | AAGGTTTGGAAGAAAAATAA+AGG | - | chr8.1:78444014-78444033 | MS.gene30401:CDS | 25.0% |
| ! | TAGTGTTAATTGATTGTTGA+GGG | + | chr8.1:78443548-78443567 | None:intergenic | 25.0% |
| ! | TCAATATTGGTATCTGAAAA+AGG | - | chr8.1:78444146-78444165 | MS.gene30401:CDS | 25.0% |
| ! | TTAGTGTTAATTGATTGTTG+AGG | + | chr8.1:78443549-78443568 | None:intergenic | 25.0% |
| !! | AATGGTAATTTGATAGTCAT+AGG | - | chr8.1:78444173-78444192 | MS.gene30401:CDS | 25.0% |
| !! | ACATTTGTTAGTTGATACTT+TGG | - | chr8.1:78444046-78444065 | MS.gene30401:CDS | 25.0% |
| !! | CTTGTTATATTCTGTTTCAT+GGG | - | chr8.1:78443854-78443873 | MS.gene30401:CDS | 25.0% |
| !!! | GTGTGGTAATTAACTTTTTT+TGG | + | chr8.1:78443320-78443339 | None:intergenic | 25.0% |
| AACACAATAGTATCTGGAAA+TGG | - | chr8.1:78443567-78443586 | MS.gene30401:CDS | 30.0% | |
| AACACTAACACAATAGTATC+TGG | - | chr8.1:78443561-78443580 | MS.gene30401:CDS | 30.0% | |
| AAGTTTGGACTGTGATATTA+AGG | - | chr8.1:78444430-78444449 | MS.gene30401:CDS | 30.0% | |
| ACAATAGTTAGGCACTTAAT+TGG | + | chr8.1:78444359-78444378 | None:intergenic | 30.0% | |
| AGGATAAGACAATTCGAATT+TGG | - | chr8.1:78444267-78444286 | MS.gene30401:CDS | 30.0% | |
| ATAAGAAAAGATGCTTCAGA+CGG | + | chr8.1:78444401-78444420 | None:intergenic | 30.0% | |
| ATATCCTCTTTAACACTTGT+AGG | - | chr8.1:78443453-78443472 | MS.gene30401:CDS | 30.0% | |
| CACAAAGTCTATATTGTGTT+TGG | - | chr8.1:78444211-78444230 | MS.gene30401:CDS | 30.0% | |
| CCATGAAACAGAATATAACA+AGG | + | chr8.1:78443856-78443875 | None:intergenic | 30.0% | |
| GTATCTGAAAAAGGTGAAAA+TGG | - | chr8.1:78444155-78444174 | MS.gene30401:CDS | 30.0% | |
| TGAAACGATCTATGAATGTT+GGG | + | chr8.1:78443725-78443744 | None:intergenic | 30.0% | |
| TGCATGTGATAGATCAATAT+TGG | - | chr8.1:78444133-78444152 | MS.gene30401:CDS | 30.0% | |
| TGTGCCTTCTAATATTAACA+TGG | + | chr8.1:78443770-78443789 | None:intergenic | 30.0% | |
| ! | CCTTGTTATATTCTGTTTCA+TGG | - | chr8.1:78443853-78443872 | MS.gene30401:CDS | 30.0% |
| ! | TTTTCCTACAAGTGTTAAAG+AGG | + | chr8.1:78443460-78443479 | None:intergenic | 30.0% |
| !! | AATGATGGATATGTTTACAC+CGG | - | chr8.1:78443972-78443991 | MS.gene30401:CDS | 30.0% |
| !!! | GTATTGTTGTTTGAGTGTTT+TGG | - | chr8.1:78444319-78444338 | MS.gene30401:CDS | 30.0% |
| !!! | TATTGTTGATTTTCCAAACG+CGG | + | chr8.1:78443656-78443675 | None:intergenic | 30.0% |
| AAGATAACAAAATCCGCGTT+TGG | - | chr8.1:78443640-78443659 | MS.gene30401:CDS | 35.0% | |
| AAGGCACAAAAAATGCACAT+GGG | - | chr8.1:78443782-78443801 | MS.gene30401:CDS | 35.0% | |
| AGTGATCAAGCACAATAGTT+AGG | + | chr8.1:78444370-78444389 | None:intergenic | 35.0% | |
| CTTGTCTGAATGAACTACAA+TGG | + | chr8.1:78443604-78443623 | None:intergenic | 35.0% | |
| GCAATCACAGTTTCTAATGA+TGG | - | chr8.1:78443957-78443976 | MS.gene30401:CDS | 35.0% | |
| GTAGGAAAATTCCTTTACAC+TGG | - | chr8.1:78443471-78443490 | MS.gene30401:CDS | 35.0% | |
| GTGAAACGATCTATGAATGT+TGG | + | chr8.1:78443726-78443745 | None:intergenic | 35.0% | |
| TCTTATCTACAGTGGAAGTT+TGG | - | chr8.1:78444415-78444434 | MS.gene30401:CDS | 35.0% | |
| TGGACTGTGATATTAAGGTT+TGG | - | chr8.1:78444435-78444454 | MS.gene30401:CDS | 35.0% | |
| TGTAGAATTTCAGAGTTGTG+AGG | + | chr8.1:78443428-78443447 | None:intergenic | 35.0% | |
| TTGAGGGTGAGAATGAATAT+GGG | + | chr8.1:78443532-78443551 | None:intergenic | 35.0% | |
| ! | GCATCTTTTCTTATCTACAG+TGG | - | chr8.1:78444407-78444426 | MS.gene30401:CDS | 35.0% |
| ! | TTGATACTTTGGAGAAACAC+AGG | - | chr8.1:78444057-78444076 | MS.gene30401:CDS | 35.0% |
| !! | GATGGTTCTGTTTTGTATTC+TGG | - | chr8.1:78444110-78444129 | MS.gene30401:CDS | 35.0% |
| !! | TGTTGTTTGAGTGTTTTGGA+AGG | - | chr8.1:78444323-78444342 | MS.gene30401:CDS | 35.0% |
| !!! | GTTGTTTGAGTGTTTTGGAA+GGG | - | chr8.1:78444324-78444343 | MS.gene30401:CDS | 35.0% |
| AACCAAAGACTTCACGTGTT+TGG | - | chr8.1:78443899-78443918 | MS.gene30401:CDS | 40.0% | |
| AAGACAATTCGAATTTGGCG+AGG | - | chr8.1:78444272-78444291 | MS.gene30401:CDS | 40.0% | |
| ATCTATGAATGTTGGGAGTG+TGG | + | chr8.1:78443718-78443737 | None:intergenic | 40.0% | |
| CAAGGTTCCATCTTTCGATA+AGG | + | chr8.1:78443838-78443857 | None:intergenic | 40.0% | |
| GGTGAGAATGAATATGGGAA+AGG | + | chr8.1:78443527-78443546 | None:intergenic | 40.0% | |
| GTCTATATTGTGTTTGGCTG+TGG | - | chr8.1:78444217-78444236 | MS.gene30401:CDS | 40.0% | |
| GTTATTAGAGTCGTTGCTGA+AGG | + | chr8.1:78443295-78443314 | None:intergenic | 40.0% | |
| GTTGAGGGTGAGAATGAATA+TGG | + | chr8.1:78443533-78443552 | None:intergenic | 40.0% | |
| TCTCTTGCCTTATCGAAAGA+TGG | - | chr8.1:78443828-78443847 | MS.gene30401:CDS | 40.0% | |
| TGTTGGATGAACCAGTGTAA+AGG | + | chr8.1:78443485-78443504 | None:intergenic | 40.0% | |
| TTCATGGGACAGAACAATCA+AGG | - | chr8.1:78443869-78443888 | MS.gene30401:CDS | 40.0% | |
| TTCCAAACACGTGAAGTCTT+TGG | + | chr8.1:78443904-78443923 | None:intergenic | 40.0% | |
| ! | AGACTTCACGTGTTTGGAAT+CGG | - | chr8.1:78443905-78443924 | MS.gene30401:CDS | 40.0% |
| ! | GAAGGCACAAAAAATGCACA+TGG | - | chr8.1:78443781-78443800 | MS.gene30401:CDS | 40.0% |
| ! | TTGTGAAGAAAGAGTACGTG+TGG | + | chr8.1:78443337-78443356 | None:intergenic | 40.0% |
| !!! | AGTGTTTTGGAAGGGCATAA+AGG | - | chr8.1:78444332-78444351 | MS.gene30401:CDS | 40.0% |
| !!! | TAACATGGTTTTTCGGGATG+AGG | + | chr8.1:78443755-78443774 | None:intergenic | 40.0% |
| AGAACCACTGCACACCAAAT+CGG | + | chr8.1:78444246-78444265 | None:intergenic | 45.0% | |
| ATAGTCATAGGTGCTCTTCG+TGG | - | chr8.1:78444185-78444204 | MS.gene30401:CDS | 45.0% | |
| CCAACACAGAAGTCACATCA+TGG | - | chr8.1:78443499-78443518 | MS.gene30401:CDS | 45.0% | |
| CCATGATGTGACTTCTGTGT+TGG | + | chr8.1:78443502-78443521 | None:intergenic | 45.0% | |
| TTTGGCTGTGGTTTCCGATT+TGG | - | chr8.1:78444229-78444248 | MS.gene30401:CDS | 45.0% | |
| ! | ACTTTGGAGAAACACAGGTC+TGG | - | chr8.1:78444062-78444081 | MS.gene30401:CDS | 45.0% |
| ! | ATGTTGGGAGTGTGGCTAAA+TGG | + | chr8.1:78443710-78443729 | None:intergenic | 45.0% |
| ! | CAGGTCTGGGATTAATGCAT+TGG | - | chr8.1:78444076-78444095 | MS.gene30401:CDS | 45.0% |
| ! | CTTTGGAGAAACACAGGTCT+GGG | - | chr8.1:78444063-78444082 | MS.gene30401:CDS | 45.0% |
| ! | TGTTGGGAGTGTGGCTAAAT+GGG | + | chr8.1:78443709-78443728 | None:intergenic | 45.0% |
| !! | GCATTGGCTCTTAACAGTGA+TGG | - | chr8.1:78444092-78444111 | MS.gene30401:CDS | 45.0% |
| !! | TGTGGGTTTGAGTTGAGAGA+AGG | + | chr8.1:78443378-78443397 | None:intergenic | 45.0% |
| CAGAGTTGTGAGGCATGTGA+AGG | + | chr8.1:78443418-78443437 | None:intergenic | 50.0% | |
| GAGATGAGACTGTGCCAACA+TGG | + | chr8.1:78443812-78443831 | None:intergenic | 50.0% | |
| GGGACAGAACAATCAAGGTG+TGG | - | chr8.1:78443874-78443893 | MS.gene30401:CDS | 50.0% | |
| TGAGAGAAGGAACTGATGCG+AGG | + | chr8.1:78443365-78443384 | None:intergenic | 50.0% | |
| ! | TTTGGTGTGCAGTGGTTCTG+AGG | - | chr8.1:78444247-78444266 | MS.gene30401:CDS | 50.0% |
| !! | GTTTCCGATTTGGTGTGCAG+TGG | - | chr8.1:78444239-78444258 | MS.gene30401:CDS | 50.0% |
| TGCACATGGGTGCACCATGT+TGG | - | chr8.1:78443795-78443814 | MS.gene30401:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 78443276 | 78444481 | 78443276 | ID=MS.gene30401 |
| chr8.1 | mRNA | 78443276 | 78444481 | 78443276 | ID=MS.gene30401.t1;Parent=MS.gene30401 |
| chr8.1 | exon | 78443276 | 78444481 | 78443276 | ID=MS.gene30401.t1.exon1;Parent=MS.gene30401.t1 |
| chr8.1 | CDS | 78443276 | 78444481 | 78443276 | ID=cds.MS.gene30401.t1;Parent=MS.gene30401.t1 |
| Gene Sequence |
| Protein sequence |
