AlfalfaGEDB | MS.gene30562

M. sativa cultivar XinJiangDaYe / MS.gene30562

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30562.t1	XP_003606714.1	86.9	328	25	2	1	326	1	312	1.40E-108	402.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30562.t1	Q9LTH4	58.5	224	68	6	8	219	22	232	2.9e-54	213.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30562.t1	G7JCG7	86.9	328	25	2	1	326	1	312	1.0e-108	402.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene30562.t1	TF	GARP-G2-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene30562	MS.gene41134	PPI
MS.gene30562	MS.gene004004	PPI
MS.gene30562	MS.gene021153	PPI
MS.gene41134	MS.gene30562	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30562.t1	MTR_4g064730	89.634	328	16	2	1	326	1	312	4.33e-168	470
MS.gene30562.t1	MTR_7g089010	43.534	232	76	5	8	223	5	197	7.22e-43	150
MS.gene30562.t1	MTR_4g121020	66.176	68	23	0	126	193	106	173	4.47e-25	105
MS.gene30562.t1	MTR_4g121020	66.176	68	23	0	126	193	210	277	5.29e-25	105
MS.gene30562.t1	MTR_4g121020	66.176	68	23	0	126	193	210	277	5.50e-25	105
MS.gene30562.t1	MTR_2g034960	49.057	106	47	1	126	224	206	311	3.33e-24	103
MS.gene30562.t1	MTR_7g117705	42.553	141	78	3	130	267	190	330	2.38e-23	100
MS.gene30562.t1	MTR_3g106220	49.485	97	46	1	130	226	197	290	3.56e-23	100
MS.gene30562.t1	MTR_2g450070	69.492	59	18	0	130	188	212	270	1.57e-22	98.6
MS.gene30562.t1	MTR_2g450070	69.492	59	18	0	130	188	212	270	1.82e-22	98.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene30562.t1	AT3G46640	57.021	235	75	4	1	215	1	229	5.32e-78	241
MS.gene30562.t1	AT3G46640	57.021	235	75	4	1	215	1	229	5.32e-78	241
MS.gene30562.t1	AT3G46640	57.021	235	75	4	1	215	1	229	2.17e-77	240
MS.gene30562.t1	AT5G59570	54.331	254	91	8	11	250	25	267	3.85e-73	228
MS.gene30562.t1	AT5G59570	54.331	254	91	8	11	250	25	267	3.85e-73	228
MS.gene30562.t1	AT3G10760	47.596	208	80	5	8	210	5	188	3.40e-39	141
MS.gene30562.t1	AT5G05090	81.176	85	15	1	127	210	77	161	3.14e-38	137
MS.gene30562.t1	AT2G40970	72.340	94	17	1	126	210	100	193	4.39e-38	136
MS.gene30562.t1	AT3G16857	52.128	94	40	1	100	193	141	229	2.21e-24	103
MS.gene30562.t1	AT3G16857	52.128	94	40	1	100	193	211	299	2.52e-24	103

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Find 92 sgRNAs with CRISPR-Local

Find 99 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATGATCAGAAGAAGA+AGG	0.541009	4.2:+40547091	None:intergenic
AAAGAGGAGTGAGATCGTGG+AGG	0.675435	4.2:+40547617	None:intergenic
AAAGCGGAAGCGAGCTCCGG+TGG	0.521066	4.2:+40547580	None:intergenic
AACAAACTGAATGGGTGAAG+AGG	0.590082	4.2:-40547689	None:intergenic
AACAGACGAAGAACGTGTAA+CGG	0.639303	4.2:-40547662	MS.gene30562:CDS
AAGAGAGAGTGTGTTGCGAG+AGG	0.612371	4.2:+40547510	None:intergenic
AAGAGAGTACGGAGAGGCTC+CGG	0.421773	4.2:+40547547	None:intergenic
AAGCGGAAGCGAGCTCCGGT+GGG	0.636737	4.2:+40547581	None:intergenic
AATCATTCAAATGGAGGGCA+TGG	0.569625	4.2:-40546995	MS.gene30562:CDS
AATGCCGCCTATGATTGGTA+TGG	0.579585	4.2:-40546879	MS.gene30562:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGATGATCAGAAGAAGA+AGG	+	chr4.2:40547312-40547331	None:intergenic	30.0%
AATGCTAATCATTCAAATGG+AGG	-	chr4.2:40547399-40547418	MS.gene30562:CDS	30.0%
ACAGCTACATAAAAGATTTG+TGG	-	chr4.2:40547134-40547153	MS.gene30562:CDS	30.0%
ATGCTAATCATTCAAATGGA+GGG	-	chr4.2:40547400-40547419	MS.gene30562:CDS	30.0%
ATATGATGCATCATAGGGAT+TGG	-	chr4.2:40547625-40547644	MS.gene30562:CDS	35.0%
ATGAGAATGATTAGCAGAAC+CGG	+	chr4.2:40547370-40547389	None:intergenic	35.0%
GATTTGATGAGTGATTGTTC+CGG	+	chr4.2:40546929-40546948	None:intergenic	35.0%
AACAGACGAAGAACGTGTAA+CGG	-	chr4.2:40546738-40546757	MS.gene30562:CDS	40.0%
AATCATTCAAATGGAGGGCA+TGG	-	chr4.2:40547405-40547424	MS.gene30562:CDS	40.0%
AGATTCGGCTGTTAGAACAA+CGG	-	chr4.2:40547077-40547096	MS.gene30562:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	40546721	40547701	40546721	ID=MS.gene30562
chr4.2	mRNA	40546721	40547701	40546721	ID=MS.gene30562.t1;Parent=MS.gene30562
chr4.2	exon	40546721	40547701	40546721	ID=MS.gene30562.t1.exon1;Parent=MS.gene30562.t1
chr4.2	CDS	40546721	40547701	40546721	ID=cds.MS.gene30562.t1;Parent=MS.gene30562.t1

Gene Sequence

>MS.gene30562

ATGGGTGAAGAGGTTCGAACAGACGAAGAACGTGTAACGGAGTGGGAAAAGGGTCTCCCTAACCTCCACGATCTCACTCCTCTTTCCATGGCTTTGATCCCACCGGAGCTCGCTTCCGCTTTCAGCATCTCCCCGGAGCCTCTCCGTACTCTCTTCGACGTCAACCGCGCCTCTCGCAACACACTCTCTCTTCTCCGAAGCAACTCCGGAACAATCACTCATCAAATCAATCAACCCGTGTCCAGCGAAGTAGAAGACGTTGAAGAAGACGAAGAACCCGAGCGAGATGGATCAGGTTCGGATTCAAGAAAACATCGAAAAATAGATTCTGTTACAGAGGAAGTGGAAGCTGAAGCAGATTCGGCTGTTAGAACAACGGAGACGATAAAAAGGCCGAGGTTGGTGTGGACCCCACAGCTACATAAAAGATTTGTGGATGTTGTTGCTCATCTTGGGATAAAGAACGCGGTTCCGAAAACGATTATGCAGTTGATGAATGTTGAAGGATTAACAAGAGAAAATGTTGCTAGTCATTTGCAGAAATATCGTCTTTATTTGAAGAGAATGCAAGGGCTTTCAAATGATGCACCTTCTTCTTCTGATCATCTTTTTGCTTCTACACCTGTGCCGCAGAGTTTGCATGAAACCGGTTCTGCTAATCATTCTCATTCACATTCAAATGCTAATCATTCAAATGGAGGGCATGGTAATGGACATGGGAATTCGCATTCTCATTCACATTCGCATCATTCTGTGACGATTCCTATGCCTTATCCACCACCACCTTCGACTATGATGTCAATGCCGCCTATGATTGGTATGGGACATCATCCACATGGGCATATGGGGATGAGTTTGCCTCCTCCTTCGGGTGGTTCTAGCTCTTATCGCTCGCATCCATTTAATATGATGCATCATAGGGATTGGCCTCCGAATCCACATTCTCATCCTCACATGTCTTCCAATGATAGTAATAAATAA

Protein sequence

>MS.gene30562.t1

MGEEVRTDEERVTEWEKGLPNLHDLTPLSMALIPPELASAFSISPEPLRTLFDVNRASRNTLSLLRSNSGTITHQINQPVSSEVEDVEEDEEPERDGSGSDSRKHRKIDSVTEEVEAEADSAVRTTETIKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNDAPSSSDHLFASTPVPQSLHETGSANHSHSHSNANHSNGGHGNGHGNSHSHSHSHHSVTIPMPYPPPPSTMMSMPPMIGMGHHPHGHMGMSLPPPSGGSSSYRSHPFNMMHHRDWPPNPHSHPHMSSNDSNK