AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene30875

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30875.t1 MTR_1g067370 99.544 439 2 0 1 439 1 439 0.0 893
MS.gene30875.t1 MTR_7g100360 84.634 423 58 2 24 439 22 444 0.0 679
MS.gene30875.t1 MTR_3g080830 54.545 418 182 5 26 439 24 437 2.28e-158 454
MS.gene30875.t1 MTR_1g025450 55.034 149 66 1 26 173 301 449 1.29e-38 147
MS.gene30875.t1 MTR_1g061930 39.669 121 70 3 321 438 1 121 2.59e-21 90.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30875.t1 AT5G18520 76.244 442 100 3 1 439 1 440 0.0 687
MS.gene30875.t1 AT3G09570 77.830 424 91 2 19 439 16 439 0.0 663
MS.gene30875.t1 AT5G02630 61.343 432 160 4 4 433 2 428 0.0 534
MS.gene30875.t1 AT5G42090 54.808 416 185 2 27 439 24 439 1.98e-164 470

Find 114 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGATTGTTATTCCTCTTC+AGG 0.246602 1.2:-50657654 MS.gene30875:CDS
TGTTATTCCTCTTCAGGTTT+TGG 0.265822 1.2:-50657648 MS.gene30875:CDS
GTAACCCAATCCTTGATAAA+AGG 0.306429 1.2:+50657590 None:intergenic
ATGATCCTCTTAGAGAAATT+CGG 0.313606 1.2:-50658379 MS.gene30875:CDS
GCAACACGACACGGATAAAC+TGG 0.334981 1.2:+50657756 None:intergenic
AATTTAGCTTCCGTTGTAAT+CGG 0.341534 1.2:-50657623 MS.gene30875:CDS
TTTGATCTCAGCCGTTGATT+GGG 0.345915 1.2:+50658432 None:intergenic
ATTTGATCTCAGCCGTTGAT+TGG 0.359823 1.2:+50658431 None:intergenic
GACGGTGGTGATCACCGTTT+TGG 0.361569 1.2:+50658492 None:intergenic
TGATCCTCTTAGAGAAATTC+GGG 0.363020 1.2:-50658378 MS.gene30875:CDS
GGATTGGGTTACTTGGAATC+AGG 0.378170 1.2:-50657579 MS.gene30875:CDS
TCCGTTGTAATCGGCGAAAC+TGG 0.378237 1.2:-50657614 MS.gene30875:CDS
TTATCAAGGATTGGGTTACT+TGG 0.387701 1.2:-50657586 MS.gene30875:CDS
GAAGCGATTCTTCGCTTAAG+AGG 0.412419 1.2:+50658263 None:intergenic
GCCATGGAAACGGAGGTTTC+CGG 0.427556 1.2:+50658067 None:intergenic
GTCATTGTATTGATCGGAAC+TGG 0.430766 1.2:-50657725 MS.gene30875:CDS
GAACTCATTCGGAGAAGTTA+CGG 0.433751 1.2:+50658114 None:intergenic
CTCTTCTCCGTCGTGTACTT+CGG 0.437135 1.2:-50657959 MS.gene30875:CDS
AACTCATTCGGAGAAGTTAC+GGG 0.446315 1.2:+50658115 None:intergenic
AAGCTGCGGAGGTTGCTCTC+AGG 0.452635 1.2:-50657220 MS.gene30875:CDS
CCATTACTGCTTATAAGTAT+AGG 0.453867 1.2:-50657358 MS.gene30875:CDS
AGACGGAGGAAACGGCGATC+TGG 0.455414 1.2:+50658335 None:intergenic
AGCGACGGAGACGGAGGAAA+CGG 0.456624 1.2:+50658327 None:intergenic
GAGGATCATGGGTCGGGTAT+CGG 0.458332 1.2:+50658393 None:intergenic
GATTTAATCGACCATACAAT+AGG 0.463888 1.2:+50657512 None:intergenic
TATGGTCGATTAAATCGCTT+AGG 0.480587 1.2:-50657505 MS.gene30875:CDS
AAGAAGAGACTGAACTCATT+CGG 0.487216 1.2:+50658103 None:intergenic
CTCTAAGAGGATCATGGGTC+GGG 0.488515 1.2:+50658387 None:intergenic
ATAACAAACGCTCCGTTCAC+CGG 0.489572 1.2:-50657904 MS.gene30875:CDS
TTGATCTCAGCCGTTGATTG+GGG 0.493890 1.2:+50658433 None:intergenic
GATCTGGATGTGGCCGGTGT+GGG 0.498956 1.2:+50658351 None:intergenic
TTTGCAAGAAAGGGAGAAGA+AGG 0.498982 1.2:-50657681 MS.gene30875:CDS
GAATTTCTCTAAGAGGATCA+TGG 0.499199 1.2:+50658381 None:intergenic
AGCTGCGGAGGTTGCTCTCA+GGG 0.500321 1.2:-50657219 MS.gene30875:CDS
ATCCCATCCATGTGGAGTAC+CGG 0.501308 1.2:+50657796 None:intergenic
CCTATACTTATAAGCAGTAA+TGG 0.502591 1.2:+50657358 None:intergenic
TTGTGTTGCGGCGGCAGCGA+CGG 0.505110 1.2:+50658312 None:intergenic
TTCACCGTCATTGTATTGAT+CGG 0.507639 1.2:-50657731 MS.gene30875:CDS
GGTTAGCAATCTTGCTGAGG+AGG 0.512540 1.2:-50657333 MS.gene30875:CDS
GAATCGAGAACGCAGAAGCT+AGG 0.512869 1.2:+50658211 None:intergenic
AATCCGAGACGAGATGGATC+GGG 0.515601 1.2:+50658289 None:intergenic
GGTACGAACCGCCATGGAAA+CGG 0.516857 1.2:+50658057 None:intergenic
GAATCCGAGACGAGATGGAT+CGG 0.518346 1.2:+50658288 None:intergenic
TAAACCCGAATTTCTCTAAG+AGG 0.518642 1.2:+50658374 None:intergenic
CCGCCATGAGGAGATGGATC+CGG 0.520442 1.2:+50657885 None:intergenic
GAACGGTTAAACGCCGCAGT+TGG 0.520553 1.2:+50658142 None:intergenic
ACCGGAAACCTCCGTTTCCA+TGG 0.528671 1.2:-50658068 MS.gene30875:CDS
CGATCTGGATGTGGCCGGTG+TGG 0.534477 1.2:+50658350 None:intergenic
TCACCGGTACTCCACATGGA+TGG 0.539403 1.2:-50657799 MS.gene30875:CDS
CGGTTAAACGCCGCAGTTGG+AGG 0.540690 1.2:+50658145 None:intergenic
AGGAAGAATCCGAGACGAGA+TGG 0.541758 1.2:+50658283 None:intergenic
TCTCTAAGAGGATCATGGGT+CGG 0.545583 1.2:+50658386 None:intergenic
AGGAAACGGCGATCTGGATG+TGG 0.546544 1.2:+50658341 None:intergenic
GAGAAGTTACGGGGTAAGAA+CGG 0.552674 1.2:+50658125 None:intergenic
GTCCGTGATTATCTTTCCGC+CGG 0.554079 1.2:-50658010 MS.gene30875:CDS
GAAGTGCCGCCATGAGGAGA+TGG 0.555399 1.2:+50657879 None:intergenic
TTAAACGCCGCAGTTGGAGG+TGG 0.561889 1.2:+50658148 None:intergenic
GGCATCGAGGTTGAAAAGCT+CGG 0.563320 1.2:+50658036 None:intergenic
ATGGTCGATTAAATCGCTTA+GGG 0.564486 1.2:-50657504 MS.gene30875:CDS
CACCGGTACTCCACATGGAT+GGG 0.565762 1.2:-50657798 MS.gene30875:CDS
AAATTCGCCAAAACCTGAAG+AGG 0.566176 1.2:+50657641 None:intergenic
AAATACTCATTCTTCTCCAC+CGG 0.566222 1.2:+50657266 None:intergenic
TTACTGCTTATAAGTATAGG+TGG 0.566517 1.2:-50657355 MS.gene30875:CDS
AGATGGATCGGGTTGTGTTG+CGG 0.567742 1.2:+50658300 None:intergenic
AAACATTATGTCAAGGTCAC+CGG 0.568178 1.2:-50657815 MS.gene30875:CDS
CTTGACATAATGTTTATCCT+CGG 0.571094 1.2:+50657823 None:intergenic
CGGTGAAAAGCAACACGACA+CGG 0.571831 1.2:+50657747 None:intergenic
AATCGAGAACGCAGAAGCTA+GGG 0.571969 1.2:+50658212 None:intergenic
GGAAAGATAATCACGGACTC+CGG 0.572809 1.2:+50658015 None:intergenic
GAGGAGATGGATCCGGTGAA+CGG 0.573260 1.2:+50657892 None:intergenic
GGAGGAAGAAGAAGCTGCGG+AGG 0.577819 1.2:-50657231 MS.gene30875:CDS
AGACGGTAACTGAGTTTGAC+CGG 0.579031 1.2:+50657991 None:intergenic
TAACTTGATTTGCGCCGCCG+AGG 0.580116 1.2:-50657840 MS.gene30875:CDS
AATTTCTCTAAGAGGATCAT+GGG 0.580478 1.2:+50658382 None:intergenic
TCACCGGATCCATCTCCTCA+TGG 0.581328 1.2:-50657888 MS.gene30875:CDS
AGACCGATGGAAAAGCTGCT+AGG 0.583599 1.2:-50657472 MS.gene30875:CDS
GTTAGCAATCTTGCTGAGGA+GGG 0.583606 1.2:-50657332 MS.gene30875:CDS
ACCAGTTTCGCCGATTACAA+CGG 0.586450 1.2:+50657613 None:intergenic
CTTCTTCGCTAACTGTGCAC+CGG 0.590271 1.2:-50658086 MS.gene30875:CDS
GATCATGGGTCGGGTATCGG+AGG 0.594584 1.2:+50658396 None:intergenic
AAGCTCGGTACGAACCGCCA+TGG 0.596283 1.2:+50658051 None:intergenic
AACGGCGATCTGGATGTGGC+CGG 0.598066 1.2:+50658345 None:intergenic
TGCGGCGGCAGCGACGGAGA+CGG 0.602908 1.2:+50658318 None:intergenic
TACTGCTTATAAGTATAGGT+GGG 0.603318 1.2:-50657354 MS.gene30875:CDS
GGTATCGGAGGTTATTGTGA+GGG 0.605524 1.2:+50658408 None:intergenic
TTGGAGGTGGTGAAAGATCA+CGG 0.606308 1.2:+50658161 None:intergenic
AAGGTCACCGGTACTCCACA+TGG 0.613539 1.2:-50657803 MS.gene30875:CDS
TGATCTCAGCCGTTGATTGG+GGG 0.614677 1.2:+50658434 None:intergenic
TTGTATTGATCGGAACTGGA+TGG 0.615956 1.2:-50657721 MS.gene30875:CDS
CGAGGATAAACATTATGTCA+AGG 0.627926 1.2:-50657822 MS.gene30875:CDS
GGCGGCAGCGACGGAGACGG+AGG 0.628686 1.2:+50658321 None:intergenic
TGAGGAGGAAGAAGAAGCTG+CGG 0.630700 1.2:-50657234 MS.gene30875:CDS
GAGAAGAGAAAGAACAGAGA+CGG 0.631076 1.2:+50657974 None:intergenic
CAACCCGATCCATCTCGTCT+CGG 0.633761 1.2:-50658292 MS.gene30875:CDS
AGGGAAACCTCAAAGACCGA+TGG 0.641237 1.2:-50657485 MS.gene30875:CDS
GACATAATGTTTATCCTCGG+CGG 0.647292 1.2:+50657826 None:intergenic
TGGATCGGGTTGTGTTGCGG+CGG 0.650087 1.2:+50658303 None:intergenic
TCTTTCACCACCTCCAACTG+CGG 0.654408 1.2:-50658155 MS.gene30875:CDS
TCAACAGAAGTGCCGCCATG+AGG 0.664003 1.2:+50657873 None:intergenic
AATCACGGACTCCGGCATCG+AGG 0.665196 1.2:+50658023 None:intergenic
GGGTATCGGAGGTTATTGTG+AGG 0.669465 1.2:+50658407 None:intergenic
GTGGGTTAGCAATCTTGCTG+AGG 0.670293 1.2:-50657336 MS.gene30875:CDS
GGAAACCTCCGTTTCCATGG+CGG 0.672147 1.2:-50658065 MS.gene30875:CDS
AGTTCCGATCAATACAATGA+CGG 0.676682 1.2:+50657727 None:intergenic
AAGAGAACATCCCATCCATG+TGG 0.690008 1.2:+50657788 None:intergenic
AAATTCGGGTTTACCCACAC+CGG 0.690247 1.2:-50658364 MS.gene30875:CDS
GACCGGCGGAAAGATAATCA+CGG 0.713828 1.2:+50658008 None:intergenic
ACGAACCGCCATGGAAACGG+AGG 0.722339 1.2:+50658060 None:intergenic
ACTCATTCGGAGAAGTTACG+GGG 0.726459 1.2:+50658116 None:intergenic
GAGAAAACCGAAGTACACGA+CGG 0.734771 1.2:+50657952 None:intergenic
CCGGATCCATCTCCTCATGG+CGG 0.735489 1.2:-50657885 MS.gene30875:CDS
GATTGTGATGAGTGAAACGA+CGG 0.759491 1.2:+50658474 None:intergenic
CGGTAACTGAGTTTGACCGG+CGG 0.781047 1.2:+50657994 None:intergenic
TGTGATGAGTGAAACGACGG+TGG 0.807665 1.2:+50658477 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATCATTTTTCCTATTGTA+TGG - chr1.2:50658172-50658191 MS.gene30875:CDS 25.0%
!!! CAGTTTTACATTGTTGTTAT+CGG - chr1.2:50658273-50658292 MS.gene30875:CDS 25.0%
ATGATCCTCTTAGAGAAATT+CGG - chr1.2:50657316-50657335 MS.gene30875:CDS 30.0%
CCATTACTGCTTATAAGTAT+AGG - chr1.2:50658337-50658356 MS.gene30875:CDS 30.0%
CCTATACTTATAAGCAGTAA+TGG + chr1.2:50658340-50658359 None:intergenic 30.0%
CTTGACATAATGTTTATCCT+CGG + chr1.2:50657875-50657894 None:intergenic 30.0%
GATTTAATCGACCATACAAT+AGG + chr1.2:50658186-50658205 None:intergenic 30.0%
TACTGCTTATAAGTATAGGT+GGG - chr1.2:50658341-50658360 MS.gene30875:CDS 30.0%
TTACTGCTTATAAGTATAGG+TGG - chr1.2:50658340-50658359 MS.gene30875:CDS 30.0%
! AATTTAGCTTCCGTTGTAAT+CGG - chr1.2:50658072-50658091 MS.gene30875:CDS 30.0%
! AATTTCTCTAAGAGGATCAT+GGG + chr1.2:50657316-50657335 None:intergenic 30.0%
! CATGTTTTACATGTTTATGC+CGG - chr1.2:50658410-50658429 MS.gene30875:CDS 30.0%
! TATGATTGTTATTCCTCTTC+AGG - chr1.2:50658041-50658060 MS.gene30875:CDS 30.0%
AAACATTATGTCAAGGTCAC+CGG - chr1.2:50657880-50657899 MS.gene30875:CDS 35.0%
AAATACTCATTCTTCTCCAC+CGG + chr1.2:50658432-50658451 None:intergenic 35.0%
AAGAAGAGACTGAACTCATT+CGG + chr1.2:50657595-50657614 None:intergenic 35.0%
AGTTCCGATCAATACAATGA+CGG + chr1.2:50657971-50657990 None:intergenic 35.0%
ATGGTCGATTAAATCGCTTA+GGG - chr1.2:50658191-50658210 MS.gene30875:CDS 35.0%
CGAGGATAAACATTATGTCA+AGG - chr1.2:50657873-50657892 MS.gene30875:CDS 35.0%
GTAACCCAATCCTTGATAAA+AGG + chr1.2:50658108-50658127 None:intergenic 35.0%
TAAACCCGAATTTCTCTAAG+AGG + chr1.2:50657324-50657343 None:intergenic 35.0%
TATGGTCGATTAAATCGCTT+AGG - chr1.2:50658190-50658209 MS.gene30875:CDS 35.0%
TGATCCTCTTAGAGAAATTC+GGG - chr1.2:50657317-50657336 MS.gene30875:CDS 35.0%
TTATCAAGGATTGGGTTACT+TGG - chr1.2:50658109-50658128 MS.gene30875:CDS 35.0%
TTCTCCCTTTCTTGCAAAAA+CGG + chr1.2:50658012-50658031 None:intergenic 35.0%
! GAATTTCTCTAAGAGGATCA+TGG + chr1.2:50657317-50657336 None:intergenic 35.0%
! TGAGTATTTTGTGCTTGATG+AGG - chr1.2:50658443-50658462 MS.gene30875:CDS 35.0%
! TGGTCCTTTTATCAAGGATT+GGG - chr1.2:50658101-50658120 MS.gene30875:CDS 35.0%
! TTCACCGTCATTGTATTGAT+CGG - chr1.2:50657964-50657983 MS.gene30875:CDS 35.0%
!! TCGCGAAGTTAACACTTTTT+AGG - chr1.2:50658250-50658269 MS.gene30875:CDS 35.0%
!! TGTTATTCCTCTTCAGGTTT+TGG - chr1.2:50658047-50658066 MS.gene30875:CDS 35.0%
AAATTCGCCAAAACCTGAAG+AGG + chr1.2:50658057-50658076 None:intergenic 40.0%
AACTCATTCGGAGAAGTTAC+GGG + chr1.2:50657583-50657602 None:intergenic 40.0%
ATTTGATCTCAGCCGTTGAT+TGG + chr1.2:50657267-50657286 None:intergenic 40.0%
GAACTCATTCGGAGAAGTTA+CGG + chr1.2:50657584-50657603 None:intergenic 40.0%
GACATAATGTTTATCCTCGG+CGG + chr1.2:50657872-50657891 None:intergenic 40.0%
GAGAAGAGAAAGAACAGAGA+CGG + chr1.2:50657724-50657743 None:intergenic 40.0%
GATTGTGATGAGTGAAACGA+CGG + chr1.2:50657224-50657243 None:intergenic 40.0%
TTTGCAAGAAAGGGAGAAGA+AGG - chr1.2:50658014-50658033 MS.gene30875:CDS 40.0%
! ATTCCTAGCAGCTTTTCCAT+CGG + chr1.2:50658229-50658248 None:intergenic 40.0%
! CGAAACTGGTCCTTTTATCA+AGG - chr1.2:50658095-50658114 MS.gene30875:CDS 40.0%
! CTGGTCCTTTTATCAAGGAT+TGG - chr1.2:50658100-50658119 MS.gene30875:CDS 40.0%
! GTATTTTGTGCTTGATGAGG+AGG - chr1.2:50658446-50658465 MS.gene30875:CDS 40.0%
! GTCATTGTATTGATCGGAAC+TGG - chr1.2:50657970-50657989 MS.gene30875:CDS 40.0%
! GTTTTACATGTTTATGCCGG+TGG - chr1.2:50658413-50658432 MS.gene30875:CDS 40.0%
! TTGTATTGATCGGAACTGGA+TGG - chr1.2:50657974-50657993 MS.gene30875:CDS 40.0%
! TTTGATCTCAGCCGTTGATT+GGG + chr1.2:50657266-50657285 None:intergenic 40.0%
!!! GAAGCCGTTTTTGCAAGAAA+GGG - chr1.2:50658005-50658024 MS.gene30875:CDS 40.0%
!!! TGAAGCCGTTTTTGCAAGAA+AGG - chr1.2:50658004-50658023 MS.gene30875:CDS 40.0%
AAGAGAACATCCCATCCATG+TGG + chr1.2:50657910-50657929 None:intergenic 45.0%
AATCGAGAACGCAGAAGCTA+GGG + chr1.2:50657486-50657505 None:intergenic 45.0%
ACTCATTCGGAGAAGTTACG+GGG + chr1.2:50657582-50657601 None:intergenic 45.0%
AGACGGTAACTGAGTTTGAC+CGG + chr1.2:50657707-50657726 None:intergenic 45.0%
ATAACAAACGCTCCGTTCAC+CGG - chr1.2:50657791-50657810 MS.gene30875:CDS 45.0%
CACAACAATCCCCCAATCAA+CGG - chr1.2:50657252-50657271 MS.gene30875:CDS 45.0%
GAAGCGATTCTTCGCTTAAG+AGG + chr1.2:50657435-50657454 None:intergenic 45.0%
GAGAAAACCGAAGTACACGA+CGG + chr1.2:50657746-50657765 None:intergenic 45.0%
GAGAAGTTACGGGGTAAGAA+CGG + chr1.2:50657573-50657592 None:intergenic 45.0%
GGAAAGATAATCACGGACTC+CGG + chr1.2:50657683-50657702 None:intergenic 45.0%
GGATTGGGTTACTTGGAATC+AGG - chr1.2:50658116-50658135 MS.gene30875:CDS 45.0%
GTTAGCAATCTTGCTGAGGA+GGG - chr1.2:50658363-50658382 MS.gene30875:CDS 45.0%
TTGATTGGGGGATTGTTGTG+AGG + chr1.2:50657252-50657271 None:intergenic 45.0%
TTGGAGGTGGTGAAAGATCA+CGG + chr1.2:50657537-50657556 None:intergenic 45.0%
! AAATTCGGGTTTACCCACAC+CGG - chr1.2:50657331-50657350 MS.gene30875:CDS 45.0%
! ACCAGTTTCGCCGATTACAA+CGG + chr1.2:50658085-50658104 None:intergenic 45.0%
! AGCTTTTCCATCGGTCTTTG+AGG + chr1.2:50658220-50658239 None:intergenic 45.0%
! GGTATCGGAGGTTATTGTGA+GGG + chr1.2:50657290-50657309 None:intergenic 45.0%
! GTCGTGTACTTCGGTTTTCT+CGG - chr1.2:50657745-50657764 MS.gene30875:CDS 45.0%
! TCTCTAAGAGGATCATGGGT+CGG + chr1.2:50657312-50657331 None:intergenic 45.0%
! TTGATCTCAGCCGTTGATTG+GGG + chr1.2:50657265-50657284 None:intergenic 45.0%
!!! ACTTCGGTTTTCTCGGTGTT+TGG - chr1.2:50657752-50657771 MS.gene30875:CDS 45.0%
!!! GGTTTTGTTGGATCTCGATG+AGG + chr1.2:50657465-50657484 None:intergenic 45.0%
AATCCGAGACGAGATGGATC+GGG + chr1.2:50657409-50657428 None:intergenic 50.0%
AGACCGATGGAAAAGCTGCT+AGG - chr1.2:50658223-50658242 MS.gene30875:CDS 50.0%
AGGAAGAATCCGAGACGAGA+TGG + chr1.2:50657415-50657434 None:intergenic 50.0%
AGGGAAACCTCAAAGACCGA+TGG - chr1.2:50658210-50658229 MS.gene30875:CDS 50.0%
ATCCCATCCATGTGGAGTAC+CGG + chr1.2:50657902-50657921 None:intergenic 50.0%
CGGTGAAAAGCAACACGACA+CGG + chr1.2:50657951-50657970 None:intergenic 50.0%
CTCTTCTCCGTCGTGTACTT+CGG - chr1.2:50657736-50657755 MS.gene30875:CDS 50.0%
CTTCTTCGCTAACTGTGCAC+CGG - chr1.2:50657609-50657628 MS.gene30875:CDS 50.0%
GAATCCGAGACGAGATGGAT+CGG + chr1.2:50657410-50657429 None:intergenic 50.0%
GAATCGAGAACGCAGAAGCT+AGG + chr1.2:50657487-50657506 None:intergenic 50.0%
GACCGGCGGAAAGATAATCA+CGG + chr1.2:50657690-50657709 None:intergenic 50.0%
GCAACACGACACGGATAAAC+TGG + chr1.2:50657942-50657961 None:intergenic 50.0%
GGTTAGCAATCTTGCTGAGG+AGG - chr1.2:50658362-50658381 MS.gene30875:CDS 50.0%
GTCCGTGATTATCTTTCCGC+CGG - chr1.2:50657685-50657704 MS.gene30875:CDS 50.0%
TCCGTTGTAATCGGCGAAAC+TGG - chr1.2:50658081-50658100 MS.gene30875:CDS 50.0%
TCTTTCACCACCTCCAACTG+CGG - chr1.2:50657540-50657559 MS.gene30875:CDS 50.0%
TGAGGAGGAAGAAGAAGCTG+CGG - chr1.2:50658461-50658480 MS.gene30875:CDS 50.0%
TGTGATGAGTGAAACGACGG+TGG + chr1.2:50657221-50657240 None:intergenic 50.0%
! AGATGGATCGGGTTGTGTTG+CGG + chr1.2:50657398-50657417 None:intergenic 50.0%
! CTCTAAGAGGATCATGGGTC+GGG + chr1.2:50657311-50657330 None:intergenic 50.0%
! GAGCTTTTCAACCTCGATGC+CGG - chr1.2:50657661-50657680 MS.gene30875:CDS 50.0%
! GGCATCGAGGTTGAAAAGCT+CGG + chr1.2:50657662-50657681 None:intergenic 50.0%
! TGATCTCAGCCGTTGATTGG+GGG + chr1.2:50657264-50657283 None:intergenic 50.0%
!! CGCAGAAGCTAGGGTTTTGT+TGG + chr1.2:50657477-50657496 None:intergenic 50.0%
!! GGGTATCGGAGGTTATTGTG+AGG + chr1.2:50657291-50657310 None:intergenic 50.0%
!! GTGGGTTAGCAATCTTGCTG+AGG - chr1.2:50658359-50658378 MS.gene30875:CDS 50.0%
AAGGTCACCGGTACTCCACA+TGG - chr1.2:50657892-50657911 MS.gene30875:CDS 55.0%
ACCGGAAACCTCCGTTTCCA+TGG - chr1.2:50657627-50657646 MS.gene30875:CDS 55.0%
AGGAAACGGCGATCTGGATG+TGG + chr1.2:50657357-50657376 None:intergenic 55.0%
CAACCCGATCCATCTCGTCT+CGG - chr1.2:50657403-50657422 MS.gene30875:CDS 55.0%
CACCGGTACTCCACATGGAT+GGG - chr1.2:50657897-50657916 MS.gene30875:CDS 55.0%
CGGTAACTGAGTTTGACCGG+CGG + chr1.2:50657704-50657723 None:intergenic 55.0%
GAACGGTTAAACGCCGCAGT+TGG + chr1.2:50657556-50657575 None:intergenic 55.0%
GAGGAGATGGATCCGGTGAA+CGG + chr1.2:50657806-50657825 None:intergenic 55.0%
GAGGATCATGGGTCGGGTAT+CGG + chr1.2:50657305-50657324 None:intergenic 55.0%
GCCATGGAAACGGAGGTTTC+CGG + chr1.2:50657631-50657650 None:intergenic 55.0%
GGAAACCTCCGTTTCCATGG+CGG - chr1.2:50657630-50657649 MS.gene30875:CDS 55.0%
GGGGGATTGTTGTGAGGATG+AGG + chr1.2:50657246-50657265 None:intergenic 55.0%
GGTACGAACCGCCATGGAAA+CGG + chr1.2:50657641-50657660 None:intergenic 55.0%
TCACCGGATCCATCTCCTCA+TGG - chr1.2:50657807-50657826 MS.gene30875:CDS 55.0%
TCACCGGTACTCCACATGGA+TGG - chr1.2:50657896-50657915 MS.gene30875:CDS 55.0%
TTAAACGCCGCAGTTGGAGG+TGG + chr1.2:50657550-50657569 None:intergenic 55.0%
! GACGGTGGTGATCACCGTTT+TGG + chr1.2:50657206-50657225 None:intergenic 55.0%
!! TAACTTGATTTGCGCCGCCG+AGG - chr1.2:50657855-50657874 MS.gene30875:CDS 55.0%
!! TCAACAGAAGTGCCGCCATG+AGG + chr1.2:50657825-50657844 None:intergenic 55.0%
AACGGCGATCTGGATGTGGC+CGG + chr1.2:50657353-50657372 None:intergenic 60.0%
AAGCTCGGTACGAACCGCCA+TGG + chr1.2:50657647-50657666 None:intergenic 60.0%
AAGCTGCGGAGGTTGCTCTC+AGG - chr1.2:50658475-50658494 MS.gene30875:CDS 60.0%
AATCACGGACTCCGGCATCG+AGG + chr1.2:50657675-50657694 None:intergenic 60.0%
ACGAACCGCCATGGAAACGG+AGG + chr1.2:50657638-50657657 None:intergenic 60.0%
AGACGGAGGAAACGGCGATC+TGG + chr1.2:50657363-50657382 None:intergenic 60.0%
AGCGACGGAGACGGAGGAAA+CGG + chr1.2:50657371-50657390 None:intergenic 60.0%
AGCTGCGGAGGTTGCTCTCA+GGG - chr1.2:50658476-50658495 MS.gene30875:CDS 60.0%
CCGCCATGAGGAGATGGATC+CGG + chr1.2:50657813-50657832 None:intergenic 60.0%
CCGGATCCATCTCCTCATGG+CGG - chr1.2:50657810-50657829 MS.gene30875:CDS 60.0%
CGGTTAAACGCCGCAGTTGG+AGG + chr1.2:50657553-50657572 None:intergenic 60.0%
GATCTGGATGTGGCCGGTGT+GGG + chr1.2:50657347-50657366 None:intergenic 60.0%
GGAGGAAGAAGAAGCTGCGG+AGG - chr1.2:50658464-50658483 MS.gene30875:CDS 60.0%
! TGGATCGGGTTGTGTTGCGG+CGG + chr1.2:50657395-50657414 None:intergenic 60.0%
!! GAAGTGCCGCCATGAGGAGA+TGG + chr1.2:50657819-50657838 None:intergenic 60.0%
!! GATCATGGGTCGGGTATCGG+AGG + chr1.2:50657302-50657321 None:intergenic 60.0%
CGATCTGGATGTGGCCGGTG+TGG + chr1.2:50657348-50657367 None:intergenic 65.0%
TTGTGTTGCGGCGGCAGCGA+CGG + chr1.2:50657386-50657405 None:intergenic 65.0%
TGCGGCGGCAGCGACGGAGA+CGG + chr1.2:50657380-50657399 None:intergenic 75.0%
! GGCGGCAGCGACGGAGACGG+AGG + chr1.2:50657377-50657396 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 50657199 50658518 50657199 ID=MS.gene30875
chr1.2 mRNA 50657199 50658518 50657199 ID=MS.gene30875.t1;Parent=MS.gene30875
chr1.2 exon 50657199 50658518 50657199 ID=MS.gene30875.t1.exon1;Parent=MS.gene30875.t1
chr1.2 CDS 50657199 50658518 50657199 ID=cds.MS.gene30875.t1;Parent=MS.gene30875.t1
Gene Sequence

>MS.gene30875

ATGGCCAAAACGGTGATCACCACCGTCGTTTCACTCATCACAATCCTCATCCTCACAACAATCCCCCAATCAACGGCTGAGATCAAATCCCTCACAATAACCTCCGATACCCGACCCATGATCCTCTTAGAGAAATTCGGGTTTACCCACACCGGCCACATCCAGATCGCCGTTTCCTCCGTCTCCGTCGCTGCCGCCGCAACACAACCCGATCCATCTCGTCTCGGATTCTTCCTCTTAAGCGAAGAATCGCTTCTACAAGTCCTCATCGAGATCCAACAAAACCCTAGCTTCTGCGTTCTCGATTCACATTACATCACGCGTTTATTCACTTTCCGTGATCTTTCACCACCTCCAACTGCGGCGTTTAACCGTTCTTACCCCGTAACTTCTCCGAATGAGTTCAGTCTCTTCTTCGCTAACTGTGCACCGGAAACCTCCGTTTCCATGGCGGTTCGTACCGAGCTTTTCAACCTCGATGCCGGAGTCCGTGATTATCTTTCCGCCGGTCAAACTCAGTTACCGTCTCTGTTCTTTCTCTTCTCCGTCGTGTACTTCGGTTTTCTCGGTGTTTGGTTCTATGTTTGTTACAATAACAAACGCTCCGTTCACCGGATCCATCTCCTCATGGCGGCACTTCTGTTGATGAAAGCTCTTAACTTGATTTGCGCCGCCGAGGATAAACATTATGTCAAGGTCACCGGTACTCCACATGGATGGGATGTTCTCTTTTACATTTTCCAGTTTATCCGTGTCGTGTTGCTTTTCACCGTCATTGTATTGATCGGAACTGGATGGTCGTTTTTGAAGCCGTTTTTGCAAGAAAGGGAGAAGAAGGTGCTTATGATTGTTATTCCTCTTCAGGTTTTGGCGAATTTAGCTTCCGTTGTAATCGGCGAAACTGGTCCTTTTATCAAGGATTGGGTTACTTGGAATCAGGTTTTCTTGCTTGTTGATATCATTTGTTGTTGTGCAATCATTTTTCCTATTGTATGGTCGATTAAATCGCTTAGGGAAACCTCAAAGACCGATGGAAAAGCTGCTAGGAATCTCGCGAAGTTAACACTTTTTAGGCAGTTTTACATTGTTGTTATCGGCTATCTTTACTTCACACGCATTGTTGTTTTTGCTCTCAAGACCATTACTGCTTATAAGTATAGGTGGGTTAGCAATCTTGCTGAGGAGGGTGCTAGTCTTGCATTTTACATTGTCATGTTTTACATGTTTATGCCGGTGGAGAAGAATGAGTATTTTGTGCTTGATGAGGAGGAAGAAGAAGCTGCGGAGGTTGCTCTCAGGGAAGAAGAGTTTGAGCTTTGA
Protein sequence

>MS.gene30875.t1

MAKTVITTVVSLITILILTTIPQSTAEIKSLTITSDTRPMILLEKFGFTHTGHIQIAVSSVSVAAAATQPDPSRLGFFLLSEESLLQVLIEIQQNPSFCVLDSHYITRLFTFRDLSPPPTAAFNRSYPVTSPNEFSLFFANCAPETSVSMAVRTELFNLDAGVRDYLSAGQTQLPSLFFLFSVVYFGFLGVWFYVCYNNKRSVHRIHLLMAALLLMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEREKKVLMIVIPLQVLANLASVVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIKSLRETSKTDGKAARNLAKLTLFRQFYIVVIGYLYFTRIVVFALKTITAYKYRWVSNLAEEGASLAFYIVMFYMFMPVEKNEYFVLDEEEEEAAEVALREEEFEL