AlfalfaGEDB | MS.gene31129

M. sativa cultivar XinJiangDaYe / MS.gene31129

KEGG: -
GO: -
PFAM: PF03514.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31129.t1	XP_013465418.1	88.1	656	49	2	1	627	1	656	0.00E+00	1150.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31129.t1	Q9XE58	38.5	755	326	13	7	627	17	767	5.0e-135	483.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31129.t1	A0A072VDE5	88.1	656	49	2	1	627	1	656	0.0e+00	1150.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene31129.t1	TF	GRAS

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052089	MS.gene31129	0.802904	4.50E-49	-1.69E-46
MS.gene052090	MS.gene31129	0.915279	7.11E-85	-1.69E-46
MS.gene052091	MS.gene31129	0.855529	5.94E-62	-1.69E-46
MS.gene055549	MS.gene31129	0.801309	9.57E-49	-1.69E-46
MS.gene055550	MS.gene31129	0.806121	9.59E-50	-1.69E-46
MS.gene055551	MS.gene31129	0.800534	1.38E-48	-1.69E-46
MS.gene058629	MS.gene31129	0.805581	1.25E-49	-1.69E-46
MS.gene058630	MS.gene31129	0.803841	2.88E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31129.t1	MTR_2g097467	90.244	656	35	2	1	627	1	656	0.0	1191
MS.gene31129.t1	MTR_2g097473	87.652	656	52	2	1	627	1	656	0.0	1166
MS.gene31129.t1	MTR_2g097463	79.452	657	105	2	1	627	1	657	0.0	1056
MS.gene31129.t1	MTR_4g064200	54.873	667	246	13	1	627	1	652	0.0	685
MS.gene31129.t1	MTR_7g062120	42.628	685	285	12	43	627	66	742	4.04e-178	523
MS.gene31129.t1	MTR_4g064160	53.778	450	189	6	190	627	244	686	6.57e-167	493
MS.gene31129.t1	MTR_4g064120	44.795	634	282	16	37	627	20	628	3.04e-165	486
MS.gene31129.t1	MTR_4g064150	42.708	672	289	18	37	627	79	735	1.76e-163	486
MS.gene31129.t1	MTR_4g064180	44.637	634	283	16	37	627	20	628	3.53e-162	479
MS.gene31129.t1	MTR_2g097410	51.461	445	210	3	189	627	299	743	7.96e-162	481

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31129.t1	AT2G29060	44.079	608	303	14	49	626	56	656	1.37e-167	493
MS.gene31129.t1	AT5G59450	44.822	589	262	12	53	627	61	600	1.05e-165	487
MS.gene31129.t1	AT2G29060	42.326	645	298	16	49	626	56	693	1.14e-162	482
MS.gene31129.t1	AT2G37650	42.065	649	294	13	49	626	65	702	1.26e-160	477
MS.gene31129.t1	AT2G37650	42.065	649	294	13	49	626	77	714	2.30e-160	477
MS.gene31129.t1	AT1G07530	49.675	461	220	4	179	627	307	767	2.63e-156	468
MS.gene31129.t1	AT3G46600	51.562	448	194	6	188	627	117	549	3.09e-153	453
MS.gene31129.t1	AT3G46600	51.562	448	194	6	188	627	149	581	3.92e-153	454
MS.gene31129.t1	AT3G46600	55.946	370	161	1	260	627	4	373	1.89e-150	439
MS.gene31129.t1	AT2G29065	42.434	608	309	13	50	627	34	630	3.96e-147	440

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Find 133 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATTCCTGCAACATGCA+TGG	0.559801	2.4:+6328426	None:intergenic
AAACCAAGAGGCTGATATGA+TGG	0.515320	2.4:+6327616	None:intergenic
AAACTTTCATTAAGACCTGG+TGG	0.664266	2.4:-6327415	MS.gene31129:CDS
AAAGGGTGGAGGAAACTGGA+CGG	0.662270	2.4:-6327333	MS.gene31129:CDS
AAATCAATGTGCACAAGCTG+TGG	0.661819	2.4:-6327773	MS.gene31129:CDS
AAATCTTGCAGAAAGGTGTT+TGG	0.378133	2.4:+6328630	None:intergenic
AACACTAAAATCTTGCAGAA+AGG	0.557457	2.4:+6328623	None:intergenic
AACCAAAGCAATGGTGAAGA+AGG	0.500696	2.4:-6326795	MS.gene31129:CDS
AACTTCCATTGGCAACTCCA+TGG	0.540581	2.4:+6327083	None:intergenic
AAGAGTCGAATTCGACGACA+TGG	0.616744	2.4:+6328238	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACACTAAAATCTTGCAGAA+AGG	+	chr2.4:6326713-6326732	None:intergenic	30.0%
AGAAAACTTTCATTAAGACC+TGG	-	chr2.4:6327915-6327934	MS.gene31129:CDS	30.0%
AGATTCATATGAGTTATCAG+TGG	+	chr2.4:6327064-6327083	None:intergenic	30.0%
ATCTACTACGAAAAATGTTG+CGG	-	chr2.4:6327515-6327534	MS.gene31129:CDS	30.0%
GCAATGAAGTTGTATTCAAA+TGG	+	chr2.4:6328059-6328078	None:intergenic	30.0%
TAAAGGAGTTTGTAGTTGTA+TGG	+	chr2.4:6327124-6327143	None:intergenic	30.0%
TTAGCTCATTACTTTGCTAA+TGG	-	chr2.4:6327666-6327685	MS.gene31129:CDS	30.0%
TTTGTATGCTTTATCTGCTT+GGG	-	chr2.4:6328628-6328647	MS.gene31129:CDS	30.0%
AAACTTTCATTAAGACCTGG+TGG	-	chr2.4:6327918-6327937	MS.gene31129:CDS	35.0%
AAGTCCTTCTATGATGTTCT+TGG	-	chr2.4:6326949-6326968	MS.gene31129:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	6326694	6328661	6326694	ID=MS.gene31129
chr2.4	mRNA	6326694	6328661	6326694	ID=MS.gene31129.t1;Parent=MS.gene31129
chr2.4	exon	6328098	6328661	6328098	ID=MS.gene31129.t1.exon1;Parent=MS.gene31129.t1
chr2.4	CDS	6328098	6328661	6328098	ID=cds.MS.gene31129.t1;Parent=MS.gene31129.t1
chr2.4	exon	6326694	6328013	6326694	ID=MS.gene31129.t1.exon2;Parent=MS.gene31129.t1
chr2.4	CDS	6326694	6328013	6326694	ID=cds.MS.gene31129.t1;Parent=MS.gene31129.t1

Gene Sequence

>MS.gene31129

ATGCTTTCTCCAAACACCTTTCTGCAAGATTTTAGTGTTCCAAACTCGGTAAACCAAGTAACAAATGGGTTTGAGTTAGAAGATTCATCATCTTCACCTTCTTCTGGCACAAGCTCAAATGGAGAATCCTTGGAAATGACAAGATATTCCAATAACATCCTAAGATACATAAGTGACATCCTCATGGATGAAGAAGATGACTTGGAGCAAAAACCATGCATGTTGCAGGAATGTTTAAGACTTCAGGCTGCTGAAAAGTCCTTCTATGATGTTCTTGGCCATAACCATCCATCCCCAAATGGTAGCACTGACCAAGATGGAAACTTCGATCGTGCTGCTAGTTTTGAGAGAAATGGCAGCAGCTGCACCACTGATAACTCATATGAATCTAACTGGGTCAACCATGTCGTCGAATTCGACTCTTCTTCCATACAACTACAAACTCCTTTAATAGAAAAAAACTACTATGACTTGACAGAAGCTGATCCAGTTGTCATCGAGACACGGGGTGCTAACCATTGTCACAACGGAACTTGGAGTTGGAATGACATTCAGCCAGTGACGGTGGAAGAAGTTTCACCTTCAACAGTACAAGAAAAAAGAAGTCATAAGATGGATAATGATAATGATACTTGTAATGAATAACAGGGAAGAGGTAGCAAGGTTTCAGCTATTTTCTCTGATGAATTAGAGCCACCAGAGATTTTAGATGAGGTGCTGCTTTATCAGACAGGAAAGACTCTCACTCAACACCAACAAGCATCTTATAATTTTGATTCAGGAGGAAAGGCAAAGGAAACACATTCGCGTTTGAAGAAAGCATCTACTACGAAAAATGTTGCGGCTGTTGATTTGTGGACCATGCTAAATCAATGTGCACAAGCTGTGGCGAGCTACGATCAAAGGAATACAGATGAGCTACTCAAACAGATTAGGCAACACTCTTCGCCTTTTGGCAATGGACTCCAACGTTTAGCTCATTACTTTGCTAATGGTCTTGAGATAAGATTGGCTGCTGAGACGCCATCATATCAGCCTCTTGGTTTGGCAACTGCTGGAGATATGTTGAAAGCTTACAAACTATTTGTTACTGCGTCTCCTTTGCAGAGAATGACAAATGCTTTGCTAACCAAAACGATTTTCGAAATAGTGAAGAACGAGAGCAGCGTTCATGTTATTGATTTTGGAATTTTCTATGGTTTCCAGTGGCCGTGCCTCGTCAGAAAACTTTCATTAAGACCTGGTGGTCCTCCAAAGCTTCGAATTACAGGAATTGAGCTTCCTCAGCCAGGATTTAGACCTGCAGAAAGGGTGGAGGAAACTGGACGGCGTCTAGCAAACTACTGCAAGAAGTTCAATGTACCATTTGAATACAACTTCATTGCACAGAGATGGGAAACCATCCGTCTCAAGGATCTCAAGATAGACAGGAATGAAATAACTCTTGTTAGCTGTTTGTACAGACTGAAGAACCTTCCTGATGAAACTGTGGCATTGAATTGTCCAAGAGAAGCTGTGTTGAAGCTGATCAGGAAGATTAATCCAAAAGTCTTCTTCCATGGAGTTGCCAATGGAAGTTATAGCGCACCGTTTTTCCTGACTCGGTTTAAGGAAGCACTCTATCACTTCTCATCGCTGTTTGATATGTTTGAGGCTAACGTGCCTCGTGAAGACACGCAGAGGTCGATGCTTGAGAGAGGGTTGTTTGGAAGGGATGCTATAAATGTTATAGCTTGTGAGGGAGCAGAAAGGGTTGAAAGGCCTGAGACGTACAAGCAGTGGCAGGTCAGGAACAAGAGAGCTGGGTTCAAGCAAATCAGGTTGGATTCTGATTTGGTGAATGAAACCAAAGCAATGGTGAAGAAGGAATACCATAATGATTTTGTAGTCGATGTGGATGGTAAGTGGGTTTTAAAGGGATGGAAAGGACGCATTTTGTATGCTTTATCTGCTTGGGTTCCTGCTTAA

Protein sequence

>MS.gene31129.t1

MLSPNTFLQDFSVPNSVNQVTNGFELEDSSSSPSSGTSSNGESLEMTRYSNNILRYISDILMDEEDDLEQKPCMLQECLRLQAAEKSFYDVLGHNHPSPNGSTDQDGNFDRAASFERNGSSCTTDNSYESNWVNHVVEFDSSSIQLQTPLIEKNYYDLTEADPVVIETRGANHCHNGTWSWNDIQPVTGRGSKVSAIFSDELEPPEILDEVLLYQTGKTLTQHQQASYNFDSGGKAKETHSRLKKASTTKNVAAVDLWTMLNQCAQAVASYDQRNTDELLKQIRQHSSPFGNGLQRLAHYFANGLEIRLAAETPSYQPLGLATAGDMLKAYKLFVTASPLQRMTNALLTKTIFEIVKNESSVHVIDFGIFYGFQWPCLVRKLSLRPGGPPKLRITGIELPQPGFRPAERVEETGRRLANYCKKFNVPFEYNFIAQRWETIRLKDLKIDRNEITLVSCLYRLKNLPDETVALNCPREAVLKLIRKINPKVFFHGVANGSYSAPFFLTRFKEALYHFSSLFDMFEANVPREDTQRSMLERGLFGRDAINVIACEGAERVERPETYKQWQVRNKRAGFKQIRLDSDLVNETKAMVKKEYHNDFVVDVDGKWVLKGWKGRILYALSAWVPA