Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31150.t1 | XP_013465396.1 | 90.7 | 486 | 41 | 2 | 1 | 482 | 8 | 493 | 3.00E-235 | 824.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31150.t1 | A0A072VCX1 | 90.7 | 486 | 41 | 2 | 1 | 482 | 8 | 493 | 2.1e-235 | 824.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052118 | MS.gene31150 | 0.841557 | 4.42E-58 | -1.69E-46 |
MS.gene054641 | MS.gene31150 | 0.810991 | 8.75E-51 | -1.69E-46 |
MS.gene054892 | MS.gene31150 | 0.832534 | 8.95E-56 | -1.69E-46 |
MS.gene054893 | MS.gene31150 | 0.826197 | 3.10E-54 | -1.69E-46 |
MS.gene060522 | MS.gene31150 | 0.803347 | 3.64E-49 | -1.69E-46 |
MS.gene060785 | MS.gene31150 | 0.810836 | 9.46E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 76 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACCTTGGAAGGCGCGGTTAA+AGG | 0.224919 | 2.4:+6563460 | None:intergenic |
GGTCTAAGCAAACCGAAATT+TGG | 0.233160 | 2.4:-6563411 | MS.gene31150:CDS |
AGTGATTTATCAATCTTTAA+AGG | 0.241353 | 2.4:+6562674 | None:intergenic |
TTGTCTTGACAGCTAATTTC+AGG | 0.275591 | 2.4:+6562524 | None:intergenic |
CTTGGGAAAGTGCCAAATTT+CGG | 0.322890 | 2.4:+6563399 | None:intergenic |
TTATGAAACGCCGAAGCTTT+CGG | 0.334227 | 2.4:-6563308 | MS.gene31150:CDS |
TATTCTTGATTATCATCGTT+GGG | 0.343497 | 2.4:-6564258 | MS.gene31150:CDS |
AAGCTTTCGGCGAGCGATCT+TGG | 0.344645 | 2.4:-6563295 | MS.gene31150:CDS |
CCACTTGATTCCATCCTTTG+TGG | 0.349946 | 2.4:+6563206 | None:intergenic |
TAGGCTAGCTTCATGTTTGT+TGG | 0.375152 | 2.4:+6562988 | None:intergenic |
AAAGCGAAATTGACAAAATC+AGG | 0.380909 | 2.4:-6563490 | MS.gene31150:CDS |
GAGATGATGTTCTTCGCATT+AGG | 0.406169 | 2.4:+6562969 | None:intergenic |
AATTGAAATGTCTCTGTTGA+GGG | 0.417690 | 2.4:+6563630 | None:intergenic |
ATGCCTAATCTTGAGTCCTT+AGG | 0.420369 | 2.4:-6562788 | MS.gene31150:CDS |
AATCTTTAAACATACCTTGA+GGG | 0.448540 | 2.4:+6563849 | None:intergenic |
AGATCGCTCGCCGAAAGCTT+CGG | 0.452317 | 2.4:+6563298 | None:intergenic |
ATCATCGTTGGGGTGTCAAA+AGG | 0.453879 | 2.4:-6564247 | MS.gene31150:CDS |
AATATCAAATGCTAAAGGTC+AGG | 0.458115 | 2.4:-6563710 | MS.gene31150:CDS |
ATATTCTTGATTATCATCGT+TGG | 0.463067 | 2.4:-6564259 | MS.gene31150:CDS |
CGAAATTTGGCACTTTCCCA+AGG | 0.470153 | 2.4:-6563398 | MS.gene31150:CDS |
AATCCTAAGGACTCAAGATT+AGG | 0.474891 | 2.4:+6562785 | None:intergenic |
AGATCTCTTTCTCGTTATTG+TGG | 0.476200 | 2.4:+6563092 | None:intergenic |
TCCTAGTTCTTTATCTGCTG+TGG | 0.479016 | 2.4:-6562591 | MS.gene31150:CDS |
GTCAATTTCGCTTTGTTGTG+AGG | 0.479415 | 2.4:+6563499 | None:intergenic |
AAAGTTGCTAGCTGGAACTC+AGG | 0.480623 | 2.4:-6563371 | MS.gene31150:CDS |
GAAGGCTTTGAAGAAATACT+TGG | 0.482916 | 2.4:+6563241 | None:intergenic |
GCTAAAGGTCAGGCTAGTAG+TGG | 0.495455 | 2.4:-6563700 | MS.gene31150:CDS |
TCCTTTAACCGCGCCTTCCA+AGG | 0.498449 | 2.4:-6563461 | MS.gene31150:CDS |
TAAATTTGTTACCTTCTGCT+TGG | 0.498904 | 2.4:+6562492 | None:intergenic |
ATTAGTTCAGAGGAATCTAC+AGG | 0.503053 | 2.4:-6564326 | None:intergenic |
ACATTAGCTCTAGTACCTTC+CGG | 0.504712 | 2.4:-6563432 | MS.gene31150:CDS |
TTGTGGCTTACTCCTTCAGA+AGG | 0.507237 | 2.4:+6563223 | None:intergenic |
TAATTGAAATGTCTCTGTTG+AGG | 0.510901 | 2.4:+6563629 | None:intergenic |
AACAAATGAAGAAAATAATA+CGG | 0.513989 | 2.4:-6562738 | MS.gene31150:CDS |
AAATTTCGGTTTGCTTAGAC+CGG | 0.520967 | 2.4:+6563413 | None:intergenic |
CAAATTCAAGAAGTTAATCA+AGG | 0.522924 | 2.4:-6564302 | MS.gene31150:CDS |
GAAGTTGATGAAACAGTTGA+AGG | 0.525274 | 2.4:-6562632 | MS.gene31150:CDS |
AGCTGTCAAGACAATACAAT+CGG | 0.528083 | 2.4:-6562515 | MS.gene31150:CDS |
AAGGAGTAAGCCACAAAGGA+TGG | 0.528298 | 2.4:-6563216 | MS.gene31150:CDS |
ATGATAAGATTCACAAGAGT+AGG | 0.532170 | 2.4:-6562844 | MS.gene31150:CDS |
ATTTCTTCAAAGCCTTCTGA+AGG | 0.533424 | 2.4:-6563235 | MS.gene31150:CDS |
TCATCGTTGGGGTGTCAAAA+GGG | 0.534999 | 2.4:-6564246 | MS.gene31150:CDS |
GCACTTCATCGGAAGAAAGA+TGG | 0.537156 | 2.4:-6563673 | MS.gene31150:CDS |
AGAGAAATATCAAATGCTAA+AGG | 0.539737 | 2.4:-6563715 | MS.gene31150:CDS |
AAGTTAATCAAGGATGTATG+TGG | 0.539941 | 2.4:-6564292 | MS.gene31150:CDS |
TTCGGTTTGCTTAGACCGGA+AGG | 0.541362 | 2.4:+6563417 | None:intergenic |
GAAGATAAAACATGCACTTG+TGG | 0.545595 | 2.4:-6563155 | MS.gene31150:CDS |
AAAACACTTGATTAGTTCAG+AGG | 0.547935 | 2.4:-6564336 | None:intergenic |
TCCACAGCAGATAAAGAACT+AGG | 0.548583 | 2.4:+6562590 | None:intergenic |
ATCATCTCTTAACGAATCGA+TGG | 0.553700 | 2.4:-6562954 | MS.gene31150:CDS |
TTTCTAAGAGATATAGACAT+TGG | 0.556008 | 2.4:-6563544 | MS.gene31150:CDS |
GCACAAGCAAAGAGATCAAG+TGG | 0.566429 | 2.4:-6562904 | MS.gene31150:CDS |
ATTCTTGATTATCATCGTTG+GGG | 0.567532 | 2.4:-6564257 | MS.gene31150:CDS |
CTAAGAGATATAGACATTGG+TGG | 0.569025 | 2.4:-6563541 | MS.gene31150:CDS |
AGTTAATCAAGGATGTATGT+GGG | 0.578331 | 2.4:-6564291 | MS.gene31150:CDS |
AATACAATCGGCCAAGCAGA+AGG | 0.578706 | 2.4:-6562503 | MS.gene31150:CDS |
ATCTCACAAAGCTTAGATGT+TGG | 0.579095 | 2.4:-6563073 | MS.gene31150:CDS |
GAAATTTGGCACTTTCCCAA+GGG | 0.581947 | 2.4:-6563397 | MS.gene31150:CDS |
TACAGATGCAGAAGCCCTCA+AGG | 0.591111 | 2.4:-6563863 | MS.gene31150:intron |
GATGAAACAGTTGAAGGGAG+TGG | 0.594980 | 2.4:-6562626 | MS.gene31150:CDS |
GTAGTGGGAATGCACTTCAT+CGG | 0.597185 | 2.4:-6563684 | MS.gene31150:CDS |
CATGACTACTAATCTTAGCA+AGG | 0.600526 | 2.4:-6562561 | MS.gene31150:CDS |
CTAAAGGTCAGGCTAGTAGT+GGG | 0.612454 | 2.4:-6563699 | MS.gene31150:CDS |
AAGTTGATGAAACAGTTGAA+GGG | 0.625255 | 2.4:-6562631 | MS.gene31150:CDS |
TCTTGGAATCGATAGTGTCA+TGG | 0.628298 | 2.4:-6563278 | MS.gene31150:CDS |
TCATCGGAAGAAAGATGGCA+AGG | 0.628410 | 2.4:-6563668 | MS.gene31150:CDS |
AAAGAGTAAGAGCTTGAGTG+AGG | 0.644516 | 2.4:-6563032 | MS.gene31150:CDS |
GTTAATCAAGGATGTATGTG+GGG | 0.647876 | 2.4:-6564290 | MS.gene31150:CDS |
ATCATGTAGAATGAATCCTA+AGG | 0.650965 | 2.4:+6562772 | None:intergenic |
CCACAAAGGATGGAATCAAG+TGG | 0.658566 | 2.4:-6563206 | MS.gene31150:CDS |
TCTGAAGGAGTAAGCCACAA+AGG | 0.665084 | 2.4:-6563220 | MS.gene31150:CDS |
AAATTTGGCACTTTCCCAAG+GGG | 0.665909 | 2.4:-6563396 | MS.gene31150:CDS |
AATTTGGCACTTTCCCAAGG+GGG | 0.673506 | 2.4:-6563395 | MS.gene31150:CDS |
AAATTGCTTCTAGAAAACAT+AGG | 0.675542 | 2.4:+6562815 | None:intergenic |
AAATGAAGAAAATAATACGG+TGG | 0.680803 | 2.4:-6562735 | MS.gene31150:CDS |
GACTACTAATCTTAGCAAGG+AGG | 0.711361 | 2.4:-6562558 | MS.gene31150:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACATGATAAAAATATATATA+AGG | - | chr2.4:6562712-6562731 | MS.gene31150:CDS | 10.0% |
!! | ATGATAAAAATATATATAAG+GGG | - | chr2.4:6562714-6562733 | MS.gene31150:CDS | 10.0% |
!! | CATGATAAAAATATATATAA+GGG | - | chr2.4:6562713-6562732 | MS.gene31150:CDS | 10.0% |
!!! | AATTCTTTATTTATTTATGA+CGG | + | chr2.4:6562985-6563004 | None:intergenic | 10.0% |
!! | AACAAATGAAGAAAATAATA+CGG | - | chr2.4:6564049-6564068 | MS.gene31150:intron | 15.0% |
!! | TTCTACTTTAAATAATTCTA+AGG | + | chr2.4:6562816-6562835 | None:intergenic | 15.0% |
!!! | AGATTCATGATTATATTTTA+TGG | - | chr2.4:6562956-6562975 | MS.gene31150:CDS | 15.0% |
!!! | TTTAAATAATTCTAAGGTAT+AGG | + | chr2.4:6562810-6562829 | None:intergenic | 15.0% |
!!! | TTTTAATGATTATAAAGCAA+TGG | + | chr2.4:6562686-6562705 | None:intergenic | 15.0% |
!! | AGTGATTTATCAATCTTTAA+AGG | + | chr2.4:6564116-6564135 | None:intergenic | 20.0% |
! | AAATGAAGAAAATAATACGG+TGG | - | chr2.4:6564052-6564071 | MS.gene31150:intron | 25.0% |
! | AATCTTTAAACATACCTTGA+GGG | + | chr2.4:6562941-6562960 | None:intergenic | 25.0% |
! | AGAGAAATATCAAATGCTAA+AGG | - | chr2.4:6563072-6563091 | MS.gene31150:CDS | 25.0% |
! | ATAAAAGAAGAAACATAGTG+TGG | + | chr2.4:6562615-6562634 | None:intergenic | 25.0% |
! | ATATTCTTGATTATCATCGT+TGG | - | chr2.4:6562528-6562547 | MS.gene31150:CDS | 25.0% |
! | CAAATTCAAGAAGTTAATCA+AGG | - | chr2.4:6562485-6562504 | MS.gene31150:CDS | 25.0% |
! | TATTCTTGATTATCATCGTT+GGG | - | chr2.4:6562529-6562548 | MS.gene31150:CDS | 25.0% |
!! | AAATTGCTTCTAGAAAACAT+AGG | + | chr2.4:6563975-6563994 | None:intergenic | 25.0% |
!! | TCTTTTTCTTATCTGCATAT+AGG | + | chr2.4:6562876-6562895 | None:intergenic | 25.0% |
!! | TTTCTAAGAGATATAGACAT+TGG | - | chr2.4:6563243-6563262 | MS.gene31150:CDS | 25.0% |
!!! | ATCACTTGAACATTTTAAAG+AGG | - | chr2.4:6564130-6564149 | MS.gene31150:intron | 25.0% |
!!! | CAAAAACAATGATGATGTTT+TGG | - | chr2.4:6563185-6563204 | MS.gene31150:CDS | 25.0% |
AAAGCGAAATTGACAAAATC+AGG | - | chr2.4:6563297-6563316 | MS.gene31150:CDS | 30.0% | |
AAGTTAATCAAGGATGTATG+TGG | - | chr2.4:6562495-6562514 | MS.gene31150:CDS | 30.0% | |
AATATCAAATGCTAAAGGTC+AGG | - | chr2.4:6563077-6563096 | MS.gene31150:CDS | 30.0% | |
AATTGAAATGTCTCTGTTGA+GGG | + | chr2.4:6563160-6563179 | None:intergenic | 30.0% | |
AGTTAATCAAGGATGTATGT+GGG | - | chr2.4:6562496-6562515 | MS.gene31150:CDS | 30.0% | |
ATCATGTAGAATGAATCCTA+AGG | + | chr2.4:6564018-6564037 | None:intergenic | 30.0% | |
ATGATAAGATTCACAAGAGT+AGG | - | chr2.4:6563943-6563962 | MS.gene31150:intron | 30.0% | |
ATTCTTGATTATCATCGTTG+GGG | - | chr2.4:6562530-6562549 | MS.gene31150:CDS | 30.0% | |
CAGCTGTTTATATACACAAA+AGG | + | chr2.4:6562765-6562784 | None:intergenic | 30.0% | |
GAATCTTTAAACATACCTTG+AGG | + | chr2.4:6562942-6562961 | None:intergenic | 30.0% | |
TAATTGAAATGTCTCTGTTG+AGG | + | chr2.4:6563161-6563180 | None:intergenic | 30.0% | |
! | CATCTGTAACAACATTTTGT+TGG | + | chr2.4:6562912-6562931 | None:intergenic | 30.0% |
!! | AAACAATGATGATGTTTTGG+AGG | - | chr2.4:6563188-6563207 | MS.gene31150:CDS | 30.0% |
!! | AAGTTGATGAAACAGTTGAA+GGG | - | chr2.4:6564156-6564175 | MS.gene31150:intron | 30.0% |
!! | TAAATTTGTTACCTTCTGCT+TGG | + | chr2.4:6564298-6564317 | None:intergenic | 30.0% |
!!! | AAACTTGATCCAAGCTTTTT+TGG | + | chr2.4:6563444-6563463 | None:intergenic | 30.0% |
!!! | ATTTTGTTGGTCTTGCAAAA+TGG | + | chr2.4:6562899-6562918 | None:intergenic | 30.0% |
!!! | TGTTTTGGAGGTAATTAATG+TGG | - | chr2.4:6563200-6563219 | MS.gene31150:CDS | 30.0% |
AATCCTAAGGACTCAAGATT+AGG | + | chr2.4:6564005-6564024 | None:intergenic | 35.0% | |
ACAAAAGGTTCTTGATGAGA+TGG | + | chr2.4:6562750-6562769 | None:intergenic | 35.0% | |
AGATCTCTTTCTCGTTATTG+TGG | + | chr2.4:6563698-6563717 | None:intergenic | 35.0% | |
AGCTGTCAAGACAATACAAT+CGG | - | chr2.4:6564272-6564291 | MS.gene31150:CDS | 35.0% | |
ATCATCTCTTAACGAATCGA+TGG | - | chr2.4:6563833-6563852 | MS.gene31150:intron | 35.0% | |
ATCTCACAAAGCTTAGATGT+TGG | - | chr2.4:6563714-6563733 | MS.gene31150:CDS | 35.0% | |
ATTTCTTCAAAGCCTTCTGA+AGG | - | chr2.4:6563552-6563571 | MS.gene31150:CDS | 35.0% | |
CATGACTACTAATCTTAGCA+AGG | - | chr2.4:6564226-6564245 | MS.gene31150:CDS | 35.0% | |
CTAAGAGATATAGACATTGG+TGG | - | chr2.4:6563246-6563265 | MS.gene31150:CDS | 35.0% | |
CTTGTGGAACTCAAAAAAAG+TGG | - | chr2.4:6563648-6563667 | MS.gene31150:CDS | 35.0% | |
GAAGATAAAACATGCACTTG+TGG | - | chr2.4:6563632-6563651 | MS.gene31150:CDS | 35.0% | |
GGTATGAAATTGCTTACATC+TGG | + | chr2.4:6562594-6562613 | None:intergenic | 35.0% | |
GTTAATCAAGGATGTATGTG+GGG | - | chr2.4:6562497-6562516 | MS.gene31150:CDS | 35.0% | |
TTGTCTTGACAGCTAATTTC+AGG | + | chr2.4:6564266-6564285 | None:intergenic | 35.0% | |
! | AAATTTCGGTTTGCTTAGAC+CGG | + | chr2.4:6563377-6563396 | None:intergenic | 35.0% |
! | AGAGCTAATGTTTTTCACCT+TGG | + | chr2.4:6563346-6563365 | None:intergenic | 35.0% |
! | CTAATGTTTTTCACCTTGGA+AGG | + | chr2.4:6563342-6563361 | None:intergenic | 35.0% |
!! | GAAGGCTTTGAAGAAATACT+TGG | + | chr2.4:6563549-6563568 | None:intergenic | 35.0% |
!! | GAAGTTGATGAAACAGTTGA+AGG | - | chr2.4:6564155-6564174 | MS.gene31150:intron | 35.0% |
AAAGAGTAAGAGCTTGAGTG+AGG | - | chr2.4:6563755-6563774 | MS.gene31150:intron | 40.0% | |
AAATTTGGCACTTTCCCAAG+GGG | - | chr2.4:6563391-6563410 | MS.gene31150:CDS | 40.0% | |
ATGCCTAATCTTGAGTCCTT+AGG | - | chr2.4:6563999-6564018 | MS.gene31150:intron | 40.0% | |
GAAATTTGGCACTTTCCCAA+GGG | - | chr2.4:6563390-6563409 | MS.gene31150:CDS | 40.0% | |
GACTACTAATCTTAGCAAGG+AGG | - | chr2.4:6564229-6564248 | MS.gene31150:CDS | 40.0% | |
GAGATGATGTTCTTCGCATT+AGG | + | chr2.4:6563821-6563840 | None:intergenic | 40.0% | |
GGTCTAAGCAAACCGAAATT+TGG | - | chr2.4:6563376-6563395 | MS.gene31150:CDS | 40.0% | |
TCCACAGCAGATAAAGAACT+AGG | + | chr2.4:6564200-6564219 | None:intergenic | 40.0% | |
TCTTGGAATCGATAGTGTCA+TGG | - | chr2.4:6563509-6563528 | MS.gene31150:CDS | 40.0% | |
TTATGAAACGCCGAAGCTTT+CGG | - | chr2.4:6563479-6563498 | MS.gene31150:CDS | 40.0% | |
! | GTCAATTTCGCTTTGTTGTG+AGG | + | chr2.4:6563291-6563310 | None:intergenic | 40.0% |
! | TCCTAGTTCTTTATCTGCTG+TGG | - | chr2.4:6564196-6564215 | MS.gene31150:intron | 40.0% |
!! | ACATTAGCTCTAGTACCTTC+CGG | - | chr2.4:6563355-6563374 | MS.gene31150:CDS | 40.0% |
!! | CTTGGGAAAGTGCCAAATTT+CGG | + | chr2.4:6563391-6563410 | None:intergenic | 40.0% |
!! | TAGGCTAGCTTCATGTTTGT+TGG | + | chr2.4:6563802-6563821 | None:intergenic | 40.0% |
AAAGTTGCTAGCTGGAACTC+AGG | - | chr2.4:6563416-6563435 | MS.gene31150:CDS | 45.0% | |
AAGGAGTAAGCCACAAAGGA+TGG | - | chr2.4:6563571-6563590 | MS.gene31150:CDS | 45.0% | |
AATACAATCGGCCAAGCAGA+AGG | - | chr2.4:6564284-6564303 | MS.gene31150:CDS | 45.0% | |
AATTTGGCACTTTCCCAAGG+GGG | - | chr2.4:6563392-6563411 | MS.gene31150:CDS | 45.0% | |
ACTCAGGCTCCAAAAAAGCT+TGG | - | chr2.4:6563432-6563451 | MS.gene31150:CDS | 45.0% | |
CCACAAAGGATGGAATCAAG+TGG | - | chr2.4:6563581-6563600 | MS.gene31150:CDS | 45.0% | |
CCACTTGATTCCATCCTTTG+TGG | + | chr2.4:6563584-6563603 | None:intergenic | 45.0% | |
CGAAATTTGGCACTTTCCCA+AGG | - | chr2.4:6563389-6563408 | MS.gene31150:CDS | 45.0% | |
CTAAAGGTCAGGCTAGTAGT+GGG | - | chr2.4:6563088-6563107 | MS.gene31150:CDS | 45.0% | |
GATGAAACAGTTGAAGGGAG+TGG | - | chr2.4:6564161-6564180 | MS.gene31150:intron | 45.0% | |
GCACAAGCAAAGAGATCAAG+TGG | - | chr2.4:6563883-6563902 | MS.gene31150:CDS | 45.0% | |
GCACTTCATCGGAAGAAAGA+TGG | - | chr2.4:6563114-6563133 | MS.gene31150:CDS | 45.0% | |
TCATCGGAAGAAAGATGGCA+AGG | - | chr2.4:6563119-6563138 | MS.gene31150:CDS | 45.0% | |
TCTGAAGGAGTAAGCCACAA+AGG | - | chr2.4:6563567-6563586 | MS.gene31150:CDS | 45.0% | |
TTGTGGCTTACTCCTTCAGA+AGG | + | chr2.4:6563567-6563586 | None:intergenic | 45.0% | |
! | ATCATCGTTGGGGTGTCAAA+AGG | - | chr2.4:6562540-6562559 | MS.gene31150:CDS | 45.0% |
! | GTAGTGGGAATGCACTTCAT+CGG | - | chr2.4:6563103-6563122 | MS.gene31150:CDS | 45.0% |
! | TCATCGTTGGGGTGTCAAAA+GGG | - | chr2.4:6562541-6562560 | MS.gene31150:CDS | 45.0% |
!! | AATATATAAATATAAATATC+AGG | - | chr2.4:6563038-6563057 | MS.gene31150:CDS | 5.0% |
AAGGGGGAAAAGTTGCTAGC+TGG | - | chr2.4:6563408-6563427 | MS.gene31150:CDS | 50.0% | |
GCTAAAGGTCAGGCTAGTAG+TGG | - | chr2.4:6563087-6563106 | MS.gene31150:CDS | 50.0% | |
TACAGATGCAGAAGCCCTCA+AGG | - | chr2.4:6562924-6562943 | MS.gene31150:CDS | 50.0% | |
! | AGCTAGCAACTTTTCCCCCT+TGG | + | chr2.4:6563409-6563428 | None:intergenic | 50.0% |
! | GCTAGCAACTTTTCCCCCTT+GGG | + | chr2.4:6563408-6563427 | None:intergenic | 50.0% |
! | GTTTTTCACCTTGGAAGGCG+CGG | + | chr2.4:6563337-6563356 | None:intergenic | 50.0% |
! | TTCGGTTTGCTTAGACCGGA+AGG | + | chr2.4:6563373-6563392 | None:intergenic | 50.0% |
AAGCTTTCGGCGAGCGATCT+TGG | - | chr2.4:6563492-6563511 | MS.gene31150:CDS | 55.0% | |
AGATCGCTCGCCGAAAGCTT+CGG | + | chr2.4:6563492-6563511 | None:intergenic | 55.0% | |
TCCTTTAACCGCGCCTTCCA+AGG | - | chr2.4:6563326-6563345 | MS.gene31150:CDS | 55.0% | |
! | ACCTTGGAAGGCGCGGTTAA+AGG | + | chr2.4:6563330-6563349 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 6562466 | 6564343 | 6562466 | ID=MS.gene31150 |
chr2.4 | mRNA | 6562466 | 6564343 | 6562466 | ID=MS.gene31150.t1;Parent=MS.gene31150 |
chr2.4 | exon | 6564213 | 6564343 | 6564213 | ID=MS.gene31150.t1.exon1;Parent=MS.gene31150.t1 |
chr2.4 | CDS | 6564213 | 6564343 | 6564213 | ID=cds.MS.gene31150.t1;Parent=MS.gene31150.t1 |
chr2.4 | exon | 6563864 | 6563925 | 6563864 | ID=MS.gene31150.t1.exon2;Parent=MS.gene31150.t1 |
chr2.4 | CDS | 6563864 | 6563925 | 6563864 | ID=cds.MS.gene31150.t1;Parent=MS.gene31150.t1 |
chr2.4 | exon | 6562466 | 6563749 | 6562466 | ID=MS.gene31150.t1.exon3;Parent=MS.gene31150.t1 |
chr2.4 | CDS | 6562466 | 6563749 | 6562466 | ID=cds.MS.gene31150.t1;Parent=MS.gene31150.t1 |
Gene Sequence |
Protein sequence |