AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene31182

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31182.t1 MTR_2g096210 97.009 468 12 2 1 466 13 480 0.0 939
MS.gene31182.t1 MTR_4g062270 71.335 457 120 3 1 456 13 459 0.0 707
MS.gene31182.t1 MTR_4g062170 72.570 463 122 3 1 462 13 471 0.0 702
MS.gene31182.t1 MTR_4g062190 70.259 464 132 3 1 462 13 472 0.0 685
MS.gene31182.t1 MTR_1g115560 54.566 449 184 5 13 447 26 468 0.0 516
MS.gene31182.t1 MTR_7g118170 44.186 430 221 6 14 436 117 534 5.95e-123 369
MS.gene31182.t1 MTR_3g105550 40.047 427 233 5 15 430 119 533 4.96e-110 336
MS.gene31182.t1 MTR_1g076430 41.379 435 233 8 3 432 88 505 6.15e-110 335
MS.gene31182.t1 MTR_1g110930 40.553 434 238 7 3 432 72 489 4.68e-109 332
MS.gene31182.t1 MTR_5g056510 41.055 436 234 7 4 432 70 489 9.13e-109 331
MS.gene31182.t1 MTR_4g070270 40.000 420 232 5 15 430 96 499 4.86e-108 330
MS.gene31182.t1 MTR_2g054940 39.906 426 225 6 15 430 98 502 3.54e-106 325
MS.gene31182.t1 MTR_1g041085 39.007 423 237 4 15 432 105 511 5.58e-105 322
MS.gene31182.t1 MTR_7g118160 43.169 366 180 6 79 432 69 418 1.56e-100 308
MS.gene31182.t1 MTR_4g054415 37.793 426 243 5 11 430 13 422 7.42e-99 303
MS.gene31182.t1 MTR_4g054630 37.793 426 243 5 11 430 54 463 1.38e-98 304
MS.gene31182.t1 MTR_4g113280 37.767 421 230 6 15 430 87 480 1.78e-97 302
MS.gene31182.t1 MTR_2g007020 40.048 417 236 4 15 430 45 448 2.50e-97 300
MS.gene31182.t1 MTR_7g081695 38.425 419 225 5 17 430 100 490 2.30e-95 304
MS.gene31182.t1 MTR_6g074880 38.955 421 227 10 20 430 65 465 1.62e-94 293
MS.gene31182.t1 MTR_2g436480 36.967 422 251 5 11 430 40 448 1.80e-91 285
MS.gene31182.t1 MTR_6g032965 39.378 386 211 5 52 430 12 381 2.37e-90 280
MS.gene31182.t1 MTR_2g013740 35.784 408 243 4 17 422 110 500 3.66e-88 278
MS.gene31182.t1 MTR_1g102290 37.647 425 237 8 15 430 78 483 5.08e-86 272
MS.gene31182.t1 MTR_3g072940 37.055 421 234 8 20 430 83 482 1.69e-82 263
MS.gene31182.t1 MTR_3g072980 37.055 421 234 8 20 430 83 482 1.80e-82 263
MS.gene31182.t1 MTR_6g051440 37.352 423 230 8 20 430 82 481 9.24e-78 251
MS.gene31182.t1 MTR_4g054260 38.806 268 126 5 169 430 87 322 3.15e-54 184
MS.gene31182.t1 MTR_4g053905 37.870 169 85 3 267 430 3 156 2.24e-32 121
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31182.t1 AT2G28630 66.079 454 149 3 7 456 19 471 0.0 634
MS.gene31182.t1 AT2G28630 66.079 454 149 3 7 456 19 471 0.0 634
MS.gene31182.t1 AT1G07720 65.096 467 144 4 2 456 57 516 0.0 628
MS.gene31182.t1 AT1G07720 65.096 467 144 4 2 456 14 473 0.0 627
MS.gene31182.t1 AT5G04530 53.244 447 196 5 5 447 18 455 7.58e-180 511
MS.gene31182.t1 AT1G01120 42.958 426 213 6 15 430 118 523 7.11e-122 366
MS.gene31182.t1 AT2G46720 38.710 434 249 6 3 432 44 464 1.19e-110 335
MS.gene31182.t1 AT4G34510 41.080 426 228 5 11 430 74 482 2.44e-110 335
MS.gene31182.t1 AT1G25450 41.435 432 233 7 3 430 68 483 4.84e-109 332
MS.gene31182.t1 AT4G34520 39.723 433 226 6 15 430 73 487 4.49e-108 330
MS.gene31182.t1 AT2G15090 38.182 440 248 7 1 430 51 476 3.72e-107 327
MS.gene31182.t1 AT2G16280 40.000 425 225 6 15 430 104 507 6.97e-107 327
MS.gene31182.t1 AT1G19440 38.353 425 232 6 15 430 108 511 4.25e-106 325
MS.gene31182.t1 AT2G26640 40.411 438 233 8 1 430 83 500 1.12e-105 323
MS.gene31182.t1 AT5G43760 40.749 427 226 7 15 430 107 517 2.35e-105 323
MS.gene31182.t1 AT4G34250 38.426 432 228 6 15 430 75 484 4.10e-105 322
MS.gene31182.t1 AT1G68530 40.573 419 231 7 15 430 85 488 1.45e-104 320
MS.gene31182.t1 AT3G10280 36.952 433 251 5 3 432 44 457 6.84e-104 317
MS.gene31182.t1 AT1G04220 38.864 440 240 8 3 430 90 512 1.63e-103 319
MS.gene31182.t1 AT2G26250 36.009 436 254 5 15 430 117 547 2.94e-99 308
MS.gene31182.t1 AT5G49070 37.176 425 255 4 6 430 40 452 4.58e-95 295
MS.gene31182.t1 AT1G71160 36.983 411 246 3 20 430 48 445 3.60e-93 290
MS.gene31182.t1 AT3G52160 31.796 412 236 4 4 414 73 440 3.22e-75 243
MS.gene31182.t1 AT3G52160 34.270 356 189 4 60 414 16 327 2.87e-71 229
MS.gene31182.t1 AT1G68530 38.007 271 161 3 15 282 85 351 5.74e-58 196
MS.gene31182.t1 AT5G49070 31.183 279 189 2 3 281 37 312 1.98e-40 147

Find 74 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAATGCAACAGTTGTTAT+TGG 0.230294 2.1:+7235356 MS.gene31182:CDS
CTTAGTACAAATTGGTATTC+AGG 0.248106 2.1:+7234710 MS.gene31182:CDS
AAAGCTCTTGTAGCTGCTTT+TGG 0.259427 2.1:-7234947 None:intergenic
TACCAGCTAGGGAAATATTT+AGG 0.265669 2.1:+7235005 MS.gene31182:CDS
ATGACATTCTTGCTGGTTCT+AGG 0.278483 2.1:-7235216 None:intergenic
CGGCCTTCGATGAAGTTTCT+TGG 0.294675 2.1:-7234374 None:intergenic
GTGGTATGTGTTGGGGTATA+TGG 0.299234 2.1:+7235273 MS.gene31182:CDS
GAACAATGTGGCAAGATTAT+AGG 0.312551 2.1:+7234266 MS.gene31182:CDS
TTACTATCCACCACACTCTT+TGG 0.331528 2.1:+7235435 MS.gene31182:CDS
CCAAGCTTTCTTTCATCACT+TGG 0.337997 2.1:-7234239 None:intergenic
CCATCGTTGGGTTCACAGTT+CGG 0.347303 2.1:-7234394 None:intergenic
TCCACTTCGTCTTCCATCGT+TGG 0.351430 2.1:-7234407 None:intergenic
CAGAGTCTCTTAGTACAAAT+TGG 0.351617 2.1:+7234702 MS.gene31182:CDS
ATAAAAGCTTATAACCTATC+TGG 0.357029 2.1:+7234590 MS.gene31182:CDS
AGAATGTCATTACATAGATT+TGG 0.358478 2.1:+7235229 MS.gene31182:CDS
TGCACTTGTGTTTCCTGATC+TGG 0.359947 2.1:+7234156 MS.gene31182:CDS
TAAATGCAACAGTTGTTATT+GGG 0.360260 2.1:+7235357 MS.gene31182:CDS
AGTTTGAGTTTGAAAGTGTT+TGG 0.363208 2.1:-7235505 None:intergenic
CTCTTTGGCCAACCCATTCA+TGG 0.371696 2.1:+7235450 MS.gene31182:CDS
CTATGTAATGACATTCTTGC+TGG 0.374650 2.1:-7235223 None:intergenic
AAGCAGTGATAGATGGTATT+GGG 0.387136 2.1:+7235167 MS.gene31182:CDS
CCACTTCGTCTTCCATCGTT+GGG 0.388821 2.1:-7234406 None:intergenic
CAACCGTACTTCTCCATGAA+TGG 0.401060 2.1:-7235463 None:intergenic
GGAAGACGAAGTGGAGGAAA+TGG 0.412780 2.1:+7234415 MS.gene31182:CDS
AGCTTATAACCTATCTGGTA+TGG 0.425685 2.1:+7234595 MS.gene31182:CDS
GCAAAGCTTCTAAACAAATC+AGG 0.429501 2.1:+7234461 MS.gene31182:CDS
ATAGGAAACAATGAGAATAT+TGG 0.429933 2.1:+7234284 MS.gene31182:CDS
CTGAGTTGACAACGGCTTTG+AGG 0.431728 2.1:-7234328 None:intergenic
TCACCAGTGAATTTCAAAAC+TGG 0.431886 2.1:+7235112 MS.gene31182:CDS
AAGTCAGCTGCAAGATGGTT+TGG 0.438277 2.1:+7235076 MS.gene31182:CDS
AGAGTATTGATGATAAGTTT+AGG 0.443493 2.1:+7235325 MS.gene31182:CDS
ATGATTCTTGAAGTTAAAGA+AGG 0.444901 2.1:-7234542 None:intergenic
AAAGCAGTGATAGATGGTAT+TGG 0.447144 2.1:+7235166 MS.gene31182:CDS
TACCTAAATATTTCCCTAGC+TGG 0.449686 2.1:-7235007 None:intergenic
AGTAGTTTGTGGTATGTGTT+GGG 0.450299 2.1:+7235265 MS.gene31182:CDS
CAAATCAGGCATTTCACCTT+CGG 0.453132 2.1:+7234475 MS.gene31182:CDS
CCAAGTGATGAAAGAAAGCT+TGG 0.482158 2.1:+7234239 MS.gene31182:CDS
CTCAAAGCCGTTGTCAACTC+AGG 0.488420 2.1:+7234329 MS.gene31182:CDS
GGAGGAAAAGCAGTGATAGA+TGG 0.488609 2.1:+7235160 MS.gene31182:CDS
AACCGTACTTCTCCATGAAT+GGG 0.497250 2.1:-7235462 None:intergenic
GAAGATGAACAAGGTAAACT+TGG 0.499726 2.1:+7234902 MS.gene31182:CDS
AACCATCTTGCAGCTGACTT+AGG 0.502261 2.1:-7235073 None:intergenic
AGTTTAATATGTAACACTCT+TGG 0.508115 2.1:-7234202 None:intergenic
CTCCTAAGTCAGCTGCAAGA+TGG 0.509644 2.1:+7235071 MS.gene31182:CDS
TTGATGATAAGTTTAGGTGC+TGG 0.511949 2.1:+7235331 MS.gene31182:CDS
AAGTAGTTTGTGGTATGTGT+TGG 0.515984 2.1:+7235264 MS.gene31182:CDS
GCCGTTGTCAACTCAGGCAT+TGG 0.520687 2.1:+7234335 MS.gene31182:CDS
GAAGTAATGAGAGATGTTGT+TGG 0.523138 2.1:+7235379 MS.gene31182:CDS
CACTACAACCCATACCAGAT+AGG 0.541455 2.1:-7234604 None:intergenic
GCTTATAACCTATCTGGTAT+GGG 0.546638 2.1:+7234596 MS.gene31182:CDS
ACACATCAGCAAGTAGTTTG+TGG 0.547190 2.1:+7235254 MS.gene31182:CDS
GAATTGCACAACCGCCGGTA+CGG 0.562704 2.1:-7234769 None:intergenic
TTCGGAGATCGATATTCTTG+TGG 0.562977 2.1:+7234493 MS.gene31182:CDS
CATTCATGGAGAAGTACGGT+TGG 0.595870 2.1:+7235464 MS.gene31182:CDS
TGTCTAGTTAGAACTCATCA+TGG 0.608151 2.1:+7234842 MS.gene31182:CDS
AACCCATTCATGGAGAAGTA+CGG 0.611169 2.1:+7235460 MS.gene31182:CDS
GTACTTCTCCATGAATGGGT+TGG 0.611489 2.1:-7235458 None:intergenic
AACGATGGAAGACGAAGTGG+AGG 0.619961 2.1:+7234409 MS.gene31182:CDS
GGTATATGGAAGCTAAGAAG+AGG 0.621077 2.1:+7235287 MS.gene31182:CDS
TACGGAAAAGACAATTTGCA+AGG 0.623230 2.1:-7234751 None:intergenic
CCCAACGATGGAAGACGAAG+TGG 0.624451 2.1:+7234406 MS.gene31182:CDS
GCTCCAAGAAACTTCATCGA+AGG 0.628524 2.1:+7234371 MS.gene31182:CDS
GAGAAGAATTGCACAACCGC+CGG 0.629617 2.1:-7234774 None:intergenic
GTAGTTTGTGGTATGTGTTG+GGG 0.633510 2.1:+7235266 MS.gene31182:CDS
TAACCATTACAAAATGAGAG+AGG 0.653134 2.1:+7234565 MS.gene31182:CDS
TGTCAACTCAGGCATTGGTG+AGG 0.663337 2.1:+7234340 MS.gene31182:CDS
CCGAACTGTGAACCCAACGA+TGG 0.667415 2.1:+7234394 MS.gene31182:CDS
ACAAGAATATCGATCTCCGA+AGG 0.671733 2.1:-7234491 None:intergenic
TGGTGATGATAGAAATGTGT+GGG 0.672881 2.1:+7235399 MS.gene31182:CDS
ACCAATGCCTGAGTTGACAA+CGG 0.693257 2.1:-7234336 None:intergenic
AATGGGTTGGCCAAAGAGTG+TGG 0.696430 2.1:-7235445 None:intergenic
TTGGTGATGATAGAAATGTG+TGG 0.701014 2.1:+7235398 MS.gene31182:CDS
GGGTTGGCCAAAGAGTGTGG+TGG 0.735704 2.1:-7235442 None:intergenic
AAGCTTGGAAGTGAACAATG+TGG 0.752031 2.1:+7234254 MS.gene31182:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGCTTTTACTGATAATTTAA+GGG + chr2.1:7234964-7234983 MS.gene31182:CDS 20.0%
! AGAATGTCATTACATAGATT+TGG + chr2.1:7235229-7235248 MS.gene31182:CDS 25.0%
! AGTTTAATATGTAACACTCT+TGG - chr2.1:7234205-7234224 None:intergenic 25.0%
! ATAAAAGCTTATAACCTATC+TGG + chr2.1:7234590-7234609 MS.gene31182:CDS 25.0%
! ATAGGAAACAATGAGAATAT+TGG + chr2.1:7234284-7234303 MS.gene31182:CDS 25.0%
! ATGATTCTTGAAGTTAAAGA+AGG - chr2.1:7234545-7234564 None:intergenic 25.0%
! GAAAAAATTTGATCAGAGAA+GGG + chr2.1:7234178-7234197 MS.gene31182:CDS 25.0%
! TTAAATGCAACAGTTGTTAT+TGG + chr2.1:7235356-7235375 MS.gene31182:CDS 25.0%
!! GAGCTTTTACTGATAATTTA+AGG + chr2.1:7234963-7234982 MS.gene31182:CDS 25.0%
!! TAAATGCAACAGTTGTTATT+GGG + chr2.1:7235357-7235376 MS.gene31182:CDS 25.0%
!!! AGAGTATTGATGATAAGTTT+AGG + chr2.1:7235325-7235344 MS.gene31182:CDS 25.0%
AGTCAAAAAGAAGATGAACA+AGG + chr2.1:7234893-7234912 MS.gene31182:CDS 30.0%
CTTAGTACAAATTGGTATTC+AGG + chr2.1:7234710-7234729 MS.gene31182:CDS 30.0%
GGAAAAAATTTGATCAGAGA+AGG + chr2.1:7234177-7234196 MS.gene31182:CDS 30.0%
TAACCATTACAAAATGAGAG+AGG + chr2.1:7234565-7234584 MS.gene31182:CDS 30.0%
! ACCTAAAATTTTACCAGCTA+GGG + chr2.1:7234994-7235013 MS.gene31182:CDS 30.0%
! TATCCTCTCTCATTTTGTAA+TGG - chr2.1:7234571-7234590 None:intergenic 30.0%
!! AGTTTGAGTTTGAAAGTGTT+TGG - chr2.1:7235508-7235527 None:intergenic 30.0%
!!! CAGTATAGCTTTGTGTTTTA+AGG - chr2.1:7234813-7234832 None:intergenic 30.0%
!!! GATCAAATTTTTTCCAGATC+AGG - chr2.1:7234172-7234191 None:intergenic 30.0%
AAAGCAGTGATAGATGGTAT+TGG + chr2.1:7235166-7235185 MS.gene31182:CDS 35.0%
AAGCAGTGATAGATGGTATT+GGG + chr2.1:7235167-7235186 MS.gene31182:CDS 35.0%
AGCTTATAACCTATCTGGTA+TGG + chr2.1:7234595-7234614 MS.gene31182:CDS 35.0%
CAGAGTCTCTTAGTACAAAT+TGG + chr2.1:7234702-7234721 MS.gene31182:CDS 35.0%
CTATGTAATGACATTCTTGC+TGG - chr2.1:7235226-7235245 None:intergenic 35.0%
GAACAATGTGGCAAGATTAT+AGG + chr2.1:7234266-7234285 MS.gene31182:CDS 35.0%
GAAGATGAACAAGGTAAACT+TGG + chr2.1:7234902-7234921 MS.gene31182:CDS 35.0%
GAAGTAATGAGAGATGTTGT+TGG + chr2.1:7235379-7235398 MS.gene31182:CDS 35.0%
GCAAAGCTTCTAAACAAATC+AGG + chr2.1:7234461-7234480 MS.gene31182:CDS 35.0%
GCTAAGAAGAGGTTGAAAAA+AGG + chr2.1:7235298-7235317 MS.gene31182:CDS 35.0%
GCTTATAACCTATCTGGTAT+GGG + chr2.1:7234596-7234615 MS.gene31182:CDS 35.0%
TACCAGCTAGGGAAATATTT+AGG + chr2.1:7235005-7235024 MS.gene31182:CDS 35.0%
TACCTAAATATTTCCCTAGC+TGG - chr2.1:7235010-7235029 None:intergenic 35.0%
TACGGAAAAGACAATTTGCA+AGG - chr2.1:7234754-7234773 None:intergenic 35.0%
TCACCAGTGAATTTCAAAAC+TGG + chr2.1:7235112-7235131 MS.gene31182:CDS 35.0%
TGTCTAGTTAGAACTCATCA+TGG + chr2.1:7234842-7234861 MS.gene31182:CDS 35.0%
! AAGTAGTTTGTGGTATGTGT+TGG + chr2.1:7235264-7235283 MS.gene31182:CDS 35.0%
! AGTAGTTTGTGGTATGTGTT+GGG + chr2.1:7235265-7235284 MS.gene31182:CDS 35.0%
! CACCTAAAATTTTACCAGCT+AGG + chr2.1:7234993-7235012 MS.gene31182:CDS 35.0%
! TCCCTAGCTGGTAAAATTTT+AGG - chr2.1:7234998-7235017 None:intergenic 35.0%
! TGGTGATGATAGAAATGTGT+GGG + chr2.1:7235399-7235418 MS.gene31182:CDS 35.0%
! TTGATGATAAGTTTAGGTGC+TGG + chr2.1:7235331-7235350 MS.gene31182:CDS 35.0%
!! CTTTTGGAAGATCTTTAGCT+AGG - chr2.1:7234934-7234953 None:intergenic 35.0%
!! TTGGTGATGATAGAAATGTG+TGG + chr2.1:7235398-7235417 MS.gene31182:CDS 35.0%
!!! ACACCAGTTTTGAAATTCAC+TGG - chr2.1:7235118-7235137 None:intergenic 35.0%
AACCCATTCATGGAGAAGTA+CGG + chr2.1:7235460-7235479 MS.gene31182:CDS 40.0%
AACCGTACTTCTCCATGAAT+GGG - chr2.1:7235465-7235484 None:intergenic 40.0%
AAGCTTGGAAGTGAACAATG+TGG + chr2.1:7234254-7234273 MS.gene31182:CDS 40.0%
ACAAGAATATCGATCTCCGA+AGG - chr2.1:7234494-7234513 None:intergenic 40.0%
ACACATCAGCAAGTAGTTTG+TGG + chr2.1:7235254-7235273 MS.gene31182:CDS 40.0%
CAAATCAGGCATTTCACCTT+CGG + chr2.1:7234475-7234494 MS.gene31182:CDS 40.0%
CCAAGCTTTCTTTCATCACT+TGG - chr2.1:7234242-7234261 None:intergenic 40.0%
CCAAGTGATGAAAGAAAGCT+TGG + chr2.1:7234239-7234258 MS.gene31182:CDS 40.0%
GGTATATGGAAGCTAAGAAG+AGG + chr2.1:7235287-7235306 MS.gene31182:CDS 40.0%
TTACTATCCACCACACTCTT+TGG + chr2.1:7235435-7235454 MS.gene31182:CDS 40.0%
TTCGGAGATCGATATTCTTG+TGG + chr2.1:7234493-7234512 MS.gene31182:CDS 40.0%
! GATCATTTTGTTCTCCACAC+TGG + chr2.1:7235139-7235158 MS.gene31182:CDS 40.0%
! GCAAATTGTCTTTTCCGTAC+CGG + chr2.1:7234755-7234774 MS.gene31182:CDS 40.0%
! GTAGTTTGTGGTATGTGTTG+GGG + chr2.1:7235266-7235285 MS.gene31182:CDS 40.0%
!! AAAGCTCTTGTAGCTGCTTT+TGG - chr2.1:7234950-7234969 None:intergenic 40.0%
!! ATGACATTCTTGCTGGTTCT+AGG - chr2.1:7235219-7235238 None:intergenic 40.0%
AAGTCAGCTGCAAGATGGTT+TGG + chr2.1:7235076-7235095 MS.gene31182:CDS 45.0%
CAACCGTACTTCTCCATGAA+TGG - chr2.1:7235466-7235485 None:intergenic 45.0%
CACTACAACCCATACCAGAT+AGG - chr2.1:7234607-7234626 None:intergenic 45.0%
GCTCCAAGAAACTTCATCGA+AGG + chr2.1:7234371-7234390 MS.gene31182:CDS 45.0%
GGAGGAAAAGCAGTGATAGA+TGG + chr2.1:7235160-7235179 MS.gene31182:CDS 45.0%
GTACTTCTCCATGAATGGGT+TGG - chr2.1:7235461-7235480 None:intergenic 45.0%
GTGGTATGTGTTGGGGTATA+TGG + chr2.1:7235273-7235292 MS.gene31182:CDS 45.0%
TGCACTTGTGTTTCCTGATC+TGG + chr2.1:7234156-7234175 MS.gene31182:CDS 45.0%
! AACCATCTTGCAGCTGACTT+AGG - chr2.1:7235076-7235095 None:intergenic 45.0%
! AATTGTCTTTTCCGTACCGG+CGG + chr2.1:7234758-7234777 MS.gene31182:CDS 45.0%
! ACCAATGCCTGAGTTGACAA+CGG - chr2.1:7234339-7234358 None:intergenic 45.0%
! CATTCATGGAGAAGTACGGT+TGG + chr2.1:7235464-7235483 MS.gene31182:CDS 45.0%
! CATTTTGTTCTCCACACTGG+AGG + chr2.1:7235142-7235161 MS.gene31182:CDS 45.0%
AACGATGGAAGACGAAGTGG+AGG + chr2.1:7234409-7234428 MS.gene31182:CDS 50.0%
CCACTTCGTCTTCCATCGTT+GGG - chr2.1:7234409-7234428 None:intergenic 50.0%
CCATCGTTGGGTTCACAGTT+CGG - chr2.1:7234397-7234416 None:intergenic 50.0%
CGGCCTTCGATGAAGTTTCT+TGG - chr2.1:7234377-7234396 None:intergenic 50.0%
CTCAAAGCCGTTGTCAACTC+AGG + chr2.1:7234329-7234348 MS.gene31182:CDS 50.0%
CTCCTAAGTCAGCTGCAAGA+TGG + chr2.1:7235071-7235090 MS.gene31182:CDS 50.0%
CTCTTTGGCCAACCCATTCA+TGG + chr2.1:7235450-7235469 MS.gene31182:CDS 50.0%
GAGAAGAATTGCACAACCGC+CGG - chr2.1:7234777-7234796 None:intergenic 50.0%
GGAAGACGAAGTGGAGGAAA+TGG + chr2.1:7234415-7234434 MS.gene31182:CDS 50.0%
TCCACTTCGTCTTCCATCGT+TGG - chr2.1:7234410-7234429 None:intergenic 50.0%
! CTGAGTTGACAACGGCTTTG+AGG - chr2.1:7234331-7234350 None:intergenic 50.0%
!! AATGGGTTGGCCAAAGAGTG+TGG - chr2.1:7235448-7235467 None:intergenic 50.0%
!! TCACTGCTTTTCCTCCAGTG+TGG - chr2.1:7235156-7235175 None:intergenic 50.0%
!! TGTCAACTCAGGCATTGGTG+AGG + chr2.1:7234340-7234359 MS.gene31182:CDS 50.0%
CCCAACGATGGAAGACGAAG+TGG + chr2.1:7234406-7234425 MS.gene31182:CDS 55.0%
CCGAACTGTGAACCCAACGA+TGG + chr2.1:7234394-7234413 MS.gene31182:CDS 55.0%
GAATTGCACAACCGCCGGTA+CGG - chr2.1:7234772-7234791 None:intergenic 55.0%
GCCGTTGTCAACTCAGGCAT+TGG + chr2.1:7234335-7234354 MS.gene31182:CDS 55.0%
!! GGGTTGGCCAAAGAGTGTGG+TGG - chr2.1:7235445-7235464 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 7234155 7235555 7234155 ID=MS.gene31182
chr2.1 mRNA 7234155 7235555 7234155 ID=MS.gene31182.t1;Parent=MS.gene31182
chr2.1 exon 7234155 7235555 7234155 ID=MS.gene31182.t1.exon1;Parent=MS.gene31182.t1
chr2.1 CDS 7234155 7235555 7234155 ID=cds.MS.gene31182.t1;Parent=MS.gene31182.t1
Gene Sequence

>MS.gene31182

ATGCACTTGTGTTTCCTGATCTGGAAAAAATTTGATCAGAGAAGGGACCAAGAGTGTTACATATTAAACTATCAATGTTACAAGCCAAGTGATGAAAGAAAGCTTGGAAGTGAACAATGTGGCAAGATTATAGGAAACAATGAGAATATTGGTCTTGATGAGTGCAAGTTCTTCCTCAAAGCCGTTGTCAACTCAGGCATTGGTGAGGAAACTTATGCTCCAAGAAACTTCATCGAAGGCCGAACTGTGAACCCAACGATGGAAGACGAAGTGGAGGAAATGGAAGAGTTTTGTAATGATAGCATTGCAAAGCTTCTAAACAAATCAGGCATTTCACCTTCGGAGATCGATATTCTTGTGGTAAATGTATCTTTATTCTCTTCTGTGCCTTCTTTAACTTCAAGAATCATTAACCATTACAAAATGAGAGAGGATATAAAAGCTTATAACCTATCTGGTATGGGTTGTAGTGCTAGTCTAATCTCATTAGACGTTATTCAAAACATTTTCAAGTCACAAAAGAACAAGTATGCTCTTTTGTTAACATCAGAGTCTCTTAGTACAAATTGGTATTCAGGAAACAATAGATCAATGATCCTTGCAAATTGTCTTTTCCGTACCGGCGGTTGTGCAATTCTTCTCACAAATAAAAGATCCTTAAAACACAAAGCTATACTGAAGTTGAAGTGTCTAGTTAGAACTCATCATGGTGCTAGAGATGATGCTCATAACTGTTGTAGTCAAAAAGAAGATGAACAAGGTAAACTTGGTTTTTACCTAGCTAAAGATCTTCCAAAAGCAGCTACAAGAGCTTTTACTGATAATTTAAGGGTGTTATCACCTAAAATTTTACCAGCTAGGGAAATATTTAGGTATATGCTTATGTCACTCATAAAAAAAGTGATAAAATACTTTGCTCCTAAGTCAGCTGCAAGATGGTTTGGAACAAGTAACAAATCACCAGTGAATTTCAAAACTGGTGTTGATCATTTTGTTCTCCACACTGGAGGAAAAGCAGTGATAGATGGTATTGGGATGAGTTTAGATCTGAATGATTATGACCTAGAACCAGCAAGAATGTCATTACATAGATTTGGTAACACATCAGCAAGTAGTTTGTGGTATGTGTTGGGGTATATGGAAGCTAAGAAGAGGTTGAAAAAAGGTGAGAGAGTATTGATGATAAGTTTAGGTGCTGGCTTTAAATGCAACAGTTGTTATTGGGAAGTAATGAGAGATGTTGTTGGTGATGATAGAAATGTGTGGGACGATTGCATTGATTACTATCCACCACACTCTTTGGCCAACCCATTCATGGAGAAGTACGGTTGGATTAACAACATTCAAGATCCAAACACTTTCAAACTCAAACTTGCTGAGTTTCTTCTCAGTCTTAAGTGA
Protein sequence

>MS.gene31182.t1

MHLCFLIWKKFDQRRDQECYILNYQCYKPSDERKLGSEQCGKIIGNNENIGLDECKFFLKAVVNSGIGEETYAPRNFIEGRTVNPTMEDEVEEMEEFCNDSIAKLLNKSGISPSEIDILVVNVSLFSSVPSLTSRIINHYKMREDIKAYNLSGMGCSASLISLDVIQNIFKSQKNKYALLLTSESLSTNWYSGNNRSMILANCLFRTGGCAILLTNKRSLKHKAILKLKCLVRTHHGARDDAHNCCSQKEDEQGKLGFYLAKDLPKAATRAFTDNLRVLSPKILPAREIFRYMLMSLIKKVIKYFAPKSAARWFGTSNKSPVNFKTGVDHFVLHTGGKAVIDGIGMSLDLNDYDLEPARMSLHRFGNTSASSLWYVLGYMEAKKRLKKGERVLMISLGAGFKCNSCYWEVMRDVVGDDRNVWDDCIDYYPPHSLANPFMEKYGWINNIQDPNTFKLKLAEFLLSLK