AlfalfaGEDB | MS.gene049577

M. sativa cultivar XinJiangDaYe / MS.gene049577

KEGG: -
GO: GO:0003674 GO:0003824 GO:0008168 GO:0016740 GO:0016741
PFAM: PF03492.18

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049577.t1	RHN67909.1	96.2	339	10	1	1	339	7	342	1.40E-183	652.1

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049577.t1	Q9AVK0	43.1	341	183	4	2	337	31	365	1.3e-73	278.1

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049577.t1	A0A072V8J9	96.2	339	10	1	1	339	54	389	1.0e-183	652.1

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049577	MS.gene05137	0.930377	1.79E-93	-1.69E-46
MS.gene049577	MS.gene058142	0.802573	5.26E-49	-1.69E-46
MS.gene049577	MS.gene064919	0.808478	3.04E-50	-1.69E-46
MS.gene049577	MS.gene07055	0.800526	1.38E-48	-1.69E-46
MS.gene049577	MS.gene070829	0.834027	3.80E-56	-1.69E-46
MS.gene049577	MS.gene070831	0.824649	7.20E-54	-1.69E-46
MS.gene049577	MS.gene21907	0.805735	1.16E-49	-1.69E-46
MS.gene049577	MS.gene22505	0.81206	5.13E-51	-1.69E-46
MS.gene049577	MS.gene30928	0.81395	1.97E-51	-1.69E-46
MS.gene049577	MS.gene31182	0.804147	2.48E-49	-1.69E-46
MS.gene049577	MS.gene39361	0.802087	6.63E-49	-1.69E-46
MS.gene049577	MS.gene56100	0.832151	1.11E-55	-1.69E-46
MS.gene049577	MS.gene57950	0.810502	1.12E-50	-1.69E-46
MS.gene049577	MS.gene58652	0.807135	5.86E-50	-1.69E-46
MS.gene049577	MS.gene58789	0.801698	7.96E-49	-1.69E-46
MS.gene049577	MS.gene71833	0.813625	2.33E-51	-1.69E-46
MS.gene049577	MS.gene78129	0.822162	2.75E-53	-1.69E-46
MS.gene049577	MS.gene79509	0.805079	1.59E-49	-1.69E-46
MS.gene049577	MS.gene80157	0.803625	3.19E-49	-1.69E-46
MS.gene049577	MS.gene93743	0.8169	4.36E-52	-1.69E-46
MS.gene049577	MS.gene94277	0.807452	5.02E-50	-1.69E-46
MS.gene049577	MS.gene96681	0.806846	6.75E-50	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene024315	MS.gene049577	PPI
MS.gene52303	MS.gene049577	PPI
MS.gene049577	MS.gene033750	PPI
MS.gene000556	MS.gene049577	PPI
MS.gene02421	MS.gene049577	PPI
MS.gene010553	MS.gene049577	PPI
MS.gene59406	MS.gene049577	PPI
MS.gene024314	MS.gene049577	PPI
MS.gene033735	MS.gene049577	PPI
MS.gene037613	MS.gene049577	PPI
MS.gene014262	MS.gene049577	PPI
MS.gene73369	MS.gene049577	PPI
MS.gene87476	MS.gene049577	PPI
MS.gene73290	MS.gene049577	PPI
MS.gene063148	MS.gene049577	PPI
MS.gene25135	MS.gene049577	PPI
MS.gene52320	MS.gene049577	PPI
MS.gene033734	MS.gene049577	PPI
MS.gene033750	MS.gene049577	PPI
MS.gene049577	MS.gene25135	PPI
MS.gene012028	MS.gene049577	PPI
MS.gene68796	MS.gene049577	PPI
MS.gene76430	MS.gene049577	PPI
MS.gene008450	MS.gene049577	PPI
MS.gene024299	MS.gene049577	PPI
MS.gene049577	MS.gene024314	PPI
MS.gene07908	MS.gene049577	PPI
MS.gene64697	MS.gene049577	PPI
MS.gene049577	MS.gene76430	PPI
MS.gene99450	MS.gene049577	PPI
MS.gene033748	MS.gene049577	PPI
MS.gene68203	MS.gene049577	PPI
MS.gene024301	MS.gene049577	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049577.t1	MTR_3g467560	96.165	339	10	1	1	339	54	389	0.0	667
MS.gene049577.t1	MTR_7g084620	77.876	339	68	4	1	337	30	363	0.0	539
MS.gene049577.t1	MTR_7g084350	70.326	337	99	1	1	337	28	363	9.06e-179	499
MS.gene049577.t1	MTR_7g084330	70.206	339	79	5	1	337	13	331	4.72e-168	471
MS.gene049577.t1	MTR_3g117060	54.464	336	146	4	6	337	35	367	4.14e-127	369
MS.gene049577.t1	MTR_8g076900	44.512	328	167	5	15	337	43	360	2.72e-90	275
MS.gene049577.t1	MTR_8g077040	40.988	344	183	6	5	337	34	368	1.84e-89	273
MS.gene049577.t1	MTR_5g020940	43.939	330	167	5	19	337	57	379	1.46e-88	271
MS.gene049577.t1	MTR_6g056070	42.138	318	165	4	24	337	53	355	4.80e-87	266
MS.gene049577.t1	MTR_4g018820	40.356	337	184	6	5	337	34	357	3.30e-85	261
MS.gene049577.t1	MTR_3g467270	39.628	323	176	4	26	337	53	367	7.86e-83	256
MS.gene049577.t1	MTR_8g020700	39.169	337	184	4	6	337	35	355	7.06e-80	248
MS.gene049577.t1	MTR_1g022465	46.037	328	153	6	26	337	57	376	3.01e-79	247
MS.gene049577.t1	MTR_1g022455	45.370	324	162	5	26	337	57	377	4.13e-78	244
MS.gene049577.t1	MTR_8g020690	38.576	337	189	5	6	337	35	358	6.17e-74	233
MS.gene049577.t1	MTR_5g046110	38.710	341	193	4	2	337	91	420	6.45e-73	232
MS.gene049577.t1	MTR_8g076900	50.000	208	95	2	15	218	43	245	8.44e-64	203
MS.gene049577.t1	MTR_8g020700	44.495	218	110	3	6	218	35	246	1.23e-55	182
MS.gene049577.t1	MTR_3g054330	35.976	328	187	9	24	336	61	380	1.20e-50	173
MS.gene049577.t1	MTR_3g052700	34.862	327	191	8	24	336	69	387	1.75e-50	172
MS.gene049577.t1	MTR_1g108660	33.939	330	178	10	17	334	30	331	3.76e-50	170
MS.gene049577.t1	MTR_5g093900	34.756	328	192	8	23	336	70	389	3.87e-50	172
MS.gene049577.t1	MTR_7g084340	65.546	119	41	0	219	337	11	129	1.70e-49	162
MS.gene049577.t1	MTR_8g077030	39.175	194	89	3	15	208	43	207	5.35e-32	125
MS.gene049577.t1	MTR_6g015620	45.669	127	64	2	214	337	12	136	7.06e-30	111

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049577.t1	AT1G19640	40.678	354	189	5	6	338	35	388	2.58e-77	242
MS.gene049577.t1	AT5G66430	41.231	325	172	5	2	319	23	335	5.99e-77	240
MS.gene049577.t1	AT5G38020	41.768	328	166	7	6	319	32	348	1.02e-76	240
MS.gene049577.t1	AT3G11480	41.840	337	176	5	6	337	57	378	6.25e-76	238
MS.gene049577.t1	AT5G38020	42.188	320	160	7	14	319	1	309	1.33e-75	236
MS.gene049577.t1	AT5G04370	40.988	344	178	7	2	337	63	389	2.63e-71	227
MS.gene049577.t1	AT5G04370	41.056	341	182	7	2	337	68	394	2.98e-71	227
MS.gene049577.t1	AT5G04370	41.056	341	182	7	2	337	82	408	3.70e-71	227
MS.gene049577.t1	AT3G21950	40.968	310	154	7	20	313	46	342	3.69e-69	221
MS.gene049577.t1	AT4G36470	39.329	328	172	8	26	339	57	371	4.46e-68	218
MS.gene049577.t1	AT5G04380	38.348	339	184	7	6	336	64	385	8.16e-66	213
MS.gene049577.t1	AT5G04380	39.809	314	166	6	14	319	1	299	2.59e-65	209
MS.gene049577.t1	AT2G14060	36.391	327	195	4	2	323	36	354	1.82e-64	209
MS.gene049577.t1	AT3G21950	36.842	342	155	8	20	313	46	374	5.82e-63	206
MS.gene049577.t1	AT5G04380	38.509	322	168	7	6	319	60	359	7.05e-61	199
MS.gene049577.t1	AT1G15125	33.626	342	190	11	8	337	31	347	4.03e-50	171
MS.gene049577.t1	AT2G14060	42.289	201	108	2	2	202	36	228	3.39e-49	165
MS.gene049577.t1	AT1G68040	35.404	322	173	10	10	322	49	344	1.32e-48	167
MS.gene049577.t1	AT5G55250	32.951	349	205	11	6	336	9	346	6.96e-48	165
MS.gene049577.t1	AT5G38100	33.333	309	169	7	22	318	31	314	9.93e-48	164
MS.gene049577.t1	AT5G55250	32.951	349	205	11	6	336	47	384	1.25e-47	165
MS.gene049577.t1	AT5G38100	32.468	308	173	6	22	318	54	337	2.55e-47	164
MS.gene049577.t1	AT5G38780	33.441	311	165	10	24	319	8	291	3.72e-47	162
MS.gene049577.t1	AT5G38780	33.436	326	174	11	9	319	43	340	5.72e-47	163
MS.gene049577.t1	AT5G37970	31.804	327	186	9	5	319	40	341	1.10e-45	159
MS.gene049577.t1	AT5G37990	31.013	316	181	9	14	317	49	339	2.51e-44	156
MS.gene049577.t1	AT3G44870	34.177	237	130	6	26	254	53	271	1.28e-36	135
MS.gene049577.t1	AT3G44860	34.322	236	136	4	26	255	53	275	2.06e-36	134
MS.gene049577.t1	AT1G66720	32.576	264	150	7	2	255	35	280	1.29e-35	132
MS.gene049577.t1	AT4G26420	29.448	326	196	12	12	314	37	351	1.55e-35	133
MS.gene049577.t1	AT1G66700	30.864	243	142	5	24	255	53	280	1.35e-33	127
MS.gene049577.t1	AT3G44840	32.773	238	135	7	26	254	53	274	1.35e-32	124
MS.gene049577.t1	AT5G56300	28.947	304	190	8	25	313	68	360	6.76e-32	123
MS.gene049577.t1	AT1G15125	34.529	223	123	8	8	221	31	239	7.87e-31	117
MS.gene049577.t1	AT1G66690	28.289	304	168	7	24	310	53	323	9.50e-31	119
MS.gene049577.t1	AT5G38100	33.838	198	115	4	22	215	54	239	2.38e-29	113
MS.gene049577.t1	AT5G38100	33.838	198	115	4	22	215	54	239	2.98e-29	113
MS.gene049577.t1	AT1G66700	32.749	171	98	3	24	190	53	210	6.27e-23	96.3
MS.gene049577.t1	AT4G26420	30.846	201	117	8	12	199	37	228	2.41e-22	94.7
MS.gene049577.t1	AT4G26420	30.846	201	117	8	12	199	25	216	3.67e-22	94.4

Find 54 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGCATTATTGGCCAAATCTT+TGG	0.196851	3.2:-58372594	None:intergenic
GCTGATTTAGGTTGCTCTTC+GGG	0.271061	3.2:+58371148	MS.gene049577:CDS
GCATTATTGGCCAAATCTTT+GGG	0.295693	3.2:-58372593	None:intergenic
TTCGGGGCCAAACACACTTT+TGG	0.318068	3.2:+58371165	MS.gene049577:CDS
AATGAAAGTGGCAGCTATAA+TGG	0.330658	3.2:+58371069	None:intergenic
TACCATCAACAATATCATTA+TGG	0.336487	3.2:-58373589	None:intergenic
GCATTAGGCACCCAAAGATT+TGG	0.343838	3.2:+58372583	MS.gene049577:intron
AGCTGATTTAGGTTGCTCTT+CGG	0.346101	3.2:+58371147	MS.gene049577:CDS
CTCCATAATGATATTGTTGA+TGG	0.373244	3.2:+58373587	MS.gene049577:CDS
TGTCTACTCTTGTAGAAATC+AGG	0.376072	3.2:-58371313	None:intergenic
TATGATGTTCAAGATATTAG+AGG	0.412683	3.2:-58371191	None:intergenic
ACTTCTATTCAAGAGGTACT+TGG	0.420566	3.2:+58372797	MS.gene049577:CDS
GAGGTGACCAAAAGTGTGTT+TGG	0.437326	3.2:-58371172	None:intergenic
TGATAGCCAATGTAGACAAT+AGG	0.444967	3.2:-58371440	None:intergenic
AAAGAAGTTGATATAATTAG+TGG	0.455446	3.2:-58371410	None:intergenic
TATTGTATTGCTCTTGTCAA+AGG	0.455467	3.2:+58373778	MS.gene049577:CDS
CCAAACCCGTCTATTAAAAG+AGG	0.459322	3.2:-58373671	None:intergenic
ATTGTATTGCTCTTGTCAAA+GGG	0.486886	3.2:+58373779	MS.gene049577:CDS
ATGATGGTACTAACATTCAT+TGG	0.488849	3.2:+58372752	MS.gene049577:CDS
CGGGTTTGGTGAAAATATCA+TGG	0.505556	3.2:+58373685	MS.gene049577:CDS
ATTCCTCCTATTGTCTACAT+TGG	0.506279	3.2:+58371434	MS.gene049577:CDS
TCATGGATGAATTGTTCTCA+AGG	0.510601	3.2:+58373702	MS.gene049577:CDS
TGAAATTACTTCTATTCAAG+AGG	0.513593	3.2:+58372790	MS.gene049577:CDS
TTTGCAGGGTTTAGTTGAAG+AGG	0.515370	3.2:+58373436	MS.gene049577:intron
ACAACCATTAAAAGTTGTGT+TGG	0.517417	3.2:-58371116	None:intergenic
TTGTTGATAGCAAAATGAGA+GGG	0.521512	3.2:+58373612	MS.gene049577:CDS
CAAGAGAAAGGAGAAAATGT+TGG	0.527738	3.2:+58371337	MS.gene049577:CDS
GAGAAAAGTGATAATGAAAG+TGG	0.534714	3.2:+58371057	None:intergenic
AAGAGTAGACAACAAGAGAA+AGG	0.535243	3.2:+58371325	MS.gene049577:CDS
AATAGTATCAGATGGTATGA+TGG	0.539204	3.2:+58372736	MS.gene049577:CDS
GGAAGTAAGACAAGTGATTG+AGG	0.541503	3.2:+58373505	MS.gene049577:CDS
TTTGAAATACAGGTGTCTCA+TGG	0.542446	3.2:-58371237	None:intergenic
AAATATGCTTTATACACTGA+TGG	0.545387	3.2:-58372662	None:intergenic
CTGATTTAGGTTGCTCTTCG+GGG	0.551359	3.2:+58371149	MS.gene049577:CDS
AAAGTTGTGTTGGACATCAA+CGG	0.558540	3.2:-58371106	None:intergenic
TGTCTTACTTCCTCTACAGT+AGG	0.562905	3.2:-58373494	None:intergenic
TAAATATTTCCCTTGTTGAG+TGG	0.563971	3.2:-58372620	None:intergenic
TAATGCAAAACCACTCAACA+AGG	0.577573	3.2:+58372610	MS.gene049577:CDS
TATTCAAGAGGTACTTGGCA+TGG	0.581041	3.2:+58372802	MS.gene049577:CDS
TGCTTCATAAATGCAACACC+CGG	0.583899	3.2:+58371364	MS.gene049577:CDS
TTCGAAGAAATAGTATCAGA+TGG	0.593783	3.2:+58372728	MS.gene049577:CDS
AAGAAGTTGATATAATTAGT+GGG	0.594084	3.2:-58371409	None:intergenic
TAGCCAATGTAGACAATAGG+AGG	0.595619	3.2:-58371437	None:intergenic
TCTACAGTAGGATGGTATGT+TGG	0.603625	3.2:-58373482	None:intergenic
AGACAAGTGATTGAGGCAGA+AGG	0.607082	3.2:+58373512	MS.gene049577:CDS
CATCAACAATATCATTATGG+AGG	0.614744	3.2:-58373586	None:intergenic
AACATACCATCCTACTGTAG+AGG	0.616142	3.2:+58373484	MS.gene049577:CDS
TTACTTCCTCTACAGTAGGA+TGG	0.618977	3.2:-58373490	None:intergenic
ATTGTTGATAGCAAAATGAG+AGG	0.619009	3.2:+58373611	MS.gene049577:CDS
TGGCATGGTACTCAACGAGA+TGG	0.637697	3.2:+58372817	MS.gene049577:CDS
TATGCTTTATACACTGATGG+AGG	0.653405	3.2:-58372659	None:intergenic
AATGCAAAACCACTCAACAA+GGG	0.683152	3.2:+58372611	MS.gene049577:CDS
TGTTGATAGCAAAATGAGAG+GGG	0.689070	3.2:+58373613	MS.gene049577:CDS
ACTCAACGAGATGGTCCAAG+AGG	0.710119	3.2:+58372826	MS.gene049577:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAAAAAAAAATTAATAAAAA+GGG	-	chr3.2:58371860-58371879	None:intergenic	0.0%
!!	TAAAAAAAAAATTAATAAAA+AGG	-	chr3.2:58371861-58371880	None:intergenic	0.0%
!!	TATAAATAATTTATATTATA+CGG	-	chr3.2:58372543-58372562	None:intergenic	0.0%
!!	AGTTAAAATAAATAAATATG+GGG	-	chr3.2:58371993-58372012	None:intergenic	10.0%
!!	TAAAACATTCTTATTAATTA+TGG	-	chr3.2:58373228-58373247	None:intergenic	10.0%
!	GGGGGGGGGGGGGGGGGGGG+GGG	-	chr3.2:58371971-58371990	None:intergenic	100.0%
!!	ATAAGGAATCTTTATAAAAA+AGG	-	chr3.2:58373414-58373433	None:intergenic	15.0%
!!	GATTAAAATGCAATAAATAA+GGG	-	chr3.2:58373182-58373201	None:intergenic	15.0%
!!	GTTAAAATAAATAAATATGG+GGG	-	chr3.2:58371992-58372011	None:intergenic	15.0%
!!	TGATTAAAATGCAATAAATA+AGG	-	chr3.2:58373183-58373202	None:intergenic	15.0%
!!	TTAAAATAAATAAATATGGG+GGG	-	chr3.2:58371991-58372010	None:intergenic	15.0%
!!	TTTCAAAACAAAAATCTTAT+CGG	+	chr3.2:58372905-58372924	MS.gene049577:intron	15.0%
!!!	ATTAATAGTGTTGATTTTAA+TGG	-	chr3.2:58373273-58373292	None:intergenic	15.0%
!!	AAAAACTAGTTAATCAATCA+TGG	+	chr3.2:58372320-58372339	MS.gene049577:intron	20.0%
!!	AAAGAGACAAAAAAAAAATC+AGG	-	chr3.2:58373116-58373135	None:intergenic	20.0%
!!	AAGGTTTAAACTATTGTAAA+AGG	-	chr3.2:58372983-58373002	None:intergenic	20.0%
!!	ATTGAACGACATTATATTAT+AGG	+	chr3.2:58373333-58373352	MS.gene049577:intron	20.0%
!!	GTTATTCACGTTTAAAAATA+TGG	+	chr3.2:58373043-58373062	MS.gene049577:intron	20.0%
!!	TAAAATAAATAAATATGGGG+GGG	-	chr3.2:58371990-58372009	None:intergenic	20.0%
!!	TTCTTATTAATTATGGTTAG+TGG	-	chr3.2:58373221-58373240	None:intergenic	20.0%
!!!	AAAGAAGTTGATATAATTAG+TGG	-	chr3.2:58371413-58371432	None:intergenic	20.0%
!!!	AAGAAGTTGATATAATTAGT+GGG	-	chr3.2:58371412-58371431	None:intergenic	20.0%
!!!	AGCAATGAAAACTTTTAAAA+TGG	+	chr3.2:58373550-58373569	MS.gene049577:CDS	20.0%
!!!	GATTTTGTTATTCAACAATA+GGG	+	chr3.2:58371503-58371522	MS.gene049577:intron	20.0%
!!!	GCAATGAAAACTTTTAAAAT+GGG	+	chr3.2:58373551-58373570	MS.gene049577:CDS	20.0%
!!!	TAGATTACCTTATAGTTTTT+AGG	+	chr3.2:58372031-58372050	MS.gene049577:intron	20.0%
!!!	TATTTGAAGTTCATCTTTTA+TGG	+	chr3.2:58372561-58372580	MS.gene049577:intron	20.0%
!!!	TCTTTGTTCTTTAATTTGAT+TGG	+	chr3.2:58372366-58372385	MS.gene049577:intron	20.0%
!!!	TGATTGATTAACTAGTTTTT+AGG	-	chr3.2:58372320-58372339	None:intergenic	20.0%
!!!	TTGAGAAAAATTTGAAATAC+AGG	-	chr3.2:58371250-58371269	None:intergenic	20.0%
!	AAAATAAATAAATATGGGGG+GGG	-	chr3.2:58371989-58372008	None:intergenic	25.0%
!	AAATATGCTTTATACACTGA+TGG	-	chr3.2:58372665-58372684	None:intergenic	25.0%
!	AACGTGAATAACTAGTTATA+TGG	-	chr3.2:58373035-58373054	None:intergenic	25.0%
!	AACTATTGTAAAAGGAAACT+AGG	-	chr3.2:58372975-58372994	None:intergenic	25.0%
!	AATAAATAAGGGTTTGTAAG+TGG	-	chr3.2:58373171-58373190	None:intergenic	25.0%
!	ACGGAATATTACTTAAAAAC+TGG	-	chr3.2:58372524-58372543	None:intergenic	25.0%
!	ACTATTGTAAAAGGAAACTA+GGG	-	chr3.2:58372974-58372993	None:intergenic	25.0%
!	AGAATCACAAACAAATTTCT+AGG	+	chr3.2:58372160-58372179	MS.gene049577:intron	25.0%
!	ATTTACGCCTAAAAACTATA+AGG	-	chr3.2:58372041-58372060	None:intergenic	25.0%
!	CCAAGATTTAAATTTAAGCA+TGG	+	chr3.2:58371481-58371500	MS.gene049577:intron	25.0%
!	CCATGCTTAAATTTAAATCT+TGG	-	chr3.2:58371484-58371503	None:intergenic	25.0%
!	TACCATCAACAATATCATTA+TGG	-	chr3.2:58373592-58373611	None:intergenic	25.0%
!	TATGATGTTCAAGATATTAG+AGG	-	chr3.2:58371194-58371213	None:intergenic	25.0%
!	TGAAATTACTTCTATTCAAG+AGG	+	chr3.2:58372790-58372809	MS.gene049577:CDS	25.0%
!!	AAAGATTCCTTATAATTTGC+AGG	+	chr3.2:58373421-58373440	MS.gene049577:intron	25.0%
!!	AACAAACTATGAGTTTTACA+CGG	-	chr3.2:58373310-58373329	None:intergenic	25.0%
!!	AAGATTCCTTATAATTTGCA+GGG	+	chr3.2:58373422-58373441	MS.gene049577:intron	25.0%
!!	CACTTTCTTTTTGTCTTTTA+AGG	+	chr3.2:58372266-58372285	MS.gene049577:intron	25.0%
!!	CACTTTCTTTTTGTCTTTTA+AGG	-	chr3.2:58372285-58372266	None:intergenic	25.0%
!!	TTCAATTGAGATTCTAGTTA+AGG	+	chr3.2:58372203-58372222	MS.gene049577:intron	25.0%
!!	TTTGAACCTCTTTTAATAGA+CGG	+	chr3.2:58373665-58373684	MS.gene049577:CDS	25.0%
!!	TTTGTTTGTGATTCTAGTTA+AGG	-	chr3.2:58372155-58372174	None:intergenic	25.0%
!!!	GAAAACTTTTAAAATGGGTT+GGG	+	chr3.2:58373556-58373575	MS.gene049577:CDS	25.0%
!!!	GGATTTTGTTATTCAACAAT+AGG	+	chr3.2:58371502-58371521	MS.gene049577:intron	25.0%
!!!	TGAAAACTTTTAAAATGGGT+TGG	+	chr3.2:58373555-58373574	MS.gene049577:CDS	25.0%
!!!	TGTTTTAAAGTAGCTGATTT+AGG	+	chr3.2:58371136-58371155	MS.gene049577:CDS	25.0%
	AAATAAATAAATATGGGGGG+GGG	-	chr3.2:58371988-58372007	None:intergenic	30.0%
	AACAAAGATAAAGAGAGTAG+AGG	-	chr3.2:58372354-58372373	None:intergenic	30.0%
	AATAGTATCAGATGGTATGA+TGG	+	chr3.2:58372736-58372755	MS.gene049577:CDS	30.0%
	AATGATAGACATGTGATATG+AGG	-	chr3.2:58372931-58372950	None:intergenic	30.0%
	ACAACCATTAAAAGTTGTGT+TGG	-	chr3.2:58371119-58371138	None:intergenic	30.0%
	ACTAAACCCTGCAAATTATA+AGG	-	chr3.2:58373431-58373450	None:intergenic	30.0%
	AGAAAACATCTATTGTGAGA+CGG	-	chr3.2:58373091-58373110	None:intergenic	30.0%
	AGAACAATCATTAACCAAGA+AGG	+	chr3.2:58371574-58371593	MS.gene049577:intron	30.0%
	AGGCTCATATCATATTATCA+AGG	+	chr3.2:58371594-58371613	MS.gene049577:intron	30.0%
	ATCGTTCATTTGAGAACAAA+CGG	+	chr3.2:58371691-58371710	MS.gene049577:intron	30.0%
	ATGATGGTACTAACATTCAT+TGG	+	chr3.2:58372752-58372771	MS.gene049577:CDS	30.0%
	ATTGTATTGCTCTTGTCAAA+GGG	+	chr3.2:58373779-58373798	MS.gene049577:CDS	30.0%
	CAAAGCTTATATTTACCTCT+TGG	-	chr3.2:58372844-58372863	None:intergenic	30.0%
	CATCAACAATATCATTATGG+AGG	-	chr3.2:58373589-58373608	None:intergenic	30.0%
	CTCCATAATGATATTGTTGA+TGG	+	chr3.2:58373587-58373606	MS.gene049577:CDS	30.0%
	GGTTAATGATTGTTCTTAGT+TGG	-	chr3.2:58371570-58371589	None:intergenic	30.0%
	TAAATATTTCCCTTGTTGAG+TGG	-	chr3.2:58372623-58372642	None:intergenic	30.0%
	TAATATGATATGAGCCTTCT+TGG	-	chr3.2:58371591-58371610	None:intergenic	30.0%
	TATTGTATTGCTCTTGTCAA+AGG	+	chr3.2:58373778-58373797	MS.gene049577:CDS	30.0%
	TTCGAAGAAATAGTATCAGA+TGG	+	chr3.2:58372728-58372747	MS.gene049577:CDS	30.0%
!	AGTTCATCTTTTATGGCATT+AGG	+	chr3.2:58372568-58372587	MS.gene049577:intron	30.0%
!	ATGTCCAACACAACTTTTAA+TGG	+	chr3.2:58371112-58371131	MS.gene049577:CDS	30.0%
!	TTGAACCTCTTTTAATAGAC+GGG	+	chr3.2:58373666-58373685	MS.gene049577:CDS	30.0%
!!	AGTAATGTTTTAGACCAAGT+TGG	+	chr3.2:58371543-58371562	MS.gene049577:intron	30.0%
!!	ATTGTTGATAGCAAAATGAG+AGG	+	chr3.2:58373611-58373630	MS.gene049577:CDS	30.0%
!!	CTTAGTCGTACAATTTTGAT+TGG	+	chr3.2:58371750-58371769	MS.gene049577:intron	30.0%
!!	TTGTTGATAGCAAAATGAGA+GGG	+	chr3.2:58373612-58373631	MS.gene049577:CDS	30.0%
	AAAATCGACAAGACAACATG+TGG	-	chr3.2:58372480-58372499	None:intergenic	35.0%
	AAAGTTGTGTTGGACATCAA+CGG	-	chr3.2:58371109-58371128	None:intergenic	35.0%
	AAATCAGAATAGAGAAGGTG+TGG	-	chr3.2:58371636-58371655	None:intergenic	35.0%
	AACATTACTTGACCATCCTA+AGG	-	chr3.2:58371532-58371551	None:intergenic	35.0%
	AAGAGTAGACAACAAGAGAA+AGG	+	chr3.2:58371325-58371344	MS.gene049577:CDS	35.0%
	AATAAATAAATATGGGGGGG+GGG	-	chr3.2:58371987-58372006	None:intergenic	35.0%
	AATGCAAAACCACTCAACAA+GGG	+	chr3.2:58372611-58372630	MS.gene049577:CDS	35.0%
	ACACCAAATCAGAATAGAGA+AGG	-	chr3.2:58371641-58371660	None:intergenic	35.0%
	ACACCTTCTCTATTCTGATT+TGG	+	chr3.2:58371635-58371654	MS.gene049577:intron	35.0%
	ACATTACTTGACCATCCTAA+GGG	-	chr3.2:58371531-58371550	None:intergenic	35.0%
	AGTCGTCCATAAAAATTTCC+GGG	-	chr3.2:58371385-58371404	None:intergenic	35.0%
	ATTCCTCCTATTGTCTACAT+TGG	+	chr3.2:58371434-58371453	MS.gene049577:CDS	35.0%
	CAAGAGAAAGGAGAAAATGT+TGG	+	chr3.2:58371337-58371356	MS.gene049577:CDS	35.0%
	GAGTCGTCCATAAAAATTTC+CGG	-	chr3.2:58371386-58371405	None:intergenic	35.0%
	GCATTATTGGCCAAATCTTT+GGG	-	chr3.2:58372596-58372615	None:intergenic	35.0%
	TAATGCAAAACCACTCAACA+AGG	+	chr3.2:58372610-58372629	MS.gene049577:CDS	35.0%
	TATGCTTTATACACTGATGG+AGG	-	chr3.2:58372662-58372681	None:intergenic	35.0%
	TCATGGATGAATTGTTCTCA+AGG	+	chr3.2:58373702-58373721	MS.gene049577:CDS	35.0%
	TGATAGCCAATGTAGACAAT+AGG	-	chr3.2:58371443-58371462	None:intergenic	35.0%
	TGCATTATTGGCCAAATCTT+TGG	-	chr3.2:58372597-58372616	None:intergenic	35.0%
	TGTCTACTCTTGTAGAAATC+AGG	-	chr3.2:58371316-58371335	None:intergenic	35.0%
	TTATGATCCTACTTGATCGA+TGG	-	chr3.2:58371820-58371839	None:intergenic	35.0%
	TTCTAGGTGAAATTGCAATG+AGG	+	chr3.2:58372176-58372195	MS.gene049577:intron	35.0%
!	ATACACTTGCTTGCTAGATT+TGG	+	chr3.2:58372396-58372415	MS.gene049577:intron	35.0%
!	TTTGAAATACAGGTGTCTCA+TGG	-	chr3.2:58371240-58371259	None:intergenic	35.0%
!!	ACTTCTATTCAAGAGGTACT+TGG	+	chr3.2:58372797-58372816	MS.gene049577:CDS	35.0%
!!	GTTGAGTGGTTTTGCATTAT+TGG	-	chr3.2:58372609-58372628	None:intergenic	35.0%
!!	TGTTGATAGCAAAATGAGAG+GGG	+	chr3.2:58373613-58373632	MS.gene049577:CDS	35.0%
	AAAAACAGCTCTGTGGTACT+TGG	-	chr3.2:58373648-58373667	None:intergenic	40.0%
	AAACATCTATTGTGAGACGG+AGG	-	chr3.2:58373088-58373107	None:intergenic	40.0%
	AACATACCATCCTACTGTAG+AGG	+	chr3.2:58373484-58373503	MS.gene049577:CDS	40.0%
	ACTTGATCGATGGTGATAGA+AGG	-	chr3.2:58371810-58371829	None:intergenic	40.0%
	AGAAAGCAGATTTCCTGAAC+AGG	-	chr3.2:58371787-58371806	None:intergenic	40.0%
	ATAAATAAATATGGGGGGGG+GGG	-	chr3.2:58371986-58372005	None:intergenic	40.0%
	CCAAACCCGTCTATTAAAAG+AGG	-	chr3.2:58373674-58373693	None:intergenic	40.0%
	GGAAGTAAGACAAGTGATTG+AGG	+	chr3.2:58373505-58373524	MS.gene049577:CDS	40.0%
	TAGCCAATGTAGACAATAGG+AGG	-	chr3.2:58371440-58371459	None:intergenic	40.0%
	TCTACAGTAGGATGGTATGT+TGG	-	chr3.2:58373485-58373504	None:intergenic	40.0%
	TCTATCACCATCGATCAAGT+AGG	+	chr3.2:58371810-58371829	MS.gene049577:intron	40.0%
	TGCTTCATAAATGCAACACC+CGG	+	chr3.2:58371364-58371383	MS.gene049577:CDS	40.0%
	TGTCTTACTTCCTCTACAGT+AGG	-	chr3.2:58373497-58373516	None:intergenic	40.0%
	TGTTCTTAGTTGGACCAACT+TGG	-	chr3.2:58371560-58371579	None:intergenic	40.0%
	TTACTTCCTCTACAGTAGGA+TGG	-	chr3.2:58373493-58373512	None:intergenic	40.0%
	TTTGCAGGGTTTAGTTGAAG+AGG	+	chr3.2:58373436-58373455	MS.gene049577:intron	40.0%
!	GCAACACCCGGAAATTTTTA+TGG	+	chr3.2:58371376-58371395	MS.gene049577:CDS	40.0%
!	GTGTTGAGAGTTGACTTCAA+CGG	-	chr3.2:58371940-58371959	None:intergenic	40.0%
!	TGTTGAGAGTTGACTTCAAC+GGG	-	chr3.2:58371939-58371958	None:intergenic	40.0%
!	TTCAACAATAGGGTACCCTT+AGG	+	chr3.2:58371513-58371532	MS.gene049577:intron	40.0%
!	TTGCTTGCTAGATTTGGTCT+TGG	+	chr3.2:58372402-58372421	MS.gene049577:intron	40.0%
!!	AGCTGATTTAGGTTGCTCTT+CGG	+	chr3.2:58371147-58371166	MS.gene049577:CDS	40.0%
!!	CCTCTTTTAATAGACGGGTT+TGG	+	chr3.2:58373671-58373690	MS.gene049577:CDS	40.0%
!!	CGGGTTTGGTGAAAATATCA+TGG	+	chr3.2:58373685-58373704	MS.gene049577:CDS	40.0%
!!	TATTCAAGAGGTACTTGGCA+TGG	+	chr3.2:58372802-58372821	MS.gene049577:CDS	40.0%
	AGACAAGTGATTGAGGCAGA+AGG	+	chr3.2:58373512-58373531	MS.gene049577:CDS	45.0%
	CAACACTCAACACCATGGAT+GGG	+	chr3.2:58371909-58371928	MS.gene049577:intron	45.0%
	CAACTCTCAACACCATGGAT+GGG	+	chr3.2:58371947-58371966	MS.gene049577:intron	45.0%
	GAAGTCAACTCTCAACACCA+TGG	+	chr3.2:58371942-58371961	MS.gene049577:intron	45.0%
	GAGATCAACACTCAACACCA+TGG	+	chr3.2:58371904-58371923	MS.gene049577:intron	45.0%
	GAGGTTCAAAAACAGCTCTG+TGG	-	chr3.2:58373655-58373674	None:intergenic	45.0%
	GCATTAGGCACCCAAAGATT+TGG	+	chr3.2:58372583-58372602	MS.gene049577:intron	45.0%
	TAAATAAATATGGGGGGGGG+GGG	-	chr3.2:58371985-58372004	None:intergenic	45.0%
	TCAACACTCAACACCATGGA+TGG	+	chr3.2:58371908-58371927	MS.gene049577:intron	45.0%
	TCAACTCTCAACACCATGGA+TGG	+	chr3.2:58371946-58371965	MS.gene049577:intron	45.0%
!	ACAATAGGGTACCCTTAGGA+TGG	+	chr3.2:58371517-58371536	MS.gene049577:intron	45.0%
!	GAGGTGACCAAAAGTGTGTT+TGG	-	chr3.2:58371175-58371194	None:intergenic	45.0%
!	GTTGAGAGTTGACTTCAACG+GGG	-	chr3.2:58371938-58371957	None:intergenic	45.0%
!!	CTGATTTAGGTTGCTCTTCG+GGG	+	chr3.2:58371149-58371168	MS.gene049577:CDS	45.0%
!!	GCTGATTTAGGTTGCTCTTC+GGG	+	chr3.2:58371148-58371167	MS.gene049577:CDS	45.0%
!!	AAAGTTAAAATAAATAAATA+TGG	-	chr3.2:58371995-58372014	None:intergenic	5.0%
!!	AAGTTAAAATAAATAAATAT+GGG	-	chr3.2:58371994-58372013	None:intergenic	5.0%
!!	TATCAATATAAATTTATAAA+AGG	-	chr3.2:58373002-58373021	None:intergenic	5.0%
!!!	AATGTTTAATTTTTATTTTT+AGG	-	chr3.2:58372887-58372906	None:intergenic	5.0%
	AAATAAATATGGGGGGGGGG+GGG	-	chr3.2:58371984-58372003	None:intergenic	50.0%
	ACTCAACGAGATGGTCCAAG+AGG	+	chr3.2:58372826-58372845	MS.gene049577:CDS	50.0%
	TGGCATGGTACTCAACGAGA+TGG	+	chr3.2:58372817-58372836	MS.gene049577:CDS	50.0%
!	GAGAAGGTGTGGATCTAGTG+TGG	-	chr3.2:58371625-58371644	None:intergenic	50.0%
!	TTCGGGGCCAAACACACTTT+TGG	+	chr3.2:58371165-58371184	MS.gene049577:CDS	50.0%
	AATAAATATGGGGGGGGGGG+GGG	-	chr3.2:58371983-58372002	None:intergenic	55.0%
	GGACGACTCACATCCTGTTC+AGG	+	chr3.2:58371771-58371790	MS.gene049577:intron	55.0%
	TCAACGGGGTAACCCATCCA+TGG	-	chr3.2:58371924-58371943	None:intergenic	55.0%
	ATAAATATGGGGGGGGGGGG+GGG	-	chr3.2:58371982-58372001	None:intergenic	60.0%
	TAAATATGGGGGGGGGGGGG+GGG	-	chr3.2:58371981-58372000	None:intergenic	65.0%
	AAATATGGGGGGGGGGGGGG+GGG	-	chr3.2:58371980-58371999	None:intergenic	70.0%
	AATATGGGGGGGGGGGGGGG+GGG	-	chr3.2:58371979-58371998	None:intergenic	75.0%
!	ATATGGGGGGGGGGGGGGGG+GGG	-	chr3.2:58371978-58371997	None:intergenic	80.0%
!	GGGGGGGGGGGACCCATCCA+TGG	-	chr3.2:58371962-58371981	None:intergenic	80.0%
!	TATGGGGGGGGGGGGGGGGG+GGG	-	chr3.2:58371977-58371996	None:intergenic	85.0%
!	ATGGGGGGGGGGGGGGGGGG+GGG	-	chr3.2:58371976-58371995	None:intergenic	90.0%
!	TGGGGGGGGGGGGGGGGGGG+GGG	-	chr3.2:58371975-58371994	None:intergenic	95.0%

Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	58371070	58373808	58371070	ID=MS.gene049577
chr3.2	mRNA	58371070	58373808	58371070	ID=MS.gene049577.t1;Parent=MS.gene049577
chr3.2	exon	58371070	58371465	58371070	ID=MS.gene049577.t1.exon1;Parent=MS.gene049577.t1
chr3.2	CDS	58371070	58371465	58371070	ID=cds.MS.gene049577.t1;Parent=MS.gene049577.t1
chr3.2	exon	58372590	58372847	58372590	ID=MS.gene049577.t1.exon2;Parent=MS.gene049577.t1
chr3.2	CDS	58372590	58372847	58372590	ID=cds.MS.gene049577.t1;Parent=MS.gene049577.t1
chr3.2	exon	58373443	58373808	58373443	ID=MS.gene049577.t1.exon3;Parent=MS.gene049577.t1
chr3.2	CDS	58373443	58373808	58373443	ID=cds.MS.gene049577.t1;Parent=MS.gene049577.t1

Gene Sequence

>MS.gene049577

ATGAAAGTGGCAGCTATAATGGAAGAGAATTTAAAACCGTTGATGTCCAACACAACTTTTAATGGTTGTTTTAAAGTAGCTGATTTAGGTTGCTCTTCGGGGCCAAACACACTTTTGGTCACCTCTAATATCTTGAACATCATACGTGAAATTAGCTTGAAGTTAAACCATGAGACACCTGTATTTCAAATTTTTCTCAATGATTTATTTGAAAATGATTTTAGTACAATCTTCAAGTTACTTCCTGATTTCTACAAGAGTAGACAACAAGAGAAAGGAGAAAATGTTGGAGCATGCTTCATAAATGCAACACCCGGAAATTTTTATGGACGACTCTTTCCCACTAATTATATCAACTTCTTTCATTCCTCCTATTGTCTACATTGGCTATCACAAGTAAGTACTACAAAACCAAGATTTAAATTTAAGCATGGATTTTGTTATTCAACAATAGGGTACCCTTAGGATGGTCAAGTAATGTTTTAGACCAAGTTGGTCCAACTAAGAACAATCATTAACCAAGAAGGCTCATATCATATTATCAAGGTCTAGCCACACTAGATCCACACCTTCTCTATTCTGATTTGGTGTTGTAAAAAATGAACGTAGTTTTCGATCTCGATCGTTCATTTGAGAACAAACGGATAAAATTGAAAACTGTGTCTTTTTAATAAAATGATCTTAGTCGTACAATTTTGATTGGACGACTCACATCCTGTTCAGGAAATCTGCTTTCTCCTTCTATCACCATCGATCAAGTAGGATCATAACAACAAAGCATAACTAACCCTTTTTATTAATTTTTTTTTTAAAGAACTAACTCATATACAAGATGAGATCAACACTCAACACCATGGATGGGTTACCCCGTTGAAGTCAACTCTCAACACCATGGATGGGTCCCCCCCCCCCCCCCCCCCCCCCATATTTATTTATTTTAACTTTATATGATGTTGTATAATAGATTACCTTATAGTTTTTAGGCGTAAATGCATTAATCTTTTACTAAAATCCTTAAAAGACAAAAAGAAAGTGAAGTTTTAATTTGTGTGCAACTTACAAAAAAAAAAAAAAATCATAATCCTTAACTAGAATCACAAACAAATTTCTAGGTGAAATTGCAATGAGGAATCTTCAATTGAGATTCTAGTTAAGGATTATGATTTTTTTTGTGCGTTGCATACAAATTAAAACTTCACTTTCTTTTTGTCTTTTAAGGATTTTAGAAAAAGATTAATGCATTTAAACCTAAAAACTAGTTAATCAATCATGGTGTTTGTTCCTCTACTCTCTTTATCTTTGTTCTTTAATTTGATTGGATTTGTTATACACTTGCTTGCTAGATTTGGTCTTGGTTGAATATTGTTGCTTTGACTGTTTTGTTGTTTATTGCAATCTTTATTTGTTCCACATGTTGTCTTGTCGATTTTGCACAAGAGTTCGAATTCACACCAGTTTTTAAGTAATATTCCGTATAATATAAATTATTTATATTTGAAGTTCATCTTTTATGGCATTAGGCACCCAAAGATTTGGCCAATAATGCAAAACCACTCAACAAGGGAAATATTTACATATCAAGAACAAGTCCTCCATCAGTGTATAAAGCATATTTTGTGCAATTTGCAAGAGATTTCAAGTGTTTTCTAAAGTCACGCTTCGAAGAAATAGTATCAGATGGTATGATGGTACTAACATTCATTGGCAGAGAAACATCAAATGAAATTACTTCTATTCAAGAGGTACTTGGCATGGTACTCAACGAGATGGTCCAAGAGGTAAATATAAGCTTTGATAGCAAGTAAGAAAGAGTGCCTAAAAATAAAAATTAAACATTTCAAAACAAAAATCTTATCGGCCTCATATCACATGTCTATCATTTCACACACACACTTTAAATACCCTAGTTTCCTTTTACAATAGTTTAAACCTTTTATAAATTTATATTGATATGATAAAATACCATATAACTAGTTATTCACGTTTAAAAATATGGTTGATTCAGATGAGTACTTCCTCCGTCTCACAATAGATGTTTTCTTTCCTGATTTTTTTTTTGTCTCTTTTATAATATAGATACAACATTTAATACTTTTCTCCACTTACAAACCCTTATTTATTGCATTTTAATCATCTAAAACTATTATTCCACTAACCATAATTAATAAGAATGTTTTAGAAAATGATATTGTACATTTTGCCATTAAAATCAACACTATTAATCATTTCTTTAATTACCGTGTAAAACTCATAGTTTGTTATTATTGAACGACATTATATTATAGGAGACTTAATTTACACAACAAAATAAATATTTAGTTTTTCTTTAACTTTTGATTTTCCTTTTTTATAAAGATTCCTTATAATTTGCAGGGTTTAGTTGAAGAGGAGAAATTAGACTTGTTTAATTTTCCAACATACCATCCTACTGTAGAGGAAGTAAGACAAGTGATTGAGGCAGAAGGATCTTTTACACTTCAAGCAATGAAAACTTTTAAAATGGGTTGGGATGCAAACCTCCATAATGATATTGTTGATGGTATTGTTGATAGCAAAATGAGAGGGGAGCTTATAGCCAAGTACCACAGAGCTGTTTTTGAACCTCTTTTAATAGACGGGTTTGGTGAAAATATCATGGATGAATTGTTCTCAAGGTTTGCTAAGCTGCTTGCACAACTCATTGAGTTAGAGACATTAGAGTTTACTAATATTGTATTGCTCTTGTCAAAGGGTCTTTGA

Protein sequence

>MS.gene049577.t1

MKVAAIMEENLKPLMSNTTFNGCFKVADLGCSSGPNTLLVTSNILNIIREISLKLNHETPVFQIFLNDLFENDFSTIFKLLPDFYKSRQQEKGENVGACFINATPGNFYGRLFPTNYINFFHSSYCLHWLSQAPKDLANNAKPLNKGNIYISRTSPPSVYKAYFVQFARDFKCFLKSRFEEIVSDGMMVLTFIGRETSNEITSIQEVLGMVLNEMVQEGLVEEEKLDLFNFPTYHPTVEEVRQVIEAEGSFTLQAMKTFKMGWDANLHNDIVDGIVDSKMRGELIAKYHRAVFEPLLIDGFGENIMDELFSRFAKLLAQLIELETLEFTNIVLLLSKGL