AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05137


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 64 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCATTATTGGCCAAATCTT+TGG 0.196851 3.4:-64577921 None:intergenic
TGCAAATAATTCCTTATTAC+AGG 0.222824 3.4:+64575343 MS.gene05137:CDS
GCTGATTTAGGTTGCTCTTC+GGG 0.271061 3.4:+64576279 MS.gene05137:CDS
GCATTATTGGCCAAATCTTT+GGG 0.295693 3.4:-64577920 None:intergenic
TGTATACTCTTGTAGAAATC+AGG 0.313909 3.4:-64576444 None:intergenic
TTCGGGGCCAAACACACTTT+TGG 0.318068 3.4:+64576296 MS.gene05137:CDS
TAAATACTATACCTGTAATA+AGG 0.330483 3.4:-64575354 None:intergenic
AATGAAAGTGGCAGCTATAA+TGG 0.330658 3.4:+64576200 MS.gene05137:CDS
TACCATCAACAATATCATTA+TGG 0.336487 3.4:-64578906 None:intergenic
GCATTAGGCACCCAAAGATT+TGG 0.343838 3.4:+64577910 MS.gene05137:intron
AGCTGATTTAGGTTGCTCTT+CGG 0.346101 3.4:+64576278 MS.gene05137:CDS
TTGATATAAATTTGAAATAC+AGG 0.349232 3.4:-64576378 None:intergenic
CTCCATAATGATATTGTTGA+TGG 0.373244 3.4:+64578904 MS.gene05137:CDS
TATGATGTTCAAGATATTAG+AGG 0.412683 3.4:-64576322 None:intergenic
ACTTCTATTCAAGAGGTACT+TGG 0.420566 3.4:+64578124 MS.gene05137:CDS
GAGGTGACCAAAAGTGTGTT+TGG 0.437326 3.4:-64576303 None:intergenic
TGATAGCCAATGTAGACAAT+AGG 0.444967 3.4:-64576571 None:intergenic
AAAGAAGTTGATATAATTAG+TGG 0.455446 3.4:-64576541 None:intergenic
CCAAACCCGTCTATTAAAAG+AGG 0.459322 3.4:-64578988 None:intergenic
ATTGTATTGCTCTTGACAAA+GGG 0.486886 3.4:+64579096 MS.gene05137:CDS
ATGATGGTACTAACATTCAT+TGG 0.488849 3.4:+64578079 MS.gene05137:CDS
TTTGTAGGGTTTAGTTGAAG+AGG 0.496525 3.4:+64578753 MS.gene05137:intron
CGGGTTTGGTGAAAATATCA+TGG 0.505556 3.4:+64579002 MS.gene05137:CDS
ATTCCTCCTATTGTCTACAT+TGG 0.506279 3.4:+64576565 MS.gene05137:CDS
TATTGTATTGCTCTTGACAA+AGG 0.506950 3.4:+64579095 MS.gene05137:CDS
TCATGGATGAATTGTTCTCA+AGG 0.510601 3.4:+64579019 MS.gene05137:CDS
TGAAATTACTTCTATTCAAG+AGG 0.513593 3.4:+64578117 MS.gene05137:CDS
ACAACCATTAAAAGTTGTGT+TGG 0.517417 3.4:-64576247 None:intergenic
TTGTTGATAGCAAAATGAGA+GGG 0.521512 3.4:+64578929 MS.gene05137:CDS
CAAGAGAAAGGAGAAAATGT+TGG 0.527738 3.4:+64576468 MS.gene05137:CDS
GAGAAAAGTGATAATGAAAG+TGG 0.534714 3.4:+64576188 MS.gene05137:intron
AAGAGTATACAACAAGAGAA+AGG 0.535416 3.4:+64576456 MS.gene05137:CDS
AATAGTATCAGATGGTATGA+TGG 0.539204 3.4:+64578063 MS.gene05137:CDS
GGAAGTAAGACAAGTGATTG+AGG 0.541503 3.4:+64578822 MS.gene05137:CDS
TTTGAAATACAGGTGTCTCA+TGG 0.549266 3.4:-64576368 None:intergenic
CTGATTTAGGTTGCTCTTCG+GGG 0.551359 3.4:+64576280 MS.gene05137:CDS
AAAGTTGTGTTGGACATCAA+CGG 0.558540 3.4:-64576237 None:intergenic
TGTCTTACTTCCTCTACAGT+AGG 0.562905 3.4:-64578811 None:intergenic
GAACGAGTCCTTCACATGAA+AGG 0.563452 3.4:+64575299 MS.gene05137:CDS
TAAATATTTCCCTTGTTGAG+TGG 0.563971 3.4:-64577947 None:intergenic
GTATACTCTTGTAGAAATCA+GGG 0.567996 3.4:-64576443 None:intergenic
TAATGCAAAACCACTCAACA+AGG 0.577573 3.4:+64577937 MS.gene05137:CDS
TATTCAAGAGGTACTTGGCA+TGG 0.581041 3.4:+64578129 MS.gene05137:CDS
TGCTTCATAAATGCAACACC+CGG 0.583899 3.4:+64576495 MS.gene05137:CDS
CCTTCACATGAAAGGTGGTG+TGG 0.586220 3.4:+64575307 MS.gene05137:CDS
CTTCACATGAAAGGTGGTGT+GGG 0.589863 3.4:+64575308 MS.gene05137:CDS
CCACACCACCTTTCATGTGA+AGG 0.590814 3.4:-64575307 None:intergenic
TTCGAAGAAATAGTATCAGA+TGG 0.593783 3.4:+64578055 MS.gene05137:CDS
AAGAAGTTGATATAATTAGT+GGG 0.594084 3.4:-64576540 None:intergenic
TAGCCAATGTAGACAATAGG+AGG 0.595619 3.4:-64576568 None:intergenic
TCTACAGTAGGATGGTATGT+TGG 0.603625 3.4:-64578799 None:intergenic
AGACAAGTGATTGAGGCAGA+AGG 0.607082 3.4:+64578829 MS.gene05137:CDS
AAATATGCTTTATACACCGA+TGG 0.609341 3.4:-64577989 None:intergenic
ATCAAGAACAAGTCCTCCAT+CGG 0.612922 3.4:+64577973 MS.gene05137:CDS
CATCAACAATATCATTATGG+AGG 0.614744 3.4:-64578903 None:intergenic
AACATACCATCCTACTGTAG+AGG 0.616142 3.4:+64578801 MS.gene05137:CDS
TTACTTCCTCTACAGTAGGA+TGG 0.618977 3.4:-64578807 None:intergenic
ATTGTTGATAGCAAAATGAG+AGG 0.619009 3.4:+64578928 MS.gene05137:CDS
TGGCATGGTACTCAACGAGA+TGG 0.637697 3.4:+64578144 MS.gene05137:CDS
TATGCTTTATACACCGATGG+AGG 0.647555 3.4:-64577986 None:intergenic
CGAGTCCTTCACATGAAAGG+TGG 0.652095 3.4:+64575302 MS.gene05137:CDS
AATGCAAAACCACTCAACAA+GGG 0.683152 3.4:+64577938 MS.gene05137:CDS
TGTTGATAGCAAAATGAGAG+GGG 0.689070 3.4:+64578930 MS.gene05137:CDS
ACTCAACGAGATGGTCCAAG+AGG 0.710119 3.4:+64578153 MS.gene05137:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAAATTAATAAAAA+GGG - chr3.4:64576991-64577010 None:intergenic 0.0%
!! TATAAATAATTTATATTATA+CGG - chr3.4:64577870-64577889 None:intergenic 0.0%
!! TTAAAAAAAAATTAATAAAA+AGG - chr3.4:64576992-64577011 None:intergenic 0.0%
!!! TTATAAATTATTTTATATTT+AGG - chr3.4:64575449-64575468 None:intergenic 0.0%
!! AGTTAAAATAAATAAATATG+GGG - chr3.4:64577317-64577336 None:intergenic 10.0%
! CCCCCCCCCCCCCCCCCCCC+CGG + chr3.4:64577104-64577123 MS.gene05137:intron 100.0%
! CCCCCCCCCCCCCCCCCCCC+GGG + chr3.4:64577104-64577123 MS.gene05137:intron 100.0%
! CCCGGGGGGGGGGGGGGGGG+GGG - chr3.4:64577122-64577141 None:intergenic 100.0%
! CCGGGGGGGGGGGGGGGGGG+GGG - chr3.4:64577121-64577140 None:intergenic 100.0%
! CGGGGGGGGGGGGGGGGGGG+GGG - chr3.4:64577120-64577139 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr3.4:64577104-64577123 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+TGG - chr3.4:64577104-64577123 None:intergenic 100.0%
!! AATGAATCTATAATTAGATA+TGG - chr3.4:64575410-64575429 None:intergenic 15.0%
!! ATAAGGAATCTTTATAAAAA+AGG - chr3.4:64578731-64578750 None:intergenic 15.0%
!! GATTAAAATGCAATAAATAA+GGG - chr3.4:64578505-64578524 None:intergenic 15.0%
!! GTTAAAATAAATAAATATGG+GGG - chr3.4:64577316-64577335 None:intergenic 15.0%
!! GTTAATCACATTTAAAAATA+TGG + chr3.4:64578369-64578388 MS.gene05137:intron 15.0%
!! TAGATATTTATGAAGATATT+AGG - chr3.4:64576069-64576088 None:intergenic 15.0%
!! TGATTAAAATGCAATAAATA+AGG - chr3.4:64578506-64578525 None:intergenic 15.0%
!! TTAAAATAAATAAATATGGG+GGG - chr3.4:64577315-64577334 None:intergenic 15.0%
!! TTTCAAAACAAAAATCTTAT+CGG + chr3.4:64578232-64578251 MS.gene05137:intron 15.0%
!!! ATTAATAGTGTTGATTTTAA+TGG - chr3.4:64578590-64578609 None:intergenic 15.0%
!!! TTGATATAAATTTGAAATAC+AGG - chr3.4:64576381-64576400 None:intergenic 15.0%
!! AAAAACTAGTTAATCAATCA+TGG + chr3.4:64577647-64577666 MS.gene05137:intron 20.0%
!! AAACTTCTTAACATATCATA+AGG - chr3.4:64575739-64575758 None:intergenic 20.0%
!! AAGGTTTAAACTATTGTAAA+AGG - chr3.4:64578309-64578328 None:intergenic 20.0%
!! AATCTATAATTAGATATGGA+AGG - chr3.4:64575406-64575425 None:intergenic 20.0%
!! ATTACCTTAAAAAAAGGAAA+AGG - chr3.4:64575870-64575889 None:intergenic 20.0%
!! ATTGAACGACATTATATTAT+AGG + chr3.4:64578650-64578669 MS.gene05137:intron 20.0%
!! ATTTCTTAAAGGATTCTTAA+AGG - chr3.4:64575704-64575723 None:intergenic 20.0%
!! TAAAACATCCTTATTAGTTA+TGG - chr3.4:64578548-64578567 None:intergenic 20.0%
!! TAAAATAAATAAATATGGGG+GGG - chr3.4:64577314-64577333 None:intergenic 20.0%
!! TAAATACTATACCTGTAATA+AGG - chr3.4:64575357-64575376 None:intergenic 20.0%
!! TCTGTAATTACCTTAAAAAA+AGG - chr3.4:64575876-64575895 None:intergenic 20.0%
!! TTACCTTAAAAAAAGGAAAA+GGG - chr3.4:64575869-64575888 None:intergenic 20.0%
!!! AAAGAAGTTGATATAATTAG+TGG - chr3.4:64576544-64576563 None:intergenic 20.0%
!!! AAAGATTCCTTATAATTTGT+AGG + chr3.4:64578738-64578757 MS.gene05137:intron 20.0%
!!! AAGAAGTTGATATAATTAGT+GGG - chr3.4:64576543-64576562 None:intergenic 20.0%
!!! AAGATTCCTTATAATTTGTA+GGG + chr3.4:64578739-64578758 MS.gene05137:intron 20.0%
!!! AGCAATGAAAACTTTTAAAA+TGG + chr3.4:64578867-64578886 MS.gene05137:CDS 20.0%
!!! CACTTTTTAACATTTCTTAA+AGG - chr3.4:64575715-64575734 None:intergenic 20.0%
!!! GATTTTGTTATTCAACAATA+GGG + chr3.4:64576634-64576653 MS.gene05137:intron 20.0%
!!! GCAATGAAAACTTTTAAAAT+GGG + chr3.4:64578868-64578887 MS.gene05137:CDS 20.0%
!!! TAGATTACCTTATAGTTTTT+AGG + chr3.4:64577355-64577374 MS.gene05137:intron 20.0%
!!! TATTTGAAGTTCATCTTTTA+TGG + chr3.4:64577888-64577907 MS.gene05137:intron 20.0%
!!! TCTTTGTTCTTTAATTTGAT+TGG + chr3.4:64577693-64577712 MS.gene05137:intron 20.0%
!!! TGATTGATTAACTAGTTTTT+AGG - chr3.4:64577647-64577666 None:intergenic 20.0%
! AAAATAAATAAATATGGGGG+GGG - chr3.4:64577313-64577332 None:intergenic 25.0%
! AATGATAGACATATGATATG+AGG - chr3.4:64578258-64578277 None:intergenic 25.0%
! ACGGAATATTACTTAATAAC+TGG - chr3.4:64577851-64577870 None:intergenic 25.0%
! ACTAAACCCTACAAATTATA+AGG - chr3.4:64578748-64578767 None:intergenic 25.0%
! ACTATTGTAAAAGGAAACTA+AGG - chr3.4:64578300-64578319 None:intergenic 25.0%
! AGAATCACAAACAAATTTCT+AGG + chr3.4:64577485-64577504 MS.gene05137:intron 25.0%
! ATTTACGCCTAAAAACTATA+AGG - chr3.4:64577365-64577384 None:intergenic 25.0%
! CCAAGATTTAAATTTAAGCA+TGG + chr3.4:64576612-64576631 MS.gene05137:intron 25.0%
! CCATGCTTAAATTTAAATCT+TGG - chr3.4:64576615-64576634 None:intergenic 25.0%
! CTATTGTAAAAGGAAACTAA+GGG - chr3.4:64578299-64578318 None:intergenic 25.0%
! TAAACGAGACAAAAAAATTC+AGG - chr3.4:64578442-64578461 None:intergenic 25.0%
! TACCATCAACAATATCATTA+TGG - chr3.4:64578909-64578928 None:intergenic 25.0%
! TATGATGTTCAAGATATTAG+AGG - chr3.4:64576325-64576344 None:intergenic 25.0%
! TGAAATTACTTCTATTCAAG+AGG + chr3.4:64578117-64578136 MS.gene05137:CDS 25.0%
! TGCAAATAATTCCTTATTAC+AGG + chr3.4:64575343-64575362 MS.gene05137:CDS 25.0%
! TTATATTTCGTGAGTGAAAT+GGG - chr3.4:64575557-64575576 None:intergenic 25.0%
! TTTATATTTCGTGAGTGAAA+TGG - chr3.4:64575558-64575577 None:intergenic 25.0%
!! AAAAATATGGTTGATTCAGA+TGG + chr3.4:64578382-64578401 MS.gene05137:intron 25.0%
!! AAAATATGGTTGATTCAGAT+GGG + chr3.4:64578383-64578402 MS.gene05137:intron 25.0%
!! AACAAACTATGAGTTTTACA+CGG - chr3.4:64578627-64578646 None:intergenic 25.0%
!! CACTTTCTTTTTGTCTTTTA+AGG + chr3.4:64577593-64577612 MS.gene05137:intron 25.0%
!! CACTTTCTTTTTGTCTTTTA+AGG - chr3.4:64577612-64577593 None:intergenic 25.0%
!! GTGTTGAATGCATAATTTTT+AGG - chr3.4:64575778-64575797 None:intergenic 25.0%
!! TTCAATTGAGATTCTAGTTA+AGG + chr3.4:64577528-64577547 MS.gene05137:intron 25.0%
!! TTTGAACCTCTTTTAATAGA+CGG + chr3.4:64578982-64579001 MS.gene05137:CDS 25.0%
!! TTTGTTTGTGATTCTAGTTA+TGG - chr3.4:64577480-64577499 None:intergenic 25.0%
!!! GAAAACTTTTAAAATGGGTT+GGG + chr3.4:64578873-64578892 MS.gene05137:CDS 25.0%
!!! GGATTTTGTTATTCAACAAT+AGG + chr3.4:64576633-64576652 MS.gene05137:intron 25.0%
!!! TGAAAACTTTTAAAATGGGT+TGG + chr3.4:64578872-64578891 MS.gene05137:CDS 25.0%
!!! TGTTTTAAAGTAGCTGATTT+AGG + chr3.4:64576267-64576286 MS.gene05137:CDS 25.0%
AAATAAATAAATATGGGGGG+GGG - chr3.4:64577312-64577331 None:intergenic 30.0%
AAATATGCTTTATACACCGA+TGG - chr3.4:64577992-64578011 None:intergenic 30.0%
AACAAAGATAAAGAGAGTAG+AGG - chr3.4:64577681-64577700 None:intergenic 30.0%
AATAGTATCAGATGGTATGA+TGG + chr3.4:64578063-64578082 MS.gene05137:CDS 30.0%
AATGTGATTAACTAGTTGCA+TGG - chr3.4:64578361-64578380 None:intergenic 30.0%
ACAACCATTAAAAGTTGTGT+TGG - chr3.4:64576250-64576269 None:intergenic 30.0%
ACATGTGGAACAAATAAAGA+TGG - chr3.4:64577792-64577811 None:intergenic 30.0%
AGAACAATCATTAACCAAGA+AGG + chr3.4:64576705-64576724 MS.gene05137:intron 30.0%
AGGCTCATATCATATTATCA+AGG + chr3.4:64576725-64576744 MS.gene05137:intron 30.0%
ATCGTTCATTTGAGAACAAA+CGG + chr3.4:64576822-64576841 MS.gene05137:intron 30.0%
ATGATGGTACTAACATTCAT+TGG + chr3.4:64578079-64578098 MS.gene05137:CDS 30.0%
ATGGCAATAAACAACAAAAC+AGG - chr3.4:64577773-64577792 None:intergenic 30.0%
ATTGTATTGCTCTTGACAAA+GGG + chr3.4:64579096-64579115 MS.gene05137:CDS 30.0%
CAAAGCTTATATTTACCTCT+TGG - chr3.4:64578171-64578190 None:intergenic 30.0%
CATCAACAATATCATTATGG+AGG - chr3.4:64578906-64578925 None:intergenic 30.0%
CTCCATAATGATATTGTTGA+TGG + chr3.4:64578904-64578923 MS.gene05137:CDS 30.0%
GAATAGACATGATAAGAAGA+AGG - chr3.4:64575959-64575978 None:intergenic 30.0%
GGTTAATGATTGTTCTTAGT+TGG - chr3.4:64576701-64576720 None:intergenic 30.0%
GTATACTCTTGTAGAAATCA+GGG - chr3.4:64576446-64576465 None:intergenic 30.0%
TAAATATTTCCCTTGTTGAG+TGG - chr3.4:64577950-64577969 None:intergenic 30.0%
TAATATGATATGAGCCTTCT+TGG - chr3.4:64576722-64576741 None:intergenic 30.0%
TATTGTATTGCTCTTGACAA+AGG + chr3.4:64579095-64579114 MS.gene05137:CDS 30.0%
TCCACTAACCATAACTAATA+AGG + chr3.4:64578537-64578556 MS.gene05137:intron 30.0%
TCCTTATTAGTTATGGTTAG+TGG - chr3.4:64578541-64578560 None:intergenic 30.0%
TGTATACTCTTGTAGAAATC+AGG - chr3.4:64576447-64576466 None:intergenic 30.0%
TTCGAAGAAATAGTATCAGA+TGG + chr3.4:64578055-64578074 MS.gene05137:CDS 30.0%
! AAGAGTATACAACAAGAGAA+AGG + chr3.4:64576456-64576475 MS.gene05137:CDS 30.0%
! AGTTCATCTTTTATGGCATT+AGG + chr3.4:64577895-64577914 MS.gene05137:intron 30.0%
! ATGTCCAACACAACTTTTAA+TGG + chr3.4:64576243-64576262 MS.gene05137:CDS 30.0%
! GAGAAAAGTGATAATGAAAG+TGG + chr3.4:64576188-64576207 MS.gene05137:intron 30.0%
! TTGAACCTCTTTTAATAGAC+GGG + chr3.4:64578983-64579002 MS.gene05137:CDS 30.0%
! TTTAAGGTAATTACAGAGCT+GGG + chr3.4:64575879-64575898 MS.gene05137:intron 30.0%
!! AGTAATGTTTTAGACCAAGT+TGG + chr3.4:64576674-64576693 MS.gene05137:intron 30.0%
!! ATTGTTGATAGCAAAATGAG+AGG + chr3.4:64578928-64578947 MS.gene05137:CDS 30.0%
!! CTTAGTCGTACAATTTTGAT+CGG + chr3.4:64576881-64576900 MS.gene05137:intron 30.0%
!! TTGTTGATAGCAAAATGAGA+GGG + chr3.4:64578929-64578948 MS.gene05137:CDS 30.0%
!!! TTTTAAGGTAATTACAGAGC+TGG + chr3.4:64575878-64575897 MS.gene05137:intron 30.0%
AAAATCGAGAAGACAACATG+TGG - chr3.4:64577807-64577826 None:intergenic 35.0%
AAAGTTGTGTTGGACATCAA+CGG - chr3.4:64576240-64576259 None:intergenic 35.0%
AAATCAGAATAGAGAAGGTG+TGG - chr3.4:64576767-64576786 None:intergenic 35.0%
AACATTACTTGACCATCCTA+AGG - chr3.4:64576663-64576682 None:intergenic 35.0%
AATAAATAAATATGGGGGGG+GGG - chr3.4:64577311-64577330 None:intergenic 35.0%
AATGAAAGTGGCAGCTATAA+TGG + chr3.4:64576200-64576219 MS.gene05137:CDS 35.0%
AATGCAAAACCACTCAACAA+GGG + chr3.4:64577938-64577957 MS.gene05137:CDS 35.0%
AATGTCACACAAGTATTTCC+CGG - chr3.4:64577140-64577159 None:intergenic 35.0%
ACACCAAATCAGAATAGAGA+AGG - chr3.4:64576772-64576791 None:intergenic 35.0%
ACACCTTCTCTATTCTGATT+TGG + chr3.4:64576766-64576785 MS.gene05137:intron 35.0%
ACATTACTTGACCATCCTAA+GGG - chr3.4:64576662-64576681 None:intergenic 35.0%
ACCACTCACGAAATTTAACA+AGG + chr3.4:64575502-64575521 MS.gene05137:intron 35.0%
AGAAGACATCTATTGTGAGA+CGG - chr3.4:64578417-64578436 None:intergenic 35.0%
AGTCGTCCATAAAAATTTCC+GGG - chr3.4:64576516-64576535 None:intergenic 35.0%
ATAACAACATCACATACCAC+TGG - chr3.4:64576142-64576161 None:intergenic 35.0%
ATTCCTCCTATTGTCTACAT+TGG + chr3.4:64576565-64576584 MS.gene05137:CDS 35.0%
CAAGAGAAAGGAGAAAATGT+TGG + chr3.4:64576468-64576487 MS.gene05137:CDS 35.0%
CCACTCACGAAATTTAACAA+GGG + chr3.4:64575503-64575522 MS.gene05137:intron 35.0%
CTTGTGTGACATTAATGTCA+CGG + chr3.4:64577147-64577166 MS.gene05137:intron 35.0%
GAGTCGTCCATAAAAATTTC+CGG - chr3.4:64576517-64576536 None:intergenic 35.0%
GCATTATTGGCCAAATCTTT+GGG - chr3.4:64577923-64577942 None:intergenic 35.0%
TAATGCAAAACCACTCAACA+AGG + chr3.4:64577937-64577956 MS.gene05137:CDS 35.0%
TCATGGATGAATTGTTCTCA+AGG + chr3.4:64579019-64579038 MS.gene05137:CDS 35.0%
TGATAGCCAATGTAGACAAT+AGG - chr3.4:64576574-64576593 None:intergenic 35.0%
TGCATTATTGGCCAAATCTT+TGG - chr3.4:64577924-64577943 None:intergenic 35.0%
TTATGATCCTACTTGATCGA+TGG - chr3.4:64576951-64576970 None:intergenic 35.0%
TTCTAGGTGAAATTGCAATG+AGG + chr3.4:64577501-64577520 MS.gene05137:intron 35.0%
TTGTTAAATTTCGTGAGTGG+TGG - chr3.4:64575503-64575522 None:intergenic 35.0%
TTTGTAGGGTTTAGTTGAAG+AGG + chr3.4:64578753-64578772 MS.gene05137:intron 35.0%
! TACACTTTGCTTGCTAGATT+TGG + chr3.4:64577724-64577743 MS.gene05137:intron 35.0%
! TTTGAAATACAGGTGTCTCA+TGG - chr3.4:64576371-64576390 None:intergenic 35.0%
!! ACTTCTATTCAAGAGGTACT+TGG + chr3.4:64578124-64578143 MS.gene05137:CDS 35.0%
!! CGACCCTTTTCCTTTTTTTA+AGG + chr3.4:64575863-64575882 MS.gene05137:intron 35.0%
!! GTTGAGTGGTTTTGCATTAT+TGG - chr3.4:64577936-64577955 None:intergenic 35.0%
!! TGTTGATAGCAAAATGAGAG+GGG + chr3.4:64578930-64578949 MS.gene05137:CDS 35.0%
AAAAACAGCTCTGTGGTACT+TGG - chr3.4:64578965-64578984 None:intergenic 40.0%
AACATACCATCCTACTGTAG+AGG + chr3.4:64578801-64578820 MS.gene05137:CDS 40.0%
ACTTGATCGATGGTGATAGA+AGG - chr3.4:64576941-64576960 None:intergenic 40.0%
AGAAAGCAGATTTCCTGAAC+AGG - chr3.4:64576918-64576937 None:intergenic 40.0%
ATAAATAAATATGGGGGGGG+GGG - chr3.4:64577310-64577329 None:intergenic 40.0%
ATCAAGAACAAGTCCTCCAT+CGG + chr3.4:64577973-64577992 MS.gene05137:CDS 40.0%
ATCTAATGTCACCCAATGTG+TGG - chr3.4:64577189-64577208 None:intergenic 40.0%
ATGTCACACAAGTATTTCCC+GGG - chr3.4:64577139-64577158 None:intergenic 40.0%
ATTAAATCTGGGCCACACAT+TGG + chr3.4:64577174-64577193 MS.gene05137:intron 40.0%
ATTGTCATTGCCATTGCATC+TGG - chr3.4:64577224-64577243 None:intergenic 40.0%
CCAAACCCGTCTATTAAAAG+AGG - chr3.4:64578991-64579010 None:intergenic 40.0%
CCCTTGTTAAATTTCGTGAG+TGG - chr3.4:64575506-64575525 None:intergenic 40.0%
CTCTGCATAAAGTTTCGATG+AGG - chr3.4:64576171-64576190 None:intergenic 40.0%
GGAAGTAAGACAAGTGATTG+AGG + chr3.4:64578822-64578841 MS.gene05137:CDS 40.0%
GTCACGGTGACATTAAATCT+GGG + chr3.4:64577163-64577182 MS.gene05137:intron 40.0%
GTGACATTAGATGTGTTGTG+TGG + chr3.4:64577197-64577216 MS.gene05137:intron 40.0%
TAGCCAATGTAGACAATAGG+AGG - chr3.4:64576571-64576590 None:intergenic 40.0%
TATGCTTTATACACCGATGG+AGG - chr3.4:64577989-64578008 None:intergenic 40.0%
TCTACAGTAGGATGGTATGT+TGG - chr3.4:64578802-64578821 None:intergenic 40.0%
TCTATCACCATCGATCAAGT+AGG + chr3.4:64576941-64576960 MS.gene05137:intron 40.0%
TGCTTCATAAATGCAACACC+CGG + chr3.4:64576495-64576514 MS.gene05137:CDS 40.0%
TGTCACGGTGACATTAAATC+TGG + chr3.4:64577162-64577181 MS.gene05137:intron 40.0%
TGTCTTACTTCCTCTACAGT+AGG - chr3.4:64578814-64578833 None:intergenic 40.0%
TGTTCTTAGTTGGACCAACT+TGG - chr3.4:64576691-64576710 None:intergenic 40.0%
TTAAATCTGGGCCACACATT+GGG + chr3.4:64577175-64577194 MS.gene05137:intron 40.0%
TTACTTCCTCTACAGTAGGA+TGG - chr3.4:64578810-64578829 None:intergenic 40.0%
TTGTCATTGCCATTGCATCT+GGG - chr3.4:64577223-64577242 None:intergenic 40.0%
! ACGTATTTTACACCATCCAG+TGG + chr3.4:64576123-64576142 MS.gene05137:intron 40.0%
! GCAACACCCGGAAATTTTTA+TGG + chr3.4:64576507-64576526 MS.gene05137:CDS 40.0%
! GTGTTGAGAGTTGACTTCAA+CGG - chr3.4:64577073-64577092 None:intergenic 40.0%
! TGTTGAGAGTTGACTTCAAC+GGG - chr3.4:64577072-64577091 None:intergenic 40.0%
! TTCAACAATAGGGTACCCTT+AGG + chr3.4:64576644-64576663 MS.gene05137:intron 40.0%
!! AGCTGATTTAGGTTGCTCTT+CGG + chr3.4:64576278-64576297 MS.gene05137:CDS 40.0%
!! CCTCTTTTAATAGACGGGTT+TGG + chr3.4:64578988-64579007 MS.gene05137:CDS 40.0%
!! CGGGTTTGGTGAAAATATCA+TGG + chr3.4:64579002-64579021 MS.gene05137:CDS 40.0%
!! TATTCAAGAGGTACTTGGCA+TGG + chr3.4:64578129-64578148 MS.gene05137:CDS 40.0%
AGACAAGTGATTGAGGCAGA+AGG + chr3.4:64578829-64578848 MS.gene05137:CDS 45.0%
CAACACTCAACACCATGGAT+GGG + chr3.4:64577042-64577061 MS.gene05137:intron 45.0%
CAACATCACATACCACTGGA+TGG - chr3.4:64576138-64576157 None:intergenic 45.0%
CAACTCTCAACACCATGGAT+GGG + chr3.4:64577080-64577099 MS.gene05137:intron 45.0%
CTTCACATGAAAGGTGGTGT+GGG + chr3.4:64575308-64575327 MS.gene05137:CDS 45.0%
GAACGAGTCCTTCACATGAA+AGG + chr3.4:64575299-64575318 MS.gene05137:CDS 45.0%
GAAGTCAACTCTCAACACCA+TGG + chr3.4:64577075-64577094 MS.gene05137:intron 45.0%
GAGATCAACACTCAACACCA+TGG + chr3.4:64577037-64577056 MS.gene05137:intron 45.0%
GAGGTTCAAAAACAGCTCTG+TGG - chr3.4:64578972-64578991 None:intergenic 45.0%
GCAATGGCAATGACAATGTG+TGG + chr3.4:64577227-64577246 MS.gene05137:intron 45.0%
GCATTAGGCACCCAAAGATT+TGG + chr3.4:64577910-64577929 MS.gene05137:intron 45.0%
TAAATAAATATGGGGGGGGG+GGG - chr3.4:64577309-64577328 None:intergenic 45.0%
TCAACACTCAACACCATGGA+TGG + chr3.4:64577041-64577060 MS.gene05137:intron 45.0%
TCAACTCTCAACACCATGGA+TGG + chr3.4:64577079-64577098 MS.gene05137:intron 45.0%
TGTCACACAAGTATTTCCCG+GGG - chr3.4:64577138-64577157 None:intergenic 45.0%
! ACAATAGGGTACCCTTAGGA+TGG + chr3.4:64576648-64576667 MS.gene05137:intron 45.0%
! GAGGTGACCAAAAGTGTGTT+TGG - chr3.4:64576306-64576325 None:intergenic 45.0%
! GTTGAGAGTTGACTTCAACG+GGG - chr3.4:64577071-64577090 None:intergenic 45.0%
!! CTGATTTAGGTTGCTCTTCG+GGG + chr3.4:64576280-64576299 MS.gene05137:CDS 45.0%
!! GCTGATTTAGGTTGCTCTTC+GGG + chr3.4:64576279-64576298 MS.gene05137:CDS 45.0%
!! AAAGTTAAAATAAATAAATA+TGG - chr3.4:64577319-64577338 None:intergenic 5.0%
!! AAGTTAAAATAAATAAATAT+GGG - chr3.4:64577318-64577337 None:intergenic 5.0%
!! TATCAATATAAATTTATAAA+AGG - chr3.4:64578328-64578347 None:intergenic 5.0%
!!! AATGTTTAATTTTTATTTTT+AGG - chr3.4:64578214-64578233 None:intergenic 5.0%
AAATAAATATGGGGGGGGGG+GGG - chr3.4:64577308-64577327 None:intergenic 50.0%
AATGTGTGGCCCAGATGCAA+TGG + chr3.4:64577241-64577260 MS.gene05137:intron 50.0%
ACTCAACGAGATGGTCCAAG+AGG + chr3.4:64578153-64578172 MS.gene05137:CDS 50.0%
CCACACCACCTTTCATGTGA+AGG - chr3.4:64575310-64575329 None:intergenic 50.0%
CCTTCACATGAAAGGTGGTG+TGG + chr3.4:64575307-64575326 MS.gene05137:CDS 50.0%
CGAGTCCTTCACATGAAAGG+TGG + chr3.4:64575302-64575321 MS.gene05137:CDS 50.0%
GTCACACAAGTATTTCCCGG+GGG - chr3.4:64577137-64577156 None:intergenic 50.0%
TCACACAAGTATTTCCCGGG+GGG - chr3.4:64577136-64577155 None:intergenic 50.0%
TGGCATGGTACTCAACGAGA+TGG + chr3.4:64578144-64578163 MS.gene05137:CDS 50.0%
! GAGAAGGTGTGGATCTAGTG+TGG - chr3.4:64576756-64576775 None:intergenic 50.0%
! TTCGGGGCCAAACACACTTT+TGG + chr3.4:64576296-64576315 MS.gene05137:CDS 50.0%
AATAAATATGGGGGGGGGGG+GGG - chr3.4:64577307-64577326 None:intergenic 55.0%
ACACAAGTATTTCCCGGGGG+GGG - chr3.4:64577134-64577153 None:intergenic 55.0%
CACACAAGTATTTCCCGGGG+GGG - chr3.4:64577135-64577154 None:intergenic 55.0%
GGACGACTCACATCCTGTTC+AGG + chr3.4:64576902-64576921 MS.gene05137:intron 55.0%
GTTGTGTGGCCCAGATGCAA+TGG + chr3.4:64577211-64577230 MS.gene05137:intron 55.0%
TCAACGGGGTAACCCATCCA+TGG - chr3.4:64577057-64577076 None:intergenic 55.0%
! GTCACCGTGCCATTGCATCT+GGG - chr3.4:64577253-64577272 None:intergenic 55.0%
! TGTCACCGTGCCATTGCATC+TGG - chr3.4:64577254-64577273 None:intergenic 55.0%
ACAAGTATTTCCCGGGGGGG+GGG - chr3.4:64577132-64577151 None:intergenic 60.0%
ATAAATATGGGGGGGGGGGG+GGG - chr3.4:64577306-64577325 None:intergenic 60.0%
CACAAGTATTTCCCGGGGGG+GGG - chr3.4:64577133-64577152 None:intergenic 60.0%
GTGGCCCAGATGCAATGGCA+CGG + chr3.4:64577216-64577235 MS.gene05137:intron 60.0%
AAGTATTTCCCGGGGGGGGG+GGG - chr3.4:64577130-64577149 None:intergenic 65.0%
CAAGTATTTCCCGGGGGGGG+GGG - chr3.4:64577131-64577150 None:intergenic 65.0%
TAAATATGGGGGGGGGGGGG+GGG - chr3.4:64577305-64577324 None:intergenic 65.0%
AAATATGGGGGGGGGGGGGG+GGG - chr3.4:64577304-64577323 None:intergenic 70.0%
AGTATTTCCCGGGGGGGGGG+GGG - chr3.4:64577129-64577148 None:intergenic 70.0%
AATATGGGGGGGGGGGGGGG+GGG - chr3.4:64577303-64577322 None:intergenic 75.0%
GTATTTCCCGGGGGGGGGGG+GGG - chr3.4:64577128-64577147 None:intergenic 75.0%
TATTTCCCGGGGGGGGGGGG+GGG - chr3.4:64577127-64577146 None:intergenic 75.0%
! ATATGGGGGGGGGGGGGGGG+GGG - chr3.4:64577302-64577321 None:intergenic 80.0%
! ATTTCCCGGGGGGGGGGGGG+GGG - chr3.4:64577126-64577145 None:intergenic 80.0%
! GGGGGGGGGGGACCCATCCA+TGG - chr3.4:64577095-64577114 None:intergenic 80.0%
! GGGGGGGGGGGGTGGCACTT+TGG - chr3.4:64577286-64577305 None:intergenic 80.0%
! TATGGGGGGGGGGGGGGGGG+GGG - chr3.4:64577301-64577320 None:intergenic 85.0%
! TTTCCCGGGGGGGGGGGGGG+GGG - chr3.4:64577125-64577144 None:intergenic 85.0%
! ATGGGGGGGGGGGGGGGGGG+GGG - chr3.4:64577300-64577319 None:intergenic 90.0%
! TTCCCGGGGGGGGGGGGGGG+GGG - chr3.4:64577124-64577143 None:intergenic 90.0%
! TCCCGGGGGGGGGGGGGGGG+GGG - chr3.4:64577123-64577142 None:intergenic 95.0%
! TGGGGGGGGGGGGGGGGGGG+GGG - chr3.4:64577299-64577318 None:intergenic 95.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 64575273 64579125 64575273 ID=MS.gene05137
chr3.4 mRNA 64575273 64579125 64575273 ID=MS.gene05137.t1;Parent=MS.gene05137
chr3.4 exon 64575273 64575364 64575273 ID=MS.gene05137.t1.exon1;Parent=MS.gene05137.t1
chr3.4 CDS 64575273 64575364 64575273 ID=cds.MS.gene05137.t1;Parent=MS.gene05137.t1
chr3.4 exon 64576189 64576596 64576189 ID=MS.gene05137.t1.exon2;Parent=MS.gene05137.t1
chr3.4 CDS 64576189 64576596 64576189 ID=cds.MS.gene05137.t1;Parent=MS.gene05137.t1
chr3.4 exon 64577917 64578174 64577917 ID=MS.gene05137.t1.exon3;Parent=MS.gene05137.t1
chr3.4 CDS 64577917 64578174 64577917 ID=cds.MS.gene05137.t1;Parent=MS.gene05137.t1
chr3.4 exon 64578760 64579125 64578760 ID=MS.gene05137.t1.exon4;Parent=MS.gene05137.t1
chr3.4 CDS 64578760 64579125 64578760 ID=cds.MS.gene05137.t1;Parent=MS.gene05137.t1
Gene Sequence

>MS.gene05137

CATCGATATCTTTTCTTATGACGATAGAACGAGTCCTTCACATGAAAGGTGGTGTGGGAGAAAAAAGTTATGCAAATAATTCCTTATTACAGGTATAGTATTTAAATAAAAAACGTATTTGTTTGATGCTCCTTCCATATCTAATTATAGATTCATTTGAAATTTTATTTGTTCCTAAATATAAAATAATTTATAAATTATTAGAGAGCTATGCTATAATGTACGAACCACCACTCACGAAATTTAACAAGGGTGATATTATTAGAGAGCTAAGCTATTTTCCCATTTCACTCACGAAATATAAAATAATTTATAAATTATTAGAGAGCTATGCTATAAATTATTTTTCTTAACTCTTACTAGTTTTTTTTTTTAAGAAACTTAACTCTTACTAGTTGTTTTTGACTATTGCTGACATGAAGTATTATCCTTTAAGAATCCTTTAAGAAATGTTAAAAAGTGTCCTTATGATATGTTAAGAAGTTTAAAGAAGAAATTTTGTCCTAAAAATTATGCATTCAACACGTTAAAACTTTAAAAATTAACATTTTCTACATAAAACTTACTAATTATTTCTAGTTTTGTTAGCACGACCCTTTTCCTTTTTTTAAGGTAATTACAGAGCTGGGTTGTGTTTCACGAGTTTTTAATAAAATTACTTAATATCTTGTTAAAAAAACTGTCCTTCTTCTTATCATGTCTATTCAATGTTGAGATTAATTTTTATACATATACGATGTAAAATGATGTATTCAATCAAATTATGTTATATGTCACTTTTATAGTTTTAGAACCTAATATCTTCATAAATATCTATATAACGTGATTTGATATAAAATATCACGTGTGAACGTATTTTACACCATCCAGTGGTATGTGATGTTGTTATATTAATCCTCATCGAAACTTTATGCAGAGAAAAGTGATAATGAAAGTGGCAGCTATAATGGAAGAGAATTTAAAACCGTTGATGTCCAACACAACTTTTAATGGTTGTTTTAAAGTAGCTGATTTAGGTTGCTCTTCGGGGCCAAACACACTTTTGGTCACCTCTAATATCTTGAACATCATACGTGAAATTAGCTTGAAGTTAAACCATGAGACACCTGTATTTCAAATTTATATCAATGATTTATTTGAAAATGATTTTAGTACAATCTTCAAGTTACTCCCTGATTTCTACAAGAGTATACAACAAGAGAAAGGAGAAAATGTTGGAGCATGCTTCATAAATGCAACACCCGGAAATTTTTATGGACGACTCTTTCCCACTAATTATATCAACTTCTTTCATTCCTCCTATTGTCTACATTGGCTATCACAAGTAAGTACTACAAAACCAAGATTTAAATTTAAGCATGGATTTTGTTATTCAACAATAGGGTACCCTTAGGATGGTCAAGTAATGTTTTAGACCAAGTTGGTCCAACTAAGAACAATCATTAACCAAGAAGGCTCATATCATATTATCAAGGTCTAGCCACACTAGATCCACACCTTCTCTATTCTGATTTGGTGTTGTAGAAAATGAACGTAGTTTTCGATCTCGATCGTTCATTTGAGAACAAACGGATAAAATTGAAAACTGTGTCTTTTTAATAAAATGATCTTAGTCGTACAATTTTGATCGGACGACTCACATCCTGTTCAGGAAATCTGCTTTCTCCTTCTATCACCATCGATCAAGTAGGATCATAACAACAAAGCATAACTAACCCTTTTTATTAATTTTTTTTTAAAGAAGAACTAACTCATATACAAGATGAGATCAACACTCAACACCATGGATGGGTTACCCCGTTGAAGTCAACTCTCAACACCATGGATGGGTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGGGAAATACTTGTGTGACATTAATGTCACGGTGACATTAAATCTGGGCCACACATTGGGTGACATTAGATGTGTTGTGTGGCCCAGATGCAATGGCAATGACAATGTGTGGCCCAGATGCAATGGCACGGTGACATTAATGTCACCAAAGTGCCACCCCCCCCCCCCCCCCCCCCCCCCATATTTATTTATTTTAACTTTATATGATGTTGTATAATAGATTACCTTATAGTTTTTAGGCGTAAATGCATTAATATTTTACTAAAATCCTTAAAAGACAAAAAGAAAGTGAAGTTTTAATTTGTGTGCAACTTACAAAAAAAAAAAAAAAATCATAATCCATAACTAGAATCACAAACAAATTTCTAGGTGAAATTGCAATGAGGAATCTTCAATTGAGATTCTAGTTAAGGATTATGATTTTTTTTTTGTGCGTTGCATACAAATTAAAACTTCACTTTCTTTTTGTCTTTTAAGGATTTTAGAAAAAGATTAATGCATTTAAACCTAAAAACTAGTTAATCAATCATGGTGTTTGTTCCTCTACTCTCTTTATCTTTGTTCTTTAATTTGATTGGATTTGTTATACACTTTGCTTGCTAGATTTGGTCTTGTTGAATATTGTTGCTTTGCCTGTTTTGTTGTTTATTGCCATCTTTATTTGTTCCACATGTTGTCTTCTCGATTTTGCACAAGAGTTCGAATTCACACCAGTTATTAAGTAATATTCCGTATAATATAAATTATTTATATTTGAAGTTCATCTTTTATGGCATTAGGCACCCAAAGATTTGGCCAATAATGCAAAACCACTCAACAAGGGAAATATTTACATATCAAGAACAAGTCCTCCATCGGTGTATAAAGCATATTTTGTGCAATTTGCAAGAGATTTCAAGTGTTTTCTAAAGTCTCGCTTCGAAGAAATAGTATCAGATGGTATGATGGTACTAACATTCATTGGCAGAGAAACATCAAATGAAATTACTTCTATTCAAGAGGTACTTGGCATGGTACTCAACGAGATGGTCCAAGAGGTAAATATAAGCTTTGATAGCAAGTAAGAAAGAGTGCCTAAAAATAAAAATTAAACATTTCAAAACAAAAATCTTATCGGCCTCATATCATATGTCTATCATTTCACACACACTTTAGATACCCTTAGTTTCCTTTTACAATAGTTTAAACCTTTTATAAATTTATATTGATATGATAAAATACCATGCAACTAGTTAATCACATTTAAAAATATGGTTGATTCAGATGGGTACTTCTTCCGTCTCACAATAGATGTCTTCTTTCCTGAATTTTTTTGTCTCGTTTATAATATAGATACAACATTTAATACTTTTTGAACTTACATACCCTTATTTATTGCATTTTAATCATCTAAAACTATTCCACTAACCATAACTAATAAGGATGTTTTAGAAAATGATACACATTTTGCCATTAAAATCAACACTATTAATCATTTCTTTAATTACCGTGTAAAACTCATAGTTTGTTATAATTGAACGACATTATATTATAGGAGACTTAATTTACATAACAAAATAAATATTTAGTTTTTCTTTAACTTTTGATTTTCCTTTTTTATAAAGATTCCTTATAATTTGTAGGGTTTAGTTGAAGAGGAGAAATTAGACTTGTTTAATTTTCCAACATACCATCCTACTGTAGAGGAAGTAAGACAAGTGATTGAGGCAGAAGGATCTTTTACACTTCAAGCAATGAAAACTTTTAAAATGGGTTGGGATGCAAACCTCCATAATGATATTGTTGATGGTATTGTTGATAGCAAAATGAGAGGGGAGCTTATAGCCAAGTACCACAGAGCTGTTTTTGAACCTCTTTTAATAGACGGGTTTGGTGAAAATATCATGGATGAATTGTTCTCAAGGTTTGCTAAGCTGCTTGCACAACTCATTGAGTTAGAGACATTAGAGTTTACTAATATTGTATTGCTCTTGACAAAGGGTCTTTGA

Protein sequence

>MS.gene05137.t1

HRYLFLURUNESFTUKVVWEKKVMQIIPYYREKUUUKWQLUWKRIUNRUCPTQLLMVVLKULIUVALRGQTHFWSPLISUTSYVKLAUSUTMRHLYFKFISMIYLKMILVQSSSYSLISTRVYNKRKEKMLEHASUMQHPEIFMDDSFPLIISTSFIPPIVYIGYHKHPKIWPIMQNHSTREIFTYQEQVLHRCIKHILCNLQEISSVFUSLASKKUYQMVUWYUHSLAEKHQMKLLLFKRYLAWYSTRWSKRVULKRRNUTCLIFQHTILLURKUDKULRQKDLLHFKQUKLLKWVGMQTSIMILLMVLLIAKUEGSLUPSTTELFLNLFUUTGLVKISWMNCSQGLLSCLHNSLSURHUSLLILYCSUQRVF