AlfalfaGEDB | MS.gene31510

M. sativa cultivar XinJiangDaYe / MS.gene31510

KEGG: K03644
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005739 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006732 GO:0006790 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009106 GO:0009107 GO:0009108 GO:0009987 GO:0016053 GO:0016740 GO:0016782 GO:0016783 GO:0016992 GO:0018130 GO:0019752 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044272 GO:0044281 GO:0044283 GO:0046394 GO:0046483 GO:0048037 GO:0051186 GO:0051188 GO:0051536 GO:0051539 GO:0051540 GO:0071704 GO:0072330 GO:0110165 GO:1901360 GO:1901362 GO:1901576
PFAM: PF04055.24 PF16881.8

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31510.t1	XP_013465052.1	96.8	379	11	1	1	379	1	378	5.30E-200	706.8

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31510.t1	B7FM45	96.3	379	13	1	1	379	1	378	8.3e-202	704.1

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31510.t1	A0A072VBA9	96.8	379	11	1	1	379	1	378	3.8e-200	706.8

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050876	MS.gene31510	0.800937	1.14E-48	-1.69E-46
MS.gene052004	MS.gene31510	0.814025	1.90E-51	-1.69E-46
MS.gene055849	MS.gene31510	0.90749	4.79E-81	-1.69E-46
MS.gene057148	MS.gene31510	0.829249	5.72E-55	-1.69E-46
MS.gene057684	MS.gene31510	0.851021	1.16E-60	-1.69E-46
MS.gene057765	MS.gene31510	0.809984	1.44E-50	-1.69E-46

Showing 1 to 6 of 6 entries

Previous1Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31510.t1	MTR_2g090140	97.625	379	8	1	1	379	1	378	0.0	769
MS.gene31510.t1	MTR_1g050432	50.943	371	170	5	6	369	12	377	8.05e-132	383

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31510.t1	AT2G20860	80.533	375	67	2	2	376	1	369	0.0	589
MS.gene31510.t1	AT2G20860	80.533	375	67	2	2	376	1	369	0.0	589
MS.gene31510.t1	AT2G20860	80.533	375	67	2	2	376	1	369	0.0	589
MS.gene31510.t1	AT5G08415	58.725	298	121	2	73	369	89	385	4.80e-124	363

Showing 1 to 4 of 4 entries

Previous1Next

Find 125 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGAAGTCTGATAGGGAC+GGG	0.497026	2.4:+10930456	None:intergenic
AAATGACCGCTCCCTTGATC+AGG	0.466961	2.4:+10928279	None:intergenic
AAATGCTGAGTGTGTAGAGA+AGG	0.538656	2.4:-10927636	MS.gene31510:CDS
AAATTCGGAGGATGAGGCGG+TGG	0.583629	2.4:+10930523	None:intergenic
AACGCGTACTCTGTTGAAGT+CGG	0.586476	2.4:-10930419	MS.gene31510:CDS
AACTCCGAGCTCGTCTTGCA+AGG	0.520430	2.4:-10930484	MS.gene31510:CDS
AAGAGCTACAGAGTGCTGTG+CGG	0.714846	2.4:-10927565	MS.gene31510:CDS
AAGATTGCTTAAAATTAGCA+CGG	0.591721	2.4:+10927537	None:intergenic
AAGGACATCTAATCCTGATT+TGG	0.417297	2.4:+10927610	None:intergenic
AAGGCTTCTATCAGTATGCT+AGG	0.546070	2.4:+10928222	None:intergenic

Showing 1 to 10 of 125 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AATAGTCTGATACTTCTCAA+AGG	+	chr2.4:10929870-10929889	None:intergenic	30.0%
AATATTTGGTCCACAATACA+AGG	-	chr2.4:10930086-10930105	MS.gene31510:intron	30.0%
AATCATAATAGTAGCAGTAG+CGG	+	chr2.4:10926951-10926970	None:intergenic	30.0%
ACCAAGACTTCAATAATGTT+AGG	-	chr2.4:10929707-10929726	MS.gene31510:intron	30.0%
ACCTAACATTATTGAAGTCT+TGG	+	chr2.4:10929711-10929730	None:intergenic	30.0%
ACTGCTACTATTATGATTCT+TGG	-	chr2.4:10926953-10926972	MS.gene31510:intron	30.0%
AGTGCTAATTACATTCATCT+AGG	-	chr2.4:10928004-10928023	MS.gene31510:intron	30.0%
ATAAACTATATACTCTCACG+GGG	+	chr2.4:10928534-10928553	None:intergenic	30.0%
ATAAGCAAGCTGTATTACTT+TGG	-	chr2.4:10927274-10927293	MS.gene31510:intron	30.0%
ATCAGAATATATTACACCTG+AGG	-	chr2.4:10929844-10929863	MS.gene31510:intron	30.0%

Showing 1 to 10 of 298 entries

Previous1 2 3 4 5…30Next

Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	10926563	10930633	10926563	ID=MS.gene31510
chr2.4	mRNA	10926563	10930633	10926563	ID=MS.gene31510.t1;Parent=MS.gene31510
chr2.4	exon	10930197	10930633	10930197	ID=MS.gene31510.t1.exon1;Parent=MS.gene31510.t1
chr2.4	CDS	10930197	10930633	10930197	ID=cds.MS.gene31510.t1;Parent=MS.gene31510.t1
chr2.4	exon	10928220	10928431	10928220	ID=MS.gene31510.t1.exon2;Parent=MS.gene31510.t1
chr2.4	CDS	10928220	10928431	10928220	ID=cds.MS.gene31510.t1;Parent=MS.gene31510.t1
chr2.4	exon	10927295	10927674	10927295	ID=MS.gene31510.t1.exon3;Parent=MS.gene31510.t1
chr2.4	CDS	10927295	10927674	10927295	ID=cds.MS.gene31510.t1;Parent=MS.gene31510.t1
chr2.4	exon	10926563	10926673	10926563	ID=MS.gene31510.t1.exon4;Parent=MS.gene31510.t1
chr2.4	CDS	10926563	10926673	10926563	ID=cds.MS.gene31510.t1;Parent=MS.gene31510.t1

Gene Sequence

>MS.gene31510

ATGATGTACTCACGGTTCAGAACGGTCGCTAAAAACCTCAAATCCACCACAAAACCTTTCTCTTTCACCACCGCAACCACAACAACAACCACCGCCTCATCCTCCGAATTTCCACAGAATCTCACCGAACTCCGAGCTCGTCTTGCAAGGGAATCCCCGTCCCTATCAGACTTCATTTCCTTGAAATCGAACAACGCGTACTCTGTTGAAGTCGGGACGAAGAAGAATCCGCTTCCAAAACCGAAATGGATGAAGGAATCGATTCCTGGTGGTTGGAAGTATGTGCAGATTAAGAAGAAGCTGAGAGAATTGAAACTTCATACGGTTTGTGAAGAGGCGAAGTGCCCTAATATGGGAGAGTGTTGGTCTGGTGGTGAAACGGGTACCGCTACTGCTACTATTATGATTCTTGGTGATACTTGTACTCGAGGTTGCAGGTTATACACCAATCAATTTTTCAATTTTCGCAATTTTATGTTGTTTTAGTATTCAAAATTTGGGAGTTTAGTTTTATAGATAAATTAAACTATGAAGCATGGATGCCAACACTTACGTCAGTGATAATTTGAGAAAATGAAAGTGATCTAGTGTAACTACATGTGTGTCGGATGTTGCACATACGATATGACATCAATATGAAATGTCGGTGGCTTGGTGCTACATTAAATAGATTTGAAATGTAGTGTGGCGTGTAGGTGTGTGCATATAGGTATAAGCAAGCTGTATTACTTTGGTAGTTTAGCTTGTTCTGTTGAAATTATGTCAGCTCAATAGTTTGCAATGATAAGTTGAATTGAGTGGCTCCATAGTTTTCACCCGGACAAATGTGTACACCCTTCGGTCACTATTATAAGCAAAAAAACCACTTTTTAGATTAATTGAATAACTGAAAAAAAACCATCGGTTTAGTCCCTGAACTATCAACCTCTCACCAATTTAGTCCCTGAACTTTGAACCTCTCACCAATTTAGTCCCTAACTATATGAAATACATCAATTTAGTCCCTAGTATTGAGATTGCGGGACCAAATTGATGGATTTTCATATACTTTATGGACTAAATTGACGTATTTTGCATTGTTTAGGGACTATTTAGAATATTTTTATAGTTTAGGGACTAAGTTGAAGAGAGACTGATAGTTTAGGGACTAAATTGATGGTTTATTCACTAACTGATGAATCTAAAAAATGGTTTTTTGGTTACAATAGTGACCAGAGGATGTATCTAACTACTGAATTTGTCATTGTTGAATAATGGATGAGAATGTTGATCAATTTCCTCCAAGTTTTATGTTTTTTTCATCTTTGAAATATAATCTCATCGAATGATATTGGAGCTCTAATACAATTCTGTTATGCAATTGTTATGCCGATGAGTGAAGGTTGCAGTACTCTGAACAATTCAGTTCTAAATCCCACGGATTTTTTTGCATAATTTAGTAAGTGCTAATTACATTCATCTAGGAGATGTGATTTACTTGACGGTACTTATGAATGCATAATCTAGTGCACTCATGGATTCTAAGCTGTGGTTTCTTTTATAGCTCAAAGCATAGTTTCATGGAACAACTGAACAAGTGGTTGAAGTTCGGATTTCAAACTGGTTTATCCTTGTAACACATGTGCATGCGCATACACACACATTAAGGATTTTCTCTTGTTCTTTGTGTGATTTCAATATAATTTATCTTACTTAAATTGTTATAAGCAAGTTGTAATACTTTGGTTGTTTACTGACTTGTTGTAATGAAATGATGCCAGTTAAAAAGTTTGCAGTGATCAGTTGAATTTAATGGCTCCATTTATCATCTAGTTGCTAAGCATTTAGTACATATGGTCATATTTTCATGTTCATTACAAGTTTAAACGAAATTATTCCTAGGTACTAAAAGATTTCCTAAAAATAAAAAAACTTCCATATTCTAATTCTAATGAAAATATTTCCAAGGGATGGGTAAAGAAAATAAACCCCCGTGAGAGTATATAGTTTATTTTTAATTTGCATGTCTACATTATTCTTGGAAATGTTTTGAAGTTTGGCTACACTTTTTTTTTTTGTTGAGAAAAGTATCCGGGATTACGATTTCTTACTCCTAAGAATGTTATTTAGGGGGATGTAAGTACTCCTAAAACCAGTGGAAGTTGTGTGTGGAATTTTTATGTTAGAACACTATAAATAAAATGAATTTATGTTATTTTTCAGATTTTGCAATGTTAAGACATCAAGGACTCCTCCACCACCTGACCCTGATGAGCCCACTAATGTGGCTGAAGCAATTGCATCGTGGGGTTTGGATTATGTGGTTATAACAAGCGTTGACCGTGATGATTTACCTGATCAAGGGAGCGGTCATTTTACTGAAACAGTTCAGAAGCTGAAGATACTGAAACCTAGCATACTGATAGAAGCCTTAGGTATGCATTTTGAATATATGTAGTTCCCGAAAATAGATTAATGTGATAATTTGTGAGAACATCATGTTCTAACTTCTATCTAATAGTAAACAACGATCAAGCCTTAGTTTGCTAGATGGGCATGGGTATAATAAAAAGGCGTCTATATGGTTTTCAGTTAGAGCTAGTAGTGGGAGTGGGTCATGAATGTGAAATGAAGGACTATCTTTTGTGAGTTTCTTTTTCAGCTAGAGTTATTTGATAGATAGGTGAATTAGGTGGTACCTAAAATGAAAATTCACTATGGAGTTTCTGTTGATGAATTTCTCTTTCGCTGCTGTTTACTATTGTGACTTGTACTGTTTGATAGTATGGCTTTTAATCAGAACTAAAAAAAAAAAACATGTTTATTGGGATTTGAGCACACGGGAATTAATCTGAAAGTTTGGTTTGTGTTACACATGTTCATTATAGGGTTGAGTGGGGCCAAGTTATATTATTAAGGAGACTTCACTCAAAATAAATTTCTCCATGTGACGATTGTTGCTCTAATTTTGTTGCAACAGTCCCCGACTTTCGAGGAAATGCTGAGTGTGTAGAGAAGGTTTCCAAATCAGGATTAGATGTCCTTGCGCATAATATTGAGACAGTTGAAGAGCTACAGAGTGCTGTGCGGGATCACCGTGCTAATTTTAAGCAATCTTTGGATGTTCTAATGATGGCCAAGGATTATGCCCCTGTGGGAACCCTCACCAAGACTTCAATAATGTTAGGTTGTGGGGAAACACCTGACCAAATTGTGAAGACAATGGAGAAGGTGAGAGCAGCAGGTGTTGATGTGATGACATTTGGTCAGTATATGAGACCCTCCAAACGCCATATGCCAGTATCAGAATATATTACACCTGAGGCCTTTGAGAAGTATCAGACTATTGGCATGGAAATGGTATGTCTATAGCATTTATTCCCGTGGTTCTGATTTTTTTATATTTTATTTATTTGTAGATGAAAGGAATGTATTTTGCTGGATGAAAAATAATTACTATTAGCATCCAAAGCTGTTATAATTTTGTTGGCATTCTCGTAATCATGCTTTTAGTCAGCATTTACTAAAATCTTTTAGTGGTGGTAATATTTGGTCCACAATACAAGGCATAAAATATTTAGGCTTCTGGCTGGTATTTATAATTTTGTATGTGTTTCTCAAAAGTTGATGCAGATAAAGTCATTTTCAGCATCGCTCTTGCATATTCAGTCAGTGTAAAGTAATATGTCTTGCTAATCCATATTAAATGTGGCCTTTTTTATCCCATAATTAGCAGTTAGCAGCATGCCCTGGTGGCCCATTCCTATAGAGATTTAATTGTAGCTCTGTAATTGGCATTTTGTACATCACCATGCATGCGTAATCATGGCACGTTTTTCTCCTTTTAATTGTTGCATGCTGGATTATGTTAATTTTTGGAAAAGCTCTAATTTATTAAGAACTTTTTGTAGCAGTATAGCAGTAATCATAACTTGATCATGTGGTATGAATGATGGACTAATTCTACTTTGTATGTGATAGGGATTTCGATATGTGGCATCCGGGCCCATGGTAAGGTCATCATACAAGGCAGGTGAATTCTATATTAAATCCATGATTAATTCAGATCGGGCTGTATCTTCTCAAAGCTGA

Protein sequence

>MS.gene31510.t1

MMYSRFRTVAKNLKSTTKPFSFTTATTTTTTASSSEFPQNLTELRARLARESPSLSDFISLKSNNAYSVEVGTKKNPLPKPKWMKESIPGGWKYVQIKKKLRELKLHTVCEEAKCPNMGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRTPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLPDQGSGHFTETVQKLKILKPSILIEALVPDFRGNAECVEKVSKSGLDVLAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYAPVGTLTKTSIMLGCGETPDQIVKTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFEKYQTIGMEMGFRYVASGPMVRSSYKAGEFYIKSMINSDRAVSSQS