Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31823.t1 | XP_013466379.1 | 96.4 | 280 | 8 | 1 | 1 | 280 | 1 | 278 | 3.40E-143 | 517.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31823.t1 | Q9FK13 | 51.1 | 278 | 123 | 4 | 6 | 280 | 5 | 272 | 9.2e-65 | 248.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31823.t1 | A0A072VQM9 | 96.4 | 280 | 8 | 1 | 1 | 280 | 1 | 278 | 2.4e-143 | 517.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050762 | MS.gene31823 | 0.809554 | 1.79E-50 | -1.69E-46 |
| MS.gene050763 | MS.gene31823 | 0.812413 | 4.29E-51 | -1.69E-46 |
| MS.gene054379 | MS.gene31823 | 0.81568 | 8.17E-52 | -1.69E-46 |
| MS.gene060084 | MS.gene31823 | 0.836645 | 8.29E-57 | -1.69E-46 |
| MS.gene060296 | MS.gene31823 | 0.81469 | 1.36E-51 | -1.69E-46 |
| MS.gene060869 | MS.gene31823 | 0.817831 | 2.69E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31823.t1 | MTR_1g028580 | 96.429 | 280 | 8 | 1 | 1 | 280 | 1 | 278 | 0.0 | 553 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31823.t1 | AT5G53280 | 51.648 | 273 | 117 | 6 | 12 | 280 | 11 | 272 | 8.99e-86 | 258 |
Find 40 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAATCATGAACATTCATTT+AGG | 0.181348 | 1.1:-14385475 | MS.gene31823:CDS |
| AAACTCTCATCTGTACATTT+TGG | 0.205115 | 1.1:+14385662 | None:intergenic |
| ATCTCTTGGGTTGGATCATA+TGG | 0.284716 | 1.1:-14385567 | MS.gene31823:CDS |
| AAGCGATTCTCGAGAAAATC+TGG | 0.314078 | 1.1:-14389659 | MS.gene31823:CDS |
| TAATCATGAACATTCATTTA+GGG | 0.333045 | 1.1:-14385474 | MS.gene31823:CDS |
| AGATGCTGCGATTGCACGTC+TGG | 0.365548 | 1.1:-14385822 | MS.gene31823:CDS |
| CGCGTTTCGATGAAATGAAA+TGG | 0.384371 | 1.1:-14389704 | None:intergenic |
| ATTAGATCTCTTCCCTTTCT+CGG | 0.390494 | 1.1:+14385634 | None:intergenic |
| TCTTCGTCCAGTGCCCATTC+TGG | 0.392364 | 1.1:-14385395 | MS.gene31823:CDS |
| GAGAAAATGAGATCGTGAAA+TGG | 0.415279 | 1.1:+14389602 | None:intergenic |
| AACATCCAAGTTACCAGAAT+GGG | 0.447938 | 1.1:+14385382 | None:intergenic |
| TGCTTTGCTTCAGTTGCAGC+AGG | 0.453364 | 1.1:-14385501 | MS.gene31823:CDS |
| TGTGAAGAAATCTCTTGGGT+TGG | 0.467925 | 1.1:-14385576 | MS.gene31823:CDS |
| GATCATATGGGCGGAATAGT+AGG | 0.483113 | 1.1:-14385554 | MS.gene31823:CDS |
| CAGTGCCCATTCTGGTAACT+TGG | 0.483764 | 1.1:-14385387 | MS.gene31823:CDS |
| TATGAGAAGAACAGCTCACT+TGG | 0.505741 | 1.1:-14385423 | MS.gene31823:CDS |
| AATGAAATGGAACACGCAAA+TGG | 0.509169 | 1.1:-14389691 | MS.gene31823:CDS |
| AACTCGCTGCTGAGTCTGAA+TGG | 0.511127 | 1.1:+14385850 | None:intergenic |
| AATAGTAGGAAATGCTGCTC+TGG | 0.514034 | 1.1:-14385540 | MS.gene31823:CDS |
| GGTAATAACGGTAACGGTAA+CGG | 0.519732 | 1.1:-14389507 | MS.gene31823:CDS |
| ACTTGTTCTTGCAATGAGAC+TGG | 0.528222 | 1.1:-14385789 | MS.gene31823:CDS |
| CCGTTACCGTTATTACCCTC+CGG | 0.542161 | 1.1:+14389513 | None:intergenic |
| TCACATGAAAATACTCGAGC+TGG | 0.544030 | 1.1:+14389376 | None:intergenic |
| AAACATCCAAGTTACCAGAA+TGG | 0.546101 | 1.1:+14385381 | None:intergenic |
| TCTCTTGGGTTGGATCATAT+GGG | 0.556457 | 1.1:-14385566 | MS.gene31823:CDS |
| AAGACTCTTCGCTTCATGAA+CGG | 0.561836 | 1.1:+14389434 | None:intergenic |
| ACGACACCGGAGGGTAATAA+CGG | 0.566312 | 1.1:-14389519 | MS.gene31823:CDS |
| AGCGATTCTCGAGAAAATCT+GGG | 0.598287 | 1.1:-14389658 | MS.gene31823:CDS |
| CAAGTTACCAGAATGGGCAC+TGG | 0.598404 | 1.1:+14385388 | None:intergenic |
| GTCTTCAAGATTCTCAAGCG+CGG | 0.605195 | 1.1:+14389398 | None:intergenic |
| TCATCAACATCGTCATTCAC+CGG | 0.607132 | 1.1:+14389459 | None:intergenic |
| AAGCAAAGCAATCATACTAA+CGG | 0.628861 | 1.1:+14385514 | None:intergenic |
| TGTTGCTAGCGAAACGACAC+CGG | 0.631231 | 1.1:-14389532 | MS.gene31823:CDS |
| TGCTAGCGAAACGACACCGG+AGG | 0.643973 | 1.1:-14389529 | MS.gene31823:CDS |
| GCTAGCGAAACGACACCGGA+GGG | 0.647863 | 1.1:-14389528 | MS.gene31823:CDS |
| TGTTCTTGCAATGAGACTGG+CGG | 0.651653 | 1.1:-14385786 | MS.gene31823:CDS |
| CCGGAGGGTAATAACGGTAA+CGG | 0.657670 | 1.1:-14389513 | MS.gene31823:CDS |
| CTTGGGTTGGATCATATGGG+CGG | 0.685255 | 1.1:-14385563 | MS.gene31823:CDS |
| ATGAGACTGGCGGAACATCG+TGG | 0.714608 | 1.1:-14385776 | MS.gene31823:CDS |
| GCAGATGTACATGATGCTAG+CGG | 0.758662 | 1.1:-14385713 | MS.gene31823:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATAAAGTAATTATTTAATA+GGG | - | chr1.1:14386095-14386114 | MS.gene31823:intron | 10.0% |
| !! | TGATAAAGTAATTATTTAAT+AGG | - | chr1.1:14386094-14386113 | MS.gene31823:intron | 10.0% |
| !! | TTAATTATTACAAAATTATG+TGG | - | chr1.1:14385862-14385881 | MS.gene31823:intron | 10.0% |
| !!! | ACAATTTTTTTTTTTTTTGA+GGG | - | chr1.1:14385988-14386007 | MS.gene31823:intron | 10.0% |
| !!! | AGAGATTTTTTATTTTTTTT+TGG | + | chr1.1:14388517-14388536 | None:intergenic | 10.0% |
| !!! | TACAATTTTTTTTTTTTTGA+GGG | - | chr1.1:14386020-14386039 | MS.gene31823:intron | 10.0% |
| !!! | TACAATTTTTTTTTTTTTTG+AGG | - | chr1.1:14385987-14386006 | MS.gene31823:intron | 10.0% |
| !!! | TTACAATTTTTTTTTTTTTG+AGG | - | chr1.1:14386019-14386038 | MS.gene31823:intron | 10.0% |
| !! | AACATTGAAATTCAAATAAA+AGG | - | chr1.1:14388131-14388150 | MS.gene31823:intron | 15.0% |
| !! | ACTATTATTAATGATTGAAT+AGG | - | chr1.1:14386398-14386417 | MS.gene31823:intron | 15.0% |
| !! | CTATTATTAATGATTGAATA+GGG | - | chr1.1:14386399-14386418 | MS.gene31823:intron | 15.0% |
| !! | TAATGATATAGAATTATTTG+TGG | - | chr1.1:14386718-14386737 | MS.gene31823:intron | 15.0% |
| !! | TATAAAAATGAGTATTATGT+TGG | + | chr1.1:14387496-14387515 | None:intergenic | 15.0% |
| !! | TTCATTATGATTTATGAAAT+GGG | + | chr1.1:14386676-14386695 | None:intergenic | 15.0% |
| !! | TTTCATTATGATTTATGAAA+TGG | + | chr1.1:14386677-14386696 | None:intergenic | 15.0% |
| !!! | AATTTTAAACCATTGTTATT+TGG | - | chr1.1:14387843-14387862 | MS.gene31823:intron | 15.0% |
| !!! | ATTATTGCATGAATTTTTTA+AGG | - | chr1.1:14387187-14387206 | MS.gene31823:intron | 15.0% |
| !!! | GATTTTTTATTTTTTTTTGG+TGG | + | chr1.1:14388514-14388533 | None:intergenic | 15.0% |
| !!! | GTTATATATTGTTCATTTTA+AGG | + | chr1.1:14386483-14386502 | None:intergenic | 15.0% |
| !!! | TCTACAATAAAATTGTATTT+TGG | + | chr1.1:14386373-14386392 | None:intergenic | 15.0% |
| !!! | TGACTTAATTATGTTTTAAT+CGG | - | chr1.1:14386136-14386155 | MS.gene31823:intron | 15.0% |
| !!! | TTATTGCATGAATTTTTTAA+GGG | - | chr1.1:14387188-14387207 | MS.gene31823:intron | 15.0% |
| !! | ATATTGCATATATACATTGT+CGG | + | chr1.1:14389023-14389042 | None:intergenic | 20.0% |
| !! | ATGAATTGTGATAATCAAAA+TGG | - | chr1.1:14387283-14387302 | MS.gene31823:intron | 20.0% |
| !! | CTTCTATTATCAGTATAATT+AGG | + | chr1.1:14388681-14388700 | None:intergenic | 20.0% |
| !! | GATTTAATGAGTTAATGTAA+AGG | - | chr1.1:14388952-14388971 | MS.gene31823:intron | 20.0% |
| !! | TAAATTCAGTTCAGATTAAA+TGG | - | chr1.1:14387244-14387263 | MS.gene31823:intron | 20.0% |
| !! | TAATCATGAACATTCATTTA+GGG | - | chr1.1:14389580-14389599 | MS.gene31823:CDS | 20.0% |
| !! | TAATGTAAAGGATTCTTATT+TGG | - | chr1.1:14388964-14388983 | MS.gene31823:intron | 20.0% |
| !! | TAATTATACTGAAAATGGTA+AGG | + | chr1.1:14388203-14388222 | None:intergenic | 20.0% |
| !! | TCTCCTAAGTTAAAAAATAA+TGG | + | chr1.1:14387938-14387957 | None:intergenic | 20.0% |
| !! | TGTTCTTAAACTTCTTATTA+TGG | + | chr1.1:14386519-14386538 | None:intergenic | 20.0% |
| !! | TTATCAACTCAAATTCAAAA+AGG | + | chr1.1:14386080-14386099 | None:intergenic | 20.0% |
| !! | TTCAAAAAATAAACAAGATG+TGG | + | chr1.1:14389138-14389157 | None:intergenic | 20.0% |
| !!! | AAGATACAACCAATTAATTT+TGG | - | chr1.1:14387803-14387822 | MS.gene31823:intron | 20.0% |
| !!! | AAGTGGTTATATTTTCTATA+TGG | + | chr1.1:14386448-14386467 | None:intergenic | 20.0% |
| !!! | AATAACCCTAATTCTTTTAA+CGG | - | chr1.1:14388836-14388855 | MS.gene31823:intron | 20.0% |
| !!! | AGACCATTATTTTTTAACTT+AGG | - | chr1.1:14387932-14387951 | MS.gene31823:intron | 20.0% |
| !!! | AGTGGTTATATTTTCTATAT+GGG | + | chr1.1:14386447-14386466 | None:intergenic | 20.0% |
| !!! | ATTGTTTGTAAGTTTTGATT+TGG | - | chr1.1:14386929-14386948 | MS.gene31823:intron | 20.0% |
| !!! | GTTTTGTTAGAAGTATTAAT+GGG | + | chr1.1:14388790-14388809 | None:intergenic | 20.0% |
| !!! | GTTTTTGTGATTTGAAATTT+TGG | - | chr1.1:14385788-14385807 | MS.gene31823:CDS | 20.0% |
| !!! | TCTTGTTTATTTTTTGAACA+TGG | - | chr1.1:14389140-14389159 | MS.gene31823:intron | 20.0% |
| !!! | TGTTTTGTTAGAAGTATTAA+TGG | + | chr1.1:14388791-14388810 | None:intergenic | 20.0% |
| !!! | TTAATGGGTATAAGAATATT+TGG | + | chr1.1:14388775-14388794 | None:intergenic | 20.0% |
| !!! | TTACAAACAATTTAAAGCAA+AGG | + | chr1.1:14386920-14386939 | None:intergenic | 20.0% |
| !!! | TTTTGTTGAATTTGATTCTA+GGG | - | chr1.1:14385722-14385741 | MS.gene31823:CDS | 20.0% |
| !!! | TTTTTATTTTTTTTTGGTGG+TGG | + | chr1.1:14388511-14388530 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGAATTTGATTCT+AGG | - | chr1.1:14385721-14385740 | MS.gene31823:CDS | 20.0% |
| ! | AAACCCAGATATTAATCATT+AGG | + | chr1.1:14388389-14388408 | None:intergenic | 25.0% |
| ! | AACCCAGATATTAATCATTA+GGG | + | chr1.1:14388388-14388407 | None:intergenic | 25.0% |
| ! | AATAATATGTCTCATTGATC+TGG | + | chr1.1:14388727-14388746 | None:intergenic | 25.0% |
| ! | AATCCCTAATGATTAATATC+TGG | - | chr1.1:14388382-14388401 | MS.gene31823:intron | 25.0% |
| ! | ATCCCTAATGATTAATATCT+GGG | - | chr1.1:14388383-14388402 | MS.gene31823:intron | 25.0% |
| ! | CAGAAAAAACTAGATGAAAA+AGG | + | chr1.1:14389050-14389069 | None:intergenic | 25.0% |
| ! | CATGCAATAATATTGAAACA+AGG | + | chr1.1:14387178-14387197 | None:intergenic | 25.0% |
| ! | CTAATCATGAACATTCATTT+AGG | - | chr1.1:14389579-14389598 | MS.gene31823:CDS | 25.0% |
| ! | TAAGGAATAAATAGAGAAAG+TGG | + | chr1.1:14386465-14386484 | None:intergenic | 25.0% |
| ! | TAATTTCCACCAAATAACAA+TGG | + | chr1.1:14387855-14387874 | None:intergenic | 25.0% |
| ! | TATATCATATGTGTTCTACT+AGG | - | chr1.1:14386967-14386986 | MS.gene31823:intron | 25.0% |
| ! | TATATTTGTAACAAGCTAAG+AGG | + | chr1.1:14387655-14387674 | None:intergenic | 25.0% |
| ! | TCATGCATTCCAAAATTAAT+TGG | + | chr1.1:14387815-14387834 | None:intergenic | 25.0% |
| ! | TGAAATTACAAGTAAACACT+AGG | - | chr1.1:14388030-14388049 | MS.gene31823:intron | 25.0% |
| ! | TGCTCTAATTATACTGAAAA+TGG | + | chr1.1:14388208-14388227 | None:intergenic | 25.0% |
| ! | TGTGTGTTACAATATTAGTT+TGG | + | chr1.1:14387601-14387620 | None:intergenic | 25.0% |
| ! | TTAATAGGGTTAATTAGCAT+TGG | - | chr1.1:14386109-14386128 | MS.gene31823:intron | 25.0% |
| ! | TTCTTACTTCTTTAGATTAG+TGG | + | chr1.1:14388068-14388087 | None:intergenic | 25.0% |
| !! | AATTTTGTGAAGAAATCTCT+TGG | - | chr1.1:14389473-14389492 | MS.gene31823:CDS | 25.0% |
| !! | ATTAATCATTAGGGATTTTG+TGG | + | chr1.1:14388379-14388398 | None:intergenic | 25.0% |
| !! | ATTTTGTGAAGAAATCTCTT+GGG | - | chr1.1:14389474-14389493 | MS.gene31823:CDS | 25.0% |
| !! | CACTTTATGATTTGAGATTT+AGG | - | chr1.1:14385931-14385950 | MS.gene31823:intron | 25.0% |
| !! | GTTATTTCATATGTTACATG+TGG | - | chr1.1:14387445-14387464 | MS.gene31823:intron | 25.0% |
| !! | TTAATCATTAGGGATTTTGT+GGG | + | chr1.1:14388378-14388397 | None:intergenic | 25.0% |
| !! | TTGTTTATGTGAAGGATTTT+CGG | - | chr1.1:14385572-14385591 | MS.gene31823:CDS | 25.0% |
| !!! | AGTTTTGATTTGGAATATTC+TGG | - | chr1.1:14386939-14386958 | MS.gene31823:intron | 25.0% |
| !!! | CTTTTTCATCTAGTTTTTTC+TGG | - | chr1.1:14389048-14389067 | MS.gene31823:intron | 25.0% |
| !!! | TCAGTATAATTAGGAGTATT+AGG | + | chr1.1:14388672-14388691 | None:intergenic | 25.0% |
| !!! | TTTAAACCATTGTTATTTGG+TGG | - | chr1.1:14387846-14387865 | MS.gene31823:intron | 25.0% |
| !!! | TTTTTTTTTTGAGGGATGAT+AGG | - | chr1.1:14385996-14386015 | MS.gene31823:intron | 25.0% |
| AAAATGAGTGATGTGAACAT+AGG | - | chr1.1:14386807-14386826 | MS.gene31823:intron | 30.0% | |
| AAATGTTATACTCCACAATG+GGG | + | chr1.1:14386597-14386616 | None:intergenic | 30.0% | |
| AACAATTGTTTGTGAGAAAC+TGG | - | chr1.1:14386345-14386364 | MS.gene31823:intron | 30.0% | |
| AACGGTAAGTTTGTATAACA+GGG | - | chr1.1:14388921-14388940 | MS.gene31823:intron | 30.0% | |
| AAGCAAAGCAATCATACTAA+CGG | + | chr1.1:14389543-14389562 | None:intergenic | 30.0% | |
| AAGTAAGAAGTTTATGCCTT+GGG | - | chr1.1:14388079-14388098 | MS.gene31823:intron | 30.0% | |
| AAGTTTAAGAACATCCACAA+TGG | - | chr1.1:14386526-14386545 | MS.gene31823:intron | 30.0% | |
| ATTGCCTAAAGTTCATTGTT+AGG | + | chr1.1:14387361-14387380 | None:intergenic | 30.0% | |
| ATTGTGTATGCTATACTACA+AGG | + | chr1.1:14387912-14387931 | None:intergenic | 30.0% | |
| CAAATGTTATACTCCACAAT+GGG | + | chr1.1:14386598-14386617 | None:intergenic | 30.0% | |
| CAACAATTTGGTACTATGAT+TGG | + | chr1.1:14387329-14387348 | None:intergenic | 30.0% | |
| CAGTATAATTAGAGCATAGA+TGG | - | chr1.1:14388212-14388231 | MS.gene31823:intron | 30.0% | |
| CATTGTGGAGTATAACATTT+GGG | - | chr1.1:14386597-14386616 | MS.gene31823:intron | 30.0% | |
| CCTCGTTAGAAATACAAAAT+AGG | + | chr1.1:14386746-14386765 | None:intergenic | 30.0% | |
| CTTTAGGCAATAGAGAAAAT+TGG | - | chr1.1:14387370-14387389 | MS.gene31823:intron | 30.0% | |
| GACAATGCATAATATATGCA+AGG | - | chr1.1:14388466-14388485 | MS.gene31823:intron | 30.0% | |
| GCATATTAAGTAAAAACGTG+AGG | + | chr1.1:14387888-14387907 | None:intergenic | 30.0% | |
| TAAGCATGCAATAAACTGAT+TGG | + | chr1.1:14389090-14389109 | None:intergenic | 30.0% | |
| TACTTTAAGCATTAATCCCA+AGG | + | chr1.1:14388098-14388117 | None:intergenic | 30.0% | |
| TATTTAGCACCACACTAAAT+AGG | - | chr1.1:14386568-14386587 | MS.gene31823:intron | 30.0% | |
| TCAATAGAACTAATGTTCCA+TGG | - | chr1.1:14388898-14388917 | MS.gene31823:intron | 30.0% | |
| TTGAGACAAAAACATTGATG+AGG | + | chr1.1:14389448-14389467 | None:intergenic | 30.0% | |
| TTGTGTATGCTATACTACAA+GGG | + | chr1.1:14387911-14387930 | None:intergenic | 30.0% | |
| ! | AAACTCTCATCTGTACATTT+TGG | + | chr1.1:14389395-14389414 | None:intergenic | 30.0% |
| ! | AACAAGTTTTCAAAGCTCTT+GGG | + | chr1.1:14387961-14387980 | None:intergenic | 30.0% |
| ! | GTGTTACAATATTAGTTTGG+CGG | + | chr1.1:14387598-14387617 | None:intergenic | 30.0% |
| ! | TAATCATTAGGGATTTTGTG+GGG | + | chr1.1:14388377-14388396 | None:intergenic | 30.0% |
| ! | TATTTAGTGTGGTGCTAAAT+AGG | + | chr1.1:14386569-14386588 | None:intergenic | 30.0% |
| ! | TCTTTGAGGAAATGAATGAT+AGG | - | chr1.1:14385963-14385982 | MS.gene31823:intron | 30.0% |
| ! | TGTTCACATCACTCATTTTA+TGG | + | chr1.1:14386806-14386825 | None:intergenic | 30.0% |
| ! | TTAGGTTAATTGACTCTTTG+AGG | - | chr1.1:14385949-14385968 | MS.gene31823:intron | 30.0% |
| !! | AAGAGCTTTGAAAACTTGTT+GGG | - | chr1.1:14387961-14387980 | MS.gene31823:intron | 30.0% |
| !! | CCTATTTTGTATTTCTAACG+AGG | - | chr1.1:14386743-14386762 | MS.gene31823:intron | 30.0% |
| !! | TTGAATTTGATTCTAGGGTT+TGG | - | chr1.1:14385727-14385746 | MS.gene31823:CDS | 30.0% |
| !!! | AGGTATTTGAGTGGTTTTAT+AGG | + | chr1.1:14388354-14388373 | None:intergenic | 30.0% |
| !!! | TAACGGTTTTGTTTATGTGA+AGG | - | chr1.1:14385564-14385583 | MS.gene31823:CDS | 30.0% |
| !!! | TGGTAACTTGGATGTTTTTT+TGG | - | chr1.1:14389679-14389698 | MS.gene31823:CDS | 30.0% |
| AAACATCCAAGTTACCAGAA+TGG | + | chr1.1:14389676-14389695 | None:intergenic | 35.0% | |
| AACATCCAAGTTACCAGAAT+GGG | + | chr1.1:14389675-14389694 | None:intergenic | 35.0% | |
| AAGTAAACACTAGGAAGTCA+TGG | - | chr1.1:14388039-14388058 | MS.gene31823:intron | 35.0% | |
| AATGTTATACTCCACAATGG+GGG | + | chr1.1:14386596-14386615 | None:intergenic | 35.0% | |
| ACGGTAAGTTTGTATAACAG+GGG | - | chr1.1:14388922-14388941 | MS.gene31823:intron | 35.0% | |
| ACTCATATTGGGTGCTTAAA+TGG | + | chr1.1:14386837-14386856 | None:intergenic | 35.0% | |
| AGAACTAATGTTCCATGGAA+CGG | - | chr1.1:14388903-14388922 | MS.gene31823:intron | 35.0% | |
| AGGAGTCAGATTCAACAATT+TGG | + | chr1.1:14387341-14387360 | None:intergenic | 35.0% | |
| AGGCAATAGAGAAAATTGGA+AGG | - | chr1.1:14387374-14387393 | MS.gene31823:intron | 35.0% | |
| ATAGGTTACAATTGCGTGTA+GGG | - | chr1.1:14386046-14386065 | MS.gene31823:intron | 35.0% | |
| ATTAGAGCATAGATGGTCAT+TGG | - | chr1.1:14388219-14388238 | MS.gene31823:intron | 35.0% | |
| ATTAGATCTCTTCCCTTTCT+CGG | + | chr1.1:14389423-14389442 | None:intergenic | 35.0% | |
| CAAAAACTTCAGGTGAAACA+AGG | + | chr1.1:14389367-14389386 | None:intergenic | 35.0% | |
| CCAAATGTTATACTCCACAA+TGG | + | chr1.1:14386599-14386618 | None:intergenic | 35.0% | |
| CCAGACCGTTAAAAGAATTA+GGG | + | chr1.1:14388844-14388863 | None:intergenic | 35.0% | |
| CCATTGTGGAGTATAACATT+TGG | - | chr1.1:14386596-14386615 | MS.gene31823:intron | 35.0% | |
| CTCATATTGGGTGCTTAAAT+GGG | + | chr1.1:14386836-14386855 | None:intergenic | 35.0% | |
| GAACGGTAAGTTTGTATAAC+AGG | - | chr1.1:14388920-14388939 | MS.gene31823:intron | 35.0% | |
| GAAGCACACATTATATGTTG+AGG | + | chr1.1:14387696-14387715 | None:intergenic | 35.0% | |
| GAAGTAAGAAGTTTATGCCT+TGG | - | chr1.1:14388078-14388097 | MS.gene31823:intron | 35.0% | |
| GACTCCTAACAATGAACTTT+AGG | - | chr1.1:14387354-14387373 | MS.gene31823:intron | 35.0% | |
| GAGAAAATGAGATCGTGAAA+TGG | + | chr1.1:14385455-14385474 | None:intergenic | 35.0% | |
| GATGTGGCAATAAAAAGTCA+TGG | + | chr1.1:14389122-14389141 | None:intergenic | 35.0% | |
| GGTCTACATATCATACAGAA+AGG | + | chr1.1:14389186-14389205 | None:intergenic | 35.0% | |
| TATACAAACTTACCGTTCCA+TGG | + | chr1.1:14388918-14388937 | None:intergenic | 35.0% | |
| TCCAGACCGTTAAAAGAATT+AGG | + | chr1.1:14388845-14388864 | None:intergenic | 35.0% | |
| TGAAAATGGTAAGGAAGAGT+TGG | + | chr1.1:14388194-14388213 | None:intergenic | 35.0% | |
| TGTGTATGCTATACTACAAG+GGG | + | chr1.1:14387910-14387929 | None:intergenic | 35.0% | |
| TTAAGAACATCCACAATGGT+GGG | - | chr1.1:14386530-14386549 | MS.gene31823:intron | 35.0% | |
| TTTAAGAACATCCACAATGG+TGG | - | chr1.1:14386529-14386548 | MS.gene31823:intron | 35.0% | |
| TTTGGTTGTCCAAAAACTTC+AGG | + | chr1.1:14389377-14389396 | None:intergenic | 35.0% | |
| TTTGTTCTTAATCGCGTTTG+TGG | - | chr1.1:14386253-14386272 | MS.gene31823:intron | 35.0% | |
| ! | CAACAAGTTTTCAAAGCTCT+TGG | + | chr1.1:14387962-14387981 | None:intergenic | 35.0% |
| ! | CTTGTTTCACCTGAAGTTTT+TGG | - | chr1.1:14389365-14389384 | MS.gene31823:intron | 35.0% |
| ! | TACAACAGAGCACTCATATT+GGG | + | chr1.1:14386848-14386867 | None:intergenic | 35.0% |
| ! | TAGGGTTAATTAGCATTGGA+TGG | - | chr1.1:14386113-14386132 | MS.gene31823:intron | 35.0% |
| ! | TGATCTTAGATCAGTTGGTA+GGG | - | chr1.1:14388444-14388463 | MS.gene31823:intron | 35.0% |
| !! | CAAGAGCTTTGAAAACTTGT+TGG | - | chr1.1:14387960-14387979 | MS.gene31823:intron | 35.0% |
| !! | GGTTTGGTGTATTACGAATT+AGG | - | chr1.1:14385743-14385762 | MS.gene31823:CDS | 35.0% |
| !! | TTAGTTGAGTTGGACAATAC+TGG | - | chr1.1:14386995-14387014 | MS.gene31823:intron | 35.0% |
| !!! | GTTTTTTCTGGAACATGAGA+AGG | - | chr1.1:14389060-14389079 | MS.gene31823:intron | 35.0% |
| !!! | TTGGATGTTTTTTTGGCTAG+AGG | - | chr1.1:14389686-14389705 | MS.gene31823:CDS | 35.0% |
| AAACCTCTGTTGCAAACCAA+AGG | - | chr1.1:14388310-14388329 | MS.gene31823:intron | 40.0% | |
| AACCCACATTGTCAATCCTT+GGG | + | chr1.1:14387037-14387056 | None:intergenic | 40.0% | |
| AACCTCTGTTGCAAACCAAA+GGG | - | chr1.1:14388311-14388330 | MS.gene31823:intron | 40.0% | |
| AAGACTCTTCGCTTCATGAA+CGG | + | chr1.1:14385623-14385642 | None:intergenic | 40.0% | |
| AAGCGATTCTCGAGAAAATC+TGG | - | chr1.1:14385395-14385414 | MS.gene31823:CDS | 40.0% | |
| AATAGTAGGAAATGCTGCTC+TGG | - | chr1.1:14389514-14389533 | MS.gene31823:CDS | 40.0% | |
| ACAATAGTATTGTCGCAGCA+TGG | + | chr1.1:14388607-14388626 | None:intergenic | 40.0% | |
| ACATTTGACCATCAAACAGC+AGG | - | chr1.1:14387133-14387152 | MS.gene31823:intron | 40.0% | |
| ACGAGGACAAACTGAAATTC+AGG | + | chr1.1:14388425-14388444 | None:intergenic | 40.0% | |
| ACTTGTTCTTGCAATGAGAC+TGG | - | chr1.1:14389265-14389284 | MS.gene31823:intron | 40.0% | |
| AGCGATTCTCGAGAAAATCT+GGG | - | chr1.1:14385396-14385415 | MS.gene31823:CDS | 40.0% | |
| ATTAGGTACACAGTATACCC+AGG | + | chr1.1:14388655-14388674 | None:intergenic | 40.0% | |
| CACATGAATATATGACCCCA+AGG | - | chr1.1:14387018-14387037 | MS.gene31823:intron | 40.0% | |
| CATTTGACCATCAAACAGCA+GGG | - | chr1.1:14387134-14387153 | MS.gene31823:intron | 40.0% | |
| CTCTGTTGTAGATGGTCTAA+TGG | - | chr1.1:14386858-14386877 | MS.gene31823:intron | 40.0% | |
| GATAGGTTACAATTGCGTGT+AGG | - | chr1.1:14386045-14386064 | MS.gene31823:intron | 40.0% | |
| GTACTATGATTGGCATAGCA+AGG | + | chr1.1:14387319-14387338 | None:intergenic | 40.0% | |
| GTATAACATTTGGGTGGCTA+TGG | - | chr1.1:14386606-14386625 | MS.gene31823:intron | 40.0% | |
| GTGATCTTAGATCAGTTGGT+AGG | - | chr1.1:14388443-14388462 | MS.gene31823:intron | 40.0% | |
| TATGAGAAGAACAGCTCACT+TGG | - | chr1.1:14389631-14389650 | MS.gene31823:CDS | 40.0% | |
| TATGAGTGCTCTGTTGTAGA+TGG | - | chr1.1:14386850-14386869 | MS.gene31823:intron | 40.0% | |
| TCACATGAAAATACTCGAGC+TGG | + | chr1.1:14385681-14385700 | None:intergenic | 40.0% | |
| TCATCAACATCGTCATTCAC+CGG | + | chr1.1:14385598-14385617 | None:intergenic | 40.0% | |
| TGAACTAAGCTTGGCTTAGT+TGG | + | chr1.1:14387553-14387572 | None:intergenic | 40.0% | |
| TGACCAAATGACCAACTCTA+GGG | + | chr1.1:14388257-14388276 | None:intergenic | 40.0% | |
| TGGAAGGTTGTCTGATAAGT+GGG | - | chr1.1:14387390-14387409 | MS.gene31823:intron | 40.0% | |
| TGGTTTACGCTACTAGACAT+AGG | + | chr1.1:14387533-14387552 | None:intergenic | 40.0% | |
| TGTGAAGAAATCTCTTGGGT+TGG | - | chr1.1:14389478-14389497 | MS.gene31823:CDS | 40.0% | |
| TGTGGAGTATAACATTTGGG+TGG | - | chr1.1:14386600-14386619 | MS.gene31823:intron | 40.0% | |
| TTGGAAGGTTGTCTGATAAG+TGG | - | chr1.1:14387389-14387408 | MS.gene31823:intron | 40.0% | |
| ! | CCCTAATTCTTTTAACGGTC+TGG | - | chr1.1:14388841-14388860 | MS.gene31823:intron | 40.0% |
| ! | CTACAACAGAGCACTCATAT+TGG | + | chr1.1:14386849-14386868 | None:intergenic | 40.0% |
| ! | GGTAATAACGGTAACGGTAA+CGG | - | chr1.1:14385547-14385566 | MS.gene31823:CDS | 40.0% |
| ! | GGTGCTGGGTTGAAAAAAAT+TGG | - | chr1.1:14386764-14386783 | MS.gene31823:intron | 40.0% |
| ! | GTTGAGGCAATTTTCTGTTG+CGG | + | chr1.1:14387680-14387699 | None:intergenic | 40.0% |
| ! | TCTCTATTTTGCCGCAAAAG+TGG | - | chr1.1:14388532-14388551 | MS.gene31823:intron | 40.0% |
| ! | TGTATTTCTAACGAGGTGCT+GGG | - | chr1.1:14386750-14386769 | MS.gene31823:intron | 40.0% |
| ! | TTATGTGAAGGATTTTCGGC+CGG | - | chr1.1:14385576-14385595 | MS.gene31823:CDS | 40.0% |
| ! | TTGTATTTCTAACGAGGTGC+TGG | - | chr1.1:14386749-14386768 | MS.gene31823:intron | 40.0% |
| !! | AGAGTTTTGTAGCCGAGAAA+GGG | - | chr1.1:14389408-14389427 | MS.gene31823:CDS | 40.0% |
| !! | ATCTCTTGGGTTGGATCATA+TGG | - | chr1.1:14389487-14389506 | MS.gene31823:CDS | 40.0% |
| !! | ATGTGGGTTGGACAAATGAA+AGG | - | chr1.1:14387048-14387067 | MS.gene31823:intron | 40.0% |
| !! | TCTCTTGGGTTGGATCATAT+GGG | - | chr1.1:14389488-14389507 | MS.gene31823:CDS | 40.0% |
| !!! | ATTTTTTTTTGGTGGTGGCC+AGG | + | chr1.1:14388506-14388525 | None:intergenic | 40.0% |
| !!! | TTTTTTTTTGGTGGTGGCCA+GGG | + | chr1.1:14388505-14388524 | None:intergenic | 40.0% |
| AAACAGCGCATCTTGAAGTC+AGG | - | chr1.1:14387751-14387770 | MS.gene31823:intron | 45.0% | |
| AATCACACCAGAACTCCCTT+TGG | + | chr1.1:14388329-14388348 | None:intergenic | 45.0% | |
| ACCCACATTGTCAATCCTTG+GGG | + | chr1.1:14387036-14387055 | None:intergenic | 45.0% | |
| ACCCCAAGGATTGACAATGT+GGG | - | chr1.1:14387032-14387051 | MS.gene31823:intron | 45.0% | |
| CAACCCACATTGTCAATCCT+TGG | + | chr1.1:14387038-14387057 | None:intergenic | 45.0% | |
| CAAGGATTGACAATGTGGGT+TGG | - | chr1.1:14387036-14387055 | MS.gene31823:intron | 45.0% | |
| CAGTCGTACTGAACTAAGCT+TGG | + | chr1.1:14387562-14387581 | None:intergenic | 45.0% | |
| CCTCGTGATCTTAGATCAGT+TGG | - | chr1.1:14388439-14388458 | MS.gene31823:intron | 45.0% | |
| CTAGGCGAGTTTAGTTGAGT+TGG | - | chr1.1:14386985-14387004 | MS.gene31823:intron | 45.0% | |
| GATCATATGGGCGGAATAGT+AGG | - | chr1.1:14389500-14389519 | MS.gene31823:CDS | 45.0% | |
| GGAAGTGAAGTCATCGTTAC+TGG | - | chr1.1:14387772-14387791 | MS.gene31823:intron | 45.0% | |
| GTCTTCAAGATTCTCAAGCG+CGG | + | chr1.1:14385659-14385678 | None:intergenic | 45.0% | |
| GTGACCAAATGACCAACTCT+AGG | + | chr1.1:14388258-14388277 | None:intergenic | 45.0% | |
| TGACTGCAGCTAGATGTGTT+TGG | + | chr1.1:14388001-14388020 | None:intergenic | 45.0% | |
| TGTTCTTGCAATGAGACTGG+CGG | - | chr1.1:14389268-14389287 | MS.gene31823:intron | 45.0% | |
| TTATAGCTGGTCCCTAGAGT+TGG | - | chr1.1:14388243-14388262 | MS.gene31823:intron | 45.0% | |
| TTGCAAACCAAAGGGAGTTC+TGG | - | chr1.1:14388319-14388338 | MS.gene31823:intron | 45.0% | |
| TTTCTCACTTCGTCCTCGTT+CGG | + | chr1.1:14388281-14388300 | None:intergenic | 45.0% | |
| ! | ATCATCACCCTGCTGTTTGA+TGG | + | chr1.1:14387144-14387163 | None:intergenic | 45.0% |
| ! | CCAACTGATCTAAGATCACG+AGG | + | chr1.1:14388442-14388461 | None:intergenic | 45.0% |
| ! | TCATTAGGGATTTTGTGGGG+AGG | + | chr1.1:14388374-14388393 | None:intergenic | 45.0% |
| !! | CTGTCTCTCTTCACTTTTCG+CGG | - | chr1.1:14386648-14386667 | MS.gene31823:intron | 45.0% |
| !! | GAGAGTTTTGTAGCCGAGAA+AGG | - | chr1.1:14389407-14389426 | MS.gene31823:CDS | 45.0% |
| !! | GATGGTCATTGGCTTATAGC+TGG | - | chr1.1:14388230-14388249 | MS.gene31823:intron | 45.0% |
| !! | TTTGTGGGGAGGTATTTGAG+TGG | + | chr1.1:14388363-14388382 | None:intergenic | 45.0% |
| AACTCGCTGCTGAGTCTGAA+TGG | + | chr1.1:14389207-14389226 | None:intergenic | 50.0% | |
| ACCCAGGCTTATCAACTGCA+CGG | + | chr1.1:14388639-14388658 | None:intergenic | 50.0% | |
| ACGACACCGGAGGGTAATAA+CGG | - | chr1.1:14385535-14385554 | MS.gene31823:CDS | 50.0% | |
| AGAGAGACAGAGAGAGAGAG+AGG | + | chr1.1:14386638-14386657 | None:intergenic | 50.0% | |
| AGTGAACAGCGACACAATGG+AGG | - | chr1.1:14388562-14388581 | MS.gene31823:intron | 50.0% | |
| CAAGTTACCAGAATGGGCAC+TGG | + | chr1.1:14389669-14389688 | None:intergenic | 50.0% | |
| CAGTGCCCATTCTGGTAACT+TGG | - | chr1.1:14389667-14389686 | MS.gene31823:CDS | 50.0% | |
| CCGGAGGGTAATAACGGTAA+CGG | - | chr1.1:14385541-14385560 | MS.gene31823:CDS | 50.0% | |
| CCGTTACCGTTATTACCCTC+CGG | + | chr1.1:14385544-14385563 | None:intergenic | 50.0% | |
| CTAAATAGGCACCCCCATTG+TGG | - | chr1.1:14386582-14386601 | MS.gene31823:intron | 50.0% | |
| GACAGTGAACAGCGACACAA+TGG | - | chr1.1:14388559-14388578 | MS.gene31823:intron | 50.0% | |
| GACCCCAAGGATTGACAATG+TGG | - | chr1.1:14387031-14387050 | MS.gene31823:intron | 50.0% | |
| GAGAGACAGAGAGAGAGAGA+GGG | + | chr1.1:14386637-14386656 | None:intergenic | 50.0% | |
| GTGAACAGCGACACAATGGA+GGG | - | chr1.1:14388563-14388582 | MS.gene31823:intron | 50.0% | |
| TGCTTTGCTTCAGTTGCAGC+AGG | - | chr1.1:14389553-14389572 | MS.gene31823:CDS | 50.0% | |
| TGTTGCTAGCGAAACGACAC+CGG | - | chr1.1:14385522-14385541 | MS.gene31823:CDS | 50.0% | |
| TTCTCACTTCGTCCTCGTTC+GGG | + | chr1.1:14388280-14388299 | None:intergenic | 50.0% | |
| ! | GGTCCCTAGAGTTGGTCATT+TGG | - | chr1.1:14388251-14388270 | MS.gene31823:intron | 50.0% |
| !! | ATGGGGGTGCCTATTTAGTG+TGG | + | chr1.1:14386580-14386599 | None:intergenic | 50.0% |
| !! | CTCCCTTTGGTTTGCAACAG+AGG | + | chr1.1:14388316-14388335 | None:intergenic | 50.0% |
| !! | CTTGGGTTGGATCATATGGG+CGG | - | chr1.1:14389491-14389510 | MS.gene31823:CDS | 50.0% |
| !! | GGAGGGCATTGTATCTGCTA+CGG | - | chr1.1:14388580-14388599 | MS.gene31823:intron | 50.0% |
| !! | TCCGTGCAGTTGATAAGCCT+GGG | - | chr1.1:14388635-14388654 | MS.gene31823:intron | 50.0% |
| !! | TTCCGTGCAGTTGATAAGCC+TGG | - | chr1.1:14388634-14388653 | MS.gene31823:intron | 50.0% |
| AAGGTCCAGCGTTCAAACCC+TGG | - | chr1.1:14388485-14388504 | MS.gene31823:intron | 55.0% | |
| ACTACTGCGCTACAGCGTTG+TGG | + | chr1.1:14386214-14386233 | None:intergenic | 55.0% | |
| AGATGCTGCGATTGCACGTC+TGG | - | chr1.1:14389232-14389251 | MS.gene31823:intron | 55.0% | |
| AGCACAAGCACCCACCATTG+TGG | + | chr1.1:14386543-14386562 | None:intergenic | 55.0% | |
| ATGAGACTGGCGGAACATCG+TGG | - | chr1.1:14389278-14389297 | MS.gene31823:intron | 55.0% | |
| GTCATTTGGTCACCCGAACG+AGG | - | chr1.1:14388265-14388284 | MS.gene31823:intron | 55.0% | |
| TCTTCGTCCAGTGCCCATTC+TGG | - | chr1.1:14389659-14389678 | MS.gene31823:CDS | 55.0% | |
| !!! | CACTGTCGCAGCCACTTTTG+CGG | + | chr1.1:14388546-14388565 | None:intergenic | 55.0% |
| GCTAGCGAAACGACACCGGA+GGG | - | chr1.1:14385526-14385545 | MS.gene31823:CDS | 60.0% | |
| TGCTAGCGAAACGACACCGG+AGG | - | chr1.1:14385525-14385544 | MS.gene31823:CDS | 60.0% | |
| GGTGGCCAGGGTTTGAACGC+TGG | + | chr1.1:14388493-14388512 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 14385364 | 14389712 | 14385364 | ID=MS.gene31823 |
| chr1.1 | mRNA | 14385364 | 14389712 | 14385364 | ID=MS.gene31823.t1;Parent=MS.gene31823 |
| chr1.1 | exon | 14389380 | 14389712 | 14389380 | ID=MS.gene31823.t1.exon1;Parent=MS.gene31823.t1 |
| chr1.1 | CDS | 14389380 | 14389712 | 14389380 | ID=cds.MS.gene31823.t1;Parent=MS.gene31823.t1 |
| chr1.1 | exon | 14385364 | 14385873 | 14385364 | ID=MS.gene31823.t1.exon2;Parent=MS.gene31823.t1 |
| chr1.1 | CDS | 14385364 | 14385873 | 14385364 | ID=cds.MS.gene31823.t1;Parent=MS.gene31823.t1 |
| Gene Sequence |
| Protein sequence |
