Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32004.t1 | XP_013456979.1 | 98.9 | 620 | 7 | 0 | 1 | 620 | 1 | 620 | 0.00E+00 | 1235.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32004.t1 | Q9SGN6 | 62.3 | 615 | 211 | 9 | 16 | 620 | 9 | 612 | 4.3e-216 | 752.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32004.t1 | A0A072UYS7 | 98.9 | 620 | 7 | 0 | 1 | 620 | 1 | 620 | 0.0e+00 | 1235.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene32004 | MS.gene62676 | PPI |
| MS.gene004330 | MS.gene32004 | PPI |
| MS.gene058592 | MS.gene32004 | PPI |
| MS.gene32004 | MS.gene95833 | PPI |
| MS.gene015641 | MS.gene32004 | PPI |
| MS.gene32004 | MS.gene002651 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32004.t1 | MTR_4g088500 | 98.871 | 620 | 7 | 0 | 1 | 620 | 1 | 620 | 0.0 | 1264 |
| MS.gene32004.t1 | MTR_7g116350 | 70.767 | 626 | 43 | 9 | 2 | 620 | 316 | 808 | 0.0 | 801 |
| MS.gene32004.t1 | MTR_2g005730 | 52.658 | 602 | 261 | 9 | 21 | 614 | 11 | 596 | 0.0 | 615 |
| MS.gene32004.t1 | MTR_8g095090 | 51.244 | 603 | 273 | 9 | 20 | 617 | 8 | 594 | 0.0 | 572 |
| MS.gene32004.t1 | MTR_8g095090 | 51.810 | 525 | 236 | 7 | 96 | 617 | 1 | 511 | 5.80e-175 | 507 |
| MS.gene32004.t1 | MTR_8g097210 | 41.491 | 617 | 320 | 11 | 25 | 611 | 11 | 616 | 2.80e-160 | 473 |
| MS.gene32004.t1 | MTR_3g084930 | 40.492 | 610 | 335 | 9 | 23 | 611 | 15 | 617 | 1.89e-156 | 463 |
| MS.gene32004.t1 | MTR_8g095110 | 43.377 | 604 | 288 | 12 | 21 | 616 | 12 | 569 | 7.73e-154 | 455 |
| MS.gene32004.t1 | MTR_8g095150 | 41.068 | 599 | 290 | 15 | 21 | 613 | 12 | 553 | 8.13e-144 | 429 |
| MS.gene32004.t1 | MTR_8g097210 | 42.561 | 531 | 281 | 8 | 96 | 611 | 1 | 522 | 1.17e-143 | 427 |
| MS.gene32004.t1 | MTR_8g095140 | 40.164 | 610 | 304 | 12 | 21 | 613 | 12 | 577 | 5.60e-140 | 420 |
| MS.gene32004.t1 | MTR_8g105700 | 40.436 | 596 | 300 | 9 | 22 | 611 | 6 | 552 | 3.59e-137 | 412 |
| MS.gene32004.t1 | MTR_2g005730 | 52.381 | 399 | 173 | 6 | 22 | 414 | 12 | 399 | 1.46e-132 | 396 |
| MS.gene32004.t1 | MTR_2g017740 | 38.602 | 601 | 297 | 12 | 25 | 611 | 22 | 564 | 7.18e-128 | 388 |
| MS.gene32004.t1 | MTR_8g095130 | 41.734 | 496 | 250 | 10 | 127 | 619 | 12 | 471 | 3.26e-115 | 352 |
| MS.gene32004.t1 | MTR_4g027860 | 42.241 | 348 | 170 | 6 | 273 | 611 | 79 | 404 | 5.27e-79 | 256 |
| MS.gene32004.t1 | MTR_4g027880 | 38.854 | 157 | 90 | 2 | 22 | 174 | 11 | 165 | 1.90e-28 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32004.t1 | AT1G28380 | 62.276 | 615 | 211 | 9 | 16 | 620 | 9 | 612 | 0.0 | 765 |
| MS.gene32004.t1 | AT4G24290 | 51.316 | 608 | 270 | 9 | 21 | 619 | 10 | 600 | 0.0 | 603 |
| MS.gene32004.t1 | AT4G24290 | 51.316 | 608 | 270 | 9 | 21 | 619 | 10 | 600 | 0.0 | 603 |
| MS.gene32004.t1 | AT1G14780 | 38.799 | 616 | 343 | 13 | 23 | 611 | 10 | 618 | 2.09e-137 | 415 |
| MS.gene32004.t1 | AT1G29690 | 38.833 | 600 | 290 | 11 | 25 | 611 | 24 | 559 | 1.20e-133 | 403 |
| MS.gene32004.t1 | AT4G24290 | 48.961 | 337 | 153 | 6 | 21 | 348 | 10 | 336 | 3.88e-102 | 314 |
Find 150 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCGACAAAATTAAGCATTT+TGG | 0.150769 | 4.3:-24784519 | None:intergenic |
| TGTGATCTTCTGAAATTTCT+AGG | 0.199569 | 4.3:-24784106 | None:intergenic |
| CACGGTATTAACATAAAGTT+TGG | 0.221178 | 4.3:-24783762 | None:intergenic |
| GTCACTTCAGTTCACTCTTA+TGG | 0.231370 | 4.3:+24783736 | MS.gene32004:CDS |
| CAGAGGATCCACCAGGATAT+TGG | 0.288457 | 4.3:+24784564 | MS.gene32004:CDS |
| ACTAAGAGCCTTGCCTTTGA+TGG | 0.293901 | 4.3:+24782312 | MS.gene32004:CDS |
| CAGCATCTTTCAGAGGTTCC+AGG | 0.308912 | 4.3:+24784080 | MS.gene32004:CDS |
| TTAATAGATAAGGGAACATT+AGG | 0.309328 | 4.3:-24781470 | None:intergenic |
| GGCTATATCAGGAAAATTAA+AGG | 0.311318 | 4.3:+24782965 | MS.gene32004:CDS |
| TGATGAAGTTCTTCTATTGC+AGG | 0.314788 | 4.3:-24783620 | None:intergenic |
| TTCAGGTTCATTGAAAAGTA+TGG | 0.316699 | 4.3:+24782777 | MS.gene32004:intron |
| GTTGAGAGCCACTGGTTATA+AGG | 0.316965 | 4.3:-24783359 | None:intergenic |
| TATTCGACCATAAGTATAAA+AGG | 0.318647 | 4.3:+24783702 | MS.gene32004:CDS |
| TTCAATAAGCAGGTTGATTC+GGG | 0.318983 | 4.3:+24783987 | MS.gene32004:intron |
| CTGAATTCTGTCCCAGGAAA+TGG | 0.330279 | 4.3:+24783437 | MS.gene32004:CDS |
| TTGAACTGCTATTGTCAATA+TGG | 0.345569 | 4.3:-24781409 | None:intergenic |
| AGATGTAGACTCATCCATTC+TGG | 0.349924 | 4.3:-24784231 | None:intergenic |
| GTCCATCCTGCGGCTATATC+AGG | 0.349930 | 4.3:+24782954 | MS.gene32004:CDS |
| TCACTTCAGTTCACTCTTAT+GGG | 0.350996 | 4.3:+24783737 | MS.gene32004:CDS |
| TCAACTTTAGATTGTTTCTC+AGG | 0.363374 | 4.3:-24784446 | None:intergenic |
| TCGTAGTAGCCTCGGCCATC+TGG | 0.365164 | 4.3:-24784149 | None:intergenic |
| CGGCCATCTGGTTCGTCAAT+AGG | 0.368985 | 4.3:-24784137 | None:intergenic |
| TTTCAATAAGCAGGTTGATT+CGG | 0.374923 | 4.3:+24783986 | MS.gene32004:intron |
| TTGGTTTGAGGTTAAGCTAA+TGG | 0.376476 | 4.3:+24784268 | MS.gene32004:CDS |
| TCGGGAAACCGGCCGGTAAC+AGG | 0.378523 | 4.3:+24784005 | MS.gene32004:CDS |
| AGAGGATCCACCAGGATATT+GGG | 0.391881 | 4.3:+24784565 | MS.gene32004:CDS |
| TGTCGAACATGCTATTGAAT+TGG | 0.395267 | 4.3:-24782257 | None:intergenic |
| TAATGTCATATCAATGTCTT+TGG | 0.396557 | 4.3:+24783397 | MS.gene32004:CDS |
| TGGTTTGAGGTTAAGCTAAT+GGG | 0.397784 | 4.3:+24784269 | MS.gene32004:CDS |
| GAATTCAGTAATGAAGTAAT+AGG | 0.399717 | 4.3:-24783422 | None:intergenic |
| TCAACCTCATCTAGAAAATC+AGG | 0.407263 | 4.3:+24784374 | MS.gene32004:CDS |
| GGAGCCCTTGTTGGCACAGG+TGG | 0.415772 | 4.3:-24784497 | None:intergenic |
| TGTGACAAAGGCTTGGTTTG+AGG | 0.418183 | 4.3:+24784256 | MS.gene32004:CDS |
| AGCAGGTTGATTCGGGAAAC+CGG | 0.418321 | 4.3:+24783994 | MS.gene32004:intron |
| AAAGACATTGATATGACATT+AGG | 0.419683 | 4.3:-24783395 | None:intergenic |
| GATGCTGAAGATGGATTGAT+AGG | 0.420463 | 4.3:-24784064 | None:intergenic |
| ATGGTACACACGTAGTTGTT+GGG | 0.421463 | 4.3:+24782796 | MS.gene32004:CDS |
| GGATGATCATACAAAGCTTA+GGG | 0.425872 | 4.3:+24783092 | MS.gene32004:intron |
| CAATATCCTGGTGGATCCTC+TGG | 0.428546 | 4.3:-24784563 | None:intergenic |
| CGTAGTTGTTGGGGTGAAGA+TGG | 0.431793 | 4.3:+24782806 | MS.gene32004:CDS |
| TTATCAGACTTAATAGATAA+GGG | 0.435251 | 4.3:-24781479 | None:intergenic |
| GCTTTCTCAGCTGCTAATTG+AGG | 0.435446 | 4.3:-24781314 | None:intergenic |
| ACTAATAGCTATGGAAATGC+AGG | 0.435774 | 4.3:+24781284 | MS.gene32004:CDS |
| CGACAATGGGCACCGATGTA+TGG | 0.437293 | 4.3:+24783665 | MS.gene32004:CDS |
| TTTATCAGACTTAATAGATA+AGG | 0.439387 | 4.3:-24781480 | None:intergenic |
| TTATCTATTAAGTCTGATAA+AGG | 0.439839 | 4.3:+24781482 | MS.gene32004:CDS |
| TTGGGAGCCCTTGTTGGCAC+AGG | 0.446071 | 4.3:-24784500 | None:intergenic |
| AGGATGATCATACAAAGCTT+AGG | 0.446411 | 4.3:+24783091 | MS.gene32004:intron |
| AACAAACCTCCGTCCCTTGT+TGG | 0.451722 | 4.3:+24783126 | MS.gene32004:CDS |
| AACAGACAACTATCATTGTC+GGG | 0.452760 | 4.3:+24782219 | MS.gene32004:CDS |
| ACTTACTCGGCAAGAGCAGC+GGG | 0.456388 | 4.3:-24782426 | None:intergenic |
| AACAGGTATTCGTTTATACT+TGG | 0.457606 | 4.3:+24784022 | MS.gene32004:CDS |
| GTTAATAATACTAATAGCTA+TGG | 0.462044 | 4.3:+24781275 | MS.gene32004:CDS |
| AACCTCCGTCCCTTGTTGGC+AGG | 0.463366 | 4.3:+24783130 | MS.gene32004:CDS |
| CTTAGTCGAAGCTGCATCCC+TGG | 0.467370 | 4.3:-24782295 | None:intergenic |
| CTGGAGCTATTGTATTGTAC+AGG | 0.472485 | 4.3:-24784212 | None:intergenic |
| GTTTCAGTTGCCACGACAAT+GGG | 0.473101 | 4.3:+24783652 | MS.gene32004:CDS |
| ACGGTATTAACATAAAGTTT+GGG | 0.475299 | 4.3:-24783761 | None:intergenic |
| CTGATAAAGGTGATTGTACC+AGG | 0.476222 | 4.3:+24781495 | MS.gene32004:CDS |
| CATCTATTGTGACAAAGGCT+TGG | 0.480707 | 4.3:+24784249 | MS.gene32004:CDS |
| TATAAACGAATACCTGTTAC+CGG | 0.485389 | 4.3:-24784017 | None:intergenic |
| GAGAAAGCTGTGAGTGTGAT+TGG | 0.485451 | 4.3:+24781329 | MS.gene32004:CDS |
| CCTCTGAAAGATGCTGAAGA+TGG | 0.486026 | 4.3:-24784073 | None:intergenic |
| CGAAAATTCGCAGATCAGAA+TGG | 0.487617 | 4.3:+24784342 | MS.gene32004:CDS |
| CCAGGATATTGGGTTGTCAC+TGG | 0.487824 | 4.3:+24784575 | MS.gene32004:CDS |
| TATGGTACACACGTAGTTGT+TGG | 0.495177 | 4.3:+24782795 | MS.gene32004:CDS |
| CAACAGACAACTATCATTGT+CGG | 0.500149 | 4.3:+24782218 | MS.gene32004:CDS |
| AGAGCCTTGCCTTTGATGGA+TGG | 0.511034 | 4.3:+24782316 | MS.gene32004:CDS |
| GGTATTCGTTTATACTTGGA+AGG | 0.511213 | 4.3:+24784026 | MS.gene32004:CDS |
| AGCAATTTCTGCAGTTCAGT+CGG | 0.511584 | 4.3:-24782879 | None:intergenic |
| GAAAATTCGCAGATCAGAAT+GGG | 0.514979 | 4.3:+24784343 | MS.gene32004:CDS |
| TAGTAAGCATTTCTGTTCGA+AGG | 0.519900 | 4.3:+24783315 | MS.gene32004:CDS |
| TTACAATTGGCCTGCCAACA+AGG | 0.520191 | 4.3:-24783140 | None:intergenic |
| GGTGCAAAGTTATGTGTAGA+AGG | 0.521969 | 4.3:+24784596 | MS.gene32004:CDS |
| AGAGCCACTGGTTATAAGGT+TGG | 0.524639 | 4.3:-24783355 | None:intergenic |
| TAGCTATGGAAATGCAGGGT+TGG | 0.526822 | 4.3:+24781289 | MS.gene32004:CDS |
| GACATTAGGAGACTGTGATA+TGG | 0.529982 | 4.3:-24783381 | None:intergenic |
| TCTCAGGTGAATGCAATCCT+TGG | 0.530122 | 4.3:-24784430 | None:intergenic |
| AGTTTCAGTTGCCACGACAA+TGG | 0.531590 | 4.3:+24783651 | MS.gene32004:CDS |
| GAAAACATGCTCCACTTCAC+TGG | 0.533461 | 4.3:-24784173 | None:intergenic |
| GTGGTCCACCTGTGCCAACA+AGG | 0.536601 | 4.3:+24784492 | MS.gene32004:CDS |
| AGTAAGCATTTCTGTTCGAA+GGG | 0.537776 | 4.3:+24783316 | MS.gene32004:CDS |
| GACACAAAGGAAATGGTAAG+AGG | 0.538834 | 4.3:+24784539 | MS.gene32004:CDS |
| ATAAACTCGGCAATTTATCA+TGG | 0.539597 | 4.3:+24784470 | MS.gene32004:CDS |
| GATTCTCTGCTTGCAAGTCA+AGG | 0.541130 | 4.3:+24781381 | MS.gene32004:CDS |
| TAATAGATAAGGGAACATTA+GGG | 0.541232 | 4.3:-24781469 | None:intergenic |
| CCATCTTCAGCATCTTTCAG+AGG | 0.545066 | 4.3:+24784073 | MS.gene32004:CDS |
| TTGTCGGGAAAGATTCCATC+CGG | 0.552924 | 4.3:+24782234 | MS.gene32004:CDS |
| AGCATTTCTGTTCGAAGGGG+AGG | 0.555180 | 4.3:+24783320 | MS.gene32004:CDS |
| GGAAGAAGGAATTACCTTCA+CGG | 0.561197 | 4.3:-24783780 | None:intergenic |
| ACAATACAATAGCTCCAGAA+TGG | 0.564872 | 4.3:+24784217 | MS.gene32004:CDS |
| TCTGAAATTTCTAGGACACC+TGG | 0.574524 | 4.3:-24784098 | None:intergenic |
| GTAGTTGTTGGGGTGAAGAT+GGG | 0.574754 | 4.3:+24782807 | MS.gene32004:CDS |
| ATGCTATTGAATTGGCCGGA+TGG | 0.576725 | 4.3:-24782249 | None:intergenic |
| CCAGTGACAACCCAATATCC+TGG | 0.577834 | 4.3:-24784575 | None:intergenic |
| GTGATATGGTTGAGAGCCAC+TGG | 0.578254 | 4.3:-24783367 | None:intergenic |
| TACAATTGGCCTGCCAACAA+GGG | 0.578423 | 4.3:-24783139 | None:intergenic |
| TACTTACTCGGCAAGAGCAG+CGG | 0.582249 | 4.3:-24782427 | None:intergenic |
| AGGTGGCAGAATCTCAATCA+AGG | 0.582915 | 4.3:+24784616 | MS.gene32004:CDS |
| AACGAATACCTGTTACCGGC+CGG | 0.583865 | 4.3:-24784013 | None:intergenic |
| TACTTATGGTCGAATACAAG+AGG | 0.584243 | 4.3:-24783695 | None:intergenic |
| TGTTATGAACCATCCATCAA+AGG | 0.584689 | 4.3:-24782325 | None:intergenic |
| GCAGCGGGGTTCCACGAACA+AGG | 0.585598 | 4.3:-24782411 | None:intergenic |
| TCATTACTGAATTCTGTCCC+AGG | 0.588026 | 4.3:+24783431 | MS.gene32004:CDS |
| GAGGACATCGGATCGAAACC+TGG | 0.588872 | 4.3:-24781513 | None:intergenic |
| GGTTGATTCGGGAAACCGGC+CGG | 0.595912 | 4.3:+24783998 | MS.gene32004:intron |
| ATGAGTGCAAAGCTTAGCCA+AGG | 0.599460 | 4.3:+24784413 | MS.gene32004:CDS |
| TGGTCCACCTGTGCCAACAA+GGG | 0.603608 | 4.3:+24784493 | MS.gene32004:CDS |
| GCTACTACGAACCAGTGAAG+TGG | 0.605145 | 4.3:+24784162 | MS.gene32004:CDS |
| GTCTACATCTATTGTGACAA+AGG | 0.606707 | 4.3:+24784244 | MS.gene32004:CDS |
| TACATCGGTGCCCATTGTCG+TGG | 0.607453 | 4.3:-24783662 | None:intergenic |
| ATTGGCCTGCCAACAAGGGA+CGG | 0.613832 | 4.3:-24783135 | None:intergenic |
| CTTAAGACTTGGATACTCAA+CGG | 0.619317 | 4.3:+24784310 | MS.gene32004:CDS |
| CTAATAGCTATGGAAATGCA+GGG | 0.619542 | 4.3:+24781285 | MS.gene32004:CDS |
| CAATGACCTGATTAAAAGTG+AGG | 0.619839 | 4.3:-24781532 | None:intergenic |
| TGAACCATCCATCAAAGGCA+AGG | 0.620613 | 4.3:-24782320 | None:intergenic |
| ATTCGCAGATCAGAATGGGA+TGG | 0.626214 | 4.3:+24784347 | MS.gene32004:CDS |
| AATTTCTGCAGTTCAGTCGG+CGG | 0.627237 | 4.3:-24782876 | None:intergenic |
| AGAGGTCCAGAGGATCCACC+AGG | 0.627751 | 4.3:+24784557 | MS.gene32004:CDS |
| CAAAGCTTAGGGGACTGCAC+AGG | 0.627915 | 4.3:+24783103 | MS.gene32004:CDS |
| TCACTGGTTCGTAGTAGCCT+CGG | 0.627996 | 4.3:-24784157 | None:intergenic |
| ACTTTATGTTAATACCGTGA+AGG | 0.630084 | 4.3:+24783766 | MS.gene32004:CDS |
| GGAAATGGTAAGAGGTCCAG+AGG | 0.631442 | 4.3:+24784547 | MS.gene32004:CDS |
| ACAATAGCAGTTCAAACACA+AGG | 0.633383 | 4.3:+24781417 | MS.gene32004:CDS |
| GATCCTATTGACGAACCAGA+TGG | 0.633830 | 4.3:+24784134 | MS.gene32004:CDS |
| ATTGACGAACCAGATGGCCG+AGG | 0.634066 | 4.3:+24784140 | MS.gene32004:CDS |
| GTTGTTGGGGTGAAGATGGG+AGG | 0.635084 | 4.3:+24782810 | MS.gene32004:CDS |
| ATAAGAGTGAACTGAAGTGA+CGG | 0.635680 | 4.3:-24783734 | None:intergenic |
| GAACATGCTATTGAATTGGC+CGG | 0.637602 | 4.3:-24782253 | None:intergenic |
| ATCTAAAGTTGACATAAACT+CGG | 0.638507 | 4.3:+24784457 | MS.gene32004:CDS |
| TTCCTGATATAGCCGCAGGA+TGG | 0.640932 | 4.3:-24782956 | None:intergenic |
| TTAGGGACAACAACACCAGA+AGG | 0.641365 | 4.3:-24781452 | None:intergenic |
| TGGTACACACGTAGTTGTTG+GGG | 0.641806 | 4.3:+24782797 | MS.gene32004:CDS |
| AACTCGGCAATTTATCATGG+TGG | 0.643726 | 4.3:+24784473 | MS.gene32004:CDS |
| TTAAGCAATTAGCCGACGAG+AGG | 0.648867 | 4.3:+24782901 | MS.gene32004:CDS |
| ATCCGCAGAAAACCTCTCGT+CGG | 0.653656 | 4.3:-24782913 | None:intergenic |
| GCTGTGAGTGTGATTGGTCA+AGG | 0.654752 | 4.3:+24781335 | MS.gene32004:CDS |
| GGCCTGCCAACAAGGGACGG+AGG | 0.659617 | 4.3:-24783132 | None:intergenic |
| GTAAGCATTTCTGTTCGAAG+GGG | 0.662446 | 4.3:+24783317 | MS.gene32004:CDS |
| TATGCCAACCTTATAACCAG+TGG | 0.666189 | 4.3:+24783351 | MS.gene32004:CDS |
| AAGTTCTAATGTCCATCCTG+CGG | 0.667092 | 4.3:+24782944 | MS.gene32004:CDS |
| CTGATTAAAAGTGAGGACAT+CGG | 0.670013 | 4.3:-24781525 | None:intergenic |
| GATGATCATACAAAGCTTAG+GGG | 0.687701 | 4.3:+24783093 | MS.gene32004:CDS |
| TAGTTGTCTGTTGAAATGCT+CGG | 0.693311 | 4.3:-24782208 | None:intergenic |
| GCTGAAGATGGATTGATAGG+TGG | 0.699756 | 4.3:-24784061 | None:intergenic |
| GTGACAACCCAATATCCTGG+TGG | 0.702984 | 4.3:-24784572 | None:intergenic |
| AGAGGCAGATCACCATACAT+CGG | 0.713318 | 4.3:-24783677 | None:intergenic |
| CAATAGCAGTTCAAACACAA+GGG | 0.715832 | 4.3:+24781418 | MS.gene32004:CDS |
| GCAAAGTTATGTGTAGAAGG+TGG | 0.744121 | 4.3:+24784599 | MS.gene32004:CDS |
| CTTACTCGGCAAGAGCAGCG+GGG | 0.766908 | 4.3:-24782425 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTAAACTAAATAAACA+TGG | + | chr4.3:24782751-24782770 | MS.gene32004:intron | 10.0% |
| !! | AAGAAATAAAGATTTAAGTA+AGG | - | chr4.3:24782684-24782703 | None:intergenic | 15.0% |
| !! | AGAAGAAAAAAATAAGTATT+GGG | - | chr4.3:24783532-24783551 | None:intergenic | 15.0% |
| !! | ATGAAACTATTGAATATAAT+TGG | - | chr4.3:24781639-24781658 | None:intergenic | 15.0% |
| !!! | AGTTTAAAATACTATTAACT+TGG | - | chr4.3:24782742-24782761 | None:intergenic | 15.0% |
| !!! | TAATAACTATTTAAGAGTAT+TGG | - | chr4.3:24783811-24783830 | None:intergenic | 15.0% |
| !!! | TATTATAAGAATTTCTTTTC+AGG | + | chr4.3:24783289-24783308 | MS.gene32004:intron | 15.0% |
| !! | ACATATAAGTGATATGAAAA+GGG | + | chr4.3:24782112-24782131 | MS.gene32004:intron | 20.0% |
| !! | AGATCATGAAGATAAAAATA+TGG | + | chr4.3:24783013-24783032 | MS.gene32004:intron | 20.0% |
| !! | CAGAAGAAAAAAATAAGTAT+TGG | - | chr4.3:24783533-24783552 | None:intergenic | 20.0% |
| !! | GTTAATAATACTAATAGCTA+TGG | + | chr4.3:24781275-24781294 | MS.gene32004:CDS | 20.0% |
| !! | TAAAACTATAAGCATTCATT+TGG | + | chr4.3:24782572-24782591 | MS.gene32004:intron | 20.0% |
| !! | TAATTATCATTTATGGTAGA+TGG | + | chr4.3:24782079-24782098 | MS.gene32004:intron | 20.0% |
| !! | TGAAGATAAAAATATGGAAA+TGG | + | chr4.3:24783019-24783038 | MS.gene32004:intron | 20.0% |
| !! | TTATCAGACTTAATAGATAA+GGG | - | chr4.3:24781482-24781501 | None:intergenic | 20.0% |
| !! | TTATCTATTAAGTCTGATAA+AGG | + | chr4.3:24781482-24781501 | MS.gene32004:CDS | 20.0% |
| !! | TTCTTTGTTGAAATATATGT+TGG | + | chr4.3:24783561-24783580 | MS.gene32004:intron | 20.0% |
| !! | TTTATCAGACTTAATAGATA+AGG | - | chr4.3:24781483-24781502 | None:intergenic | 20.0% |
| !!! | ATATGAAAAGGGAAATTTTA+GGG | + | chr4.3:24782123-24782142 | MS.gene32004:intron | 20.0% |
| !!! | ATTATATGATTTTCTAGTTG+CGG | + | chr4.3:24781814-24781833 | MS.gene32004:intron | 20.0% |
| !!! | CAATACTTATTTTTTTCTTC+TGG | + | chr4.3:24783531-24783550 | MS.gene32004:intron | 20.0% |
| !!! | TGAAATTTTTTGTTTGCATT+TGG | + | chr4.3:24781973-24781992 | MS.gene32004:intron | 20.0% |
| ! | AAAAAAAAGGTAAATCAACC+AGG | - | chr4.3:24782059-24782078 | None:intergenic | 25.0% |
| ! | AAAAATGCTAACATCATTCT+TGG | - | chr4.3:24783175-24783194 | None:intergenic | 25.0% |
| ! | AAAGACATTGATATGACATT+AGG | - | chr4.3:24783398-24783417 | None:intergenic | 25.0% |
| ! | ACGGTATTAACATAAAGTTT+GGG | - | chr4.3:24783764-24783783 | None:intergenic | 25.0% |
| ! | ACTATTGATAAAACACAGTT+AGG | - | chr4.3:24781794-24781813 | None:intergenic | 25.0% |
| ! | ATATCTTTGATCATGTTTGT+AGG | + | chr4.3:24783071-24783090 | MS.gene32004:intron | 25.0% |
| ! | CAAAAGTCAAAAGGTTAAAA+AGG | - | chr4.3:24782018-24782037 | None:intergenic | 25.0% |
| ! | CTATTGAATATAATTGGTCA+TGG | - | chr4.3:24781633-24781652 | None:intergenic | 25.0% |
| ! | GAATTCAGTAATGAAGTAAT+AGG | - | chr4.3:24783425-24783444 | None:intergenic | 25.0% |
| ! | GACATATAAGTGATATGAAA+AGG | + | chr4.3:24782111-24782130 | MS.gene32004:intron | 25.0% |
| ! | GCATAACAATAATACTTACT+CGG | - | chr4.3:24782442-24782461 | None:intergenic | 25.0% |
| ! | TAATAGATAAGGGAACATTA+GGG | - | chr4.3:24781472-24781491 | None:intergenic | 25.0% |
| ! | TAATGTCATATCAATGTCTT+TGG | + | chr4.3:24783397-24783416 | MS.gene32004:CDS | 25.0% |
| ! | TAGTGATCAGAATTCAATTA+TGG | - | chr4.3:24781944-24781963 | None:intergenic | 25.0% |
| ! | TATTCGACCATAAGTATAAA+AGG | + | chr4.3:24783702-24783721 | MS.gene32004:CDS | 25.0% |
| ! | TGCAAACAAAAAATTTCAAG+TGG | - | chr4.3:24781971-24781990 | None:intergenic | 25.0% |
| ! | TTAATAGATAAGGGAACATT+AGG | - | chr4.3:24781473-24781492 | None:intergenic | 25.0% |
| ! | TTCAATCAACTAGTTGAAAA+AGG | - | chr4.3:24781685-24781704 | None:intergenic | 25.0% |
| !! | ATAGAAAAGTTATTGACTAG+TGG | + | chr4.3:24781728-24781747 | MS.gene32004:intron | 25.0% |
| !! | ATCTAAAGTTGACATAAACT+CGG | + | chr4.3:24784457-24784476 | MS.gene32004:CDS | 25.0% |
| !! | GATATGAAAAGGGAAATTTT+AGG | + | chr4.3:24782122-24782141 | MS.gene32004:intron | 25.0% |
| !! | TATGAAAAGGGAAATTTTAG+GGG | + | chr4.3:24782124-24782143 | MS.gene32004:intron | 25.0% |
| !! | TCGACAAAATTAAGCATTTT+GGG | - | chr4.3:24784521-24784540 | None:intergenic | 25.0% |
| !! | TTTTAGCAATTATAGAGCAA+GGG | - | chr4.3:24782557-24782576 | None:intergenic | 25.0% |
| !!! | AAAAAATAAGTATTGGGCAA+AGG | - | chr4.3:24783526-24783545 | None:intergenic | 25.0% |
| !!! | AAAGTACTTTTCTTAAGACT+TGG | + | chr4.3:24784299-24784318 | MS.gene32004:CDS | 25.0% |
| !!! | AAATGGATTTTTAAGTCATG+CGG | + | chr4.3:24783454-24783473 | MS.gene32004:CDS | 25.0% |
| !!! | TATTTAAGAGTATTGGAACT+TGG | - | chr4.3:24783804-24783823 | None:intergenic | 25.0% |
| !!! | TTATGGTAGATGGTTTTTTT+TGG | + | chr4.3:24782089-24782108 | MS.gene32004:intron | 25.0% |
| !!! | TTTTTTCACAGTTTCAGAAA+GGG | - | chr4.3:24782385-24782404 | None:intergenic | 25.0% |
| AAATCCTCCTATATGTTGAT+TGG | + | chr4.3:24782715-24782734 | MS.gene32004:intron | 30.0% | |
| AACAGGTATTCGTTTATACT+TGG | + | chr4.3:24784022-24784041 | MS.gene32004:CDS | 30.0% | |
| AAGAAATTGAAGCAGAAGTA+AGG | - | chr4.3:24781567-24781586 | None:intergenic | 30.0% | |
| ACTTGTATAGCAAGAATGTA+AGG | + | chr4.3:24783846-24783865 | MS.gene32004:intron | 30.0% | |
| ACTTTATGTTAATACCGTGA+AGG | + | chr4.3:24783766-24783785 | MS.gene32004:CDS | 30.0% | |
| ATAAACTCGGCAATTTATCA+TGG | + | chr4.3:24784470-24784489 | MS.gene32004:CDS | 30.0% | |
| ATCAGTCTTCAAAAGTCAAA+AGG | - | chr4.3:24782027-24782046 | None:intergenic | 30.0% | |
| CACGGTATTAACATAAAGTT+TGG | - | chr4.3:24783765-24783784 | None:intergenic | 30.0% | |
| CTAAATAAACATGGTTCTTC+AGG | + | chr4.3:24782760-24782779 | MS.gene32004:intron | 30.0% | |
| GACTTAAAAATCCATTTCCT+GGG | - | chr4.3:24783451-24783470 | None:intergenic | 30.0% | |
| GGCTATATCAGGAAAATTAA+AGG | + | chr4.3:24782965-24782984 | MS.gene32004:CDS | 30.0% | |
| TATAAACGAATACCTGTTAC+CGG | - | chr4.3:24784020-24784039 | None:intergenic | 30.0% | |
| TGACTTAAAAATCCATTTCC+TGG | - | chr4.3:24783452-24783471 | None:intergenic | 30.0% | |
| TGTTCGACATGAAAAAATGT+TGG | + | chr4.3:24782271-24782290 | MS.gene32004:CDS | 30.0% | |
| TTACATATTTGTGCTGAACA+TGG | - | chr4.3:24781709-24781728 | None:intergenic | 30.0% | |
| TTGAACTGCTATTGTCAATA+TGG | - | chr4.3:24781412-24781431 | None:intergenic | 30.0% | |
| TTTAGCAATTATAGAGCAAG+GGG | - | chr4.3:24782556-24782575 | None:intergenic | 30.0% | |
| ! | AAATCCTGATTTTCTAGATG+AGG | - | chr4.3:24784381-24784400 | None:intergenic | 30.0% |
| ! | ACGCATTCCTTTTATACTTA+TGG | - | chr4.3:24783712-24783731 | None:intergenic | 30.0% |
| ! | AGTTGATATATTGAGCAAGT+TGG | + | chr4.3:24781761-24781780 | MS.gene32004:intron | 30.0% |
| ! | GTCGACAAAATTAAGCATTT+TGG | - | chr4.3:24784522-24784541 | None:intergenic | 30.0% |
| ! | GTTGAATGTTACTGCTATTT+AGG | - | chr4.3:24782627-24782646 | None:intergenic | 30.0% |
| ! | TAAGTAAGGCTTTTCATACA+AGG | - | chr4.3:24782670-24782689 | None:intergenic | 30.0% |
| ! | TCAACTTTAGATTGTTTCTC+AGG | - | chr4.3:24784449-24784468 | None:intergenic | 30.0% |
| ! | TTCAGGTTCATTGAAAAGTA+TGG | + | chr4.3:24782777-24782796 | MS.gene32004:intron | 30.0% |
| ! | TTGGAGTGACTTTTTACAAT+TGG | - | chr4.3:24783156-24783175 | None:intergenic | 30.0% |
| !! | GTTTTAGCAATTATAGAGCA+AGG | - | chr4.3:24782558-24782577 | None:intergenic | 30.0% |
| !! | TGTGATCTTCTGAAATTTCT+AGG | - | chr4.3:24784109-24784128 | None:intergenic | 30.0% |
| !! | TTTCAATAAGCAGGTTGATT+CGG | + | chr4.3:24783986-24784005 | MS.gene32004:intron | 30.0% |
| !!! | CTTTTTTCACAGTTTCAGAA+AGG | - | chr4.3:24782386-24782405 | None:intergenic | 30.0% |
| AACAGACAACTATCATTGTC+GGG | + | chr4.3:24782219-24782238 | MS.gene32004:CDS | 35.0% | |
| AAGACTGATCATGTATTACC+TGG | + | chr4.3:24782038-24782057 | MS.gene32004:intron | 35.0% | |
| ACAATACAATAGCTCCAGAA+TGG | + | chr4.3:24784217-24784236 | MS.gene32004:CDS | 35.0% | |
| ACAATAGCAGTTCAAACACA+AGG | + | chr4.3:24781417-24781436 | MS.gene32004:CDS | 35.0% | |
| ACATGAAAAAATGTTGGTCC+AGG | + | chr4.3:24782277-24782296 | MS.gene32004:CDS | 35.0% | |
| ACTAATAGCTATGGAAATGC+AGG | + | chr4.3:24781284-24781303 | MS.gene32004:CDS | 35.0% | |
| ACTTGGTCCAATCAACATAT+AGG | - | chr4.3:24782725-24782744 | None:intergenic | 35.0% | |
| AGAATAGATGCAAAGTGAAC+AGG | - | chr4.3:24783239-24783258 | None:intergenic | 35.0% | |
| AGGATGATCATACAAAGCTT+AGG | + | chr4.3:24783091-24783110 | MS.gene32004:intron | 35.0% | |
| AGTAAGCATTTCTGTTCGAA+GGG | + | chr4.3:24783316-24783335 | MS.gene32004:CDS | 35.0% | |
| ATAAGAGTGAACTGAAGTGA+CGG | - | chr4.3:24783737-24783756 | None:intergenic | 35.0% | |
| ATCAACCTGCTTATTGAAAC+AGG | - | chr4.3:24783985-24784004 | None:intergenic | 35.0% | |
| CAACAGACAACTATCATTGT+CGG | + | chr4.3:24782218-24782237 | MS.gene32004:CDS | 35.0% | |
| CAATAGCAGTTCAAACACAA+GGG | + | chr4.3:24781418-24781437 | MS.gene32004:CDS | 35.0% | |
| CAATGACCTGATTAAAAGTG+AGG | - | chr4.3:24781535-24781554 | None:intergenic | 35.0% | |
| CATGAAAAAATGTTGGTCCA+GGG | + | chr4.3:24782278-24782297 | MS.gene32004:CDS | 35.0% | |
| CTAATAGCTATGGAAATGCA+GGG | + | chr4.3:24781285-24781304 | MS.gene32004:CDS | 35.0% | |
| CTGATTAAAAGTGAGGACAT+CGG | - | chr4.3:24781528-24781547 | None:intergenic | 35.0% | |
| CTTAAGACTTGGATACTCAA+CGG | + | chr4.3:24784310-24784329 | MS.gene32004:CDS | 35.0% | |
| GAAAATTCGCAGATCAGAAT+GGG | + | chr4.3:24784343-24784362 | MS.gene32004:CDS | 35.0% | |
| GAAGAACACACGATTATTGT+AGG | + | chr4.3:24783927-24783946 | MS.gene32004:intron | 35.0% | |
| GACGACTATTAACTAGAAGA+GGG | - | chr4.3:24782469-24782488 | None:intergenic | 35.0% | |
| GATGATCATACAAAGCTTAG+GGG | + | chr4.3:24783093-24783112 | MS.gene32004:CDS | 35.0% | |
| GGATGATCATACAAAGCTTA+GGG | + | chr4.3:24783092-24783111 | MS.gene32004:intron | 35.0% | |
| GGTATTCGTTTATACTTGGA+AGG | + | chr4.3:24784026-24784045 | MS.gene32004:CDS | 35.0% | |
| GTCTACATCTATTGTGACAA+AGG | + | chr4.3:24784244-24784263 | MS.gene32004:CDS | 35.0% | |
| TACTTATGGTCGAATACAAG+AGG | - | chr4.3:24783698-24783717 | None:intergenic | 35.0% | |
| TAGTAAGCATTTCTGTTCGA+AGG | + | chr4.3:24783315-24783334 | MS.gene32004:CDS | 35.0% | |
| TAGTTGTCTGTTGAAATGCT+CGG | - | chr4.3:24782211-24782230 | None:intergenic | 35.0% | |
| TCAACCTCATCTAGAAAATC+AGG | + | chr4.3:24784374-24784393 | MS.gene32004:CDS | 35.0% | |
| TCAACCTGCTTATTGAAACA+GGG | - | chr4.3:24783984-24784003 | None:intergenic | 35.0% | |
| TCACTTCAGTTCACTCTTAT+GGG | + | chr4.3:24783737-24783756 | MS.gene32004:CDS | 35.0% | |
| TCATTAGATACGATTCATCG+TGG | + | chr4.3:24781878-24781897 | MS.gene32004:intron | 35.0% | |
| TGACGACTATTAACTAGAAG+AGG | - | chr4.3:24782470-24782489 | None:intergenic | 35.0% | |
| TGATGAAGTTCTTCTATTGC+AGG | - | chr4.3:24783623-24783642 | None:intergenic | 35.0% | |
| TGTCGAACATGCTATTGAAT+TGG | - | chr4.3:24782260-24782279 | None:intergenic | 35.0% | |
| TGTTATGAACCATCCATCAA+AGG | - | chr4.3:24782328-24782347 | None:intergenic | 35.0% | |
| TTGTAGGAATTAGTTAGCAC+TGG | + | chr4.3:24783943-24783962 | MS.gene32004:intron | 35.0% | |
| ! | GATTTTCTAGATGAGGTTGA+AGG | - | chr4.3:24784374-24784393 | None:intergenic | 35.0% |
| ! | GCTTAATTTTGTCGACACAA+AGG | + | chr4.3:24784526-24784545 | MS.gene32004:CDS | 35.0% |
| ! | TGGTTTGAGGTTAAGCTAAT+GGG | + | chr4.3:24784269-24784288 | MS.gene32004:CDS | 35.0% |
| ! | TTGGTTTGAGGTTAAGCTAA+TGG | + | chr4.3:24784268-24784287 | MS.gene32004:CDS | 35.0% |
| ! | TTTTGTCGACACAAAGGAAA+TGG | + | chr4.3:24784532-24784551 | MS.gene32004:CDS | 35.0% |
| !! | TTCAATAAGCAGGTTGATTC+GGG | + | chr4.3:24783987-24784006 | MS.gene32004:intron | 35.0% |
| AACTCGGCAATTTATCATGG+TGG | + | chr4.3:24784473-24784492 | MS.gene32004:CDS | 40.0% | |
| AAGTTCGACTGTTCGAGTAT+AGG | - | chr4.3:24783270-24783289 | None:intergenic | 40.0% | |
| AGATGTAGACTCATCCATTC+TGG | - | chr4.3:24784234-24784253 | None:intergenic | 40.0% | |
| AGCAATTTCTGCAGTTCAGT+CGG | - | chr4.3:24782882-24782901 | None:intergenic | 40.0% | |
| ATGGTACACACGTAGTTGTT+GGG | + | chr4.3:24782796-24782815 | MS.gene32004:CDS | 40.0% | |
| CAACACCAGAAGGAAAAACA+AGG | - | chr4.3:24781445-24781464 | None:intergenic | 40.0% | |
| CATCTATTGTGACAAAGGCT+TGG | + | chr4.3:24784249-24784268 | MS.gene32004:CDS | 40.0% | |
| CGAAAATTCGCAGATCAGAA+TGG | + | chr4.3:24784342-24784361 | MS.gene32004:CDS | 40.0% | |
| CTGATAAAGGTGATTGTACC+AGG | + | chr4.3:24781495-24781514 | MS.gene32004:CDS | 40.0% | |
| CTGGAGCTATTGTATTGTAC+AGG | - | chr4.3:24784215-24784234 | None:intergenic | 40.0% | |
| GAACATGCTATTGAATTGGC+CGG | - | chr4.3:24782256-24782275 | None:intergenic | 40.0% | |
| GACACAAAGGAAATGGTAAG+AGG | + | chr4.3:24784539-24784558 | MS.gene32004:CDS | 40.0% | |
| GACATTAGGAGACTGTGATA+TGG | - | chr4.3:24783384-24783403 | None:intergenic | 40.0% | |
| GCAAAGTTATGTGTAGAAGG+TGG | + | chr4.3:24784599-24784618 | MS.gene32004:CDS | 40.0% | |
| GGAAGAAGGAATTACCTTCA+CGG | - | chr4.3:24783783-24783802 | None:intergenic | 40.0% | |
| GGTGCAAAGTTATGTGTAGA+AGG | + | chr4.3:24784596-24784615 | MS.gene32004:CDS | 40.0% | |
| GTAAGCATTTCTGTTCGAAG+GGG | + | chr4.3:24783317-24783336 | MS.gene32004:CDS | 40.0% | |
| GTCACTTCAGTTCACTCTTA+TGG | + | chr4.3:24783736-24783755 | MS.gene32004:CDS | 40.0% | |
| TATGCCAACCTTATAACCAG+TGG | + | chr4.3:24783351-24783370 | MS.gene32004:CDS | 40.0% | |
| TATGGTACACACGTAGTTGT+TGG | + | chr4.3:24782795-24782814 | MS.gene32004:CDS | 40.0% | |
| TCATTACTGAATTCTGTCCC+AGG | + | chr4.3:24783431-24783450 | MS.gene32004:CDS | 40.0% | |
| TGGTCCAATCAACATATAGG+AGG | - | chr4.3:24782722-24782741 | None:intergenic | 40.0% | |
| ! | AAGTTCTAATGTCCATCCTG+CGG | + | chr4.3:24782944-24782963 | MS.gene32004:CDS | 40.0% |
| ! | AATTTTCCTGATATAGCCGC+AGG | - | chr4.3:24782963-24782982 | None:intergenic | 40.0% |
| ! | AGTTATTGACTAGTGGCAGA+TGG | + | chr4.3:24781735-24781754 | MS.gene32004:intron | 40.0% |
| !! | AAGGGAAATTTTAGGGGTGA+TGG | + | chr4.3:24782130-24782149 | MS.gene32004:intron | 40.0% |
| !! | AGGGAAATTTTAGGGGTGAT+GGG | + | chr4.3:24782131-24782150 | MS.gene32004:intron | 40.0% |
| !! | CGATGTCCTCACTTTTAATC+AGG | + | chr4.3:24781526-24781545 | MS.gene32004:CDS | 40.0% |
| !! | GAGTATTGGAACTTGGAAGA+AGG | - | chr4.3:24783797-24783816 | None:intergenic | 40.0% |
| !! | GATGCTGAAGATGGATTGAT+AGG | - | chr4.3:24784067-24784086 | None:intergenic | 40.0% |
| !! | TCTGAAATTTCTAGGACACC+TGG | - | chr4.3:24784101-24784120 | None:intergenic | 40.0% |
| AATTTCTGCAGTTCAGTCGG+CGG | - | chr4.3:24782879-24782898 | None:intergenic | 45.0% | |
| ACTAAGAGCCTTGCCTTTGA+TGG | + | chr4.3:24782312-24782331 | MS.gene32004:CDS | 45.0% | |
| AGAGGATCCACCAGGATATT+GGG | + | chr4.3:24784565-24784584 | MS.gene32004:CDS | 45.0% | |
| AGAGGCAGATCACCATACAT+CGG | - | chr4.3:24783680-24783699 | None:intergenic | 45.0% | |
| AGGTGGCAGAATCTCAATCA+AGG | + | chr4.3:24784616-24784635 | MS.gene32004:CDS | 45.0% | |
| AGTTTCAGTTGCCACGACAA+TGG | + | chr4.3:24783651-24783670 | MS.gene32004:CDS | 45.0% | |
| ATGAGTGCAAAGCTTAGCCA+AGG | + | chr4.3:24784413-24784432 | MS.gene32004:CDS | 45.0% | |
| ATGCTATTGAATTGGCCGGA+TGG | - | chr4.3:24782252-24782271 | None:intergenic | 45.0% | |
| ATTCGCAGATCAGAATGGGA+TGG | + | chr4.3:24784347-24784366 | MS.gene32004:CDS | 45.0% | |
| CAAAGGAAAACCAAAGTCGC+AGG | - | chr4.3:24783509-24783528 | None:intergenic | 45.0% | |
| CCATCTTCAGCATCTTTCAG+AGG | + | chr4.3:24784073-24784092 | MS.gene32004:CDS | 45.0% | |
| CTGAATTCTGTCCCAGGAAA+TGG | + | chr4.3:24783437-24783456 | MS.gene32004:CDS | 45.0% | |
| GAAAACATGCTCCACTTCAC+TGG | - | chr4.3:24784176-24784195 | None:intergenic | 45.0% | |
| GAGAAAGCTGTGAGTGTGAT+TGG | + | chr4.3:24781329-24781348 | MS.gene32004:CDS | 45.0% | |
| GATCCTATTGACGAACCAGA+TGG | + | chr4.3:24784134-24784153 | MS.gene32004:CDS | 45.0% | |
| GATTCTCTGCTTGCAAGTCA+AGG | + | chr4.3:24781381-24781400 | MS.gene32004:CDS | 45.0% | |
| GCTTTCTCAGCTGCTAATTG+AGG | - | chr4.3:24781317-24781336 | None:intergenic | 45.0% | |
| GTAGTTGTTGGGGTGAAGAT+GGG | + | chr4.3:24782807-24782826 | MS.gene32004:CDS | 45.0% | |
| GTTTCAGTTGCCACGACAAT+GGG | + | chr4.3:24783652-24783671 | MS.gene32004:CDS | 45.0% | |
| TAGCTATGGAAATGCAGGGT+TGG | + | chr4.3:24781289-24781308 | MS.gene32004:CDS | 45.0% | |
| TCGACCCTGTTTCAATAAGC+AGG | + | chr4.3:24783977-24783996 | MS.gene32004:intron | 45.0% | |
| TCTCAGGTGAATGCAATCCT+TGG | - | chr4.3:24784433-24784452 | None:intergenic | 45.0% | |
| TGAACCATCCATCAAAGGCA+AGG | - | chr4.3:24782323-24782342 | None:intergenic | 45.0% | |
| TGGTAATACCACGCACTAGA+TGG | - | chr4.3:24781924-24781943 | None:intergenic | 45.0% | |
| TGGTACACACGTAGTTGTTG+GGG | + | chr4.3:24782797-24782816 | MS.gene32004:CDS | 45.0% | |
| TGTTAGATCCATCTAGTGCG+TGG | + | chr4.3:24781913-24781932 | MS.gene32004:intron | 45.0% | |
| TTAAGCAATTAGCCGACGAG+AGG | + | chr4.3:24782901-24782920 | MS.gene32004:CDS | 45.0% | |
| TTAGGGACAACAACACCAGA+AGG | - | chr4.3:24781455-24781474 | None:intergenic | 45.0% | |
| TTGTCGGGAAAGATTCCATC+CGG | + | chr4.3:24782234-24782253 | MS.gene32004:CDS | 45.0% | |
| ! | AAAAAGACGTGCCTTGTTCG+TGG | + | chr4.3:24782400-24782419 | MS.gene32004:CDS | 45.0% |
| ! | AGAGCCACTGGTTATAAGGT+TGG | - | chr4.3:24783358-24783377 | None:intergenic | 45.0% |
| ! | CCTCTGAAAGATGCTGAAGA+TGG | - | chr4.3:24784076-24784095 | None:intergenic | 45.0% |
| ! | GTTGAGAGCCACTGGTTATA+AGG | - | chr4.3:24783362-24783381 | None:intergenic | 45.0% |
| ! | TACAATTGGCCTGCCAACAA+GGG | - | chr4.3:24783142-24783161 | None:intergenic | 45.0% |
| ! | TGTGACAAAGGCTTGGTTTG+AGG | + | chr4.3:24784256-24784275 | MS.gene32004:CDS | 45.0% |
| ! | TTACAATTGGCCTGCCAACA+AGG | - | chr4.3:24783143-24783162 | None:intergenic | 45.0% |
| !! | GCTGAAGATGGATTGATAGG+TGG | - | chr4.3:24784064-24784083 | None:intergenic | 45.0% |
| !!! | AGGGACCTTGTTTTTCCTTC+TGG | + | chr4.3:24781437-24781456 | MS.gene32004:CDS | 45.0% |
| !!! | ATTTTAGGGGTGATGGGATG+TGG | + | chr4.3:24782137-24782156 | MS.gene32004:intron | 45.0% |
| !! | TAAATGATAATTAAAAAAAA+AGG | - | chr4.3:24782072-24782091 | None:intergenic | 5.0% |
| !!! | TTTTTTTTAATTATCATTTA+TGG | + | chr4.3:24782072-24782091 | MS.gene32004:intron | 5.0% |
| AACAAACCTCCGTCCCTTGT+TGG | + | chr4.3:24783126-24783145 | MS.gene32004:CDS | 50.0% | |
| AACGAATACCTGTTACCGGC+CGG | - | chr4.3:24784016-24784035 | None:intergenic | 50.0% | |
| AGAGCCTTGCCTTTGATGGA+TGG | + | chr4.3:24782316-24782335 | MS.gene32004:CDS | 50.0% | |
| AGCATTTCTGTTCGAAGGGG+AGG | + | chr4.3:24783320-24783339 | MS.gene32004:CDS | 50.0% | |
| ATCCGCAGAAAACCTCTCGT+CGG | - | chr4.3:24782916-24782935 | None:intergenic | 50.0% | |
| CAGAGGATCCACCAGGATAT+TGG | + | chr4.3:24784564-24784583 | MS.gene32004:CDS | 50.0% | |
| CAGCATCTTTCAGAGGTTCC+AGG | + | chr4.3:24784080-24784099 | MS.gene32004:CDS | 50.0% | |
| CCAGTGACAACCCAATATCC+TGG | - | chr4.3:24784578-24784597 | None:intergenic | 50.0% | |
| CGTAGTTGTTGGGGTGAAGA+TGG | + | chr4.3:24782806-24782825 | MS.gene32004:CDS | 50.0% | |
| GCTACTACGAACCAGTGAAG+TGG | + | chr4.3:24784162-24784181 | MS.gene32004:CDS | 50.0% | |
| GGAAATGGTAAGAGGTCCAG+AGG | + | chr4.3:24784547-24784566 | MS.gene32004:CDS | 50.0% | |
| GTGACAACCCAATATCCTGG+TGG | - | chr4.3:24784575-24784594 | None:intergenic | 50.0% | |
| GTGATATGGTTGAGAGCCAC+TGG | - | chr4.3:24783370-24783389 | None:intergenic | 50.0% | |
| TACTTACTCGGCAAGAGCAG+CGG | - | chr4.3:24782430-24782449 | None:intergenic | 50.0% | |
| TGAGTAGACACCTGCGACTT+TGG | + | chr4.3:24783496-24783515 | MS.gene32004:intron | 50.0% | |
| TTCCTGATATAGCCGCAGGA+TGG | - | chr4.3:24782959-24782978 | None:intergenic | 50.0% | |
| ! | CAATATCCTGGTGGATCCTC+TGG | - | chr4.3:24784566-24784585 | None:intergenic | 50.0% |
| ! | CCAGGATATTGGGTTGTCAC+TGG | + | chr4.3:24784575-24784594 | MS.gene32004:CDS | 50.0% |
| ! | GCTGTGAGTGTGATTGGTCA+AGG | + | chr4.3:24781335-24781354 | MS.gene32004:CDS | 50.0% |
| !! | AGCAGGTTGATTCGGGAAAC+CGG | + | chr4.3:24783994-24784013 | MS.gene32004:intron | 50.0% |
| !! | AGCATTTTGGGAGCCCTTGT+TGG | - | chr4.3:24784509-24784528 | None:intergenic | 50.0% |
| !! | TCACTGGTTCGTAGTAGCCT+CGG | - | chr4.3:24784160-24784179 | None:intergenic | 50.0% |
| ACTTACTCGGCAAGAGCAGC+GGG | - | chr4.3:24782429-24782448 | None:intergenic | 55.0% | |
| ATTGACGAACCAGATGGCCG+AGG | + | chr4.3:24784140-24784159 | MS.gene32004:CDS | 55.0% | |
| CAAAGCTTAGGGGACTGCAC+AGG | + | chr4.3:24783103-24783122 | MS.gene32004:CDS | 55.0% | |
| CTTAGTCGAAGCTGCATCCC+TGG | - | chr4.3:24782298-24782317 | None:intergenic | 55.0% | |
| GAGGACATCGGATCGAAACC+TGG | - | chr4.3:24781516-24781535 | None:intergenic | 55.0% | |
| GTCCATCCTGCGGCTATATC+AGG | + | chr4.3:24782954-24782973 | MS.gene32004:CDS | 55.0% | |
| GTTGTTGGGGTGAAGATGGG+AGG | + | chr4.3:24782810-24782829 | MS.gene32004:CDS | 55.0% | |
| TGGTCCACCTGTGCCAACAA+GGG | + | chr4.3:24784493-24784512 | MS.gene32004:CDS | 55.0% | |
| ! | AGCCGACGAGAGGTTTTCTG+CGG | + | chr4.3:24782911-24782930 | MS.gene32004:CDS | 55.0% |
| ! | ATTGGCCTGCCAACAAGGGA+CGG | - | chr4.3:24783138-24783157 | None:intergenic | 55.0% |
| ! | CGGCCATCTGGTTCGTCAAT+AGG | - | chr4.3:24784140-24784159 | None:intergenic | 55.0% |
| ! | TACATCGGTGCCCATTGTCG+TGG | - | chr4.3:24783665-24783684 | None:intergenic | 55.0% |
| !! | CGACAATGGGCACCGATGTA+TGG | + | chr4.3:24783665-24783684 | MS.gene32004:CDS | 55.0% |
| AACCTCCGTCCCTTGTTGGC+AGG | + | chr4.3:24783130-24783149 | MS.gene32004:CDS | 60.0% | |
| AGAGGTCCAGAGGATCCACC+AGG | + | chr4.3:24784557-24784576 | MS.gene32004:CDS | 60.0% | |
| CTTACTCGGCAAGAGCAGCG+GGG | - | chr4.3:24782428-24782447 | None:intergenic | 60.0% | |
| GTGGTCCACCTGTGCCAACA+AGG | + | chr4.3:24784492-24784511 | MS.gene32004:CDS | 60.0% | |
| TCGTAGTAGCCTCGGCCATC+TGG | - | chr4.3:24784152-24784171 | None:intergenic | 60.0% | |
| TTGGGAGCCCTTGTTGGCAC+AGG | - | chr4.3:24784503-24784522 | None:intergenic | 60.0% | |
| !! | GGTTGATTCGGGAAACCGGC+CGG | + | chr4.3:24783998-24784017 | MS.gene32004:intron | 60.0% |
| GCAGCGGGGTTCCACGAACA+AGG | - | chr4.3:24782414-24782433 | None:intergenic | 65.0% | |
| GGAGCCCTTGTTGGCACAGG+TGG | - | chr4.3:24784500-24784519 | None:intergenic | 65.0% | |
| TCGGGAAACCGGCCGGTAAC+AGG | + | chr4.3:24784005-24784024 | MS.gene32004:CDS | 65.0% | |
| GGCCTGCCAACAAGGGACGG+AGG | - | chr4.3:24783135-24783154 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 24781263 | 24784685 | 24781263 | ID=MS.gene32004 |
| chr4.3 | mRNA | 24781263 | 24784685 | 24781263 | ID=MS.gene32004.t1;Parent=MS.gene32004 |
| chr4.3 | exon | 24781263 | 24781547 | 24781263 | ID=MS.gene32004.t1.exon1;Parent=MS.gene32004.t1 |
| chr4.3 | CDS | 24781263 | 24781547 | 24781263 | ID=cds.MS.gene32004.t1;Parent=MS.gene32004.t1 |
| chr4.3 | exon | 24782204 | 24782442 | 24782204 | ID=MS.gene32004.t1.exon2;Parent=MS.gene32004.t1 |
| chr4.3 | CDS | 24782204 | 24782442 | 24782204 | ID=cds.MS.gene32004.t1;Parent=MS.gene32004.t1 |
| chr4.3 | exon | 24782782 | 24782986 | 24782782 | ID=MS.gene32004.t1.exon3;Parent=MS.gene32004.t1 |
| chr4.3 | CDS | 24782782 | 24782986 | 24782782 | ID=cds.MS.gene32004.t1;Parent=MS.gene32004.t1 |
| chr4.3 | exon | 24783093 | 24783182 | 24783093 | ID=MS.gene32004.t1.exon4;Parent=MS.gene32004.t1 |
| chr4.3 | CDS | 24783093 | 24783182 | 24783093 | ID=cds.MS.gene32004.t1;Parent=MS.gene32004.t1 |
| chr4.3 | exon | 24783311 | 24783494 | 24783311 | ID=MS.gene32004.t1.exon5;Parent=MS.gene32004.t1 |
| chr4.3 | CDS | 24783311 | 24783494 | 24783311 | ID=cds.MS.gene32004.t1;Parent=MS.gene32004.t1 |
| chr4.3 | exon | 24783615 | 24783787 | 24783615 | ID=MS.gene32004.t1.exon6;Parent=MS.gene32004.t1 |
| chr4.3 | CDS | 24783615 | 24783787 | 24783615 | ID=cds.MS.gene32004.t1;Parent=MS.gene32004.t1 |
| chr4.3 | exon | 24783999 | 24784685 | 24783999 | ID=MS.gene32004.t1.exon7;Parent=MS.gene32004.t1 |
| chr4.3 | CDS | 24783999 | 24784685 | 24783999 | ID=cds.MS.gene32004.t1;Parent=MS.gene32004.t1 |
| Gene Sequence |
| Protein sequence |
