Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene95833.t1 | RHN43814.1 | 96.6 | 584 | 19 | 1 | 1 | 583 | 1 | 584 | 0.00E+00 | 1149.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene95833.t1 | Q8L612 | 57.3 | 602 | 225 | 11 | 5 | 576 | 8 | 607 | 3.0e-198 | 693.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene95833.t1 | A0A396GWE6 | 96.6 | 584 | 19 | 1 | 1 | 583 | 1 | 584 | 0.0e+00 | 1149.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049181 | MS.gene95833 | 0.840985 | 6.25E-58 | -1.69E-46 |
MS.gene049182 | MS.gene95833 | 0.808423 | 3.12E-50 | -1.69E-46 |
MS.gene049457 | MS.gene95833 | 0.809977 | 1.45E-50 | -1.69E-46 |
MS.gene050379 | MS.gene95833 | 0.80411 | 2.53E-49 | -1.69E-46 |
MS.gene050526 | MS.gene95833 | 0.804962 | 1.68E-49 | -1.69E-46 |
MS.gene050883 | MS.gene95833 | 0.802981 | 4.33E-49 | -1.69E-46 |
MS.gene051946 | MS.gene95833 | 0.806498 | 7.99E-50 | -1.69E-46 |
MS.gene051959 | MS.gene95833 | 0.858062 | 1.07E-62 | -1.69E-46 |
MS.gene051960 | MS.gene95833 | 0.861665 | 8.75E-64 | -1.69E-46 |
MS.gene052053 | MS.gene95833 | 0.871762 | 5.34E-67 | -1.69E-46 |
MS.gene052089 | MS.gene95833 | 0.802767 | 4.80E-49 | -1.69E-46 |
MS.gene052091 | MS.gene95833 | 0.819898 | 9.12E-53 | -1.69E-46 |
MS.gene052566 | MS.gene95833 | 0.805158 | 1.53E-49 | -1.69E-46 |
MS.gene053826 | MS.gene95833 | 0.826216 | 3.06E-54 | -1.69E-46 |
MS.gene053932 | MS.gene95833 | 0.83024 | 3.28E-55 | -1.69E-46 |
MS.gene055150 | MS.gene95833 | 0.808412 | 3.14E-50 | -1.69E-46 |
MS.gene055549 | MS.gene95833 | 0.847077 | 1.45E-59 | -1.69E-46 |
MS.gene055550 | MS.gene95833 | 0.847434 | 1.16E-59 | -1.69E-46 |
MS.gene055551 | MS.gene95833 | 0.822634 | 2.13E-53 | -1.69E-46 |
MS.gene056311 | MS.gene95833 | 0.813046 | 3.12E-51 | -1.69E-46 |
MS.gene056530 | MS.gene95833 | 0.883889 | 3.06E-71 | -1.69E-46 |
MS.gene056761 | MS.gene95833 | 0.811142 | 8.12E-51 | -1.69E-46 |
MS.gene057001 | MS.gene95833 | 0.859554 | 3.82E-63 | -1.69E-46 |
MS.gene057014 | MS.gene95833 | 0.818202 | 2.22E-52 | -1.69E-46 |
MS.gene057226 | MS.gene95833 | 0.811733 | 6.04E-51 | -1.69E-46 |
MS.gene057472 | MS.gene95833 | 0.813547 | 2.42E-51 | -1.69E-46 |
MS.gene058493 | MS.gene95833 | 0.824628 | 7.28E-54 | -1.69E-46 |
MS.gene058494 | MS.gene95833 | 0.806294 | 8.82E-50 | -1.69E-46 |
MS.gene058628 | MS.gene95833 | 0.866527 | 2.67E-65 | -1.69E-46 |
MS.gene058629 | MS.gene95833 | 0.853288 | 2.64E-61 | -1.69E-46 |
MS.gene058630 | MS.gene95833 | 0.858941 | 5.83E-63 | -1.69E-46 |
MS.gene05884 | MS.gene95833 | 0.879028 | 1.74E-69 | -1.69E-46 |
MS.gene059436 | MS.gene95833 | 0.848976 | 4.35E-60 | -1.69E-46 |
MS.gene059514 | MS.gene95833 | 0.84731 | 1.25E-59 | -1.69E-46 |
MS.gene06012 | MS.gene95833 | 0.85611 | 4.01E-62 | -1.69E-46 |
MS.gene060237 | MS.gene95833 | 0.806403 | 8.37E-50 | -1.69E-46 |
MS.gene06023 | MS.gene95833 | 0.815264 | 1.01E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene004330 | MS.gene95833 | PPI |
MS.gene32004 | MS.gene95833 | PPI |
MS.gene39500 | MS.gene95833 | PPI |
MS.gene002651 | MS.gene95833 | PPI |
MS.gene45398 | MS.gene95833 | PPI |
MS.gene26355 | MS.gene95833 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene95833.t1 | MTR_8g105700 | 90.068 | 584 | 21 | 2 | 1 | 583 | 1 | 548 | 0.0 | 1070 |
MS.gene95833.t1 | MTR_3g084930 | 47.059 | 595 | 287 | 10 | 7 | 576 | 15 | 606 | 0.0 | 540 |
MS.gene95833.t1 | MTR_8g097210 | 46.205 | 606 | 293 | 10 | 1 | 576 | 3 | 605 | 0.0 | 538 |
MS.gene95833.t1 | MTR_2g005730 | 47.449 | 588 | 277 | 10 | 5 | 576 | 11 | 582 | 1.89e-175 | 518 |
MS.gene95833.t1 | MTR_8g095090 | 45.862 | 580 | 293 | 9 | 6 | 576 | 10 | 577 | 6.05e-162 | 483 |
MS.gene95833.t1 | MTR_8g097210 | 45.331 | 514 | 261 | 8 | 80 | 576 | 1 | 511 | 1.56e-150 | 451 |
MS.gene95833.t1 | MTR_4g088500 | 42.393 | 585 | 317 | 8 | 6 | 576 | 22 | 600 | 1.05e-145 | 441 |
MS.gene95833.t1 | MTR_8g095090 | 45.383 | 509 | 251 | 10 | 80 | 576 | 1 | 494 | 4.03e-135 | 410 |
MS.gene95833.t1 | MTR_2g017740 | 40.956 | 586 | 280 | 14 | 9 | 579 | 22 | 556 | 6.11e-125 | 386 |
MS.gene95833.t1 | MTR_8g105630 | 100.000 | 167 | 0 | 0 | 619 | 785 | 1 | 167 | 1.38e-114 | 344 |
MS.gene95833.t1 | MTR_8g095110 | 37.889 | 578 | 315 | 13 | 6 | 576 | 13 | 553 | 2.26e-111 | 351 |
MS.gene95833.t1 | MTR_8g095140 | 37.308 | 587 | 317 | 11 | 6 | 576 | 13 | 564 | 1.04e-109 | 347 |
MS.gene95833.t1 | MTR_8g095150 | 38.153 | 574 | 306 | 12 | 6 | 576 | 13 | 540 | 3.77e-109 | 344 |
MS.gene95833.t1 | MTR_2g005730 | 47.757 | 379 | 176 | 7 | 5 | 370 | 11 | 380 | 4.86e-108 | 338 |
MS.gene95833.t1 | MTR_8g095130 | 38.380 | 469 | 245 | 10 | 113 | 571 | 13 | 447 | 9.00e-89 | 288 |
MS.gene95833.t1 | MTR_8g098410 | 70.455 | 176 | 51 | 1 | 608 | 782 | 56 | 231 | 3.42e-82 | 262 |
MS.gene95833.t1 | MTR_8g098410 | 71.856 | 167 | 46 | 1 | 619 | 784 | 1 | 167 | 1.72e-79 | 253 |
MS.gene95833.t1 | MTR_1g014210 | 66.049 | 162 | 55 | 0 | 623 | 784 | 75 | 236 | 2.20e-71 | 234 |
MS.gene95833.t1 | MTR_4g027860 | 38.150 | 346 | 185 | 6 | 242 | 579 | 72 | 396 | 3.70e-70 | 236 |
MS.gene95833.t1 | MTR_8g098400 | 65.823 | 158 | 54 | 0 | 625 | 782 | 12 | 169 | 5.00e-68 | 222 |
MS.gene95833.t1 | MTR_7g094600 | 61.250 | 160 | 62 | 0 | 623 | 782 | 8 | 167 | 1.43e-65 | 216 |
MS.gene95833.t1 | MTR_8g098400 | 65.563 | 151 | 52 | 0 | 625 | 775 | 12 | 162 | 6.88e-65 | 214 |
MS.gene95833.t1 | MTR_5g010340 | 63.816 | 152 | 54 | 1 | 625 | 775 | 10 | 161 | 4.05e-62 | 207 |
MS.gene95833.t1 | MTR_7g116350 | 31.552 | 580 | 261 | 17 | 6 | 576 | 336 | 788 | 4.09e-62 | 224 |
MS.gene95833.t1 | MTR_1g072570 | 57.233 | 159 | 67 | 1 | 626 | 783 | 11 | 169 | 3.46e-58 | 196 |
MS.gene95833.t1 | MTR_8g098400 | 63.934 | 122 | 44 | 0 | 661 | 782 | 1 | 122 | 3.12e-48 | 166 |
MS.gene95833.t1 | MTR_7g094600 | 60.163 | 123 | 49 | 0 | 660 | 782 | 7 | 129 | 9.56e-48 | 166 |
MS.gene95833.t1 | MTR_8g098410 | 69.298 | 114 | 34 | 1 | 608 | 720 | 56 | 169 | 1.48e-46 | 165 |
MS.gene95833.t1 | MTR_8g098400 | 63.542 | 96 | 35 | 0 | 625 | 720 | 12 | 107 | 5.98e-36 | 132 |
MS.gene95833.t1 | MTR_4g027880 | 39.216 | 153 | 90 | 2 | 9 | 159 | 14 | 165 | 2.01e-26 | 106 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene95833.t1 | AT1G14780 | 57.309 | 602 | 225 | 11 | 5 | 576 | 8 | 607 | 0.0 | 700 |
MS.gene95833.t1 | AT4G24290 | 45.704 | 582 | 293 | 11 | 6 | 576 | 11 | 580 | 2.87e-165 | 491 |
MS.gene95833.t1 | AT4G24290 | 45.704 | 582 | 293 | 11 | 6 | 576 | 11 | 580 | 2.87e-165 | 491 |
MS.gene95833.t1 | AT1G28380 | 42.881 | 590 | 306 | 10 | 6 | 576 | 15 | 592 | 2.57e-145 | 440 |
MS.gene95833.t1 | AT1G29690 | 38.908 | 586 | 299 | 10 | 6 | 583 | 21 | 555 | 4.70e-130 | 399 |
MS.gene95833.t1 | AT2G43350 | 69.101 | 178 | 55 | 0 | 608 | 785 | 29 | 206 | 3.46e-82 | 261 |
MS.gene95833.t1 | AT2G43350 | 69.101 | 178 | 55 | 0 | 608 | 785 | 29 | 206 | 3.46e-82 | 261 |
MS.gene95833.t1 | AT2G31570 | 73.780 | 164 | 43 | 0 | 619 | 782 | 1 | 164 | 6.56e-82 | 259 |
MS.gene95833.t1 | AT4G24290 | 45.253 | 316 | 162 | 7 | 6 | 313 | 11 | 323 | 1.45e-79 | 259 |
MS.gene95833.t1 | AT4G11600 | 69.412 | 170 | 52 | 0 | 613 | 782 | 59 | 228 | 5.30e-79 | 254 |
MS.gene95833.t1 | AT4G31870 | 66.471 | 170 | 57 | 0 | 613 | 782 | 62 | 231 | 2.78e-75 | 244 |
MS.gene95833.t1 | AT2G25080 | 64.198 | 162 | 58 | 0 | 623 | 784 | 75 | 236 | 8.69e-71 | 232 |
MS.gene95833.t1 | AT1G63460 | 60.479 | 167 | 66 | 0 | 619 | 785 | 1 | 167 | 2.76e-69 | 225 |
MS.gene95833.t1 | AT3G63080 | 66.026 | 156 | 53 | 0 | 627 | 782 | 14 | 169 | 2.75e-67 | 220 |
MS.gene95833.t1 | AT2G48150 | 63.354 | 161 | 59 | 0 | 625 | 785 | 10 | 170 | 6.06e-67 | 219 |
MS.gene95833.t1 | AT2G48150 | 64.583 | 144 | 51 | 0 | 642 | 785 | 1 | 144 | 8.02e-60 | 199 |
MS.gene95833.t1 | AT4G31870 | 69.091 | 55 | 17 | 0 | 625 | 679 | 74 | 128 | 2.82e-19 | 86.7 |
Find 188 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGAGAAAATTCCAGATTTC+TGG | 0.083759 | 4.3:-1340195 | None:intergenic |
CCAGGTCATTGGTTGGTTAC+TGG | 0.132677 | 4.3:+1340379 | MS.gene95833:CDS |
CCCATCACCTCTCTTCTTAA+AGG | 0.136687 | 4.3:+1338930 | MS.gene95833:CDS |
CGTTTCTTTGAAGCAATAAA+TGG | 0.146797 | 4.3:+1339962 | MS.gene95833:CDS |
GGGTATTTCAATACAGTATT+TGG | 0.161336 | 4.3:+1335709 | MS.gene95833:CDS |
TCCCCTCTTTACACATATTA+TGG | 0.199778 | 4.3:-1338826 | None:intergenic |
TCGACTTGACATCAGATTTC+AGG | 0.226789 | 4.3:+1335197 | MS.gene95833:CDS |
GATCAGAAAGGAGGAATATT+TGG | 0.230959 | 4.3:+1345463 | MS.gene95833:CDS |
ATCGGTATTTACATAAAGTT+TGG | 0.231358 | 4.3:-1339465 | None:intergenic |
GTCTCTAGACTTTGAAATCT+TGG | 0.241499 | 4.3:+1345060 | MS.gene95833:intron |
GAGCTTTCTGTGCCAGGTTT+TGG | 0.247637 | 4.3:+1335277 | MS.gene95833:CDS |
TCAATTGCATCTGGTTTGTT+AGG | 0.252614 | 4.3:-1338894 | None:intergenic |
AATTGGACAAAGGGTTCTTC+TGG | 0.255985 | 4.3:+1340166 | MS.gene95833:CDS |
CAGGTCATTGGTTGGTTACT+GGG | 0.281666 | 4.3:+1340380 | MS.gene95833:CDS |
GTTGGTTACTGGGGCAAAAT+TGG | 0.294384 | 4.3:+1340390 | MS.gene95833:CDS |
GACCTTGATCCTTATACTTC+TGG | 0.294629 | 4.3:-1344943 | None:intergenic |
TTCAAGCTGTTCCTTCTTCA+TGG | 0.298007 | 4.3:+1335857 | MS.gene95833:CDS |
TCTGGATTGTCCCAGAAATC+TGG | 0.299066 | 4.3:+1340184 | MS.gene95833:CDS |
CCAGCCGCCTTTGATGTCTT+TGG | 0.299845 | 4.3:+1338608 | MS.gene95833:CDS |
TCTGAGGTTATTGTTCTCTA+AGG | 0.301320 | 4.3:+1340117 | MS.gene95833:CDS |
GAAAATCAAACATACCTTAT+CGG | 0.325614 | 4.3:-1339483 | None:intergenic |
CAGTGAAATACAATCCTAAA+TGG | 0.326415 | 4.3:+1340014 | MS.gene95833:CDS |
TTCTTAAAGGTGCTCCTGGC+AGG | 0.337014 | 4.3:+1338943 | MS.gene95833:CDS |
TTAGAAAGAAGAAGTGGATA+TGG | 0.339600 | 4.3:-1335826 | None:intergenic |
CAGAAACTCATCTTCCAAAA+TGG | 0.340181 | 4.3:+1343463 | MS.gene95833:CDS |
TTTCTCACTCTCAATTTAAT+GGG | 0.346071 | 4.3:+1339440 | MS.gene95833:CDS |
TCAGATTCATCGAGAACTTT+GGG | 0.359267 | 4.3:+1338079 | MS.gene95833:intron |
ATTCACTGTGGCTGCTCACT+TGG | 0.359395 | 4.3:-1338857 | None:intergenic |
GTTGACATTAAATGTGATAA+AGG | 0.365745 | 4.3:+1335319 | MS.gene95833:CDS |
ACAAAGTGTTTAGGTATTGA+TGG | 0.367267 | 4.3:+1335769 | MS.gene95833:CDS |
GGCAAAATTGGTGATGGATA+AGG | 0.367412 | 4.3:+1340402 | MS.gene95833:CDS |
TTGGGTTTGATGAGGGTTCA+TGG | 0.369436 | 4.3:+1335728 | MS.gene95833:CDS |
CTGGTTCCTGTCCACGAAAC+TGG | 0.374855 | 4.3:-1345096 | None:intergenic |
TGAGAAAATTCCAGATTTCT+GGG | 0.378202 | 4.3:-1340194 | None:intergenic |
CATTTAGGATTGTATTTCAC+TGG | 0.381293 | 4.3:-1340013 | None:intergenic |
GCAATAAGCACATCAATATC+TGG | 0.384136 | 4.3:+1340217 | MS.gene95833:CDS |
TAATAGATGTTCCACGTGTA+TGG | 0.390541 | 4.3:-1339870 | None:intergenic |
GGTATTTCAATACAGTATTT+GGG | 0.391201 | 4.3:+1335710 | MS.gene95833:CDS |
CCGCAAATTGTTGCGTTCAA+TGG | 0.394225 | 4.3:+1338632 | MS.gene95833:CDS |
GCAAAATTGGTGATGGATAA+GGG | 0.394648 | 4.3:+1340403 | MS.gene95833:CDS |
TAAACTTACATCGAAGATAA+AGG | 0.397739 | 4.3:-1338989 | None:intergenic |
ATCAGATTCATCGAGAACTT+TGG | 0.399107 | 4.3:+1338078 | MS.gene95833:intron |
GCAGCTAACACAAAGTGTTT+AGG | 0.401057 | 4.3:+1335760 | MS.gene95833:CDS |
AGTGAAATCGTAGATGGATT+TGG | 0.407313 | 4.3:-1343498 | None:intergenic |
AAGAATCACTTGGATGATCT+TGG | 0.408794 | 4.3:+1338192 | MS.gene95833:CDS |
AAAAGAGAGCTTTCTGTGCC+AGG | 0.411773 | 4.3:+1335271 | MS.gene95833:CDS |
TGTTCTGTACCAGAAGTATA+AGG | 0.413755 | 4.3:+1344934 | MS.gene95833:CDS |
GGTGTGGTGAGGAGTCTTAA+TGG | 0.416876 | 4.3:+1342764 | MS.gene95833:CDS |
AAGCTAAAATCAATTGCATC+TGG | 0.418424 | 4.3:-1338903 | None:intergenic |
ACTACCAAGGATACAAGCTT+TGG | 0.419053 | 4.3:+1339357 | MS.gene95833:CDS |
GTTAAATCAAATTGGACAAA+GGG | 0.419356 | 4.3:+1340157 | MS.gene95833:CDS |
TCAAGCTGTTCCTTCTTCAT+GGG | 0.432632 | 4.3:+1335858 | MS.gene95833:CDS |
TCGGTATTTACATAAAGTTT+GGG | 0.433680 | 4.3:-1339464 | None:intergenic |
CCATTGAACGCAACAATTTG+CGG | 0.434084 | 4.3:-1338632 | None:intergenic |
TATTATAGGTTGAAGTCAAT+GGG | 0.436019 | 4.3:+1345407 | MS.gene95833:intron |
TTGAAGGAATGAAATGCAAC+AGG | 0.437435 | 4.3:+1339635 | MS.gene95833:CDS |
TTATTATAGGTTGAAGTCAA+TGG | 0.438351 | 4.3:+1345406 | MS.gene95833:intron |
TTTGGGACTCACATCCTTGT+GGG | 0.445545 | 4.3:+1338096 | MS.gene95833:CDS |
CTTGGAGAACAGTTATTTAG+TGG | 0.446466 | 4.3:+1338210 | MS.gene95833:CDS |
CTTGACAGTGAAATCGTAGA+TGG | 0.450016 | 4.3:-1343504 | None:intergenic |
CTTAAAGGTGCTCCTGGCAG+GGG | 0.451189 | 4.3:+1338945 | MS.gene95833:CDS |
GTAATCACCTTATCAAAGAC+TGG | 0.452445 | 4.3:-1345172 | None:intergenic |
GAGAAAGCTCTTAACAGCTT+AGG | 0.455731 | 4.3:+1335166 | MS.gene95833:CDS |
GAGCCCAAAGCTTGTATCCT+TGG | 0.456844 | 4.3:-1339361 | None:intergenic |
CACAACACACTCCAGGTCAT+TGG | 0.460697 | 4.3:+1340368 | MS.gene95833:CDS |
TGAATTTCTTCACTAGATCC+TGG | 0.461518 | 4.3:-1345115 | None:intergenic |
CTACCAAGGATACAAGCTTT+GGG | 0.463104 | 4.3:+1339358 | MS.gene95833:CDS |
TGAATTCCCAGTCTTTGATA+AGG | 0.466937 | 4.3:+1345165 | MS.gene95833:CDS |
GGTATGCGTTTGTTTCTTGA+AGG | 0.467322 | 4.3:+1339619 | MS.gene95833:CDS |
ATCCTTGTGGGTCTTAGCGT+TGG | 0.468179 | 4.3:+1338108 | MS.gene95833:CDS |
GTGTGGTGAGGAGTCTTAAT+GGG | 0.470181 | 4.3:+1342765 | MS.gene95833:CDS |
AAATTGAAGACACAACAATA+TGG | 0.471714 | 4.3:+1339918 | MS.gene95833:CDS |
TCACTGGTGCTGTACATACA+TGG | 0.473147 | 4.3:-1339997 | None:intergenic |
AGATGTCAGAGTTATTCAAT+AGG | 0.474106 | 4.3:+1335656 | MS.gene95833:intron |
TCTCTTCTTAAAGGTGCTCC+TGG | 0.475934 | 4.3:+1338939 | MS.gene95833:CDS |
CTTGTGGGTCTTAGCGTTGG+AGG | 0.478506 | 4.3:+1338111 | MS.gene95833:CDS |
GCTCTTAACAGCTTAGGAAA+AGG | 0.479625 | 4.3:+1335172 | MS.gene95833:CDS |
TGGGTTTGATGAGGGTTCAT+GGG | 0.483693 | 4.3:+1335729 | MS.gene95833:CDS |
AGAGGTAGATCATTGTGAAC+AGG | 0.483745 | 4.3:-1339383 | None:intergenic |
ATAGTAGATATGTTTGTACT+TGG | 0.484397 | 4.3:-1339410 | None:intergenic |
TCTTAAAGGTGCTCCTGGCA+GGG | 0.485486 | 4.3:+1338944 | MS.gene95833:CDS |
TGGAGGGAAAGATTTATTGT+TGG | 0.488064 | 4.3:+1338128 | MS.gene95833:CDS |
AAGTGATTCTTGAGCTCTGA+TGG | 0.490013 | 4.3:-1338180 | None:intergenic |
ACCTTTAAGAAGAGAGGTGA+TGG | 0.490856 | 4.3:-1338931 | None:intergenic |
AACCATAATATGTGTAAAGA+GGG | 0.493169 | 4.3:+1338824 | MS.gene95833:CDS |
AACAAACGCATACCTGTGAT+TGG | 0.494939 | 4.3:-1339610 | None:intergenic |
TGGGAGAGGAATCCCCTGCC+AGG | 0.495127 | 4.3:-1338957 | None:intergenic |
ATGCAACCAGTTTCGTGGAC+AGG | 0.495715 | 4.3:+1345090 | MS.gene95833:CDS |
AAGTGAGCAGCCACAGTGAA+TGG | 0.496362 | 4.3:+1338859 | MS.gene95833:CDS |
TTTCCATGCAACCAGTTTCG+TGG | 0.506265 | 4.3:+1345085 | MS.gene95833:CDS |
AATAGGTAACAGTTGGCAAA+AGG | 0.508024 | 4.3:+1339587 | MS.gene95833:intron |
GTTTCTTTGAAGCAATAAAT+GGG | 0.508479 | 4.3:+1339963 | MS.gene95833:CDS |
AATGTGGCATTTATTGTCAC+AGG | 0.509386 | 4.3:+1340049 | MS.gene95833:CDS |
CAAGACGTGTCTTCCACCTT+GGG | 0.511239 | 4.3:+1338156 | MS.gene95833:CDS |
GTTCACAATGATCTACCTCT+TGG | 0.514768 | 4.3:+1339386 | MS.gene95833:CDS |
TAACCATAATATGTGTAAAG+AGG | 0.516257 | 4.3:+1338823 | MS.gene95833:CDS |
AAAGGTTGATAGCATGGGAG+AGG | 0.517621 | 4.3:-1338971 | None:intergenic |
TGAGGGTACCTTGCAAGTGC+AGG | 0.522200 | 4.3:-1335886 | None:intergenic |
AAGTTCTTAGTAAACAAAGA+AGG | 0.522522 | 4.3:+1345511 | MS.gene95833:CDS |
TTTATCACATTTAATGTCAA+CGG | 0.522581 | 4.3:-1335317 | None:intergenic |
TTCACTGTGGCTGCTCACTT+GGG | 0.522829 | 4.3:-1338856 | None:intergenic |
ACTTTATGTAAATACCGATA+AGG | 0.523405 | 4.3:+1339469 | MS.gene95833:CDS |
ACAGCCAAGGGGTTTGCAAA+TGG | 0.523410 | 4.3:+1342728 | MS.gene95833:CDS |
GAAGATAAAGGTTGATAGCA+TGG | 0.525392 | 4.3:-1338977 | None:intergenic |
TACCAGAAGTATAAGGATCA+AGG | 0.527051 | 4.3:+1344941 | MS.gene95833:CDS |
CTTGAGCTCTGATGGTCCCA+AGG | 0.533591 | 4.3:-1338172 | None:intergenic |
ATTAAATTGAGAGTGAGAAA+AGG | 0.536310 | 4.3:-1339437 | None:intergenic |
TACAGTATTTGGGTTTGATG+AGG | 0.536814 | 4.3:+1335720 | MS.gene95833:CDS |
GATTCGGTTAGCACAGCCAA+GGG | 0.537732 | 4.3:+1342716 | MS.gene95833:CDS |
TAATATGTGTAAAGAGGGGA+GGG | 0.538133 | 4.3:+1338829 | MS.gene95833:CDS |
ACTTGTTTAGAAAGAAGAAG+TGG | 0.538346 | 4.3:-1335832 | None:intergenic |
CAGTTTCGTGGACAGGAACC+AGG | 0.539854 | 4.3:+1345097 | MS.gene95833:CDS |
GCAAGACGTGTCTTCCACCT+TGG | 0.540220 | 4.3:+1338155 | MS.gene95833:CDS |
AATGACCTGGAGTGTGTTGT+GGG | 0.542683 | 4.3:-1340366 | None:intergenic |
TGTTAAATCAAATTGGACAA+AGG | 0.543051 | 4.3:+1340156 | MS.gene95833:CDS |
TACTGGGGCAAAATTGGTGA+TGG | 0.545267 | 4.3:+1340396 | MS.gene95833:CDS |
TTCAGAATGTTGTTTGCACA+AGG | 0.545993 | 4.3:+1345134 | MS.gene95833:CDS |
CAATGACCTGGAGTGTGTTG+TGG | 0.547306 | 4.3:-1340367 | None:intergenic |
CACTCATAATAGGTAACAGT+TGG | 0.547417 | 4.3:+1339580 | MS.gene95833:intron |
TTGGAGAACAGTTATTTAGT+GGG | 0.548703 | 4.3:+1338211 | MS.gene95833:CDS |
ACAGTATTTGGGTTTGATGA+GGG | 0.549123 | 4.3:+1335721 | MS.gene95833:CDS |
AGGTCATTGGTTGGTTACTG+GGG | 0.549188 | 4.3:+1340381 | MS.gene95833:CDS |
CTTAGTAAACAAAGAAGGGA+AGG | 0.552208 | 4.3:+1345516 | MS.gene95833:CDS |
ACTGGTACTGGAGGTCCTGT+TGG | 0.553126 | 4.3:-1340292 | None:intergenic |
ATACAGAGGAAAGGTTCTGC+TGG | 0.554671 | 4.3:+1343698 | MS.gene95833:CDS |
CCAGTAACCAACCAATGACC+TGG | 0.556235 | 4.3:-1340379 | None:intergenic |
GGATTCGGTTAGCACAGCCA+AGG | 0.558402 | 4.3:+1342715 | MS.gene95833:CDS |
CATCTACGATTTCACTGTCA+AGG | 0.560391 | 4.3:+1343505 | MS.gene95833:CDS |
TTGTGGGTCTTAGCGTTGGA+GGG | 0.560685 | 4.3:+1338112 | MS.gene95833:CDS |
AGCTTACTTGGGTGAAGGTG+AGG | 0.562983 | 4.3:-1335369 | None:intergenic |
TATGACAAATCTGACATTGG+TGG | 0.565630 | 4.3:-1339326 | None:intergenic |
GCAAATGGACTCTCTAATTG+TGG | 0.566511 | 4.3:+1342743 | MS.gene95833:CDS |
TGTCCACGAAACTGGTTGCA+TGG | 0.566923 | 4.3:-1345088 | None:intergenic |
GAGTCCATTTGCAAACCCCT+TGG | 0.568091 | 4.3:-1342732 | None:intergenic |
GCAGGAGGATCCCATGAAGA+AGG | 0.570234 | 4.3:-1335868 | None:intergenic |
TCTCTAATTGTGGTGTGGTG+AGG | 0.576185 | 4.3:+1342753 | MS.gene95833:CDS |
GAAATTAAGTTACCATTGTG+AGG | 0.576973 | 4.3:-1343733 | None:intergenic |
AGTTCTTAGTAAACAAAGAA+GGG | 0.577714 | 4.3:+1345512 | MS.gene95833:CDS |
TTGGGTGAAGGTGAGGATGT+CGG | 0.578922 | 4.3:-1335362 | None:intergenic |
AAACAAAGAAGGGAAGGTTG+TGG | 0.578941 | 4.3:+1345522 | MS.gene95833:CDS |
AATAGGAAGAGTTCAATACC+TGG | 0.578976 | 4.3:+1335673 | MS.gene95833:CDS |
CACTGGTGCTGTACATACAT+GGG | 0.579155 | 4.3:-1339996 | None:intergenic |
AAGATAAAGGTTGATAGCAT+GGG | 0.580624 | 4.3:-1338976 | None:intergenic |
CTTTGGGACTCACATCCTTG+TGG | 0.581257 | 4.3:+1338095 | MS.gene95833:CDS |
GGGATCCTCCTGCACTTGCA+AGG | 0.582684 | 4.3:+1335878 | MS.gene95833:CDS |
ATCAGAGCTCAAGAATCACT+TGG | 0.583882 | 4.3:+1338182 | MS.gene95833:CDS |
CCAAAGACATCAAAGGCGGC+TGG | 0.585919 | 4.3:-1338608 | None:intergenic |
TTCAGGCTCAAATTCTGCAA+AGG | 0.587756 | 4.3:+1335214 | MS.gene95833:CDS |
GACACGTCAGAGTTATGTAA+AGG | 0.587773 | 4.3:+1340343 | MS.gene95833:CDS |
AAAGGAGGAATATTTGGAGA+TGG | 0.590133 | 4.3:+1345469 | MS.gene95833:CDS |
AGAACAATAACCTCAGATGT+AGG | 0.590181 | 4.3:-1340111 | None:intergenic |
GTTGGCAAAAGGCCAATCAC+AGG | 0.591185 | 4.3:+1339598 | MS.gene95833:CDS |
AGGAGCACCTTTAAGAAGAG+AGG | 0.595422 | 4.3:-1338937 | None:intergenic |
ATAATATGTGTAAAGAGGGG+AGG | 0.601048 | 4.3:+1338828 | MS.gene95833:CDS |
GAATCAGCTTACTTGGGTGA+AGG | 0.603291 | 4.3:-1335374 | None:intergenic |
ACACACTCCAGGTCATTGGT+TGG | 0.604138 | 4.3:+1340372 | MS.gene95833:CDS |
TGTGTTTGTACTGGTACTGG+AGG | 0.618512 | 4.3:-1340301 | None:intergenic |
AAAGGCCCACAACACACTCC+AGG | 0.619321 | 4.3:+1340361 | MS.gene95833:CDS |
TAATCACCTTATCAAAGACT+GGG | 0.624432 | 4.3:-1345171 | None:intergenic |
TCATACTTTCTTGACTACCA+AGG | 0.625611 | 4.3:+1339344 | MS.gene95833:CDS |
TTGCGGACCAAAGACATCAA+AGG | 0.629078 | 4.3:-1338615 | None:intergenic |
GGGTACCTTGCAAGTGCAGG+AGG | 0.630167 | 4.3:-1335883 | None:intergenic |
TCTGAGTCAATACAGAGGAA+AGG | 0.631545 | 4.3:+1343689 | MS.gene95833:CDS |
ATAGGAAGAGTTCAATACCT+GGG | 0.632447 | 4.3:+1335674 | MS.gene95833:CDS |
TGTCGGATTGATAACGTGTA+CGG | 0.634359 | 4.3:-1335345 | None:intergenic |
ATGTTTGTACTTGGACCAAG+AGG | 0.635000 | 4.3:-1339401 | None:intergenic |
CAAAGAGAGTCCTACATCTG+AGG | 0.641177 | 4.3:+1340101 | MS.gene95833:CDS |
GGTGAGGAGTCTTAATGGGA+AGG | 0.641301 | 4.3:+1342769 | MS.gene95833:CDS |
CTATAATTGCAGGATATCAG+TGG | 0.642189 | 4.3:+1343654 | MS.gene95833:intron |
ACTGTATTGAAATACCCACT+TGG | 0.645812 | 4.3:-1335703 | None:intergenic |
AAGTATGACAAATCTGACAT+TGG | 0.647643 | 4.3:-1339329 | None:intergenic |
TATTTGGAGATGGTATCAAG+TGG | 0.648183 | 4.3:+1345479 | MS.gene95833:CDS |
CCTTTAAGAAGAGAGGTGAT+GGG | 0.648998 | 4.3:-1338930 | None:intergenic |
TACCTGGGAAAATACCAAGT+GGG | 0.650959 | 4.3:+1335689 | MS.gene95833:CDS |
ACCATAATATGTGTAAAGAG+GGG | 0.658232 | 4.3:+1338825 | MS.gene95833:CDS |
CACCGCTCCTCTGAAAATCG+AGG | 0.662646 | 4.3:+1345561 | MS.gene95833:CDS |
TGGACTCTCTAATTGTGGTG+TGG | 0.676770 | 4.3:+1342748 | MS.gene95833:CDS |
CTCCAACGCTAAGACCCACA+AGG | 0.680760 | 4.3:-1338110 | None:intergenic |
AATATGTGTAAAGAGGGGAG+GGG | 0.680772 | 4.3:+1338830 | MS.gene95833:CDS |
GAGCTCTGATGGTCCCAAGG+TGG | 0.684288 | 4.3:-1338169 | None:intergenic |
ATTCGGTTAGCACAGCCAAG+GGG | 0.699973 | 4.3:+1342717 | MS.gene95833:CDS |
CGGACCAAAGACATCAAAGG+CGG | 0.704708 | 4.3:-1338612 | None:intergenic |
AAATAAAGATCAGAAACACA+AGG | 0.714298 | 4.3:+1338254 | MS.gene95833:CDS |
TTGTCAATGTTGCCTCACAA+TGG | 0.714648 | 4.3:+1343721 | MS.gene95833:CDS |
ATACCTGGGAAAATACCAAG+TGG | 0.723262 | 4.3:+1335688 | MS.gene95833:CDS |
ACACAGGTTAGCCATACACG+TGG | 0.725610 | 4.3:+1339859 | MS.gene95833:intron |
CTGTGAGCAGCCATTCACTG+TGG | 0.728210 | 4.3:-1338869 | None:intergenic |
GTGAGTCTGAGTCAATACAG+AGG | 0.737687 | 4.3:+1343684 | MS.gene95833:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 1335148 | 1345709 | 1335148 | ID=MS.gene95833 |
chr4.3 | mRNA | 1335148 | 1345709 | 1335148 | ID=MS.gene95833.t1;Parent=MS.gene95833 |
chr4.3 | exon | 1335148 | 1335384 | 1335148 | ID=MS.gene95833.t1.exon1;Parent=MS.gene95833.t1 |
chr4.3 | CDS | 1335148 | 1335384 | 1335148 | ID=cds.MS.gene95833.t1;Parent=MS.gene95833.t1 |
chr4.3 | exon | 1335658 | 1335899 | 1335658 | ID=MS.gene95833.t1.exon2;Parent=MS.gene95833.t1 |
chr4.3 | CDS | 1335658 | 1335899 | 1335658 | ID=cds.MS.gene95833.t1;Parent=MS.gene95833.t1 |
chr4.3 | exon | 1338083 | 1338275 | 1338083 | ID=MS.gene95833.t1.exon3;Parent=MS.gene95833.t1 |
chr4.3 | CDS | 1338083 | 1338275 | 1338083 | ID=cds.MS.gene95833.t1;Parent=MS.gene95833.t1 |
chr4.3 | exon | 1338605 | 1338679 | 1338605 | ID=MS.gene95833.t1.exon4;Parent=MS.gene95833.t1 |
chr4.3 | CDS | 1338605 | 1338679 | 1338605 | ID=cds.MS.gene95833.t1;Parent=MS.gene95833.t1 |
chr4.3 | exon | 1338819 | 1339002 | 1338819 | ID=MS.gene95833.t1.exon5;Parent=MS.gene95833.t1 |
chr4.3 | CDS | 1338819 | 1339002 | 1338819 | ID=cds.MS.gene95833.t1;Parent=MS.gene95833.t1 |
chr4.3 | exon | 1339321 | 1339490 | 1339321 | ID=MS.gene95833.t1.exon6;Parent=MS.gene95833.t1 |
chr4.3 | CDS | 1339321 | 1339490 | 1339321 | ID=cds.MS.gene95833.t1;Parent=MS.gene95833.t1 |
chr4.3 | exon | 1339592 | 1339656 | 1339592 | ID=MS.gene95833.t1.exon7;Parent=MS.gene95833.t1 |
chr4.3 | CDS | 1339592 | 1339656 | 1339592 | ID=cds.MS.gene95833.t1;Parent=MS.gene95833.t1 |
chr4.3 | exon | 1339865 | 1340424 | 1339865 | ID=MS.gene95833.t1.exon8;Parent=MS.gene95833.t1 |
chr4.3 | CDS | 1339865 | 1340424 | 1339865 | ID=cds.MS.gene95833.t1;Parent=MS.gene95833.t1 |
chr4.3 | exon | 1342714 | 1342800 | 1342714 | ID=MS.gene95833.t1.exon9;Parent=MS.gene95833.t1 |
chr4.3 | CDS | 1342714 | 1342800 | 1342714 | ID=cds.MS.gene95833.t1;Parent=MS.gene95833.t1 |
chr4.3 | exon | 1343441 | 1343526 | 1343441 | ID=MS.gene95833.t1.exon10;Parent=MS.gene95833.t1 |
chr4.3 | CDS | 1343441 | 1343526 | 1343441 | ID=cds.MS.gene95833.t1;Parent=MS.gene95833.t1 |
chr4.3 | exon | 1343666 | 1343742 | 1343666 | ID=MS.gene95833.t1.exon11;Parent=MS.gene95833.t1 |
chr4.3 | CDS | 1343666 | 1343742 | 1343666 | ID=cds.MS.gene95833.t1;Parent=MS.gene95833.t1 |
chr4.3 | exon | 1344901 | 1344962 | 1344901 | ID=MS.gene95833.t1.exon12;Parent=MS.gene95833.t1 |
chr4.3 | CDS | 1344901 | 1344962 | 1344901 | ID=cds.MS.gene95833.t1;Parent=MS.gene95833.t1 |
chr4.3 | exon | 1345068 | 1345186 | 1345068 | ID=MS.gene95833.t1.exon13;Parent=MS.gene95833.t1 |
chr4.3 | CDS | 1345068 | 1345186 | 1345068 | ID=cds.MS.gene95833.t1;Parent=MS.gene95833.t1 |
chr4.3 | exon | 1345415 | 1345582 | 1345415 | ID=MS.gene95833.t1.exon14;Parent=MS.gene95833.t1 |
chr4.3 | CDS | 1345415 | 1345582 | 1345415 | ID=cds.MS.gene95833.t1;Parent=MS.gene95833.t1 |
chr4.3 | exon | 1345677 | 1345709 | 1345677 | ID=MS.gene95833.t1.exon15;Parent=MS.gene95833.t1 |
chr4.3 | CDS | 1345677 | 1345709 | 1345677 | ID=cds.MS.gene95833.t1;Parent=MS.gene95833.t1 |
Gene Sequence |
Protein sequence |