Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015641.t1 | RHN43814.1 | 96.6 | 584 | 19 | 1 | 1 | 583 | 1 | 584 | 0.00E+00 | 1149.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015641.t1 | Q8L612 | 57.3 | 602 | 225 | 11 | 5 | 576 | 8 | 607 | 3.0e-198 | 693.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015641.t1 | A0A396GWE6 | 96.6 | 584 | 19 | 1 | 1 | 583 | 1 | 584 | 0.0e+00 | 1149.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene015641 | MS.gene004330 | PPI |
| MS.gene015641 | MS.gene26355 | PPI |
| MS.gene015641 | MS.gene45398 | PPI |
| MS.gene015641 | MS.gene32004 | PPI |
| MS.gene015641 | MS.gene39500 | PPI |
| MS.gene015641 | MS.gene002651 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015641.t1 | MTR_8g105700 | 90.068 | 584 | 21 | 2 | 1 | 583 | 1 | 548 | 0.0 | 1070 |
| MS.gene015641.t1 | MTR_3g084930 | 47.059 | 595 | 287 | 10 | 7 | 576 | 15 | 606 | 0.0 | 540 |
| MS.gene015641.t1 | MTR_8g097210 | 46.205 | 606 | 293 | 10 | 1 | 576 | 3 | 605 | 0.0 | 538 |
| MS.gene015641.t1 | MTR_2g005730 | 47.449 | 588 | 277 | 10 | 5 | 576 | 11 | 582 | 1.89e-175 | 518 |
| MS.gene015641.t1 | MTR_8g095090 | 45.862 | 580 | 293 | 9 | 6 | 576 | 10 | 577 | 6.05e-162 | 483 |
| MS.gene015641.t1 | MTR_8g097210 | 45.331 | 514 | 261 | 8 | 80 | 576 | 1 | 511 | 1.56e-150 | 451 |
| MS.gene015641.t1 | MTR_4g088500 | 42.393 | 585 | 317 | 8 | 6 | 576 | 22 | 600 | 1.05e-145 | 441 |
| MS.gene015641.t1 | MTR_8g095090 | 45.383 | 509 | 251 | 10 | 80 | 576 | 1 | 494 | 4.03e-135 | 410 |
| MS.gene015641.t1 | MTR_2g017740 | 40.956 | 586 | 280 | 14 | 9 | 579 | 22 | 556 | 6.11e-125 | 386 |
| MS.gene015641.t1 | MTR_8g105630 | 100.000 | 167 | 0 | 0 | 619 | 785 | 1 | 167 | 1.38e-114 | 344 |
| MS.gene015641.t1 | MTR_8g095110 | 37.889 | 578 | 315 | 13 | 6 | 576 | 13 | 553 | 2.26e-111 | 351 |
| MS.gene015641.t1 | MTR_8g095140 | 37.308 | 587 | 317 | 11 | 6 | 576 | 13 | 564 | 1.04e-109 | 347 |
| MS.gene015641.t1 | MTR_8g095150 | 38.153 | 574 | 306 | 12 | 6 | 576 | 13 | 540 | 3.77e-109 | 344 |
| MS.gene015641.t1 | MTR_2g005730 | 47.757 | 379 | 176 | 7 | 5 | 370 | 11 | 380 | 4.86e-108 | 338 |
| MS.gene015641.t1 | MTR_8g095130 | 38.380 | 469 | 245 | 10 | 113 | 571 | 13 | 447 | 9.00e-89 | 288 |
| MS.gene015641.t1 | MTR_8g098410 | 70.455 | 176 | 51 | 1 | 608 | 782 | 56 | 231 | 3.42e-82 | 262 |
| MS.gene015641.t1 | MTR_8g098410 | 71.856 | 167 | 46 | 1 | 619 | 784 | 1 | 167 | 1.72e-79 | 253 |
| MS.gene015641.t1 | MTR_1g014210 | 66.049 | 162 | 55 | 0 | 623 | 784 | 75 | 236 | 2.20e-71 | 234 |
| MS.gene015641.t1 | MTR_4g027860 | 38.150 | 346 | 185 | 6 | 242 | 579 | 72 | 396 | 3.70e-70 | 236 |
| MS.gene015641.t1 | MTR_8g098400 | 65.823 | 158 | 54 | 0 | 625 | 782 | 12 | 169 | 5.00e-68 | 222 |
| MS.gene015641.t1 | MTR_7g094600 | 61.250 | 160 | 62 | 0 | 623 | 782 | 8 | 167 | 1.43e-65 | 216 |
| MS.gene015641.t1 | MTR_8g098400 | 65.563 | 151 | 52 | 0 | 625 | 775 | 12 | 162 | 6.88e-65 | 214 |
| MS.gene015641.t1 | MTR_5g010340 | 63.816 | 152 | 54 | 1 | 625 | 775 | 10 | 161 | 4.05e-62 | 207 |
| MS.gene015641.t1 | MTR_7g116350 | 31.552 | 580 | 261 | 17 | 6 | 576 | 336 | 788 | 4.09e-62 | 224 |
| MS.gene015641.t1 | MTR_1g072570 | 57.233 | 159 | 67 | 1 | 626 | 783 | 11 | 169 | 3.46e-58 | 196 |
| MS.gene015641.t1 | MTR_8g098400 | 63.934 | 122 | 44 | 0 | 661 | 782 | 1 | 122 | 3.12e-48 | 166 |
| MS.gene015641.t1 | MTR_7g094600 | 60.163 | 123 | 49 | 0 | 660 | 782 | 7 | 129 | 9.56e-48 | 166 |
| MS.gene015641.t1 | MTR_8g098410 | 69.298 | 114 | 34 | 1 | 608 | 720 | 56 | 169 | 1.48e-46 | 165 |
| MS.gene015641.t1 | MTR_8g098400 | 63.542 | 96 | 35 | 0 | 625 | 720 | 12 | 107 | 5.98e-36 | 132 |
| MS.gene015641.t1 | MTR_4g027880 | 39.216 | 153 | 90 | 2 | 9 | 159 | 14 | 165 | 2.01e-26 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015641.t1 | AT1G14780 | 57.309 | 602 | 225 | 11 | 5 | 576 | 8 | 607 | 0.0 | 700 |
| MS.gene015641.t1 | AT4G24290 | 45.704 | 582 | 293 | 11 | 6 | 576 | 11 | 580 | 2.87e-165 | 491 |
| MS.gene015641.t1 | AT4G24290 | 45.704 | 582 | 293 | 11 | 6 | 576 | 11 | 580 | 2.87e-165 | 491 |
| MS.gene015641.t1 | AT1G28380 | 42.881 | 590 | 306 | 10 | 6 | 576 | 15 | 592 | 2.57e-145 | 440 |
| MS.gene015641.t1 | AT1G29690 | 38.908 | 586 | 299 | 10 | 6 | 583 | 21 | 555 | 4.70e-130 | 399 |
| MS.gene015641.t1 | AT2G43350 | 69.101 | 178 | 55 | 0 | 608 | 785 | 29 | 206 | 3.46e-82 | 261 |
| MS.gene015641.t1 | AT2G43350 | 69.101 | 178 | 55 | 0 | 608 | 785 | 29 | 206 | 3.46e-82 | 261 |
| MS.gene015641.t1 | AT2G31570 | 73.780 | 164 | 43 | 0 | 619 | 782 | 1 | 164 | 6.56e-82 | 259 |
| MS.gene015641.t1 | AT4G24290 | 45.253 | 316 | 162 | 7 | 6 | 313 | 11 | 323 | 1.45e-79 | 259 |
| MS.gene015641.t1 | AT4G11600 | 69.412 | 170 | 52 | 0 | 613 | 782 | 59 | 228 | 5.30e-79 | 254 |
| MS.gene015641.t1 | AT4G31870 | 66.471 | 170 | 57 | 0 | 613 | 782 | 62 | 231 | 2.78e-75 | 244 |
| MS.gene015641.t1 | AT2G25080 | 64.198 | 162 | 58 | 0 | 623 | 784 | 75 | 236 | 8.69e-71 | 232 |
| MS.gene015641.t1 | AT1G63460 | 60.479 | 167 | 66 | 0 | 619 | 785 | 1 | 167 | 2.76e-69 | 225 |
| MS.gene015641.t1 | AT3G63080 | 66.026 | 156 | 53 | 0 | 627 | 782 | 14 | 169 | 2.75e-67 | 220 |
| MS.gene015641.t1 | AT2G48150 | 63.354 | 161 | 59 | 0 | 625 | 785 | 10 | 170 | 6.06e-67 | 219 |
| MS.gene015641.t1 | AT2G48150 | 64.583 | 144 | 51 | 0 | 642 | 785 | 1 | 144 | 8.02e-60 | 199 |
| MS.gene015641.t1 | AT4G31870 | 69.091 | 55 | 17 | 0 | 625 | 679 | 74 | 128 | 2.82e-19 | 86.7 |
Find 188 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAGAAAATTCCAGATTTC+TGG | 0.083759 | 4.1:-1510130 | None:intergenic |
| CCAGGTCATTGGTTGGTTAC+TGG | 0.132677 | 4.1:+1510314 | MS.gene015641:CDS |
| CCCATCACCTCTCTTCTTAA+AGG | 0.136687 | 4.1:+1508865 | MS.gene015641:CDS |
| CGTTTCTTTGAAGCAATAAA+TGG | 0.146797 | 4.1:+1509897 | MS.gene015641:CDS |
| GGGTATTTCAATACAGTATT+TGG | 0.161336 | 4.1:+1505648 | MS.gene015641:CDS |
| TCCCCTCTTTACACATATTA+TGG | 0.199778 | 4.1:-1508761 | None:intergenic |
| TCGACTTGACATCAGATTTC+AGG | 0.226789 | 4.1:+1505116 | MS.gene015641:CDS |
| GATCAGAAAGGAGGAATATT+TGG | 0.230959 | 4.1:+1515392 | MS.gene015641:CDS |
| ATCGGTATTTACATAAAGTT+TGG | 0.231358 | 4.1:-1509400 | None:intergenic |
| GTCTCTAGACTTTGAAATCT+TGG | 0.241499 | 4.1:+1514990 | MS.gene015641:intron |
| GAGCTTTCTGTGCCAGGTTT+TGG | 0.247637 | 4.1:+1505196 | MS.gene015641:CDS |
| TCAATTGCATCTGGTTTGTT+AGG | 0.252614 | 4.1:-1508829 | None:intergenic |
| AATTGGACAAAGGGTTCTTC+TGG | 0.255985 | 4.1:+1510101 | MS.gene015641:CDS |
| CAGGTCATTGGTTGGTTACT+GGG | 0.281666 | 4.1:+1510315 | MS.gene015641:CDS |
| GTTGGTTACTGGGGCAAAAT+TGG | 0.294384 | 4.1:+1510325 | MS.gene015641:CDS |
| GACCTTGATCCTTATACTTC+TGG | 0.294629 | 4.1:-1514873 | None:intergenic |
| TTCAAGCTGTTCCTTCTTCA+TGG | 0.298007 | 4.1:+1505796 | MS.gene015641:CDS |
| TCTGGATTGTCCCAGAAATC+TGG | 0.299066 | 4.1:+1510119 | MS.gene015641:CDS |
| CCAGCCGCCTTTGATGTCTT+TGG | 0.299845 | 4.1:+1508543 | MS.gene015641:CDS |
| TCTGAGGTTATTGTTCTCTA+AGG | 0.301320 | 4.1:+1510052 | MS.gene015641:CDS |
| GAAAATCAAACATACCTTAT+CGG | 0.325614 | 4.1:-1509418 | None:intergenic |
| CAGTGAAATACAATCCTAAA+TGG | 0.326415 | 4.1:+1509949 | MS.gene015641:CDS |
| TTCTTAAAGGTGCTCCTGGC+AGG | 0.337014 | 4.1:+1508878 | MS.gene015641:CDS |
| TTAGAAAGAAGAAGTGGATA+TGG | 0.339600 | 4.1:-1505765 | None:intergenic |
| CAGAAACTCATCTTCCAAAA+TGG | 0.340181 | 4.1:+1513393 | MS.gene015641:CDS |
| TTTCTCACTCTCAATTTAAT+GGG | 0.346071 | 4.1:+1509375 | MS.gene015641:CDS |
| TCAGATTCATCGAGAACTTT+GGG | 0.359267 | 4.1:+1508018 | MS.gene015641:intron |
| ATTCACTGTGGCTGCTCACT+TGG | 0.359395 | 4.1:-1508792 | None:intergenic |
| GTTGACATTAAATGTGATAA+AGG | 0.365745 | 4.1:+1505238 | MS.gene015641:CDS |
| ACAAAGTGTTTAGGTATTGA+TGG | 0.367267 | 4.1:+1505708 | MS.gene015641:CDS |
| GGCAAAATTGGTGATGGATA+AGG | 0.367412 | 4.1:+1510337 | MS.gene015641:CDS |
| TTGGGTTTGATGAGGGTTCA+TGG | 0.369436 | 4.1:+1505667 | MS.gene015641:CDS |
| CTGGTTCCTGTCCACGAAAC+TGG | 0.374855 | 4.1:-1515026 | None:intergenic |
| TGAGAAAATTCCAGATTTCT+GGG | 0.378202 | 4.1:-1510129 | None:intergenic |
| CATTTAGGATTGTATTTCAC+TGG | 0.381293 | 4.1:-1509948 | None:intergenic |
| GCAATAAGCACATCAATATC+TGG | 0.384136 | 4.1:+1510152 | MS.gene015641:CDS |
| TAATAGATGTTCCACGTGTA+TGG | 0.390541 | 4.1:-1509805 | None:intergenic |
| GGTATTTCAATACAGTATTT+GGG | 0.391201 | 4.1:+1505649 | MS.gene015641:CDS |
| CCGCAAATTGTTGCGTTCAA+TGG | 0.394225 | 4.1:+1508567 | MS.gene015641:CDS |
| GCAAAATTGGTGATGGATAA+GGG | 0.394648 | 4.1:+1510338 | MS.gene015641:CDS |
| TAAACTTACATCGAAGATAA+AGG | 0.397739 | 4.1:-1508924 | None:intergenic |
| ATCAGATTCATCGAGAACTT+TGG | 0.399107 | 4.1:+1508017 | MS.gene015641:intron |
| GCAGCTAACACAAAGTGTTT+AGG | 0.401057 | 4.1:+1505699 | MS.gene015641:CDS |
| AGTGAAATCGTAGATGGATT+TGG | 0.407313 | 4.1:-1513428 | None:intergenic |
| AAGAATCACTTGGATGATCT+TGG | 0.408794 | 4.1:+1508131 | MS.gene015641:CDS |
| AAAAGAGAGCTTTCTGTGCC+AGG | 0.411773 | 4.1:+1505190 | MS.gene015641:CDS |
| TGTTCTGTACCAGAAGTATA+AGG | 0.413755 | 4.1:+1514864 | MS.gene015641:CDS |
| GGTGTGGTGAGGAGTCTTAA+TGG | 0.416876 | 4.1:+1512694 | MS.gene015641:CDS |
| AAGCTAAAATCAATTGCATC+TGG | 0.418424 | 4.1:-1508838 | None:intergenic |
| ACTACCAAGGATACAAGCTT+TGG | 0.419053 | 4.1:+1509292 | MS.gene015641:CDS |
| GTTAAATCAAATTGGACAAA+GGG | 0.419356 | 4.1:+1510092 | MS.gene015641:CDS |
| TCAAGCTGTTCCTTCTTCAT+GGG | 0.432632 | 4.1:+1505797 | MS.gene015641:CDS |
| TCGGTATTTACATAAAGTTT+GGG | 0.433680 | 4.1:-1509399 | None:intergenic |
| CCATTGAACGCAACAATTTG+CGG | 0.434084 | 4.1:-1508567 | None:intergenic |
| TATTATAGGTTGAAGTCAAT+GGG | 0.436019 | 4.1:+1515336 | MS.gene015641:intron |
| TTGAAGGAATGAAATGCAAC+AGG | 0.437435 | 4.1:+1509570 | MS.gene015641:CDS |
| TTATTATAGGTTGAAGTCAA+TGG | 0.438351 | 4.1:+1515335 | MS.gene015641:intron |
| TTTGGGACTCACATCCTTGT+GGG | 0.445545 | 4.1:+1508035 | MS.gene015641:CDS |
| CTTGGAGAACAGTTATTTAG+TGG | 0.446466 | 4.1:+1508149 | MS.gene015641:CDS |
| CTTGACAGTGAAATCGTAGA+TGG | 0.450016 | 4.1:-1513434 | None:intergenic |
| CTTAAAGGTGCTCCTGGCAG+GGG | 0.451189 | 4.1:+1508880 | MS.gene015641:CDS |
| GTAATCACCTTATCAAAGAC+TGG | 0.452445 | 4.1:-1515102 | None:intergenic |
| GAGAAAGCTCTTAACAGCTT+AGG | 0.455731 | 4.1:+1505085 | MS.gene015641:CDS |
| GAGCCCAAAGCTTGTATCCT+TGG | 0.456844 | 4.1:-1509296 | None:intergenic |
| CACAACACACTCCAGGTCAT+TGG | 0.460697 | 4.1:+1510303 | MS.gene015641:CDS |
| TGAATTTCTTCACTAGATCC+TGG | 0.461518 | 4.1:-1515045 | None:intergenic |
| CTACCAAGGATACAAGCTTT+GGG | 0.463104 | 4.1:+1509293 | MS.gene015641:CDS |
| TGAATTCCCAGTCTTTGATA+AGG | 0.466937 | 4.1:+1515095 | MS.gene015641:CDS |
| GGTATGCGTTTGTTTCTTGA+AGG | 0.467322 | 4.1:+1509554 | MS.gene015641:CDS |
| ATCCTTGTGGGTCTTAGCGT+TGG | 0.468179 | 4.1:+1508047 | MS.gene015641:CDS |
| GTGTGGTGAGGAGTCTTAAT+GGG | 0.470181 | 4.1:+1512695 | MS.gene015641:CDS |
| AAATTGAAGACACAACAATA+TGG | 0.471714 | 4.1:+1509853 | MS.gene015641:CDS |
| TCACTGGTGCTGTACATACA+TGG | 0.473147 | 4.1:-1509932 | None:intergenic |
| AGATGTCAGAGTTATTCAAT+AGG | 0.474106 | 4.1:+1505595 | MS.gene015641:intron |
| TCTCTTCTTAAAGGTGCTCC+TGG | 0.475934 | 4.1:+1508874 | MS.gene015641:CDS |
| CTTGTGGGTCTTAGCGTTGG+AGG | 0.478506 | 4.1:+1508050 | MS.gene015641:CDS |
| GCTCTTAACAGCTTAGGAAA+AGG | 0.479625 | 4.1:+1505091 | MS.gene015641:CDS |
| TGGGTTTGATGAGGGTTCAT+GGG | 0.483693 | 4.1:+1505668 | MS.gene015641:CDS |
| AGAGGTAGATCATTGTGAAC+AGG | 0.483745 | 4.1:-1509318 | None:intergenic |
| ATAGTAGATATGTTTGTACT+TGG | 0.484397 | 4.1:-1509345 | None:intergenic |
| TCTTAAAGGTGCTCCTGGCA+GGG | 0.485486 | 4.1:+1508879 | MS.gene015641:CDS |
| TGGAGGGAAAGATTTATTGT+TGG | 0.488064 | 4.1:+1508067 | MS.gene015641:CDS |
| AAGTGATTCTTGAGCTCTGA+TGG | 0.490013 | 4.1:-1508119 | None:intergenic |
| ACCTTTAAGAAGAGAGGTGA+TGG | 0.490856 | 4.1:-1508866 | None:intergenic |
| AACCATAATATGTGTAAAGA+GGG | 0.493169 | 4.1:+1508759 | MS.gene015641:CDS |
| AACAAACGCATACCTGTGAT+TGG | 0.494939 | 4.1:-1509545 | None:intergenic |
| TGGGAGAGGAATCCCCTGCC+AGG | 0.495127 | 4.1:-1508892 | None:intergenic |
| ATGCAACCAGTTTCGTGGAC+AGG | 0.495715 | 4.1:+1515020 | MS.gene015641:CDS |
| AAGTGAGCAGCCACAGTGAA+TGG | 0.496362 | 4.1:+1508794 | MS.gene015641:CDS |
| TTTCCATGCAACCAGTTTCG+TGG | 0.506265 | 4.1:+1515015 | MS.gene015641:CDS |
| AATAGGTAACAGTTGGCAAA+AGG | 0.508024 | 4.1:+1509522 | MS.gene015641:intron |
| GTTTCTTTGAAGCAATAAAT+GGG | 0.508479 | 4.1:+1509898 | MS.gene015641:CDS |
| AATGTGGCATTTATTGTCAC+AGG | 0.509386 | 4.1:+1509984 | MS.gene015641:CDS |
| CAAGACGTGTCTTCCACCTT+GGG | 0.511239 | 4.1:+1508095 | MS.gene015641:CDS |
| GTTCACAATGATCTACCTCT+TGG | 0.514768 | 4.1:+1509321 | MS.gene015641:CDS |
| TAACCATAATATGTGTAAAG+AGG | 0.516257 | 4.1:+1508758 | MS.gene015641:CDS |
| AAAGGTTGATAGCATGGGAG+AGG | 0.517621 | 4.1:-1508906 | None:intergenic |
| TGAGGGTACCTTGCAAGTGC+AGG | 0.522200 | 4.1:-1505825 | None:intergenic |
| AAGTTCTTAGTAAACAAAGA+AGG | 0.522522 | 4.1:+1515440 | MS.gene015641:CDS |
| TTTATCACATTTAATGTCAA+CGG | 0.522581 | 4.1:-1505236 | None:intergenic |
| TTCACTGTGGCTGCTCACTT+GGG | 0.522829 | 4.1:-1508791 | None:intergenic |
| ACTTTATGTAAATACCGATA+AGG | 0.523405 | 4.1:+1509404 | MS.gene015641:CDS |
| ACAGCCAAGGGGTTTGCAAA+TGG | 0.523410 | 4.1:+1512658 | MS.gene015641:CDS |
| GAAGATAAAGGTTGATAGCA+TGG | 0.525392 | 4.1:-1508912 | None:intergenic |
| TACCAGAAGTATAAGGATCA+AGG | 0.527051 | 4.1:+1514871 | MS.gene015641:CDS |
| CTTGAGCTCTGATGGTCCCA+AGG | 0.533591 | 4.1:-1508111 | None:intergenic |
| ATTAAATTGAGAGTGAGAAA+AGG | 0.536310 | 4.1:-1509372 | None:intergenic |
| TACAGTATTTGGGTTTGATG+AGG | 0.536814 | 4.1:+1505659 | MS.gene015641:CDS |
| GATTCGGTTAGCACAGCCAA+GGG | 0.537732 | 4.1:+1512646 | MS.gene015641:CDS |
| TAATATGTGTAAAGAGGGGA+GGG | 0.538133 | 4.1:+1508764 | MS.gene015641:CDS |
| ACTTGTTTAGAAAGAAGAAG+TGG | 0.538346 | 4.1:-1505771 | None:intergenic |
| CAGTTTCGTGGACAGGAACC+AGG | 0.539854 | 4.1:+1515027 | MS.gene015641:CDS |
| GCAAGACGTGTCTTCCACCT+TGG | 0.540220 | 4.1:+1508094 | MS.gene015641:CDS |
| AATGACCTGGAGTGTGTTGT+GGG | 0.542683 | 4.1:-1510301 | None:intergenic |
| TGTTAAATCAAATTGGACAA+AGG | 0.543051 | 4.1:+1510091 | MS.gene015641:CDS |
| TACTGGGGCAAAATTGGTGA+TGG | 0.545267 | 4.1:+1510331 | MS.gene015641:CDS |
| TTCAGAATGTTGTTTGCACA+AGG | 0.545993 | 4.1:+1515064 | MS.gene015641:CDS |
| CAATGACCTGGAGTGTGTTG+TGG | 0.547306 | 4.1:-1510302 | None:intergenic |
| CACTCATAATAGGTAACAGT+TGG | 0.547417 | 4.1:+1509515 | MS.gene015641:intron |
| TTGGAGAACAGTTATTTAGT+GGG | 0.548703 | 4.1:+1508150 | MS.gene015641:CDS |
| ACAGTATTTGGGTTTGATGA+GGG | 0.549123 | 4.1:+1505660 | MS.gene015641:CDS |
| AGGTCATTGGTTGGTTACTG+GGG | 0.549188 | 4.1:+1510316 | MS.gene015641:CDS |
| CTTAGTAAACAAAGAAGGGA+AGG | 0.552208 | 4.1:+1515445 | MS.gene015641:CDS |
| ACTGGTACTGGAGGTCCTGT+TGG | 0.553126 | 4.1:-1510227 | None:intergenic |
| ATACAGAGGAAAGGTTCTGC+TGG | 0.554671 | 4.1:+1513628 | MS.gene015641:CDS |
| CCAGTAACCAACCAATGACC+TGG | 0.556235 | 4.1:-1510314 | None:intergenic |
| GGATTCGGTTAGCACAGCCA+AGG | 0.558402 | 4.1:+1512645 | MS.gene015641:CDS |
| CATCTACGATTTCACTGTCA+AGG | 0.560391 | 4.1:+1513435 | MS.gene015641:CDS |
| TTGTGGGTCTTAGCGTTGGA+GGG | 0.560685 | 4.1:+1508051 | MS.gene015641:CDS |
| AGCTTACTTGGGTGAAGGTG+AGG | 0.562983 | 4.1:-1505288 | None:intergenic |
| TATGACAAATCTGACATTGG+TGG | 0.565630 | 4.1:-1509261 | None:intergenic |
| GCAAATGGACTCTCTAATTG+TGG | 0.566511 | 4.1:+1512673 | MS.gene015641:CDS |
| TGTCCACGAAACTGGTTGCA+TGG | 0.566923 | 4.1:-1515018 | None:intergenic |
| GAGTCCATTTGCAAACCCCT+TGG | 0.568091 | 4.1:-1512662 | None:intergenic |
| GCAGGAGGATCCCATGAAGA+AGG | 0.570234 | 4.1:-1505807 | None:intergenic |
| TCTCTAATTGTGGTGTGGTG+AGG | 0.576185 | 4.1:+1512683 | MS.gene015641:CDS |
| GAAATTAAGTTACCATTGTG+AGG | 0.576973 | 4.1:-1513663 | None:intergenic |
| AGTTCTTAGTAAACAAAGAA+GGG | 0.577714 | 4.1:+1515441 | MS.gene015641:CDS |
| TTGGGTGAAGGTGAGGATGT+CGG | 0.578922 | 4.1:-1505281 | None:intergenic |
| AAACAAAGAAGGGAAGGTTG+TGG | 0.578941 | 4.1:+1515451 | MS.gene015641:CDS |
| AATAGGAAGAGTTCAATACC+TGG | 0.578976 | 4.1:+1505612 | MS.gene015641:CDS |
| CACTGGTGCTGTACATACAT+GGG | 0.579155 | 4.1:-1509931 | None:intergenic |
| AAGATAAAGGTTGATAGCAT+GGG | 0.580624 | 4.1:-1508911 | None:intergenic |
| CTTTGGGACTCACATCCTTG+TGG | 0.581257 | 4.1:+1508034 | MS.gene015641:CDS |
| GGGATCCTCCTGCACTTGCA+AGG | 0.582684 | 4.1:+1505817 | MS.gene015641:CDS |
| ATCAGAGCTCAAGAATCACT+TGG | 0.583882 | 4.1:+1508121 | MS.gene015641:CDS |
| CCAAAGACATCAAAGGCGGC+TGG | 0.585919 | 4.1:-1508543 | None:intergenic |
| TTCAGGCTCAAATTCTGCAA+AGG | 0.587756 | 4.1:+1505133 | MS.gene015641:CDS |
| GACACGTCAGAGTTATGTAA+AGG | 0.587773 | 4.1:+1510278 | MS.gene015641:CDS |
| AAAGGAGGAATATTTGGAGA+TGG | 0.590133 | 4.1:+1515398 | MS.gene015641:CDS |
| AGAACAATAACCTCAGATGT+AGG | 0.590181 | 4.1:-1510046 | None:intergenic |
| GTTGGCAAAAGGCCAATCAC+AGG | 0.591185 | 4.1:+1509533 | MS.gene015641:CDS |
| AGGAGCACCTTTAAGAAGAG+AGG | 0.595422 | 4.1:-1508872 | None:intergenic |
| ATAATATGTGTAAAGAGGGG+AGG | 0.601048 | 4.1:+1508763 | MS.gene015641:CDS |
| GAATCAGCTTACTTGGGTGA+AGG | 0.603291 | 4.1:-1505293 | None:intergenic |
| ACACACTCCAGGTCATTGGT+TGG | 0.604138 | 4.1:+1510307 | MS.gene015641:CDS |
| TGTGTTTGTACTGGTACTGG+AGG | 0.618512 | 4.1:-1510236 | None:intergenic |
| AAAGGCCCACAACACACTCC+AGG | 0.619321 | 4.1:+1510296 | MS.gene015641:CDS |
| TAATCACCTTATCAAAGACT+GGG | 0.624432 | 4.1:-1515101 | None:intergenic |
| TCATACTTTCTTGACTACCA+AGG | 0.625611 | 4.1:+1509279 | MS.gene015641:CDS |
| TTGCGGACCAAAGACATCAA+AGG | 0.629078 | 4.1:-1508550 | None:intergenic |
| GGGTACCTTGCAAGTGCAGG+AGG | 0.630167 | 4.1:-1505822 | None:intergenic |
| TCTGAGTCAATACAGAGGAA+AGG | 0.631545 | 4.1:+1513619 | MS.gene015641:CDS |
| ATAGGAAGAGTTCAATACCT+GGG | 0.632447 | 4.1:+1505613 | MS.gene015641:CDS |
| TGTCGGATTGATAACGTGTA+CGG | 0.634359 | 4.1:-1505264 | None:intergenic |
| ATGTTTGTACTTGGACCAAG+AGG | 0.635000 | 4.1:-1509336 | None:intergenic |
| CAAAGAGAGTCCTACATCTG+AGG | 0.641177 | 4.1:+1510036 | MS.gene015641:CDS |
| GGTGAGGAGTCTTAATGGGA+AGG | 0.641301 | 4.1:+1512699 | MS.gene015641:CDS |
| CTATAATTGCAGGATATCAG+TGG | 0.642189 | 4.1:+1513584 | MS.gene015641:intron |
| ACTGTATTGAAATACCCACT+TGG | 0.645812 | 4.1:-1505642 | None:intergenic |
| AAGTATGACAAATCTGACAT+TGG | 0.647643 | 4.1:-1509264 | None:intergenic |
| TATTTGGAGATGGTATCAAG+TGG | 0.648183 | 4.1:+1515408 | MS.gene015641:CDS |
| CCTTTAAGAAGAGAGGTGAT+GGG | 0.648998 | 4.1:-1508865 | None:intergenic |
| TACCTGGGAAAATACCAAGT+GGG | 0.650959 | 4.1:+1505628 | MS.gene015641:CDS |
| ACCATAATATGTGTAAAGAG+GGG | 0.658232 | 4.1:+1508760 | MS.gene015641:CDS |
| CACCGCTCCTCTGAAAATCG+AGG | 0.662646 | 4.1:+1515490 | MS.gene015641:CDS |
| TGGACTCTCTAATTGTGGTG+TGG | 0.676770 | 4.1:+1512678 | MS.gene015641:CDS |
| CTCCAACGCTAAGACCCACA+AGG | 0.680760 | 4.1:-1508049 | None:intergenic |
| AATATGTGTAAAGAGGGGAG+GGG | 0.680772 | 4.1:+1508765 | MS.gene015641:CDS |
| GAGCTCTGATGGTCCCAAGG+TGG | 0.684288 | 4.1:-1508108 | None:intergenic |
| ATTCGGTTAGCACAGCCAAG+GGG | 0.699973 | 4.1:+1512647 | MS.gene015641:CDS |
| CGGACCAAAGACATCAAAGG+CGG | 0.704708 | 4.1:-1508547 | None:intergenic |
| AAATAAAGATCAGAAACACA+AGG | 0.714298 | 4.1:+1508193 | MS.gene015641:CDS |
| TTGTCAATGTTGCCTCACAA+TGG | 0.714648 | 4.1:+1513651 | MS.gene015641:CDS |
| ATACCTGGGAAAATACCAAG+TGG | 0.723262 | 4.1:+1505627 | MS.gene015641:CDS |
| ACACAGGTTAGCCATACACG+TGG | 0.725610 | 4.1:+1509794 | MS.gene015641:intron |
| CTGTGAGCAGCCATTCACTG+TGG | 0.728210 | 4.1:-1508804 | None:intergenic |
| GTGAGTCTGAGTCAATACAG+AGG | 0.737687 | 4.1:+1513614 | MS.gene015641:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 1505067 | 1515638 | 1505067 | ID=MS.gene015641 |
| chr4.1 | mRNA | 1505067 | 1515638 | 1505067 | ID=MS.gene015641.t1;Parent=MS.gene015641 |
| chr4.1 | exon | 1505067 | 1505303 | 1505067 | ID=MS.gene015641.t1.exon1;Parent=MS.gene015641.t1 |
| chr4.1 | CDS | 1505067 | 1505303 | 1505067 | ID=cds.MS.gene015641.t1;Parent=MS.gene015641.t1 |
| chr4.1 | exon | 1505597 | 1505838 | 1505597 | ID=MS.gene015641.t1.exon2;Parent=MS.gene015641.t1 |
| chr4.1 | CDS | 1505597 | 1505838 | 1505597 | ID=cds.MS.gene015641.t1;Parent=MS.gene015641.t1 |
| chr4.1 | exon | 1508022 | 1508214 | 1508022 | ID=MS.gene015641.t1.exon3;Parent=MS.gene015641.t1 |
| chr4.1 | CDS | 1508022 | 1508214 | 1508022 | ID=cds.MS.gene015641.t1;Parent=MS.gene015641.t1 |
| chr4.1 | exon | 1508540 | 1508614 | 1508540 | ID=MS.gene015641.t1.exon4;Parent=MS.gene015641.t1 |
| chr4.1 | CDS | 1508540 | 1508614 | 1508540 | ID=cds.MS.gene015641.t1;Parent=MS.gene015641.t1 |
| chr4.1 | exon | 1508754 | 1508937 | 1508754 | ID=MS.gene015641.t1.exon5;Parent=MS.gene015641.t1 |
| chr4.1 | CDS | 1508754 | 1508937 | 1508754 | ID=cds.MS.gene015641.t1;Parent=MS.gene015641.t1 |
| chr4.1 | exon | 1509256 | 1509425 | 1509256 | ID=MS.gene015641.t1.exon6;Parent=MS.gene015641.t1 |
| chr4.1 | CDS | 1509256 | 1509425 | 1509256 | ID=cds.MS.gene015641.t1;Parent=MS.gene015641.t1 |
| chr4.1 | exon | 1509527 | 1509591 | 1509527 | ID=MS.gene015641.t1.exon7;Parent=MS.gene015641.t1 |
| chr4.1 | CDS | 1509527 | 1509591 | 1509527 | ID=cds.MS.gene015641.t1;Parent=MS.gene015641.t1 |
| chr4.1 | exon | 1509800 | 1510359 | 1509800 | ID=MS.gene015641.t1.exon8;Parent=MS.gene015641.t1 |
| chr4.1 | CDS | 1509800 | 1510359 | 1509800 | ID=cds.MS.gene015641.t1;Parent=MS.gene015641.t1 |
| chr4.1 | exon | 1512644 | 1512730 | 1512644 | ID=MS.gene015641.t1.exon9;Parent=MS.gene015641.t1 |
| chr4.1 | CDS | 1512644 | 1512730 | 1512644 | ID=cds.MS.gene015641.t1;Parent=MS.gene015641.t1 |
| chr4.1 | exon | 1513371 | 1513456 | 1513371 | ID=MS.gene015641.t1.exon10;Parent=MS.gene015641.t1 |
| chr4.1 | CDS | 1513371 | 1513456 | 1513371 | ID=cds.MS.gene015641.t1;Parent=MS.gene015641.t1 |
| chr4.1 | exon | 1513596 | 1513672 | 1513596 | ID=MS.gene015641.t1.exon11;Parent=MS.gene015641.t1 |
| chr4.1 | CDS | 1513596 | 1513672 | 1513596 | ID=cds.MS.gene015641.t1;Parent=MS.gene015641.t1 |
| chr4.1 | exon | 1514831 | 1514892 | 1514831 | ID=MS.gene015641.t1.exon12;Parent=MS.gene015641.t1 |
| chr4.1 | CDS | 1514831 | 1514892 | 1514831 | ID=cds.MS.gene015641.t1;Parent=MS.gene015641.t1 |
| chr4.1 | exon | 1514998 | 1515116 | 1514998 | ID=MS.gene015641.t1.exon13;Parent=MS.gene015641.t1 |
| chr4.1 | CDS | 1514998 | 1515116 | 1514998 | ID=cds.MS.gene015641.t1;Parent=MS.gene015641.t1 |
| chr4.1 | exon | 1515344 | 1515511 | 1515344 | ID=MS.gene015641.t1.exon14;Parent=MS.gene015641.t1 |
| chr4.1 | CDS | 1515344 | 1515511 | 1515344 | ID=cds.MS.gene015641.t1;Parent=MS.gene015641.t1 |
| chr4.1 | exon | 1515606 | 1515638 | 1515606 | ID=MS.gene015641.t1.exon15;Parent=MS.gene015641.t1 |
| chr4.1 | CDS | 1515606 | 1515638 | 1515606 | ID=cds.MS.gene015641.t1;Parent=MS.gene015641.t1 |
| Gene Sequence |
| Protein sequence |