Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32501.t1 | XP_003616495.1 | 98.2 | 273 | 5 | 0 | 1 | 273 | 1 | 273 | 8.40E-147 | 529.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32501.t1 | Q54TS4 | 34.8 | 198 | 119 | 3 | 77 | 269 | 125 | 317 | 2.0e-24 | 114.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32501.t1 | G7K200 | 98.2 | 273 | 5 | 0 | 1 | 273 | 1 | 273 | 6.0e-147 | 529.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene32501 | MS.gene072464 | PPI |
| MS.gene32501 | MS.gene050864 | PPI |
| MS.gene32501 | MS.gene29330 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32501.t1 | MTR_5g081040 | 98.168 | 273 | 5 | 0 | 1 | 273 | 1 | 273 | 0.0 | 547 |
| MS.gene32501.t1 | MTR_5g081040 | 98.095 | 210 | 4 | 0 | 64 | 273 | 4 | 213 | 3.02e-149 | 416 |
| MS.gene32501.t1 | MTR_3g069150 | 74.725 | 273 | 67 | 2 | 1 | 272 | 1 | 272 | 6.67e-143 | 402 |
| MS.gene32501.t1 | MTR_3g069170 | 74.167 | 240 | 61 | 1 | 1 | 239 | 1 | 240 | 5.51e-126 | 358 |
| MS.gene32501.t1 | MTR_3g069150 | 73.460 | 211 | 55 | 1 | 1 | 210 | 1 | 211 | 7.21e-109 | 315 |
| MS.gene32501.t1 | MTR_7g113620 | 37.945 | 253 | 146 | 4 | 1 | 246 | 2 | 250 | 2.15e-51 | 170 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32501.t1 | AT2G39805 | 61.290 | 279 | 96 | 5 | 1 | 272 | 1 | 274 | 1.59e-119 | 343 |
| MS.gene32501.t1 | AT2G39805 | 61.071 | 280 | 96 | 6 | 1 | 272 | 1 | 275 | 1.45e-117 | 338 |
| MS.gene32501.t1 | AT5G27490 | 38.434 | 281 | 160 | 6 | 1 | 272 | 2 | 278 | 1.29e-58 | 188 |
| MS.gene32501.t1 | AT3G05280 | 36.704 | 267 | 155 | 5 | 1 | 258 | 1 | 262 | 1.15e-52 | 173 |
Find 74 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGTAAGACCTCAAGTTTA+AGG | 0.239012 | 5.1:+62837456 | None:intergenic |
| ATGCTAACCTTATAAGGTTT+TGG | 0.250616 | 5.1:-62837830 | MS.gene32501:CDS |
| GTTCAAATGCTAACCTTATA+AGG | 0.256753 | 5.1:-62837836 | MS.gene32501:CDS |
| AATATTTGCATATTTGCTTC+AGG | 0.285108 | 5.1:+62840085 | None:intergenic |
| ACATGCACCAAAACCTTATA+AGG | 0.322668 | 5.1:+62837823 | None:intergenic |
| ATTGTAGATACGGGCTTATA+TGG | 0.331360 | 5.1:-62838046 | MS.gene32501:intron |
| TACTGAAGAGATGATGAAAA+TGG | 0.347950 | 5.1:+62837785 | None:intergenic |
| AGAAACAGAACGCACAAATC+AGG | 0.354326 | 5.1:+62838364 | None:intergenic |
| GTCTTTGTACTTGCCTCGCT+TGG | 0.388742 | 5.1:-62838008 | MS.gene32501:CDS |
| ACGGCTGCATGGTCTATCTA+TGG | 0.398905 | 5.1:-62837909 | MS.gene32501:CDS |
| CTACTTCTTCCTTCAGTACA+TGG | 0.404025 | 5.1:-62837859 | MS.gene32501:CDS |
| TGGCAGTCTTCATCAAGGTT+TGG | 0.405808 | 5.1:-62837378 | MS.gene32501:CDS |
| CTGAAGAAGTCTCCACCAAC+TGG | 0.422517 | 5.1:+62838403 | None:intergenic |
| CTGTCTCCTCCGTTGGTGGC+GGG | 0.428585 | 5.1:+62840058 | None:intergenic |
| TGATGTTAGCTATATGAATA+CGG | 0.435253 | 5.1:-62837928 | MS.gene32501:CDS |
| TAAGAAGAAGATTCTTCCAT+TGG | 0.436573 | 5.1:+62841099 | None:intergenic |
| AACAACAGCCAACAAACAAC+TGG | 0.436583 | 5.1:-62838513 | MS.gene32501:CDS |
| TGGATCATAACACTCATTAC+TGG | 0.437777 | 5.1:-62837502 | MS.gene32501:CDS |
| ATTGAAGGAACTTATCAATC+TGG | 0.438429 | 5.1:+62838426 | None:intergenic |
| TCTGTCTCCTCCGTTGGTGG+CGG | 0.440294 | 5.1:+62840057 | None:intergenic |
| TCCTCTGTCTCCTCCGTTGG+TGG | 0.443214 | 5.1:+62840054 | None:intergenic |
| TATCTATGGTTATGCAATAG+TGG | 0.444016 | 5.1:-62837895 | MS.gene32501:CDS |
| ATATTTGCATATTTGCTTCA+GGG | 0.448587 | 5.1:+62840086 | None:intergenic |
| GTCTCCACCAACTGGATTGA+AGG | 0.450273 | 5.1:+62838411 | None:intergenic |
| CAAACTGTTGGCACTCCTAC+TGG | 0.454589 | 5.1:-62840019 | MS.gene32501:intron |
| TGACATTTCAGTGGCGATCA+TGG | 0.461393 | 5.1:-62837425 | MS.gene32501:CDS |
| TATCTGCATGTTGTTGCATA+AGG | 0.465432 | 5.1:+62837970 | None:intergenic |
| ATCCACCGCAGAATCTCAAC+TGG | 0.468604 | 5.1:+62837520 | None:intergenic |
| CAACGGAGGAGACAGAGGAC+GGG | 0.471171 | 5.1:-62840050 | MS.gene32501:CDS |
| CCGTCCTCTGTCTCCTCCGT+TGG | 0.479438 | 5.1:+62840051 | None:intergenic |
| CTCCTCCGTTGGTGGCGGGA+GGG | 0.480975 | 5.1:+62840062 | None:intergenic |
| TCTCCTCCGTTGGTGGCGGG+AGG | 0.493774 | 5.1:+62840061 | None:intergenic |
| AACGGAGGAGACAGAGGACG+GGG | 0.501183 | 5.1:-62840049 | MS.gene32501:CDS |
| GCTTTGTTGCCTTAAACTTG+AGG | 0.501740 | 5.1:-62837465 | MS.gene32501:CDS |
| CAAGTTTAAGGCAACAAAGC+TGG | 0.520009 | 5.1:+62837468 | None:intergenic |
| AGGAAGAAGTAGTATGCCAT+TGG | 0.521354 | 5.1:+62837870 | None:intergenic |
| GAACCGAGCAAGTGGCTAGT+AGG | 0.527725 | 5.1:+62841066 | None:intergenic |
| AGTTCCTTCAATCCAGTTGG+TGG | 0.527765 | 5.1:-62838415 | MS.gene32501:CDS |
| CCAACGGAGGAGACAGAGGA+CGG | 0.529195 | 5.1:-62840051 | MS.gene32501:CDS |
| GAAACAGAACGCACAAATCA+GGG | 0.539403 | 5.1:+62838365 | None:intergenic |
| GTTCAGGCTGTCATAGTTGA+AGG | 0.541157 | 5.1:-62840247 | MS.gene32501:intron |
| CTTCCTACTAGCCACTTGCT+CGG | 0.543266 | 5.1:-62841069 | MS.gene32501:CDS |
| TACTTCTTCCTTCAGTACAT+GGG | 0.549442 | 5.1:-62837858 | MS.gene32501:CDS |
| GGAAGAAGTAGTATGCCATT+GGG | 0.550097 | 5.1:+62837871 | None:intergenic |
| ATAAGTTCCTTCAATCCAGT+TGG | 0.554032 | 5.1:-62838418 | MS.gene32501:CDS |
| ATGCAGATAGCGGTACCTCA+TGG | 0.555755 | 5.1:-62837956 | MS.gene32501:CDS |
| GAAGAATCTTCTTCTTACAC+TGG | 0.561265 | 5.1:-62841093 | MS.gene32501:CDS |
| AGGTCTGGCAGTCTTCATCA+AGG | 0.563444 | 5.1:-62837383 | MS.gene32501:CDS |
| CATTTGAACCCATGTACTGA+AGG | 0.576053 | 5.1:+62837850 | None:intergenic |
| CGGGGAGGATATCAAACTGT+TGG | 0.580950 | 5.1:-62840031 | MS.gene32501:CDS |
| GCTATATGAATACGGCTGCA+TGG | 0.592343 | 5.1:-62837920 | MS.gene32501:CDS |
| AACAGCCAACAAACAACTGG+AGG | 0.595623 | 5.1:-62838510 | MS.gene32501:CDS |
| ATATTCCCTCCCGCCACCAA+CGG | 0.595751 | 5.1:-62840067 | MS.gene32501:CDS |
| TATATGGATCTCAACGACAT+TGG | 0.600089 | 5.1:-62838030 | MS.gene32501:CDS |
| TTCCCTCCCGCCACCAACGG+AGG | 0.601298 | 5.1:-62840064 | MS.gene32501:CDS |
| CGGGAACTGAACCGAGCAAG+TGG | 0.601897 | 5.1:+62841058 | None:intergenic |
| GCCACCAACGGAGGAGACAG+AGG | 0.602397 | 5.1:-62840055 | MS.gene32501:CDS |
| GGAGGAGACAGAGGACGGGG+AGG | 0.603333 | 5.1:-62840046 | MS.gene32501:CDS |
| AGAAAAGACTACGAAACATG+TGG | 0.613192 | 5.1:-62840224 | MS.gene32501:CDS |
| AGCCAACAAACAACTGGAGG+GGG | 0.616047 | 5.1:-62838507 | MS.gene32501:CDS |
| ACTCATTACTGGTGTTGCGT+CGG | 0.617025 | 5.1:-62837491 | MS.gene32501:CDS |
| AAGAGATGATGAAAATGGAG+AGG | 0.620309 | 5.1:+62837790 | None:intergenic |
| TAATTCCAGTTGAGATTCTG+CGG | 0.620402 | 5.1:-62837525 | MS.gene32501:CDS |
| AGAGATGATGAAAATGGAGA+GGG | 0.621172 | 5.1:+62837791 | None:intergenic |
| TTATGCAATAGTGGTCCCAA+TGG | 0.635472 | 5.1:-62837886 | MS.gene32501:CDS |
| ACAGCCAACAAACAACTGGA+GGG | 0.635567 | 5.1:-62838509 | MS.gene32501:CDS |
| GAAAAGACTACGAAACATGT+GGG | 0.642609 | 5.1:-62840223 | MS.gene32501:intron |
| CAGCCAACAAACAACTGGAG+GGG | 0.648127 | 5.1:-62838508 | MS.gene32501:CDS |
| AGAAAGCAATGACATTTCAG+TGG | 0.681324 | 5.1:-62837434 | MS.gene32501:CDS |
| TTCCAGTTGAGATTCTGCGG+TGG | 0.686062 | 5.1:-62837522 | MS.gene32501:CDS |
| ATGCAACAACATGCAGATAG+CGG | 0.691113 | 5.1:-62837966 | MS.gene32501:CDS |
| TGTGGCAAGATTTCCAAGCG+AGG | 0.696815 | 5.1:+62837995 | None:intergenic |
| GCTAACATCAAAGCTCCATG+AGG | 0.728832 | 5.1:+62837941 | None:intergenic |
| ATGTTGTTGCATAAGGAATG+TGG | 0.728927 | 5.1:+62837977 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAAAAAAAACTTAC+GGG | + | chr5.1:62837426-62837445 | None:intergenic | 10.0% |
| !!! | AATTTTTTAACATTAAATTG+AGG | - | chr5.1:62837692-62837711 | MS.gene32501:intron | 10.0% |
| !!! | ATTATTATTTCTTACTTTTA+TGG | - | chr5.1:62838307-62838326 | MS.gene32501:intron | 10.0% |
| !!! | TTATTATTTCTTACTTTTAT+GGG | - | chr5.1:62838308-62838327 | MS.gene32501:intron | 10.0% |
| !! | AAAAAAACAATTAGATTAAC+TGG | + | chr5.1:62839766-62839785 | None:intergenic | 15.0% |
| !! | AAGTAAATAAACTATACAAA+TGG | + | chr5.1:62838988-62839007 | None:intergenic | 15.0% |
| !! | ATGAAGTATATACAATTTAA+AGG | + | chr5.1:62838545-62838564 | None:intergenic | 15.0% |
| !! | CAATTAATAATAAGTCATAT+TGG | + | chr5.1:62839420-62839439 | None:intergenic | 15.0% |
| !! | CTATCTAATTTATATTACTT+GGG | - | chr5.1:62840894-62840913 | MS.gene32501:intron | 15.0% |
| !! | TTGAAATTAAATTGTTGAAA+TGG | - | chr5.1:62837544-62837563 | MS.gene32501:intron | 15.0% |
| !!! | TTTTTATGTTATTGTAGATA+CGG | - | chr5.1:62840406-62840425 | MS.gene32501:intron | 15.0% |
| !! | AATAAGTAGATAACAACTTA+TGG | + | chr5.1:62838049-62838068 | None:intergenic | 20.0% |
| !! | ACTCGAAATCTTTAATTAAA+TGG | + | chr5.1:62838607-62838626 | None:intergenic | 20.0% |
| !! | AGTAAAGATTGAAAAGTAAA+TGG | + | chr5.1:62838710-62838729 | None:intergenic | 20.0% |
| !! | ATAGAAATAGCGTATAAATA+AGG | - | chr5.1:62838147-62838166 | MS.gene32501:intron | 20.0% |
| !! | ATGTATCCATAAAAAATAAG+TGG | + | chr5.1:62840274-62840293 | None:intergenic | 20.0% |
| !! | CAAATGACTAAAAATACAAA+TGG | + | chr5.1:62839870-62839889 | None:intergenic | 20.0% |
| !! | GCTATCTAATTTATATTACT+TGG | - | chr5.1:62840893-62840912 | MS.gene32501:intron | 20.0% |
| !! | GTAAAGATTGAAAAGTAAAT+GGG | + | chr5.1:62838709-62838728 | None:intergenic | 20.0% |
| !! | TAATTGTGAAATTGAAGATT+AGG | - | chr5.1:62837592-62837611 | MS.gene32501:intron | 20.0% |
| !! | TATAGTACATGAAAAATCAT+AGG | + | chr5.1:62838671-62838690 | None:intergenic | 20.0% |
| !! | TATATAACAGTTTATATTGC+AGG | + | chr5.1:62839614-62839633 | None:intergenic | 20.0% |
| !!! | ACTAATTTGTTTAATTCTGT+TGG | - | chr5.1:62838170-62838189 | MS.gene32501:intron | 20.0% |
| !!! | ATATATTTGTTGTATTTCCA+TGG | - | chr5.1:62838501-62838520 | MS.gene32501:CDS | 20.0% |
| !!! | TTTTAACATTAAATTGAGGT+AGG | - | chr5.1:62837696-62837715 | MS.gene32501:intron | 20.0% |
| !!! | TTTTATGTTATTGTAGATAC+GGG | - | chr5.1:62840407-62840426 | MS.gene32501:intron | 20.0% |
| ! | AAATTGAGGTAGGTTAATTA+TGG | - | chr5.1:62837706-62837725 | MS.gene32501:intron | 25.0% |
| ! | AATAGAGTTGCAAATCTTAA+TGG | - | chr5.1:62840180-62840199 | MS.gene32501:intron | 25.0% |
| ! | AATATTTGCATATTTGCTTC+AGG | + | chr5.1:62838380-62838399 | None:intergenic | 25.0% |
| ! | ACTATTTATTACTAACTGTG+TGG | - | chr5.1:62840379-62840398 | MS.gene32501:intron | 25.0% |
| ! | AGTATTATATTGTGCAATAG+TGG | - | chr5.1:62839121-62839140 | MS.gene32501:intron | 25.0% |
| ! | ATACATTTACTGAACTTATC+CGG | - | chr5.1:62840309-62840328 | MS.gene32501:intron | 25.0% |
| ! | ATAGAGTTGCAAATCTTAAT+GGG | - | chr5.1:62840181-62840200 | MS.gene32501:intron | 25.0% |
| ! | ATATTTGCATATTTGCTTCA+GGG | + | chr5.1:62838379-62838398 | None:intergenic | 25.0% |
| ! | TAATGTCATTCACTAATTTC+TGG | - | chr5.1:62839900-62839919 | MS.gene32501:intron | 25.0% |
| ! | TAATTCCTATTATTGAGAAG+AGG | + | chr5.1:62839334-62839353 | None:intergenic | 25.0% |
| ! | TAGCTAGTAAAACATTTACA+AGG | + | chr5.1:62838851-62838870 | None:intergenic | 25.0% |
| ! | TCTTCAATGAAAAGGAAAAA+GGG | + | chr5.1:62839244-62839263 | None:intergenic | 25.0% |
| ! | TGATGTTAGCTATATGAATA+CGG | - | chr5.1:62840534-62840553 | MS.gene32501:intron | 25.0% |
| ! | TTCAATGTAATTCACAAAGT+AGG | + | chr5.1:62839687-62839706 | None:intergenic | 25.0% |
| ! | TTTACTGTTATTATGTTCAC+TGG | - | chr5.1:62839644-62839663 | MS.gene32501:intron | 25.0% |
| ! | TTTGTTTGAGTAATTGAGTT+TGG | - | chr5.1:62837513-62837532 | MS.gene32501:CDS | 25.0% |
| !! | AACTTACTTTAGCATTTTGT+AGG | - | chr5.1:62840225-62840244 | MS.gene32501:CDS | 25.0% |
| !! | AGATTTTCTCTTCAATGAAA+AGG | + | chr5.1:62839252-62839271 | None:intergenic | 25.0% |
| !! | ATGCACAATCAATGAATTTT+GGG | + | chr5.1:62840352-62840371 | None:intergenic | 25.0% |
| !!! | TAGTAGAACTTGAGTTTTTT+TGG | - | chr5.1:62837638-62837657 | MS.gene32501:intron | 25.0% |
| AACTCCGCAATTTATAACAA+AGG | - | chr5.1:62839201-62839220 | MS.gene32501:intron | 30.0% | |
| AAGAAATTGCATCATTTGCT+AGG | - | chr5.1:62840847-62840866 | MS.gene32501:intron | 30.0% | |
| ACAATTTAAAGGCTTTCATG+AGG | + | chr5.1:62838534-62838553 | None:intergenic | 30.0% | |
| ACCTATTTGCAAGAAAAATG+CGG | + | chr5.1:62841063-62841082 | None:intergenic | 30.0% | |
| ATTGAAGGAACTTATCAATC+TGG | + | chr5.1:62840039-62840058 | None:intergenic | 30.0% | |
| CAATTTATAACAAAGGAGCT+GGG | - | chr5.1:62839208-62839227 | MS.gene32501:intron | 30.0% | |
| CCATAAAAAATAAGTGGACA+AGG | + | chr5.1:62840268-62840287 | None:intergenic | 30.0% | |
| CTCTTCAATGAAAAGGAAAA+AGG | + | chr5.1:62839245-62839264 | None:intergenic | 30.0% | |
| GGATACATGTATTAAGTCAT+GGG | - | chr5.1:62840286-62840305 | MS.gene32501:intron | 30.0% | |
| GTATATGTAAACCTTGAAGA+TGG | + | chr5.1:62839592-62839611 | None:intergenic | 30.0% | |
| GTTCAAATGCTAACCTTATA+AGG | - | chr5.1:62840626-62840645 | MS.gene32501:intron | 30.0% | |
| TAACAAGAAAAAAGCCACAA+TGG | + | chr5.1:62837769-62837788 | None:intergenic | 30.0% | |
| TACATTTACTGAACTTATCC+GGG | - | chr5.1:62840310-62840329 | MS.gene32501:intron | 30.0% | |
| TACTGAAGAGATGATGAAAA+TGG | + | chr5.1:62840680-62840699 | None:intergenic | 30.0% | |
| TAGAGTTGCAAATCTTAATG+GGG | - | chr5.1:62840182-62840201 | MS.gene32501:intron | 30.0% | |
| TATCTATGGTTATGCAATAG+TGG | - | chr5.1:62840567-62840586 | MS.gene32501:intron | 30.0% | |
| TATGTAAGACCTCAAGTTTA+AGG | + | chr5.1:62841009-62841028 | None:intergenic | 30.0% | |
| TCAGTACAATATTAGGTTTG+AGG | + | chr5.1:62839015-62839034 | None:intergenic | 30.0% | |
| TGGATACATGTATTAAGTCA+TGG | - | chr5.1:62840285-62840304 | MS.gene32501:intron | 30.0% | |
| TGTTGAAATGGAAATGAAAC+TGG | - | chr5.1:62837556-62837575 | MS.gene32501:intron | 30.0% | |
| TTAGAATAACCATAGGTTAC+CGG | - | chr5.1:62837889-62837908 | MS.gene32501:CDS | 30.0% | |
| TTGTTATAAATTGCGGAGTT+TGG | + | chr5.1:62839201-62839220 | None:intergenic | 30.0% | |
| ! | AGCTCCTTTGTTATAAATTG+CGG | + | chr5.1:62839208-62839227 | None:intergenic | 30.0% |
| ! | ATGCTAACCTTATAAGGTTT+TGG | - | chr5.1:62840632-62840651 | MS.gene32501:intron | 30.0% |
| ! | ATTTTTCTTGCAAATAGGTC+TGG | - | chr5.1:62841064-62841083 | MS.gene32501:CDS | 30.0% |
| ! | CATGCACAATCAATGAATTT+TGG | + | chr5.1:62840353-62840372 | None:intergenic | 30.0% |
| ! | CTTTGTAATGAATTGATGAC+CGG | - | chr5.1:62838567-62838586 | MS.gene32501:intron | 30.0% |
| ! | TATTGAAAGTATAGAAGCAC+AGG | + | chr5.1:62840155-62840174 | None:intergenic | 30.0% |
| !! | GGTTTTGTGTATTTTCTGTT+TGG | - | chr5.1:62838191-62838210 | MS.gene32501:intron | 30.0% |
| !!! | ATGTTAGTTTGTTTTACCGA+GGG | + | chr5.1:62839477-62839496 | None:intergenic | 30.0% |
| !!! | CCTTGTCCACTTATTTTTTA+TGG | - | chr5.1:62840265-62840284 | MS.gene32501:intron | 30.0% |
| !!! | TATACTCTCATTTTTTACCG+AGG | - | chr5.1:62839805-62839824 | MS.gene32501:intron | 30.0% |
| AAACCAATTATGATGCGATC+TGG | - | chr5.1:62838752-62838771 | MS.gene32501:intron | 35.0% | |
| AACCAATTATGATGCGATCT+GGG | - | chr5.1:62838753-62838772 | MS.gene32501:intron | 35.0% | |
| AAGAGATGATGAAAATGGAG+AGG | + | chr5.1:62840675-62840694 | None:intergenic | 35.0% | |
| AATTGCGGAGTTTGGAAAAT+AGG | + | chr5.1:62839193-62839212 | None:intergenic | 35.0% | |
| ACAAAATTCATCCCAGTTGT+TGG | + | chr5.1:62840724-62840743 | None:intergenic | 35.0% | |
| ACATGCACCAAAACCTTATA+AGG | + | chr5.1:62840642-62840661 | None:intergenic | 35.0% | |
| ACATTTACTGAACTTATCCG+GGG | - | chr5.1:62840311-62840330 | MS.gene32501:intron | 35.0% | |
| AGAAAAGACTACGAAACATG+TGG | - | chr5.1:62838238-62838257 | MS.gene32501:intron | 35.0% | |
| AGAAAGCAATGACATTTCAG+TGG | - | chr5.1:62841028-62841047 | MS.gene32501:intron | 35.0% | |
| AGAGATGATGAAAATGGAGA+GGG | + | chr5.1:62840674-62840693 | None:intergenic | 35.0% | |
| AGAGTTGCAAATCTTAATGG+GGG | - | chr5.1:62840183-62840202 | MS.gene32501:intron | 35.0% | |
| ATAAGTTCCTTCAATCCAGT+TGG | - | chr5.1:62840044-62840063 | MS.gene32501:CDS | 35.0% | |
| ATGGAAATGAAACTGGAAAG+AGG | - | chr5.1:62837563-62837582 | MS.gene32501:intron | 35.0% | |
| ATGTTGTTGCATAAGGAATG+TGG | + | chr5.1:62840488-62840507 | None:intergenic | 35.0% | |
| ATTGCGGAGTTTGGAAAATA+GGG | + | chr5.1:62839192-62839211 | None:intergenic | 35.0% | |
| ATTGTAGATACGGGCTTATA+TGG | - | chr5.1:62840416-62840435 | MS.gene32501:intron | 35.0% | |
| CAAAATTCATCCCAGTTGTT+GGG | + | chr5.1:62840723-62840742 | None:intergenic | 35.0% | |
| CAGAATCAAATCAACAACCT+CGG | + | chr5.1:62839825-62839844 | None:intergenic | 35.0% | |
| CTTGAGATATGCATTACTAG+TGG | + | chr5.1:62839730-62839749 | None:intergenic | 35.0% | |
| GAAAAGACTACGAAACATGT+GGG | - | chr5.1:62838239-62838258 | MS.gene32501:intron | 35.0% | |
| GAAGAATCTTCTTCTTACAC+TGG | - | chr5.1:62837369-62837388 | MS.gene32501:CDS | 35.0% | |
| GAAGTAGAACTGCTTGATTA+TGG | - | chr5.1:62838947-62838966 | MS.gene32501:intron | 35.0% | |
| GCAATTTATAACAAAGGAGC+TGG | - | chr5.1:62839207-62839226 | MS.gene32501:intron | 35.0% | |
| GGACACATTAGAATAACCAT+AGG | - | chr5.1:62837882-62837901 | MS.gene32501:CDS | 35.0% | |
| TAATTCCAGTTGAGATTCTG+CGG | - | chr5.1:62840937-62840956 | MS.gene32501:intron | 35.0% | |
| TACTTCTTCCTTCAGTACAT+GGG | - | chr5.1:62840604-62840623 | MS.gene32501:intron | 35.0% | |
| TATATGGATCTCAACGACAT+TGG | - | chr5.1:62840432-62840451 | MS.gene32501:intron | 35.0% | |
| TATCTGCATGTTGTTGCATA+AGG | + | chr5.1:62840495-62840514 | None:intergenic | 35.0% | |
| TCCTAAACCCCAAATAACAA+GGG | + | chr5.1:62838919-62838938 | None:intergenic | 35.0% | |
| TGAATGTGTCAATGCTTCAT+AGG | - | chr5.1:62837944-62837963 | MS.gene32501:CDS | 35.0% | |
| TGCTACATAAATTCCAAACG+TGG | + | chr5.1:62837817-62837836 | None:intergenic | 35.0% | |
| TGGATCATAACACTCATTAC+TGG | - | chr5.1:62840960-62840979 | MS.gene32501:intron | 35.0% | |
| TTTCATGAGGAAAAAAGCCA+TGG | + | chr5.1:62838521-62838540 | None:intergenic | 35.0% | |
| ! | ACAAATGGAACATTCTGAGA+CGG | + | chr5.1:62838973-62838992 | None:intergenic | 35.0% |
| ! | AGTTTTCTCATAAGCCATCT+TGG | + | chr5.1:62838084-62838103 | None:intergenic | 35.0% |
| ! | CATTACTCTACTATTGGTTG+AGG | - | chr5.1:62838777-62838796 | MS.gene32501:intron | 35.0% |
| !! | ACATTTTCGGTCAAAAGTGT+TGG | + | chr5.1:62837840-62837859 | None:intergenic | 35.0% |
| !! | ATGAAGCATTGACACATTCA+CGG | + | chr5.1:62837944-62837963 | None:intergenic | 35.0% |
| !! | TACAAATGGCAGCTATTTTC+AGG | + | chr5.1:62839856-62839875 | None:intergenic | 35.0% |
| !! | TATAAGGTTTTGGTGCATGT+GGG | - | chr5.1:62840642-62840661 | MS.gene32501:intron | 35.0% |
| !! | TTAAAGATTTCGAGTTCGAG+TGG | - | chr5.1:62838612-62838631 | MS.gene32501:intron | 35.0% |
| !! | TTATAAGGTTTTGGTGCATG+TGG | - | chr5.1:62840641-62840660 | MS.gene32501:intron | 35.0% |
| !!! | CATGTTAGTTTGTTTTACCG+AGG | + | chr5.1:62839478-62839497 | None:intergenic | 35.0% |
| !!! | GTATTTTCTGTTTGGTGTTC+AGG | - | chr5.1:62838199-62838218 | MS.gene32501:intron | 35.0% |
| !!! | TGTTAGTTTGTTTTACCGAG+GGG | + | chr5.1:62839476-62839495 | None:intergenic | 35.0% |
| AACAACAGCCAACAAACAAC+TGG | - | chr5.1:62839949-62839968 | MS.gene32501:intron | 40.0% | |
| AATAACAAGGGGAAAGAGGA+AGG | + | chr5.1:62838907-62838926 | None:intergenic | 40.0% | |
| AATGGATCATTTCTCCACAC+CGG | + | chr5.1:62838589-62838608 | None:intergenic | 40.0% | |
| ACTATAGCGCTATTGCATAG+TGG | - | chr5.1:62839059-62839078 | MS.gene32501:intron | 40.0% | |
| AGAAACAGAACGCACAAATC+AGG | + | chr5.1:62840101-62840120 | None:intergenic | 40.0% | |
| AGCTGCCTCTTCTCAATAAT+AGG | - | chr5.1:62839326-62839345 | MS.gene32501:intron | 40.0% | |
| AGGAAGAAGTAGTATGCCAT+TGG | + | chr5.1:62840595-62840614 | None:intergenic | 40.0% | |
| ATGCAACAACATGCAGATAG+CGG | - | chr5.1:62840496-62840515 | MS.gene32501:intron | 40.0% | |
| CAAGCAGTTCTACTTCAAAC+TGG | + | chr5.1:62838943-62838962 | None:intergenic | 40.0% | |
| CATTTGAACCCATGTACTGA+AGG | + | chr5.1:62840615-62840634 | None:intergenic | 40.0% | |
| CCTAAACCCCAAATAACAAG+GGG | + | chr5.1:62838918-62838937 | None:intergenic | 40.0% | |
| CTACTTCTTCCTTCAGTACA+TGG | - | chr5.1:62840603-62840622 | MS.gene32501:intron | 40.0% | |
| CTCCTAAACCCCAAATAACA+AGG | + | chr5.1:62838920-62838939 | None:intergenic | 40.0% | |
| CTCCTACTGGTATGTTATCT+AGG | - | chr5.1:62838456-62838475 | MS.gene32501:CDS | 40.0% | |
| CTGGGTCATTACTCTACTAT+TGG | - | chr5.1:62838771-62838790 | MS.gene32501:intron | 40.0% | |
| GAAACAGAACGCACAAATCA+GGG | + | chr5.1:62840100-62840119 | None:intergenic | 40.0% | |
| GACCTAGATAACATACCAGT+AGG | + | chr5.1:62838461-62838480 | None:intergenic | 40.0% | |
| GAGTTGCAAATCTTAATGGG+GGG | - | chr5.1:62840184-62840203 | MS.gene32501:intron | 40.0% | |
| GGAAATGATCCTTAAAACCC+CGG | + | chr5.1:62840331-62840350 | None:intergenic | 40.0% | |
| GGAAGAAGTAGTATGCCATT+GGG | + | chr5.1:62840594-62840613 | None:intergenic | 40.0% | |
| GTTGTTCAAATGCTTCTGCA+TGG | + | chr5.1:62839935-62839954 | None:intergenic | 40.0% | |
| TATCATCTGAGTTGCCATTG+TGG | - | chr5.1:62837752-62837771 | MS.gene32501:intron | 40.0% | |
| TGTGTCAATGCTTCATAGGT+TGG | - | chr5.1:62837948-62837967 | MS.gene32501:CDS | 40.0% | |
| TTATGCAATAGTGGTCCCAA+TGG | - | chr5.1:62840576-62840595 | MS.gene32501:intron | 40.0% | |
| TTGCGGAGTTTGGAAAATAG+GGG | + | chr5.1:62839191-62839210 | None:intergenic | 40.0% | |
| TTTCCATAAGCTCTCCAAGA+TGG | - | chr5.1:62838067-62838086 | MS.gene32501:intron | 40.0% | |
| ! | CAAGTTTAAGGCAACAAAGC+TGG | + | chr5.1:62840997-62841016 | None:intergenic | 40.0% |
| ! | CTCTGGCTCAGTACAATATT+AGG | + | chr5.1:62839022-62839041 | None:intergenic | 40.0% |
| ! | GAGTTATGTTTTGCCACGTT+TGG | - | chr5.1:62837801-62837820 | MS.gene32501:CDS | 40.0% |
| ! | GCCGCATTTTTCTTGCAAAT+AGG | - | chr5.1:62841059-62841078 | MS.gene32501:CDS | 40.0% |
| ! | GCTTTGTTGCCTTAAACTTG+AGG | - | chr5.1:62840997-62841016 | MS.gene32501:intron | 40.0% |
| ! | TAATGAATTGATGACCGGTG+TGG | - | chr5.1:62838572-62838591 | MS.gene32501:intron | 40.0% |
| ! | TCGTGTCACACACACATTTT+CGG | + | chr5.1:62837853-62837872 | None:intergenic | 40.0% |
| ! | TGAACTTATCCGGGGTTTTA+AGG | - | chr5.1:62840319-62840338 | MS.gene32501:intron | 40.0% |
| !! | ATAAGGTTTTGGTGCATGTG+GGG | - | chr5.1:62840643-62840662 | MS.gene32501:intron | 40.0% |
| !! | CCTCTTTCCCCTTGTTATTT+GGG | - | chr5.1:62838908-62838927 | MS.gene32501:intron | 40.0% |
| !! | CTCTTTCCCCTTGTTATTTG+GGG | - | chr5.1:62838909-62838928 | MS.gene32501:intron | 40.0% |
| !! | TCCTCTTTCCCCTTGTTATT+TGG | - | chr5.1:62838907-62838926 | MS.gene32501:intron | 40.0% |
| AACAGCCAACAAACAACTGG+AGG | - | chr5.1:62839952-62839971 | MS.gene32501:intron | 45.0% | |
| AACATGTGGGTACGGAGTTA+TGG | - | chr5.1:62838252-62838271 | MS.gene32501:intron | 45.0% | |
| AAGCCATCTTGGAGAGCTTA+TGG | + | chr5.1:62838073-62838092 | None:intergenic | 45.0% | |
| AATGTGTGTGTGACACGACA+CGG | - | chr5.1:62837855-62837874 | MS.gene32501:CDS | 45.0% | |
| ACAGCCAACAAACAACTGGA+GGG | - | chr5.1:62839953-62839972 | MS.gene32501:intron | 45.0% | |
| AGTTCCTTCAATCCAGTTGG+TGG | - | chr5.1:62840047-62840066 | MS.gene32501:CDS | 45.0% | |
| CCCAAATAACAAGGGGAAAG+AGG | + | chr5.1:62838911-62838930 | None:intergenic | 45.0% | |
| GACCCAGATCGCATCATAAT+TGG | + | chr5.1:62838758-62838777 | None:intergenic | 45.0% | |
| GACTACGAAACATGTGGGTA+CGG | - | chr5.1:62838244-62838263 | MS.gene32501:intron | 45.0% | |
| GCAACTGTGTACCATCTTCA+AGG | - | chr5.1:62839578-62839597 | MS.gene32501:intron | 45.0% | |
| GCCAGAGTGTAGTTAGATAG+CGG | - | chr5.1:62839035-62839054 | MS.gene32501:intron | 45.0% | |
| GCTAACATCAAAGCTCCATG+AGG | + | chr5.1:62840524-62840543 | None:intergenic | 45.0% | |
| GCTATATGAATACGGCTGCA+TGG | - | chr5.1:62840542-62840561 | MS.gene32501:intron | 45.0% | |
| GTTCAGGCTGTCATAGTTGA+AGG | - | chr5.1:62838215-62838234 | MS.gene32501:intron | 45.0% | |
| TCTTCCTAAGCCCAACAACT+GGG | - | chr5.1:62840710-62840729 | MS.gene32501:intron | 45.0% | |
| TGACATTTCAGTGGCGATCA+TGG | - | chr5.1:62841037-62841056 | MS.gene32501:intron | 45.0% | |
| TGGCAGTCTTCATCAAGGTT+TGG | - | chr5.1:62841084-62841103 | MS.gene32501:CDS | 45.0% | |
| TTCTTCCTAAGCCCAACAAC+TGG | - | chr5.1:62840709-62840728 | MS.gene32501:intron | 45.0% | |
| TTGTGCAATAGTGGCTACAG+CGG | - | chr5.1:62839130-62839149 | MS.gene32501:intron | 45.0% | |
| !! | ACTCATTACTGGTGTTGCGT+CGG | - | chr5.1:62840971-62840990 | MS.gene32501:intron | 45.0% |
| !! | CCCCTTGTTATTTGGGGTTT+AGG | - | chr5.1:62838915-62838934 | MS.gene32501:intron | 45.0% |
| !! | TTTCGAGTTCGAGTGGATAC+TGG | - | chr5.1:62838619-62838638 | MS.gene32501:intron | 45.0% |
| !! | TTAAAAAAAAAAAAAACTTA+CGG | + | chr5.1:62837427-62837446 | None:intergenic | 5.0% |
| AACCCCCTCCAGTTGTTTGT+TGG | + | chr5.1:62839960-62839979 | None:intergenic | 50.0% | |
| ACGGCTGCATGGTCTATCTA+TGG | - | chr5.1:62840553-62840572 | MS.gene32501:intron | 50.0% | |
| ACGTCAACACCGGTAACCTA+TGG | + | chr5.1:62837901-62837920 | None:intergenic | 50.0% | |
| AGCCAACAAACAACTGGAGG+GGG | - | chr5.1:62839955-62839974 | MS.gene32501:intron | 50.0% | |
| AGGTCTGGCAGTCTTCATCA+AGG | - | chr5.1:62841079-62841098 | MS.gene32501:CDS | 50.0% | |
| ATCCACCGCAGAATCTCAAC+TGG | + | chr5.1:62840945-62840964 | None:intergenic | 50.0% | |
| CAAACTGTTGGCACTCCTAC+TGG | - | chr5.1:62838443-62838462 | MS.gene32501:CDS | 50.0% | |
| CAGCCAACAAACAACTGGAG+GGG | - | chr5.1:62839954-62839973 | MS.gene32501:intron | 50.0% | |
| CGACACTAACACGTCAACAC+CGG | + | chr5.1:62837911-62837930 | None:intergenic | 50.0% | |
| CGGGGAGGATATCAAACTGT+TGG | - | chr5.1:62838431-62838450 | MS.gene32501:CDS | 50.0% | |
| CTGAAGAAGTCTCCACCAAC+TGG | + | chr5.1:62840062-62840081 | None:intergenic | 50.0% | |
| CTTCCTACTAGCCACTTGCT+CGG | - | chr5.1:62837393-62837412 | MS.gene32501:CDS | 50.0% | |
| GCCGCTATCTAACTACACTC+TGG | + | chr5.1:62839039-62839058 | None:intergenic | 50.0% | |
| GTCTCCACCAACTGGATTGA+AGG | + | chr5.1:62840054-62840073 | None:intergenic | 50.0% | |
| GTCTTTGTACTTGCCTCGCT+TGG | - | chr5.1:62840454-62840473 | MS.gene32501:intron | 50.0% | |
| TCATCCCAGTTGTTGGGCTT+AGG | + | chr5.1:62840717-62840736 | None:intergenic | 50.0% | |
| TGACGTGTTAGTGTCGTGTC+TGG | - | chr5.1:62837915-62837934 | MS.gene32501:CDS | 50.0% | |
| TGTGGCAAGATTTCCAAGCG+AGG | + | chr5.1:62840470-62840489 | None:intergenic | 50.0% | |
| TTCCAGTTGAGATTCTGCGG+TGG | - | chr5.1:62840940-62840959 | MS.gene32501:intron | 50.0% | |
| ! | ATGCAGATAGCGGTACCTCA+TGG | - | chr5.1:62840506-62840525 | MS.gene32501:intron | 50.0% |
| ATATTCCCTCCCGCCACCAA+CGG | - | chr5.1:62838395-62838414 | MS.gene32501:CDS | 55.0% | |
| CGTGTTAGTGTCGTGTCTGG+TGG | - | chr5.1:62837918-62837937 | MS.gene32501:CDS | 55.0% | |
| CTCAATCATCAGCTGCCCCT+CGG | - | chr5.1:62839458-62839477 | MS.gene32501:intron | 55.0% | |
| GAACCGAGCAAGTGGCTAGT+AGG | + | chr5.1:62837399-62837418 | None:intergenic | 55.0% | |
| TGTGTGACACGACACGGACA+CGG | - | chr5.1:62837861-62837880 | MS.gene32501:CDS | 55.0% | |
| AACGGAGGAGACAGAGGACG+GGG | - | chr5.1:62838413-62838432 | MS.gene32501:CDS | 60.0% | |
| CAACGGAGGAGACAGAGGAC+GGG | - | chr5.1:62838412-62838431 | MS.gene32501:CDS | 60.0% | |
| CCAACGGAGGAGACAGAGGA+CGG | - | chr5.1:62838411-62838430 | MS.gene32501:CDS | 60.0% | |
| CGGGAACTGAACCGAGCAAG+TGG | + | chr5.1:62837407-62837426 | None:intergenic | 60.0% | |
| TCCTCTGTCTCCTCCGTTGG+TGG | + | chr5.1:62838411-62838430 | None:intergenic | 60.0% | |
| ! | TCTGTCTCCTCCGTTGGTGG+CGG | + | chr5.1:62838408-62838427 | None:intergenic | 60.0% |
| CCGTCCTCTGTCTCCTCCGT+TGG | + | chr5.1:62838414-62838433 | None:intergenic | 65.0% | |
| GCCACCAACGGAGGAGACAG+AGG | - | chr5.1:62838407-62838426 | MS.gene32501:CDS | 65.0% | |
| !! | CTGTCTCCTCCGTTGGTGGC+GGG | + | chr5.1:62838407-62838426 | None:intergenic | 65.0% |
| GGAGGAGACAGAGGACGGGG+AGG | - | chr5.1:62838416-62838435 | MS.gene32501:CDS | 70.0% | |
| TTCCCTCCCGCCACCAACGG+AGG | - | chr5.1:62838398-62838417 | MS.gene32501:CDS | 70.0% | |
| !! | CTCCTCCGTTGGTGGCGGGA+GGG | + | chr5.1:62838403-62838422 | None:intergenic | 70.0% |
| !! | TCTCCTCCGTTGGTGGCGGG+AGG | + | chr5.1:62838404-62838423 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 62837366 | 62841118 | 62837366 | ID=MS.gene32501 |
| chr5.1 | mRNA | 62837366 | 62841118 | 62837366 | ID=MS.gene32501.t1;Parent=MS.gene32501 |
| chr5.1 | exon | 62841059 | 62841118 | 62841059 | ID=MS.gene32501.t1.exon1;Parent=MS.gene32501.t1 |
| chr5.1 | CDS | 62841059 | 62841118 | 62841059 | ID=cds.MS.gene32501.t1;Parent=MS.gene32501.t1 |
| chr5.1 | exon | 62840224 | 62840263 | 62840224 | ID=MS.gene32501.t1.exon2;Parent=MS.gene32501.t1 |
| chr5.1 | CDS | 62840224 | 62840263 | 62840224 | ID=cds.MS.gene32501.t1;Parent=MS.gene32501.t1 |
| chr5.1 | exon | 62840020 | 62840109 | 62840020 | ID=MS.gene32501.t1.exon3;Parent=MS.gene32501.t1 |
| chr5.1 | CDS | 62840020 | 62840109 | 62840020 | ID=cds.MS.gene32501.t1;Parent=MS.gene32501.t1 |
| chr5.1 | exon | 62838379 | 62838544 | 62838379 | ID=MS.gene32501.t1.exon4;Parent=MS.gene32501.t1 |
| chr5.1 | CDS | 62838379 | 62838544 | 62838379 | ID=cds.MS.gene32501.t1;Parent=MS.gene32501.t1 |
| chr5.1 | exon | 62837788 | 62838061 | 62837788 | ID=MS.gene32501.t1.exon5;Parent=MS.gene32501.t1 |
| chr5.1 | CDS | 62837788 | 62838061 | 62837788 | ID=cds.MS.gene32501.t1;Parent=MS.gene32501.t1 |
| chr5.1 | exon | 62837366 | 62837557 | 62837366 | ID=MS.gene32501.t1.exon6;Parent=MS.gene32501.t1 |
| chr5.1 | CDS | 62837366 | 62837557 | 62837366 | ID=cds.MS.gene32501.t1;Parent=MS.gene32501.t1 |
| Gene Sequence |
| Protein sequence |
