Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33355.t1 | XP_013454739.1 | 89.3 | 448 | 37 | 2 | 1 | 448 | 1 | 437 | 2.80E-139 | 505.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33355.t1 | Q9LW88 | 37.6 | 474 | 259 | 9 | 1 | 447 | 1 | 464 | 4.3e-56 | 220.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33355.t1 | A0A072USC3 | 89.3 | 448 | 37 | 2 | 1 | 448 | 1 | 437 | 2.0e-139 | 505.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene33355 | MS.gene036223 | PPI |
| MS.gene33355 | MS.gene39989 | PPI |
| MS.gene33355 | MS.gene32049 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33355.t1 | MTR_4g011930 | 93.973 | 448 | 16 | 2 | 1 | 448 | 1 | 437 | 0.0 | 823 |
| MS.gene33355.t1 | MTR_7g060890 | 51.748 | 143 | 25 | 1 | 1 | 143 | 1 | 99 | 1.83e-32 | 119 |
| MS.gene33355.t1 | MTR_3g032750 | 50.350 | 143 | 33 | 3 | 1 | 143 | 1 | 105 | 7.93e-31 | 120 |
| MS.gene33355.t1 | MTR_1g112060 | 75.000 | 88 | 20 | 1 | 1 | 86 | 115 | 202 | 4.06e-28 | 112 |
| MS.gene33355.t1 | MTR_4g014050 | 29.412 | 221 | 129 | 8 | 3 | 218 | 717 | 915 | 5.19e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33355.t1 | AT1G52380 | 45.745 | 470 | 201 | 14 | 1 | 447 | 1 | 439 | 3.92e-103 | 314 |
| MS.gene33355.t1 | AT1G52380 | 45.745 | 470 | 201 | 14 | 1 | 447 | 1 | 439 | 3.92e-103 | 314 |
| MS.gene33355.t1 | AT1G52380 | 45.745 | 470 | 201 | 14 | 1 | 447 | 1 | 439 | 3.92e-103 | 314 |
| MS.gene33355.t1 | AT1G52380 | 45.745 | 470 | 201 | 14 | 1 | 447 | 1 | 439 | 3.92e-103 | 314 |
| MS.gene33355.t1 | AT3G15970 | 42.149 | 484 | 223 | 14 | 1 | 447 | 1 | 464 | 1.24e-90 | 283 |
| MS.gene33355.t1 | AT3G15970 | 42.149 | 484 | 223 | 14 | 1 | 447 | 1 | 464 | 1.24e-90 | 283 |
Find 121 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACAGGTCTTGCTGGGTC+TGG | 0.282996 | 4.4:+87582415 | MS.gene33355:CDS |
| TGAAATGAAGCTCACAAATA+TGG | 0.293632 | 4.4:+87582828 | MS.gene33355:CDS |
| ATATTTGTGAGCTTCATTTC+AGG | 0.313432 | 4.4:-87582826 | None:intergenic |
| CCGAGTCCTTATGAGGTCTA+AGG | 0.316914 | 4.4:+87582768 | MS.gene33355:CDS |
| TTATCTAACGCTGGAAGTTC+TGG | 0.321462 | 4.4:+87582550 | MS.gene33355:CDS |
| TTGAAACCTGACCAGCCTTT+AGG | 0.324636 | 4.4:+87582520 | MS.gene33355:CDS |
| TAAGAAGGAAGTTGCTGATA+AGG | 0.332879 | 4.4:+87582159 | MS.gene33355:CDS |
| TGTTACTTTGACCATTCTTC+TGG | 0.332895 | 4.4:-87581834 | None:intergenic |
| AACGCTGGAAGTTCTGGTTT+TGG | 0.337784 | 4.4:+87582556 | MS.gene33355:CDS |
| AATGCCTTCACAGGTCTTGC+TGG | 0.338943 | 4.4:+87582409 | MS.gene33355:CDS |
| CCTGACCAGCCTTTAGGTCT+TGG | 0.361060 | 4.4:+87582526 | MS.gene33355:CDS |
| TCATCTTCCTCGTCGTCAAT+AGG | 0.362423 | 4.4:-87581758 | None:intergenic |
| ACCTCAGGAGCTTTGCTCTC+TGG | 0.367425 | 4.4:-87581995 | None:intergenic |
| TGTAGACCCGAAGGAAAATA+AGG | 0.369166 | 4.4:-87582449 | None:intergenic |
| TCTTCATCCTTAGCTTTCTC+TGG | 0.371345 | 4.4:-87581962 | None:intergenic |
| AACAAATGATGGGTCTACTT+TGG | 0.384601 | 4.4:+87582471 | MS.gene33355:CDS |
| CGTATACCAGCGAAAGGGTT+TGG | 0.386213 | 4.4:-87581881 | None:intergenic |
| GAAACCTTGGGAGAGTTCTC+TGG | 0.386505 | 4.4:-87583000 | None:intergenic |
| TCTACTTTGGGTAGTGGGTC+CGG | 0.396921 | 4.4:+87582484 | MS.gene33355:CDS |
| TTCCTGCAGTGTTTCAGTCT+TGG | 0.406473 | 4.4:-87582602 | None:intergenic |
| GAGCGACAGTGACAACTCTA+AGG | 0.408430 | 4.4:+87582090 | MS.gene33355:CDS |
| AATTTCCCTTAGACCTCATA+AGG | 0.415992 | 4.4:-87582774 | None:intergenic |
| CCTTACAGTCGTCAAAGAAA+AGG | 0.420646 | 4.4:+87581705 | MS.gene33355:CDS |
| CCAAGACCTAAAGGCTGGTC+AGG | 0.423398 | 4.4:-87582526 | None:intergenic |
| ACAAATGATGGGTCTACTTT+GGG | 0.423993 | 4.4:+87582472 | MS.gene33355:CDS |
| GGTTGGAAGGAACGTGGAAA+GGG | 0.429315 | 4.4:+87582703 | MS.gene33355:CDS |
| TTTGCATTGAAGTTCAAAGA+TGG | 0.435158 | 4.4:+87582907 | MS.gene33355:CDS |
| ACTGAATCCACTGCCAAGTC+TGG | 0.437172 | 4.4:+87581917 | MS.gene33355:CDS |
| TATTTGTGAGCTTCATTTCA+GGG | 0.440319 | 4.4:-87582825 | None:intergenic |
| TTCGGGTCTACAACAAATGA+TGG | 0.442733 | 4.4:+87582460 | MS.gene33355:CDS |
| CCTTAGACCTCATAAGGACT+CGG | 0.444298 | 4.4:-87582768 | None:intergenic |
| GAGCAAAGCTCCTGAGGTTG+AGG | 0.446588 | 4.4:+87582000 | MS.gene33355:CDS |
| AGGCAAGGAGCTTGCGGAGA+AGG | 0.452508 | 4.4:+87582066 | MS.gene33355:CDS |
| GGTAGATAATGAACAGAGTA+AGG | 0.452713 | 4.4:+87582111 | MS.gene33355:CDS |
| TCGTCAAAGAAAAGGGCTGC+TGG | 0.453932 | 4.4:+87581713 | MS.gene33355:CDS |
| AGTAAGTGAAAGCAAGGATA+AGG | 0.460546 | 4.4:+87582282 | MS.gene33355:CDS |
| AGCTCAAACATCAGAAACCT+TGG | 0.463809 | 4.4:-87583013 | None:intergenic |
| GATTGAAAATGAGGATAAGA+AGG | 0.464936 | 4.4:+87582144 | MS.gene33355:CDS |
| CAGGAAGTCGTTGTTGAAAC+CGG | 0.466180 | 4.4:+87582619 | MS.gene33355:CDS |
| GCTCACAAATATGGAGAAGA+AGG | 0.474042 | 4.4:+87582837 | MS.gene33355:CDS |
| ATGGGTCTACTTTGGGTAGT+GGG | 0.480263 | 4.4:+87582479 | MS.gene33355:CDS |
| ACTGGCTTTCTTGAAAGTCC+CGG | 0.480603 | 4.4:-87581795 | None:intergenic |
| AGTAGTAGCTTCACCAGACT+TGG | 0.481005 | 4.4:-87581930 | None:intergenic |
| ATGACGCTGCCTTTGAAGCC+GGG | 0.483194 | 4.4:+87581777 | MS.gene33355:CDS |
| GGTTGCAAGAACCTCCTCAC+TGG | 0.485123 | 4.4:-87581813 | None:intergenic |
| AAATAGTGAAAGCAAGGATA+AGG | 0.486758 | 4.4:+87582252 | MS.gene33355:CDS |
| CCCTTCAGTGGCACATGCAA+AGG | 0.487875 | 4.4:-87582866 | None:intergenic |
| GATGACGCTGCCTTTGAAGC+CGG | 0.495014 | 4.4:+87581776 | MS.gene33355:CDS |
| AGGTTGGAAGGAACGTGGAA+AGG | 0.496279 | 4.4:+87582702 | MS.gene33355:CDS |
| CGTCGTCAATAGGAGTGTCT+CGG | 0.502212 | 4.4:-87581748 | None:intergenic |
| GCTGTTGAAATGATTTGAAA+GGG | 0.504844 | 4.4:-87582372 | None:intergenic |
| CTTACAGTCGTCAAAGAAAA+GGG | 0.505584 | 4.4:+87581706 | MS.gene33355:CDS |
| GATGGGTCTACTTTGGGTAG+TGG | 0.506943 | 4.4:+87582478 | MS.gene33355:CDS |
| TTGCATTGAAGTTCAAAGAT+GGG | 0.509535 | 4.4:+87582908 | MS.gene33355:CDS |
| AGTCTTGAAATCCTCCACTA+TGG | 0.509950 | 4.4:-87582932 | None:intergenic |
| TTGGAGTAGATTTATTCTGT+TGG | 0.517375 | 4.4:-87581862 | None:intergenic |
| CTTGAAAGTCCCGGCTTCAA+AGG | 0.519057 | 4.4:-87581786 | None:intergenic |
| TTGAGTTTGCAGATGGAGGT+TGG | 0.519670 | 4.4:+87582686 | MS.gene33355:CDS |
| TTAGATAAACCAAGACCTAA+AGG | 0.521590 | 4.4:-87582535 | None:intergenic |
| AGTAAGCGAAAGCAAAGATA+AGG | 0.521711 | 4.4:+87582312 | MS.gene33355:CDS |
| TTGTTTGAGTTTGCAGATGG+AGG | 0.522768 | 4.4:+87582682 | MS.gene33355:CDS |
| GTAGATTTGTCCTCAACCTC+AGG | 0.523191 | 4.4:-87582010 | None:intergenic |
| ATGCCTTCACAGGTCTTGCT+GGG | 0.525899 | 4.4:+87582410 | MS.gene33355:CDS |
| TGGACGTAAGATTGAAAATG+AGG | 0.525984 | 4.4:+87582135 | MS.gene33355:CDS |
| GCTCAAACATCAGAAACCTT+GGG | 0.528235 | 4.4:-87583012 | None:intergenic |
| GTCGTCAATAGGAGTGTCTC+GGG | 0.531300 | 4.4:-87581747 | None:intergenic |
| GTGTTGTTTGAGTTTGCAGA+TGG | 0.533735 | 4.4:+87582679 | MS.gene33355:CDS |
| CGGTGAAGAAAACGAGGAAG+TGG | 0.537379 | 4.4:+87582639 | MS.gene33355:CDS |
| AGCTGTTGAAATGATTTGAA+AGG | 0.539560 | 4.4:-87582373 | None:intergenic |
| CTATCACAGCACACAAGGGT+GGG | 0.539717 | 4.4:+87582956 | MS.gene33355:CDS |
| GTTTGCAGATGGAGGTTGGA+AGG | 0.542312 | 4.4:+87582690 | MS.gene33355:CDS |
| GGTTCTTGCAACCAGAAGAA+TGG | 0.542934 | 4.4:+87581823 | MS.gene33355:CDS |
| AGACAAAGTAAGTGAAAGCA+AGG | 0.543217 | 4.4:+87582276 | MS.gene33355:CDS |
| GATAATGAACAGAGTAAGGA+TGG | 0.544320 | 4.4:+87582115 | MS.gene33355:CDS |
| AAAGGGCCACCTTCAGCAGT+AGG | 0.547591 | 4.4:-87582355 | None:intergenic |
| AGCAATCAAAATGCCTTCAC+AGG | 0.548375 | 4.4:+87582400 | MS.gene33355:CDS |
| ATAAACCAAGACCTAAAGGC+TGG | 0.555593 | 4.4:-87582531 | None:intergenic |
| AGCTTCACCAGACTTGGCAG+TGG | 0.560811 | 4.4:-87581924 | None:intergenic |
| AACTAGTGGAACAGAAAAGA+AGG | 0.562452 | 4.4:+87582744 | MS.gene33355:CDS |
| GCCAGAGAGCAAAGCTCCTG+AGG | 0.563576 | 4.4:+87581994 | MS.gene33355:CDS |
| TTCCAAGACTGAAACACTGC+AGG | 0.563759 | 4.4:+87582600 | MS.gene33355:CDS |
| GCAGTGGATTCAGTAGGAGC+AGG | 0.564389 | 4.4:-87581908 | None:intergenic |
| CGTCAAAGAAAAGGGCTGCT+GGG | 0.566029 | 4.4:+87581714 | MS.gene33355:CDS |
| CGAGTCCTTATGAGGTCTAA+GGG | 0.566826 | 4.4:+87582769 | MS.gene33355:CDS |
| CAATGCAGGCAAGGAGCTTG+CGG | 0.566828 | 4.4:+87582060 | MS.gene33355:CDS |
| AAGACGGTCTTTCCCTTCAG+TGG | 0.567228 | 4.4:-87582878 | None:intergenic |
| TCTACTCCAAACCCTTTCGC+TGG | 0.571206 | 4.4:+87581875 | MS.gene33355:CDS |
| AGAAGGCCCGAGTCCTTATG+AGG | 0.572817 | 4.4:+87582761 | MS.gene33355:CDS |
| GGCAAGCGTATACCAGCGAA+AGG | 0.572904 | 4.4:-87581887 | None:intergenic |
| GACTGCTATCACAGCACACA+AGG | 0.572911 | 4.4:+87582951 | MS.gene33355:CDS |
| CCTTTGCATGTGCCACTGAA+GGG | 0.575965 | 4.4:+87582866 | MS.gene33355:CDS |
| GAACGGAAATAGTGAAAGCA+AGG | 0.577253 | 4.4:+87582246 | MS.gene33355:CDS |
| ACCTTTGCATGTGCCACTGA+AGG | 0.579423 | 4.4:+87582865 | MS.gene33355:CDS |
| AGACCCAGCAAGACCTGTGA+AGG | 0.582987 | 4.4:-87582413 | None:intergenic |
| GTTCAAAGATGGGTCCATAG+TGG | 0.583030 | 4.4:+87582918 | MS.gene33355:CDS |
| GTGAAAGTGAATGTAACTAG+TGG | 0.595453 | 4.4:+87582730 | MS.gene33355:CDS |
| TACTTCAAACAACGATGTTG+CGG | 0.596477 | 4.4:+87582030 | MS.gene33355:CDS |
| GGTCTTGGTTTATCTAACGC+TGG | 0.598167 | 4.4:+87582541 | MS.gene33355:CDS |
| AGTGACGAGCCTACTGCTGA+AGG | 0.599077 | 4.4:+87582346 | MS.gene33355:CDS |
| CTTAGACCTCATAAGGACTC+GGG | 0.601169 | 4.4:-87582767 | None:intergenic |
| GGACAGAAACAATGCAGGCA+AGG | 0.604459 | 4.4:+87582051 | MS.gene33355:CDS |
| ATCATTTGTTGTAGACCCGA+AGG | 0.607405 | 4.4:-87582458 | None:intergenic |
| TATCACAGCACACAAGGGTG+GGG | 0.607843 | 4.4:+87582957 | MS.gene33355:CDS |
| TCAATGCAAATGTTGAAAGA+CGG | 0.609075 | 4.4:-87582894 | None:intergenic |
| GCTATCACAGCACACAAGGG+TGG | 0.614339 | 4.4:+87582955 | MS.gene33355:CDS |
| TCGGGTCTACAACAAATGAT+GGG | 0.616965 | 4.4:+87582461 | MS.gene33355:CDS |
| GACGAGCCTACTGCTGAAGG+TGG | 0.621305 | 4.4:+87582349 | MS.gene33355:CDS |
| GTTGCGGACAGAAACAATGC+AGG | 0.625399 | 4.4:+87582046 | MS.gene33355:CDS |
| CTCACAAATATGGAGAAGAA+GGG | 0.630174 | 4.4:+87582838 | MS.gene33355:CDS |
| GACTCCAGAGAACTCTCCCA+AGG | 0.631815 | 4.4:+87582996 | MS.gene33355:CDS |
| AACGCAGCCAGAGAAAGCTA+AGG | 0.639096 | 4.4:+87581955 | MS.gene33355:CDS |
| CAAAGATGGGTCCATAGTGG+AGG | 0.639977 | 4.4:+87582921 | MS.gene33355:CDS |
| GCAAGCGTATACCAGCGAAA+GGG | 0.643938 | 4.4:-87581886 | None:intergenic |
| TTTCAAGAAAGCCAGTGAGG+AGG | 0.650952 | 4.4:+87581802 | MS.gene33355:CDS |
| ACTGAGAACAGTGATAAGAA+CGG | 0.660347 | 4.4:+87582229 | MS.gene33355:CDS |
| GACTTTCAAGAAAGCCAGTG+AGG | 0.667433 | 4.4:+87581799 | MS.gene33355:CDS |
| GATGGAGGTTGGAAGGAACG+TGG | 0.668623 | 4.4:+87582697 | MS.gene33355:CDS |
| GACTTGGCAGTGGATTCAGT+AGG | 0.688140 | 4.4:-87581914 | None:intergenic |
| TGAAACCGGTGAAGAAAACG+AGG | 0.705134 | 4.4:+87582633 | MS.gene33355:CDS |
| ACTGCTATCACAGCACACAA+GGG | 0.723065 | 4.4:+87582952 | MS.gene33355:CDS |
| AGACACTCCTATTGACGACG+AGG | 0.724010 | 4.4:+87581751 | MS.gene33355:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TTTCAATCCAAAAATAGAAC+CGG | - | chr4.4:87582506-87582525 | None:intergenic | 25.0% |
| !!! | TCAGTATTTTTTTCTTCTGT+AGG | - | chr4.4:87582214-87582233 | None:intergenic | 25.0% |
| AAATAGTGAAAGCAAGGATA+AGG | + | chr4.4:87582252-87582271 | MS.gene33355:CDS | 30.0% | |
| AGCTGTTGAAATGATTTGAA+AGG | - | chr4.4:87582376-87582395 | None:intergenic | 30.0% | |
| ATATTTGTGAGCTTCATTTC+AGG | - | chr4.4:87582829-87582848 | None:intergenic | 30.0% | |
| GATTGAAAATGAGGATAAGA+AGG | + | chr4.4:87582144-87582163 | MS.gene33355:CDS | 30.0% | |
| GCTGTTGAAATGATTTGAAA+GGG | - | chr4.4:87582375-87582394 | None:intergenic | 30.0% | |
| TATTTGTGAGCTTCATTTCA+GGG | - | chr4.4:87582828-87582847 | None:intergenic | 30.0% | |
| TCAATGCAAATGTTGAAAGA+CGG | - | chr4.4:87582897-87582916 | None:intergenic | 30.0% | |
| TGAAATGAAGCTCACAAATA+TGG | + | chr4.4:87582828-87582847 | MS.gene33355:CDS | 30.0% | |
| TTAGATAAACCAAGACCTAA+AGG | - | chr4.4:87582538-87582557 | None:intergenic | 30.0% | |
| TTGCATTGAAGTTCAAAGAT+GGG | + | chr4.4:87582908-87582927 | MS.gene33355:CDS | 30.0% | |
| TTGGAGTAGATTTATTCTGT+TGG | - | chr4.4:87581865-87581884 | None:intergenic | 30.0% | |
| TTTGCATTGAAGTTCAAAGA+TGG | + | chr4.4:87582907-87582926 | MS.gene33355:CDS | 30.0% | |
| !!! | GTATTTTTTTCTTCTGTAGG+AGG | - | chr4.4:87582211-87582230 | None:intergenic | 30.0% |
| !!! | TCTTCTTCCTTATTTTCCTT+CGG | + | chr4.4:87582442-87582461 | MS.gene33355:CDS | 30.0% |
| AACTAGTGGAACAGAAAAGA+AGG | + | chr4.4:87582744-87582763 | MS.gene33355:CDS | 35.0% | |
| AATTTCCCTTAGACCTCATA+AGG | - | chr4.4:87582777-87582796 | None:intergenic | 35.0% | |
| ACTGAGAACAGTGATAAGAA+CGG | + | chr4.4:87582229-87582248 | MS.gene33355:CDS | 35.0% | |
| AGACAAAGTAAGTGAAAGCA+AGG | + | chr4.4:87582276-87582295 | MS.gene33355:CDS | 35.0% | |
| AGTAAGCGAAAGCAAAGATA+AGG | + | chr4.4:87582312-87582331 | MS.gene33355:CDS | 35.0% | |
| AGTAAGTGAAAGCAAGGATA+AGG | + | chr4.4:87582282-87582301 | MS.gene33355:CDS | 35.0% | |
| CTCACAAATATGGAGAAGAA+GGG | + | chr4.4:87582838-87582857 | MS.gene33355:CDS | 35.0% | |
| CTTACAGTCGTCAAAGAAAA+GGG | + | chr4.4:87581706-87581725 | MS.gene33355:CDS | 35.0% | |
| GATAATGAACAGAGTAAGGA+TGG | + | chr4.4:87582115-87582134 | MS.gene33355:CDS | 35.0% | |
| GGTAGATAATGAACAGAGTA+AGG | + | chr4.4:87582111-87582130 | MS.gene33355:CDS | 35.0% | |
| GTGAAAGTGAATGTAACTAG+TGG | + | chr4.4:87582730-87582749 | MS.gene33355:CDS | 35.0% | |
| TAAGAAGGAAGTTGCTGATA+AGG | + | chr4.4:87582159-87582178 | MS.gene33355:CDS | 35.0% | |
| TACTTCAAACAACGATGTTG+CGG | + | chr4.4:87582030-87582049 | MS.gene33355:CDS | 35.0% | |
| TGGACGTAAGATTGAAAATG+AGG | + | chr4.4:87582135-87582154 | MS.gene33355:CDS | 35.0% | |
| !! | AACAAATGATGGGTCTACTT+TGG | + | chr4.4:87582471-87582490 | MS.gene33355:CDS | 35.0% |
| !! | ACAAATGATGGGTCTACTTT+GGG | + | chr4.4:87582472-87582491 | MS.gene33355:CDS | 35.0% |
| !! | TGTTACTTTGACCATTCTTC+TGG | - | chr4.4:87581837-87581856 | None:intergenic | 35.0% |
| !!! | CTTCTTCCTTATTTTCCTTC+GGG | + | chr4.4:87582443-87582462 | MS.gene33355:CDS | 35.0% |
| AGCAATCAAAATGCCTTCAC+AGG | + | chr4.4:87582400-87582419 | MS.gene33355:CDS | 40.0% | |
| AGTCTTGAAATCCTCCACTA+TGG | - | chr4.4:87582935-87582954 | None:intergenic | 40.0% | |
| ATAAACCAAGACCTAAAGGC+TGG | - | chr4.4:87582534-87582553 | None:intergenic | 40.0% | |
| CCTTACAGTCGTCAAAGAAA+AGG | + | chr4.4:87581705-87581724 | MS.gene33355:CDS | 40.0% | |
| GAACGGAAATAGTGAAAGCA+AGG | + | chr4.4:87582246-87582265 | MS.gene33355:CDS | 40.0% | |
| GCTCACAAATATGGAGAAGA+AGG | + | chr4.4:87582837-87582856 | MS.gene33355:CDS | 40.0% | |
| TCGGGTCTACAACAAATGAT+GGG | + | chr4.4:87582461-87582480 | MS.gene33355:CDS | 40.0% | |
| TGTAGACCCGAAGGAAAATA+AGG | - | chr4.4:87582452-87582471 | None:intergenic | 40.0% | |
| TTATCTAACGCTGGAAGTTC+TGG | + | chr4.4:87582550-87582569 | MS.gene33355:CDS | 40.0% | |
| TTCGGGTCTACAACAAATGA+TGG | + | chr4.4:87582460-87582479 | MS.gene33355:CDS | 40.0% | |
| ! | CCTTTTCTTTGACGACTGTA+AGG | - | chr4.4:87581708-87581727 | None:intergenic | 40.0% |
| ! | TCTTCATCCTTAGCTTTCTC+TGG | - | chr4.4:87581965-87581984 | None:intergenic | 40.0% |
| ! | TTGTTTGAGTTTGCAGATGG+AGG | + | chr4.4:87582682-87582701 | MS.gene33355:CDS | 40.0% |
| !! | ATCATTTGTTGTAGACCCGA+AGG | - | chr4.4:87582461-87582480 | None:intergenic | 40.0% |
| !! | GTGTTGTTTGAGTTTGCAGA+TGG | + | chr4.4:87582679-87582698 | MS.gene33355:CDS | 40.0% |
| !!! | AGGTTCTTTTTCGATCTCAC+TGG | - | chr4.4:87582191-87582210 | None:intergenic | 40.0% |
| !!! | AGTTCTGGTTTTGGAACATC+AGG | + | chr4.4:87582565-87582584 | MS.gene33355:CDS | 40.0% |
| ACTGCTATCACAGCACACAA+GGG | + | chr4.4:87582952-87582971 | MS.gene33355:CDS | 45.0% | |
| AGTAGTAGCTTCACCAGACT+TGG | - | chr4.4:87581933-87581952 | None:intergenic | 45.0% | |
| ATGGGTCTACTTTGGGTAGT+GGG | + | chr4.4:87582479-87582498 | MS.gene33355:CDS | 45.0% | |
| CAGGAAGTCGTTGTTGAAAC+CGG | + | chr4.4:87582619-87582638 | MS.gene33355:CDS | 45.0% | |
| CCTTAGACCTCATAAGGACT+CGG | - | chr4.4:87582771-87582790 | None:intergenic | 45.0% | |
| CGAGTCCTTATGAGGTCTAA+GGG | + | chr4.4:87582769-87582788 | MS.gene33355:CDS | 45.0% | |
| CTTAGACCTCATAAGGACTC+GGG | - | chr4.4:87582770-87582789 | None:intergenic | 45.0% | |
| GACTTTCAAGAAAGCCAGTG+AGG | + | chr4.4:87581799-87581818 | MS.gene33355:CDS | 45.0% | |
| GGTCTTGGTTTATCTAACGC+TGG | + | chr4.4:87582541-87582560 | MS.gene33355:CDS | 45.0% | |
| GGTTCTTGCAACCAGAAGAA+TGG | + | chr4.4:87581823-87581842 | MS.gene33355:CDS | 45.0% | |
| GTAGATTTGTCCTCAACCTC+AGG | - | chr4.4:87582013-87582032 | None:intergenic | 45.0% | |
| GTTCAAAGATGGGTCCATAG+TGG | + | chr4.4:87582918-87582937 | MS.gene33355:CDS | 45.0% | |
| TCATCTTCCTCGTCGTCAAT+AGG | - | chr4.4:87581761-87581780 | None:intergenic | 45.0% | |
| TGAAACCGGTGAAGAAAACG+AGG | + | chr4.4:87582633-87582652 | MS.gene33355:CDS | 45.0% | |
| TTCCAAGACTGAAACACTGC+AGG | + | chr4.4:87582600-87582619 | MS.gene33355:CDS | 45.0% | |
| TTCCTGCAGTGTTTCAGTCT+TGG | - | chr4.4:87582605-87582624 | None:intergenic | 45.0% | |
| TTGAAACCTGACCAGCCTTT+AGG | + | chr4.4:87582520-87582539 | MS.gene33355:CDS | 45.0% | |
| TTGAGTTTGCAGATGGAGGT+TGG | + | chr4.4:87582686-87582705 | MS.gene33355:CDS | 45.0% | |
| TTTCAAGAAAGCCAGTGAGG+AGG | + | chr4.4:87581802-87581821 | MS.gene33355:CDS | 45.0% | |
| ! | AGTGGGTCCGGTTCTATTTT+TGG | + | chr4.4:87582496-87582515 | MS.gene33355:CDS | 45.0% |
| ! | CACTTCCTCGTTTTCTTCAC+CGG | - | chr4.4:87582641-87582660 | None:intergenic | 45.0% |
| !! | ACTGGCTTTCTTGAAAGTCC+CGG | - | chr4.4:87581798-87581817 | None:intergenic | 45.0% |
| !!! | AACGCTGGAAGTTCTGGTTT+TGG | + | chr4.4:87582556-87582575 | MS.gene33355:CDS | 45.0% |
| AACGCAGCCAGAGAAAGCTA+AGG | + | chr4.4:87581955-87581974 | MS.gene33355:CDS | 50.0% | |
| AAGACGGTCTTTCCCTTCAG+TGG | - | chr4.4:87582881-87582900 | None:intergenic | 50.0% | |
| AATGCCTTCACAGGTCTTGC+TGG | + | chr4.4:87582409-87582428 | MS.gene33355:CDS | 50.0% | |
| ACTGAATCCACTGCCAAGTC+TGG | + | chr4.4:87581917-87581936 | MS.gene33355:CDS | 50.0% | |
| AGACACTCCTATTGACGACG+AGG | + | chr4.4:87581751-87581770 | MS.gene33355:CDS | 50.0% | |
| AGGTTGGAAGGAACGTGGAA+AGG | + | chr4.4:87582702-87582721 | MS.gene33355:CDS | 50.0% | |
| ATGCCTTCACAGGTCTTGCT+GGG | + | chr4.4:87582410-87582429 | MS.gene33355:CDS | 50.0% | |
| CAAAGATGGGTCCATAGTGG+AGG | + | chr4.4:87582921-87582940 | MS.gene33355:CDS | 50.0% | |
| CCGAGTCCTTATGAGGTCTA+AGG | + | chr4.4:87582768-87582787 | MS.gene33355:CDS | 50.0% | |
| CGGTGAAGAAAACGAGGAAG+TGG | + | chr4.4:87582639-87582658 | MS.gene33355:CDS | 50.0% | |
| CGTATACCAGCGAAAGGGTT+TGG | - | chr4.4:87581884-87581903 | None:intergenic | 50.0% | |
| CGTCAAAGAAAAGGGCTGCT+GGG | + | chr4.4:87581714-87581733 | MS.gene33355:CDS | 50.0% | |
| CTATCACAGCACACAAGGGT+GGG | + | chr4.4:87582956-87582975 | MS.gene33355:CDS | 50.0% | |
| CTTGAAAGTCCCGGCTTCAA+AGG | - | chr4.4:87581789-87581808 | None:intergenic | 50.0% | |
| GAAACCTTGGGAGAGTTCTC+TGG | - | chr4.4:87583003-87583022 | None:intergenic | 50.0% | |
| GACTGCTATCACAGCACACA+AGG | + | chr4.4:87582951-87582970 | MS.gene33355:CDS | 50.0% | |
| GAGCGACAGTGACAACTCTA+AGG | + | chr4.4:87582090-87582109 | MS.gene33355:CDS | 50.0% | |
| GATGGGTCTACTTTGGGTAG+TGG | + | chr4.4:87582478-87582497 | MS.gene33355:CDS | 50.0% | |
| GCAAGCGTATACCAGCGAAA+GGG | - | chr4.4:87581889-87581908 | None:intergenic | 50.0% | |
| GGACAGAAACAATGCAGGCA+AGG | + | chr4.4:87582051-87582070 | MS.gene33355:CDS | 50.0% | |
| GGTTGGAAGGAACGTGGAAA+GGG | + | chr4.4:87582703-87582722 | MS.gene33355:CDS | 50.0% | |
| GTTGCGGACAGAAACAATGC+AGG | + | chr4.4:87582046-87582065 | MS.gene33355:CDS | 50.0% | |
| GTTTGCAGATGGAGGTTGGA+AGG | + | chr4.4:87582690-87582709 | MS.gene33355:CDS | 50.0% | |
| TATCACAGCACACAAGGGTG+GGG | + | chr4.4:87582957-87582976 | MS.gene33355:CDS | 50.0% | |
| TCGTCAAAGAAAAGGGCTGC+TGG | + | chr4.4:87581713-87581732 | MS.gene33355:CDS | 50.0% | |
| TCTACTCCAAACCCTTTCGC+TGG | + | chr4.4:87581875-87581894 | MS.gene33355:CDS | 50.0% | |
| ! | ACCTTTGCATGTGCCACTGA+AGG | + | chr4.4:87582865-87582884 | MS.gene33355:CDS | 50.0% |
| ! | CCTTTGCATGTGCCACTGAA+GGG | + | chr4.4:87582866-87582885 | MS.gene33355:CDS | 50.0% |
| ! | GACTTGGCAGTGGATTCAGT+AGG | - | chr4.4:87581917-87581936 | None:intergenic | 50.0% |
| !! | CGTCGTCAATAGGAGTGTCT+CGG | - | chr4.4:87581751-87581770 | None:intergenic | 50.0% |
| !! | GTCGTCAATAGGAGTGTCTC+GGG | - | chr4.4:87581750-87581769 | None:intergenic | 50.0% |
| !! | TCTACTTTGGGTAGTGGGTC+CGG | + | chr4.4:87582484-87582503 | MS.gene33355:CDS | 50.0% |
| AAAGGGCCACCTTCAGCAGT+AGG | - | chr4.4:87582358-87582377 | None:intergenic | 55.0% | |
| ACCTCAGGAGCTTTGCTCTC+TGG | - | chr4.4:87581998-87582017 | None:intergenic | 55.0% | |
| AGAAGGCCCGAGTCCTTATG+AGG | + | chr4.4:87582761-87582780 | MS.gene33355:CDS | 55.0% | |
| AGACCCAGCAAGACCTGTGA+AGG | - | chr4.4:87582416-87582435 | None:intergenic | 55.0% | |
| AGCTTCACCAGACTTGGCAG+TGG | - | chr4.4:87581927-87581946 | None:intergenic | 55.0% | |
| AGTGACGAGCCTACTGCTGA+AGG | + | chr4.4:87582346-87582365 | MS.gene33355:CDS | 55.0% | |
| CAATGCAGGCAAGGAGCTTG+CGG | + | chr4.4:87582060-87582079 | MS.gene33355:CDS | 55.0% | |
| CCCTTCAGTGGCACATGCAA+AGG | - | chr4.4:87582869-87582888 | None:intergenic | 55.0% | |
| CCTGACCAGCCTTTAGGTCT+TGG | + | chr4.4:87582526-87582545 | MS.gene33355:CDS | 55.0% | |
| GACTCCAGAGAACTCTCCCA+AGG | + | chr4.4:87582996-87583015 | MS.gene33355:CDS | 55.0% | |
| GAGCAAAGCTCCTGAGGTTG+AGG | + | chr4.4:87582000-87582019 | MS.gene33355:CDS | 55.0% | |
| GATGGAGGTTGGAAGGAACG+TGG | + | chr4.4:87582697-87582716 | MS.gene33355:CDS | 55.0% | |
| GCTATCACAGCACACAAGGG+TGG | + | chr4.4:87582955-87582974 | MS.gene33355:CDS | 55.0% | |
| GGCAAGCGTATACCAGCGAA+AGG | - | chr4.4:87581890-87581909 | None:intergenic | 55.0% | |
| GGTTGCAAGAACCTCCTCAC+TGG | - | chr4.4:87581816-87581835 | None:intergenic | 55.0% | |
| TTCACAGGTCTTGCTGGGTC+TGG | + | chr4.4:87582415-87582434 | MS.gene33355:CDS | 55.0% | |
| ! | CCAAGACCTAAAGGCTGGTC+AGG | - | chr4.4:87582529-87582548 | None:intergenic | 55.0% |
| ! | GCAGTGGATTCAGTAGGAGC+AGG | - | chr4.4:87581911-87581930 | None:intergenic | 55.0% |
| !! | ATGACGCTGCCTTTGAAGCC+GGG | + | chr4.4:87581777-87581796 | MS.gene33355:CDS | 55.0% |
| !! | GATGACGCTGCCTTTGAAGC+CGG | + | chr4.4:87581776-87581795 | MS.gene33355:CDS | 55.0% |
| AGGCAAGGAGCTTGCGGAGA+AGG | + | chr4.4:87582066-87582085 | MS.gene33355:CDS | 60.0% | |
| GACGAGCCTACTGCTGAAGG+TGG | + | chr4.4:87582349-87582368 | MS.gene33355:CDS | 60.0% | |
| GCCAGAGAGCAAAGCTCCTG+AGG | + | chr4.4:87581994-87582013 | MS.gene33355:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 87581686 | 87583032 | 87581686 | ID=MS.gene33355 |
| chr4.4 | mRNA | 87581686 | 87583032 | 87581686 | ID=MS.gene33355.t1;Parent=MS.gene33355 |
| chr4.4 | exon | 87581686 | 87583032 | 87581686 | ID=MS.gene33355.t1.exon1;Parent=MS.gene33355.t1 |
| chr4.4 | CDS | 87581686 | 87583032 | 87581686 | ID=cds.MS.gene33355.t1;Parent=MS.gene33355.t1 |
| Gene Sequence |
| Protein sequence |
