Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33362.t1 | RHN58616.1 | 93.5 | 1286 | 82 | 1 | 1 | 1286 | 1 | 1285 | 0.00E+00 | 2178.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33362.t1 | Q9S7I0 | 30.0 | 1328 | 654 | 40 | 64 | 1253 | 76 | 1265 | 1.1e-96 | 356.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33362.t1 | A0A396HZ52 | 93.5 | 1286 | 82 | 1 | 1 | 1286 | 1 | 1285 | 0.0e+00 | 2178.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050156 | MS.gene33362 | 0.850119 | 2.09E-60 | -1.69E-46 |
MS.gene052611 | MS.gene33362 | 0.800074 | 1.71E-48 | -1.69E-46 |
MS.gene052863 | MS.gene33362 | 0.82617 | 3.14E-54 | -1.69E-46 |
MS.gene053145 | MS.gene33362 | 0.815337 | 9.74E-52 | -1.69E-46 |
MS.gene055818 | MS.gene33362 | 0.837036 | 6.59E-57 | -1.69E-46 |
MS.gene056542 | MS.gene33362 | 0.810178 | 1.31E-50 | -1.69E-46 |
MS.gene056543 | MS.gene33362 | 0.811877 | 5.62E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33362.t1 | MTR_4g012000 | 95.199 | 1208 | 57 | 1 | 84 | 1291 | 35 | 1241 | 0.0 | 2348 |
MS.gene33362.t1 | MTR_4g012000 | 95.179 | 1203 | 57 | 1 | 84 | 1286 | 35 | 1236 | 0.0 | 2333 |
MS.gene33362.t1 | MTR_4g012000 | 95.520 | 1049 | 46 | 1 | 243 | 1291 | 1 | 1048 | 0.0 | 2042 |
MS.gene33362.t1 | MTR_4g012000 | 95.498 | 1044 | 46 | 1 | 243 | 1286 | 1 | 1043 | 0.0 | 2029 |
MS.gene33362.t1 | MTR_4g124190 | 42.000 | 100 | 57 | 1 | 1098 | 1196 | 31 | 130 | 6.80e-16 | 77.8 |
MS.gene33362.t1 | MTR_7g086830 | 38.211 | 123 | 61 | 2 | 1100 | 1210 | 8 | 127 | 5.08e-15 | 75.1 |
MS.gene33362.t1 | MTR_2g045280 | 43.000 | 100 | 56 | 1 | 1098 | 1196 | 45 | 144 | 1.06e-14 | 74.7 |
MS.gene33362.t1 | MTR_1g081550 | 37.000 | 100 | 62 | 1 | 1098 | 1196 | 14 | 113 | 3.41e-13 | 69.3 |
MS.gene33362.t1 | MTR_1g081420 | 38.095 | 105 | 61 | 3 | 1102 | 1205 | 23 | 124 | 3.16e-12 | 68.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33362.t1 | AT1G68720 | 42.206 | 680 | 283 | 19 | 684 | 1291 | 666 | 1307 | 2.79e-121 | 409 |
MS.gene33362.t1 | AT5G28050 | 43.564 | 101 | 56 | 1 | 1097 | 1196 | 29 | 129 | 1.07e-16 | 80.1 |
MS.gene33362.t1 | AT1G48175 | 32.143 | 168 | 86 | 4 | 1101 | 1256 | 12 | 163 | 1.14e-16 | 80.1 |
MS.gene33362.t1 | AT1G48175 | 32.143 | 168 | 86 | 4 | 1101 | 1256 | 12 | 163 | 1.14e-16 | 80.1 |
MS.gene33362.t1 | AT5G28050 | 43.564 | 101 | 56 | 1 | 1097 | 1196 | 48 | 148 | 1.34e-16 | 80.5 |
MS.gene33362.t1 | AT5G28050 | 43.564 | 101 | 56 | 1 | 1097 | 1196 | 134 | 234 | 3.08e-16 | 81.3 |
MS.gene33362.t1 | AT3G05300 | 42.683 | 82 | 46 | 1 | 1137 | 1218 | 1 | 81 | 1.38e-11 | 63.2 |
MS.gene33362.t1 | AT1G48175 | 29.936 | 157 | 82 | 4 | 1112 | 1256 | 8 | 148 | 1.81e-11 | 64.3 |
MS.gene33362.t1 | AT1G48175 | 29.936 | 157 | 82 | 4 | 1112 | 1256 | 8 | 148 | 1.81e-11 | 64.3 |
MS.gene33362.t1 | AT1G48175 | 29.936 | 157 | 82 | 4 | 1112 | 1256 | 8 | 148 | 1.81e-11 | 64.3 |
MS.gene33362.t1 | AT1G48175 | 29.936 | 157 | 82 | 4 | 1112 | 1256 | 8 | 148 | 1.81e-11 | 64.3 |
Find 260 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGCCATTCCACTGGGTTTC+TGG | 0.034322 | 4.2:+88162885 | MS.gene33362:CDS |
TAAAATTTCCTGTATAATTT+TGG | 0.047926 | 4.2:-88161919 | None:intergenic |
CCAAATATCACCGGCCTTTC+TGG | 0.057133 | 4.2:-88163739 | None:intergenic |
GATCCACTCTCCAATTTATT+TGG | 0.133180 | 4.2:-88163321 | None:intergenic |
GCTGGTTCCTCCGCTTCTTC+TGG | 0.151566 | 4.2:+88163084 | MS.gene33362:CDS |
GCTGACTGAGGGAACCTTTC+AGG | 0.177757 | 4.2:+88161397 | MS.gene33362:CDS |
GTAAAGCCTTGTCTTCTAAA+TGG | 0.191983 | 4.2:+88160591 | MS.gene33362:CDS |
ATCATCTTCTCCAAATAAAT+TGG | 0.201367 | 4.2:+88163311 | MS.gene33362:CDS |
GGAGGTATATCCCTTGCTTC+TGG | 0.206332 | 4.2:-88168092 | None:intergenic |
CCAGAAAGGCCGGTGATATT+TGG | 0.211490 | 4.2:+88163739 | MS.gene33362:CDS |
CAAATTATTTATCTTCTTCT+TGG | 0.226624 | 4.2:-88160952 | None:intergenic |
ATCAGCTCCAAGAAGCTTAT+TGG | 0.248076 | 4.2:-88167148 | None:intergenic |
ATGACTTATCACTTTCATAT+TGG | 0.251435 | 4.2:-88162615 | None:intergenic |
CAGAGAGAGACATTTCAATT+TGG | 0.255317 | 4.2:+88160977 | MS.gene33362:CDS |
GACAGTGAGACATGGCATTC+TGG | 0.256070 | 4.2:+88163141 | MS.gene33362:CDS |
TACTGTTCTCGGGTTCCTTA+TGG | 0.259754 | 4.2:+88160681 | MS.gene33362:CDS |
CTGCTCAAGTTCAACATTAT+AGG | 0.268636 | 4.2:-88163673 | None:intergenic |
ATTGAGACTACTTTATTATC+AGG | 0.274292 | 4.2:+88161644 | MS.gene33362:CDS |
GTTCATGAAGGAAGCACTTT+TGG | 0.289222 | 4.2:+88163713 | MS.gene33362:CDS |
TGACTTATCACTTTCATATT+GGG | 0.291342 | 4.2:-88162614 | None:intergenic |
TTTGCAGCTGACACCATATA+TGG | 0.292585 | 4.2:-88160439 | None:intergenic |
CGTGGAAGTGCAGCATAATA+TGG | 0.294309 | 4.2:+88161193 | MS.gene33362:CDS |
AAACGTTGTGCACCTTCTTT+TGG | 0.301764 | 4.2:-88161307 | None:intergenic |
TTCTTGGAGCTGATGGCAGC+TGG | 0.305531 | 4.2:+88167157 | MS.gene33362:CDS |
GATTTGAAAGTCACTACTTC+TGG | 0.311125 | 4.2:+88163408 | MS.gene33362:CDS |
GTTCCTTATGGTCTTGTTAG+AGG | 0.320137 | 4.2:+88160693 | MS.gene33362:CDS |
CCAAATCCATTATCTATTAG+AGG | 0.320630 | 4.2:+88163450 | MS.gene33362:CDS |
CAATGGTCTTCTCTCCTTTA+CGG | 0.322163 | 4.2:-88162042 | None:intergenic |
CGAAGACACATTCTTCGATT+TGG | 0.323600 | 4.2:-88160913 | None:intergenic |
GAAGGATGATGGGTAGTAAT+AGG | 0.323794 | 4.2:-88168239 | None:intergenic |
AGCAGGACTTCTTCCGGAAT+TGG | 0.326191 | 4.2:-88162572 | None:intergenic |
GATATCAGAAACACGTTTGC+AGG | 0.328095 | 4.2:+88161823 | MS.gene33362:CDS |
GAGCTGATGGCAGCTGGGTT+AGG | 0.329655 | 4.2:+88167163 | MS.gene33362:CDS |
CCTCTAATAGATAATGGATT+TGG | 0.332403 | 4.2:-88163450 | None:intergenic |
AGCCATTCCACTGGGTTTCT+GGG | 0.342228 | 4.2:+88162886 | MS.gene33362:CDS |
CGGCATCACTGATTCAGTTC+TGG | 0.343595 | 4.2:-88163520 | None:intergenic |
GAAGCTTCAAGGTAGATATC+AGG | 0.345357 | 4.2:-88162523 | None:intergenic |
TTGAAATCAAAGAAAACATT+TGG | 0.345378 | 4.2:+88161779 | MS.gene33362:CDS |
AAGAAGGGTTCCTAGATCTT+TGG | 0.348751 | 4.2:-88162447 | None:intergenic |
GAGTAGCCATTGAAAGATAA+AGG | 0.354654 | 4.2:-88160471 | None:intergenic |
GCAGTTTCATTGTTGATCTC+TGG | 0.354759 | 4.2:-88162982 | None:intergenic |
TTTACGATTTCTGCTGCAAT+AGG | 0.356264 | 4.2:-88163477 | None:intergenic |
CAGAAAGGCCGGTGATATTT+GGG | 0.361207 | 4.2:+88163740 | MS.gene33362:CDS |
CTGGTTCCTCCGCTTCTTCT+GGG | 0.362402 | 4.2:+88163085 | MS.gene33362:CDS |
TCTGCTTTGTATGCCAATTC+CGG | 0.363239 | 4.2:+88162559 | MS.gene33362:CDS |
TGATTTCAAACTTTCTGTTC+CGG | 0.364465 | 4.2:-88161765 | None:intergenic |
ATTTAGAAGACAAGGCTTTA+CGG | 0.371511 | 4.2:-88160589 | None:intergenic |
AGTTGAAACTCTACCCATTT+GGG | 0.372217 | 4.2:-88162470 | None:intergenic |
GTGCGCTGGTGCCATTCTTC+AGG | 0.375027 | 4.2:+88167095 | MS.gene33362:CDS |
TTAAGTATGATATTTCTTCC+TGG | 0.378194 | 4.2:-88162174 | None:intergenic |
TTTAGAAGACAAGGCTTTAC+GGG | 0.378920 | 4.2:-88160588 | None:intergenic |
GACAAACATGAAAAGTTTGT+TGG | 0.378937 | 4.2:+88161728 | MS.gene33362:CDS |
AAGTAGAAGAAGCAGAATAA+AGG | 0.379072 | 4.2:+88160764 | MS.gene33362:CDS |
GGAGCTCCCAATAAGCTTCT+TGG | 0.384691 | 4.2:+88167141 | MS.gene33362:CDS |
TGAACATGTCAGCACTTTAT+CGG | 0.387097 | 4.2:+88162270 | MS.gene33362:CDS |
CACTTGGTGCAGATATTGAT+TGG | 0.397038 | 4.2:+88161348 | MS.gene33362:CDS |
GGTTGCCCTCTAATAGATAA+TGG | 0.400040 | 4.2:-88163456 | None:intergenic |
TCAGCTCCAAGAAGCTTATT+GGG | 0.401024 | 4.2:-88167147 | None:intergenic |
ATGAGTTTGTGGAGAGGGTC+AGG | 0.403422 | 4.2:+88162722 | MS.gene33362:CDS |
GAGTTGAAACTCTACCCATT+TGG | 0.409562 | 4.2:-88162471 | None:intergenic |
GGGACACTTTCTCCTCCATC+AGG | 0.412882 | 4.2:-88168071 | None:intergenic |
TAGGAACCCTTCTTCCCAAA+TGG | 0.415037 | 4.2:+88162456 | MS.gene33362:CDS |
AAACCAATTGTTAAAAGAAC+AGG | 0.415902 | 4.2:+88163006 | MS.gene33362:CDS |
TAAAGCCTTGTCTTCTAAAT+GGG | 0.417559 | 4.2:+88160592 | MS.gene33362:CDS |
GGATCTACAATACATGAATC+TGG | 0.417870 | 4.2:+88161461 | MS.gene33362:CDS |
GAGTTCTCCTCCTATCAGTT+TGG | 0.418358 | 4.2:-88162222 | None:intergenic |
TCTTCATATGCACAAGAGTA+TGG | 0.419373 | 4.2:+88161611 | MS.gene33362:CDS |
TCGTTCCCTTTATCTTTCAA+TGG | 0.419477 | 4.2:+88160465 | MS.gene33362:CDS |
TCAGTCTTCACTGGAGCAAC+GGG | 0.420309 | 4.2:-88163552 | None:intergenic |
CAAGAGATAGGTTTGATGAC+TGG | 0.420678 | 4.2:+88163643 | MS.gene33362:CDS |
AGACACATCTCCCTCACTTT+GGG | 0.420698 | 4.2:-88163244 | None:intergenic |
GAACCCTGTGCAATGTGCGC+TGG | 0.420731 | 4.2:+88167081 | MS.gene33362:CDS |
GGGCAGGAGCGTGAGGAAAC+TGG | 0.421629 | 4.2:+88163162 | MS.gene33362:CDS |
GTCTCACTGTCAGATTTGTT+TGG | 0.423050 | 4.2:-88163129 | None:intergenic |
GGTGGCAAGGAAGGGAGTCT+TGG | 0.423082 | 4.2:+88161800 | MS.gene33362:CDS |
CATTTCGTCAGAAATTCCTT+TGG | 0.426633 | 4.2:-88162911 | None:intergenic |
GTGGCAAGGAAGGGAGTCTT+GGG | 0.426652 | 4.2:+88161801 | MS.gene33362:CDS |
CTAATGACCACCAAAGATCT+AGG | 0.426832 | 4.2:+88162437 | MS.gene33362:CDS |
TCTGGAGTCATGAAAATAGA+AGG | 0.427451 | 4.2:-88162646 | None:intergenic |
TGCACAAGAACAGCACCAAC+AGG | 0.427907 | 4.2:-88163768 | None:intergenic |
TTCCAGAGTAGAAGAGTTAC+GGG | 0.428597 | 4.2:+88163898 | MS.gene33362:intron |
GTGAAAACCTGTACTGTTCT+CGG | 0.429415 | 4.2:+88160670 | MS.gene33362:CDS |
ACAGTGAGACATGGCATTCT+GGG | 0.429559 | 4.2:+88163142 | MS.gene33362:CDS |
GAGGTATATCCCTTGCTTCT+GGG | 0.430561 | 4.2:-88168091 | None:intergenic |
GTGATACTTCAGAAAACAGT+TGG | 0.433062 | 4.2:-88162090 | None:intergenic |
TGGAACGGGTGAACTGGTGC+AGG | 0.433871 | 4.2:-88168113 | None:intergenic |
TCCGCTTCTTCTGGGAGATC+AGG | 0.436796 | 4.2:+88163093 | MS.gene33362:CDS |
AAAGTCAGGTTTCAAGAGAT+AGG | 0.438920 | 4.2:+88163631 | MS.gene33362:CDS |
TGAGTAACTTGGAAGGATGA+TGG | 0.439700 | 4.2:-88168250 | None:intergenic |
GAGAGTGGATCAACATCAAT+AGG | 0.441001 | 4.2:+88163333 | MS.gene33362:CDS |
AAACATAGCAGGACTTCTTC+CGG | 0.441312 | 4.2:-88162578 | None:intergenic |
CTTTGGGTATAATGAGTACC+TGG | 0.444332 | 4.2:-88163228 | None:intergenic |
TCTGAAGTATCACAAGTTCA+TGG | 0.445560 | 4.2:+88162100 | MS.gene33362:CDS |
ACTCATGTTGAACAAACTGC+TGG | 0.447590 | 4.2:+88162490 | MS.gene33362:CDS |
AGCCACTTTCTGAAGCTTCA+AGG | 0.447809 | 4.2:-88162534 | None:intergenic |
CTTCTTGGCTTCCGTTCTGT+TGG | 0.449843 | 4.2:-88160937 | None:intergenic |
TTTGAGTTCTGCTCGGGGAG+TGG | 0.451716 | 4.2:+88162009 | MS.gene33362:CDS |
TAGATGAGTTGGATATTTCA+AGG | 0.454189 | 4.2:-88161694 | None:intergenic |
TTCCTCTCCAGCAGCATATG+AGG | 0.455351 | 4.2:-88163358 | None:intergenic |
CTGAAAGGACCTCTGATACT+AGG | 0.455541 | 4.2:+88161954 | MS.gene33362:CDS |
CGAAATAAATGACACTGAAA+AGG | 0.456577 | 4.2:+88161076 | MS.gene33362:CDS |
AGGCTTTACGGGTACTCTAT+AGG | 0.457317 | 4.2:-88160577 | None:intergenic |
ATACTTAAGTTCACATGAAA+GGG | 0.458228 | 4.2:+88162189 | MS.gene33362:CDS |
GTCTGACACTAAAATATTGA+AGG | 0.460948 | 4.2:+88163263 | MS.gene33362:CDS |
TTCGGATGGAACGGGTGAAC+TGG | 0.463634 | 4.2:-88168119 | None:intergenic |
AGTGCAGCATAATATGGGTT+TGG | 0.463901 | 4.2:+88161199 | MS.gene33362:CDS |
AACAAGGCATACATTCAAAC+AGG | 0.464243 | 4.2:+88161569 | MS.gene33362:CDS |
CAGACACATCTCCCTCACTT+TGG | 0.465880 | 4.2:-88163245 | None:intergenic |
GAAGTTTCAGCGGAAAAGTC+AGG | 0.466303 | 4.2:+88163617 | MS.gene33362:CDS |
AAAGGAAAACATATTGAAGT+TGG | 0.467406 | 4.2:+88163288 | MS.gene33362:CDS |
CAGAAACCCAGTGGAATGGC+TGG | 0.470507 | 4.2:-88162884 | None:intergenic |
AGAAGCTCCCAAAATTATAC+AGG | 0.472572 | 4.2:+88161911 | MS.gene33362:CDS |
GCAGCAGAAATCGTAAATAT+CGG | 0.473573 | 4.2:+88163483 | MS.gene33362:CDS |
CTTCAAAACATCTCAACTCA+TGG | 0.474375 | 4.2:+88163960 | MS.gene33362:CDS |
ACTCTACCCATTTGGGAAGA+AGG | 0.474493 | 4.2:-88162463 | None:intergenic |
TTCAGTCTTCACTGGAGCAA+CGG | 0.475325 | 4.2:-88163553 | None:intergenic |
GTTCTTCCCAAACTGAAGAA+AGG | 0.477710 | 4.2:+88162401 | MS.gene33362:CDS |
GTTCCAGAGTAGAAGAGTTA+CGG | 0.478012 | 4.2:+88163897 | MS.gene33362:intron |
GGCACCAGCGCACATTGCAC+AGG | 0.478111 | 4.2:-88167085 | None:intergenic |
CTCTACCCATTTGGGAAGAA+GGG | 0.479101 | 4.2:-88162462 | None:intergenic |
ATGACTCCAGAGGATGTGCT+TGG | 0.479634 | 4.2:+88162658 | MS.gene33362:CDS |
ACGTAAAAGAAGAATTCAAC+AGG | 0.480410 | 4.2:+88161273 | MS.gene33362:CDS |
AGTAGCCATTGAAAGATAAA+GGG | 0.482444 | 4.2:-88160470 | None:intergenic |
AAAACATTTGGTGGCAAGGA+AGG | 0.482971 | 4.2:+88161791 | MS.gene33362:CDS |
CACGAGTCCAGCCATTCCAC+TGG | 0.483088 | 4.2:+88162877 | MS.gene33362:CDS |
ATAATCAGATGAACAGTTCA+AGG | 0.483218 | 4.2:+88162818 | MS.gene33362:CDS |
GCATTCTCTTCTCAAGTCGA+TGG | 0.486308 | 4.2:-88161054 | None:intergenic |
TACCTTGAAGCTTCAGAAAG+TGG | 0.487542 | 4.2:+88162532 | MS.gene33362:CDS |
CTCTATTACATCCTCTGTTG+TGG | 0.488326 | 4.2:-88161888 | None:intergenic |
TGTGGTATCAGTTTCCTGAA+AGG | 0.488618 | 4.2:-88161411 | None:intergenic |
TGATGGGTAGTAATAGGAAG+TGG | 0.489523 | 4.2:-88168233 | None:intergenic |
CTGATATTGTTCAATTACGT+TGG | 0.490682 | 4.2:+88163052 | MS.gene33362:CDS |
GAAAAGGAAGCCTTTACAAA+AGG | 0.490715 | 4.2:+88161092 | MS.gene33362:CDS |
ATAGGCACCTCATATGCTGC+TGG | 0.491367 | 4.2:+88163351 | MS.gene33362:CDS |
CCAGACATTTCAGTCTTCAC+TGG | 0.493135 | 4.2:-88163561 | None:intergenic |
CAACAAGAGATAGAAGTTGC+TGG | 0.493862 | 4.2:+88162769 | MS.gene33362:CDS |
AAATCAAAGAAAACATTTGG+TGG | 0.494976 | 4.2:+88161782 | MS.gene33362:CDS |
AAGAGATAGGTTTGATGACT+GGG | 0.495697 | 4.2:+88163644 | MS.gene33362:CDS |
AGGAACCCTTCTTCCCAAAT+GGG | 0.497339 | 4.2:+88162457 | MS.gene33362:CDS |
CTGAAGTATCACAAGTTCAT+GGG | 0.498078 | 4.2:+88162101 | MS.gene33362:CDS |
ACAGTTTGTTGATGAGTTTG+TGG | 0.505305 | 4.2:+88162711 | MS.gene33362:CDS |
TGTCAAATCTTTCATACCAT+AGG | 0.505420 | 4.2:-88160497 | None:intergenic |
ATCTACTCTTGCCTGAAGAA+TGG | 0.505447 | 4.2:-88167106 | None:intergenic |
GCTGAACCAAGCACATCCTC+TGG | 0.505585 | 4.2:-88162664 | None:intergenic |
GATTCATCAGAAGCAAATGA+AGG | 0.505613 | 4.2:-88160837 | None:intergenic |
TGAAAACCTGTACTGTTCTC+GGG | 0.510047 | 4.2:+88160671 | MS.gene33362:CDS |
TGAGACATGGCATTCTGGGC+AGG | 0.511222 | 4.2:+88163146 | MS.gene33362:CDS |
GAACCTCTAACAAGACCATA+AGG | 0.511250 | 4.2:-88160696 | None:intergenic |
TGTTGATGAGTTTGTGGAGA+GGG | 0.511372 | 4.2:+88162717 | MS.gene33362:CDS |
TGGTTCAGCTAATCGTTTCG+AGG | 0.511607 | 4.2:+88162678 | MS.gene33362:CDS |
TTGTATCTTATTGAGTAACT+TGG | 0.511828 | 4.2:-88168261 | None:intergenic |
AAGGAATTTCTGACGAAATG+TGG | 0.513900 | 4.2:+88162914 | MS.gene33362:CDS |
CTCCACAGCTCACGCAGAGA+TGG | 0.514629 | 4.2:+88163922 | MS.gene33362:CDS |
AATAAGCTTCTTGGAGCTGA+TGG | 0.515184 | 4.2:+88167150 | MS.gene33362:CDS |
TCTTGGAGCTGATGGCAGCT+GGG | 0.516527 | 4.2:+88167158 | MS.gene33362:CDS |
CACCAGTATATGCATCGAAA+AGG | 0.519469 | 4.2:+88161440 | MS.gene33362:CDS |
GTGGAAGTGCAGCATAATAT+GGG | 0.520005 | 4.2:+88161194 | MS.gene33362:CDS |
CTCAACCCATTTAGAAGACA+AGG | 0.524520 | 4.2:-88160597 | None:intergenic |
GATGTAAAAGAACCATCTGT+TGG | 0.526719 | 4.2:+88162937 | MS.gene33362:CDS |
CATACTTAAGTTCACATGAA+AGG | 0.528749 | 4.2:+88162188 | MS.gene33362:CDS |
TCTGGCTCAGACAGAAAAGA+TGG | 0.529278 | 4.2:+88163579 | MS.gene33362:CDS |
CGCCCAGAAACCCAGTGGAA+TGG | 0.529461 | 4.2:-88162888 | None:intergenic |
CACGTCACTCTCGAAATCTC+CGG | 0.530840 | 4.2:-88161174 | None:intergenic |
AAGGGTTCCTAGATCTTTGG+TGG | 0.531076 | 4.2:-88162444 | None:intergenic |
AAGAGTAGATACTGTTGTGT+GGG | 0.533292 | 4.2:+88167119 | MS.gene33362:CDS |
TCTTATTACACACTATCGTC+CGG | 0.533347 | 4.2:+88161155 | MS.gene33362:CDS |
TTCTTCAATTGTCAGCAACT+AGG | 0.535014 | 4.2:+88160631 | MS.gene33362:CDS |
ATACACGACTCCAAACTGAT+AGG | 0.536435 | 4.2:+88162212 | MS.gene33362:CDS |
AAAGAAAACATTTGGTGGCA+AGG | 0.537125 | 4.2:+88161787 | MS.gene33362:CDS |
TGATACTTCAGAAAACAGTT+GGG | 0.538878 | 4.2:-88162089 | None:intergenic |
ATGTAAAAGAACCATCTGTT+GGG | 0.538984 | 4.2:+88162938 | MS.gene33362:CDS |
AGAAGTTGCTGGAACAAAGT+TGG | 0.540354 | 4.2:+88162780 | MS.gene33362:CDS |
TCAATGGCTACTCGAACCTA+TGG | 0.541788 | 4.2:+88160481 | MS.gene33362:CDS |
GACCATCTCTGCGTGAGCTG+TGG | 0.543454 | 4.2:-88163924 | None:intergenic |
GAGTAACTTGGAAGGATGAT+GGG | 0.545083 | 4.2:-88168249 | None:intergenic |
CATATACTGGTGCTCTCTTG+TGG | 0.545303 | 4.2:-88161429 | None:intergenic |
GAGAAAGTGTCCCAGAAGCA+AGG | 0.548756 | 4.2:+88168081 | MS.gene33362:CDS |
TTTGCTCAGCCTCACAGAAA+GGG | 0.550252 | 4.2:+88160796 | MS.gene33362:CDS |
GTTTGCTCAGCCTCACAGAA+AGG | 0.551794 | 4.2:+88160795 | MS.gene33362:CDS |
AGGAATTTCTGACGAAATGT+GGG | 0.551801 | 4.2:+88162915 | MS.gene33362:CDS |
GTTGGTTCTACTTCTACCAC+CGG | 0.552542 | 4.2:+88161746 | MS.gene33362:CDS |
TGATACTAGGATGAAGAACA+TGG | 0.554109 | 4.2:+88161967 | MS.gene33362:CDS |
ACTGGGTTTCTGGGCGCCAA+AGG | 0.556203 | 4.2:+88162895 | MS.gene33362:CDS |
TTAAAATCGAAGACTCTGAA+AGG | 0.559052 | 4.2:+88161939 | MS.gene33362:CDS |
AGAAAGTGTCCCAGAAGCAA+GGG | 0.563085 | 4.2:+88168082 | MS.gene33362:CDS |
CACCTCATATGCTGCTGGAG+AGG | 0.567130 | 4.2:+88163356 | MS.gene33362:CDS |
GTGGAGTTGCAACACCGTAA+AGG | 0.568952 | 4.2:+88162028 | MS.gene33362:CDS |
CAAATCCATTATCTATTAGA+GGG | 0.569531 | 4.2:+88163451 | MS.gene33362:CDS |
TTACGTTGGAGTTCACGTGC+TGG | 0.569543 | 4.2:+88163066 | MS.gene33362:CDS |
CTCATGTTGAACAAACTGCT+GGG | 0.569901 | 4.2:+88162491 | MS.gene33362:CDS |
AAACATTTGGTGGCAAGGAA+GGG | 0.570464 | 4.2:+88161792 | MS.gene33362:CDS |
AACTGATGAATTGTTCATGA+AGG | 0.571657 | 4.2:+88163701 | MS.gene33362:CDS |
TCTGTCTCTATCATGTGCAA+TGG | 0.573889 | 4.2:-88162059 | None:intergenic |
AAGGAACCCGAGAACAGTAC+AGG | 0.575805 | 4.2:-88160677 | None:intergenic |
ACCTGATCTCCCAGAAGAAG+CGG | 0.576145 | 4.2:-88163094 | None:intergenic |
TAAAACTAGTGTGAAGAACC+AGG | 0.578257 | 4.2:+88162156 | MS.gene33362:CDS |
GGTGCTGTTCTTGTGCAGCA+TGG | 0.578459 | 4.2:+88163774 | MS.gene33362:CDS |
AAGCTTCAAGGTAGATATCA+GGG | 0.580862 | 4.2:-88162522 | None:intergenic |
CCAGTGAAGACTGAAATGTC+TGG | 0.582287 | 4.2:+88163561 | MS.gene33362:CDS |
ATCAGAAAGCATACCCCACA+TGG | 0.582579 | 4.2:-88163034 | None:intergenic |
CATGTCAGCACTTTATCGGA+AGG | 0.584075 | 4.2:+88162274 | MS.gene33362:CDS |
ACGAGTCCAGCCATTCCACT+GGG | 0.584515 | 4.2:+88162878 | MS.gene33362:CDS |
CTTGTCTTCTAAATGGGTTG+AGG | 0.585359 | 4.2:+88160598 | MS.gene33362:CDS |
TTCAATTGTCAGCAACTAGG+AGG | 0.587865 | 4.2:+88160634 | MS.gene33362:CDS |
GCAAAGAGTTGACCAAAAGA+AGG | 0.588737 | 4.2:+88161295 | MS.gene33362:CDS |
TTATCAGAAGTCATGGCTTG+TGG | 0.589431 | 4.2:-88163198 | None:intergenic |
ATGAATTATCTTCCTCGCTG+TGG | 0.592389 | 4.2:-88161517 | None:intergenic |
ATTCATCAGAAGCAAATGAA+GGG | 0.592633 | 4.2:-88160836 | None:intergenic |
GTTCTTCATCCTAGTATCAG+AGG | 0.593005 | 4.2:-88161963 | None:intergenic |
TGTGATCCTGAAAACATAGC+AGG | 0.595241 | 4.2:-88162589 | None:intergenic |
CTGATTATCCTCAACATCAG+AGG | 0.600356 | 4.2:-88162803 | None:intergenic |
GATATTTGGGAGGTCCCTGT+TGG | 0.601167 | 4.2:+88163753 | MS.gene33362:CDS |
AAAGAACCATCTGTTGGGCA+TGG | 0.602087 | 4.2:+88162943 | MS.gene33362:CDS |
GGATGAAGCAAACCGTGTGG+AGG | 0.603733 | 4.2:+88161247 | MS.gene33362:CDS |
GCATTCTGGGCAGGAGCGTG+AGG | 0.605511 | 4.2:+88163155 | MS.gene33362:CDS |
ATCTTATTGAGTAACTTGGA+AGG | 0.606946 | 4.2:-88168257 | None:intergenic |
GATAGACCATGCCCAACAGA+TGG | 0.607055 | 4.2:-88162949 | None:intergenic |
TCTTTCTCTCCCTTTCTGTG+AGG | 0.607239 | 4.2:-88160805 | None:intergenic |
TACTCATTATACCCAAAGTG+AGG | 0.608815 | 4.2:+88163233 | MS.gene33362:CDS |
GATGAAGCAAACCGTGTGGA+GGG | 0.609368 | 4.2:+88161248 | MS.gene33362:CDS |
CGGAGATTTCGAGAGTGACG+TGG | 0.613318 | 4.2:+88161175 | MS.gene33362:CDS |
TTCTCTTCTCAAGTCGATGG+AGG | 0.615193 | 4.2:-88161051 | None:intergenic |
TCAAACTGTTTGTCATGCCG+TGG | 0.615348 | 4.2:+88160528 | MS.gene33362:CDS |
TGAAACAACGGAAGTTTCAG+CGG | 0.619213 | 4.2:+88163607 | MS.gene33362:CDS |
ACTAAAATATTGAAGGACAA+AGG | 0.619506 | 4.2:+88163270 | MS.gene33362:CDS |
CACGACTCCAAACTGATAGG+AGG | 0.620059 | 4.2:+88162215 | MS.gene33362:CDS |
CAGAGTGCTCAACATAGCAA+AGG | 0.621328 | 4.2:+88162244 | MS.gene33362:CDS |
AAGAACAGGAAGGTCCATGT+GGG | 0.623543 | 4.2:+88163020 | MS.gene33362:CDS |
GCACCAGCGCACATTGCACA+GGG | 0.624348 | 4.2:-88167084 | None:intergenic |
GGACACTTTCTCCTCCATCA+GGG | 0.625006 | 4.2:-88168070 | None:intergenic |
AGGGACCTCCCAAATATCAC+CGG | 0.626986 | 4.2:-88163748 | None:intergenic |
TCTCCAAATAAATTGGAGAG+TGG | 0.628288 | 4.2:+88163318 | MS.gene33362:CDS |
CAAGAGTAGATACTGTTGTG+TGG | 0.631236 | 4.2:+88167118 | MS.gene33362:CDS |
ACTCATTATACCCAAAGTGA+GGG | 0.631789 | 4.2:+88163234 | MS.gene33362:CDS |
AAAGTTGGCCTCTGATGTTG+AGG | 0.632830 | 4.2:+88162795 | MS.gene33362:CDS |
ATGAACAGTTCAAGGCAACA+AGG | 0.634261 | 4.2:+88162826 | MS.gene33362:CDS |
TGTGTCTTCGTCCAACAGAA+CGG | 0.635332 | 4.2:+88160926 | MS.gene33362:CDS |
CTTTACGGGTACTCTATAGG+TGG | 0.640527 | 4.2:-88160574 | None:intergenic |
ACAAATCTGACAGTGAGACA+TGG | 0.643964 | 4.2:+88163133 | MS.gene33362:CDS |
GCAGAAATCGTAAATATCGG+TGG | 0.645257 | 4.2:+88163486 | MS.gene33362:CDS |
AACGGGTGAACTGGTGCAGG+AGG | 0.645875 | 4.2:-88168110 | None:intergenic |
TTTCAAACTTTCTGTTCCGG+TGG | 0.647830 | 4.2:-88161762 | None:intergenic |
AAGATGGAGAGTTGAAACAA+CGG | 0.659793 | 4.2:+88163595 | MS.gene33362:CDS |
TGATCTCCCAGAAGAAGCGG+AGG | 0.666066 | 4.2:-88163091 | None:intergenic |
ACTTCTGATAAATCAAAACC+AGG | 0.666314 | 4.2:+88163210 | MS.gene33362:CDS |
GATACTAGGATGAAGAACAT+GGG | 0.668142 | 4.2:+88161968 | MS.gene33362:CDS |
TTCTAATTCTACCACAACAG+AGG | 0.668388 | 4.2:+88161877 | MS.gene33362:CDS |
CACAACAGTCACAACAACCA+CGG | 0.671304 | 4.2:-88160545 | None:intergenic |
AAAGAACAGGAAGGTCCATG+TGG | 0.672842 | 4.2:+88163019 | MS.gene33362:CDS |
TTGTTGATGAGTTTGTGGAG+AGG | 0.673580 | 4.2:+88162716 | MS.gene33362:CDS |
AGAGTAGATACTGTTGTGTG+GGG | 0.676419 | 4.2:+88167120 | MS.gene33362:CDS |
GCACAAGAACAGCACCAACA+GGG | 0.676445 | 4.2:-88163767 | None:intergenic |
AAAGGCCGGTGATATTTGGG+AGG | 0.695017 | 4.2:+88163743 | MS.gene33362:CDS |
TTTGGCGCCCAGAAACCCAG+TGG | 0.697614 | 4.2:-88162893 | None:intergenic |
AGAACAGGAAGGTCCATGTG+GGG | 0.701387 | 4.2:+88163021 | MS.gene33362:CDS |
GCATGACAAACAGTTTGACG+AGG | 0.706074 | 4.2:-88160523 | None:intergenic |
GGAGGATGAAGCAAACCGTG+TGG | 0.710302 | 4.2:+88161244 | MS.gene33362:CDS |
TTTGGATAAGAAAACAAACA+AGG | 0.711367 | 4.2:+88161553 | MS.gene33362:CDS |
ACAGAAGCAAGTCCACAGCG+AGG | 0.728939 | 4.2:+88161505 | MS.gene33362:CDS |
CAATTGTTAAAAGAACAGGA+AGG | 0.791653 | 4.2:+88163010 | MS.gene33362:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 88160414 | 88168313 | 88160414 | ID=MS.gene33362 |
chr4.2 | mRNA | 88160414 | 88168313 | 88160414 | ID=MS.gene33362.t1;Parent=MS.gene33362 |
chr4.2 | exon | 88160414 | 88163823 | 88160414 | ID=MS.gene33362.t1.exon1;Parent=MS.gene33362.t1 |
chr4.2 | CDS | 88160414 | 88163823 | 88160414 | ID=cds.MS.gene33362.t1;Parent=MS.gene33362.t1 |
chr4.2 | exon | 88163904 | 88163991 | 88163904 | ID=MS.gene33362.t1.exon2;Parent=MS.gene33362.t1 |
chr4.2 | CDS | 88163904 | 88163991 | 88163904 | ID=cds.MS.gene33362.t1;Parent=MS.gene33362.t1 |
chr4.2 | exon | 88167057 | 88167184 | 88167057 | ID=MS.gene33362.t1.exon3;Parent=MS.gene33362.t1 |
chr4.2 | CDS | 88167057 | 88167184 | 88167057 | ID=cds.MS.gene33362.t1;Parent=MS.gene33362.t1 |
chr4.2 | exon | 88168064 | 88168313 | 88168064 | ID=MS.gene33362.t1.exon4;Parent=MS.gene33362.t1 |
chr4.2 | CDS | 88168064 | 88168313 | 88168064 | ID=cds.MS.gene33362.t1;Parent=MS.gene33362.t1 |
Gene Sequence |
Protein sequence |