AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene33465

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33465.t1 MTR_4g014810 99.776 447 1 0 1 447 1 447 0.0 919
MS.gene33465.t1 MTR_1g495705 96.429 448 15 1 1 447 1 448 0.0 891
MS.gene33465.t1 MTR_1g095650 96.429 448 15 1 1 447 1 448 0.0 891
MS.gene33465.t1 MTR_1g095703 96.205 448 16 1 1 447 1 448 0.0 890
MS.gene33465.t1 MTR_6g021800 96.083 434 17 0 1 434 1 434 0.0 874
MS.gene33465.t1 MTR_6g021805 96.083 434 17 0 1 434 1 434 0.0 874
MS.gene33465.t1 MTR_1g013680 95.195 437 18 1 1 434 1 437 0.0 857
MS.gene33465.t1 MTR_1g085410 82.258 434 77 0 1 434 1 434 0.0 743
MS.gene33465.t1 MTR_1g101870 80.963 436 78 3 1 436 1 431 0.0 731
MS.gene33465.t1 MTR_1g101870 80.963 436 78 3 1 436 1 431 0.0 728
MS.gene33465.t1 MTR_1g024175 78.802 434 92 0 1 434 1 434 0.0 726
MS.gene33465.t1 MTR_8g014590 79.065 449 91 2 1 446 1 449 0.0 717
MS.gene33465.t1 MTR_1g095650 95.389 347 15 1 102 447 1 347 0.0 682
MS.gene33465.t1 MTR_2g082730 73.364 428 97 2 1 426 1 413 0.0 647
MS.gene33465.t1 MTR_5g037350 67.377 469 116 1 3 434 13 481 0.0 634
MS.gene33465.t1 MTR_1g089520 70.930 430 107 3 4 432 5 417 0.0 625
MS.gene33465.t1 MTR_2g082665 68.224 428 93 2 1 426 1 387 0.0 590
MS.gene33465.t1 MTR_2g037420 64.159 452 116 4 1 447 1 411 0.0 566
MS.gene33465.t1 MTR_8g013910 64.286 448 125 5 1 432 1 429 0.0 555
MS.gene33465.t1 MTR_2g080210 63.453 446 121 5 1 443 1 407 0.0 551
MS.gene33465.t1 MTR_8g008740 78.154 325 70 1 1 324 1 325 0.0 540
MS.gene33465.t1 MTR_1g112460 64.765 298 63 4 155 446 1 262 6.55e-124 361
MS.gene33465.t1 MTR_1g495735 74.627 201 41 1 240 430 106 306 2.31e-99 300
MS.gene33465.t1 MTR_1g495735 71.698 53 15 0 21 73 2 54 4.76e-17 82.0
MS.gene33465.t1 MTR_6g080420 38.173 427 256 5 5 426 89 512 1.39e-98 305
MS.gene33465.t1 MTR_8g106700 37.939 427 255 6 4 424 43 465 9.44e-95 293
MS.gene33465.t1 MTR_8g106700 37.939 427 255 6 4 424 49 471 1.17e-94 293
MS.gene33465.t1 MTR_8g106700 37.939 427 255 6 4 424 70 492 3.41e-94 293
MS.gene33465.t1 MTR_8g087950 36.000 425 264 5 7 426 275 696 1.71e-90 289
MS.gene33465.t1 MTR_1g101880 87.013 154 20 0 1 154 1 154 6.54e-90 274
MS.gene33465.t1 MTR_8g087950 35.748 428 267 5 7 429 348 772 8.85e-90 289
MS.gene33465.t1 MTR_4g054970 56.612 242 76 4 193 431 50 265 4.45e-81 252
MS.gene33465.t1 MTR_4g054970 75.000 44 11 0 1 44 1 44 7.02e-13 69.3
MS.gene33465.t1 MTR_1g024165 81.429 140 26 0 6 145 10 149 1.11e-78 241
MS.gene33465.t1 MTR_8g014950 76.471 102 24 0 3 104 4 105 1.50e-47 159
MS.gene33465.t1 MTR_7g094460 30.137 438 246 14 3 429 59 447 6.75e-45 162
MS.gene33465.t1 MTR_2g021300 29.613 439 247 12 3 429 46 434 4.43e-43 157
MS.gene33465.t1 MTR_7g098190 53.293 167 52 5 56 220 10 152 1.16e-42 149
MS.gene33465.t1 MTR_3g076660 29.730 444 251 15 3 429 88 487 1.13e-39 149
MS.gene33465.t1 MTR_8g014960 73.239 71 19 0 213 283 2 72 3.11e-29 113
MS.gene33465.t1 MTR_3g097250 26.471 272 143 9 9 272 85 307 5.92e-13 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33465.t1 AT5G60390 93.946 446 27 0 1 446 1 446 0.0 877
MS.gene33465.t1 AT5G60390 93.946 446 27 0 1 446 1 446 0.0 877
MS.gene33465.t1 AT5G60390 93.946 446 27 0 1 446 1 446 0.0 877
MS.gene33465.t1 AT1G07920 93.946 446 27 0 1 446 1 446 0.0 877
MS.gene33465.t1 AT1G07940 93.946 446 27 0 1 446 1 446 0.0 877
MS.gene33465.t1 AT1G07940 93.946 446 27 0 1 446 1 446 0.0 877
MS.gene33465.t1 AT1G07940 93.946 446 27 0 1 446 1 446 0.0 877
MS.gene33465.t1 AT1G07940 93.946 446 27 0 1 446 1 446 0.0 877
MS.gene33465.t1 AT1G07930 93.946 446 27 0 1 446 1 446 0.0 877
MS.gene33465.t1 AT1G07930 98.039 255 5 0 1 255 1 255 0.0 528
MS.gene33465.t1 AT1G07930 86.207 116 16 0 331 446 254 369 1.65e-64 212
MS.gene33465.t1 AT1G18070 37.176 425 259 5 5 424 99 520 2.79e-95 297
MS.gene33465.t1 AT1G18070 37.176 425 259 5 5 424 99 520 2.79e-95 297
MS.gene33465.t1 AT1G18070 36.468 436 258 6 5 424 99 531 3.24e-92 289
MS.gene33465.t1 AT5G10630 35.529 425 266 5 7 426 239 660 7.61e-91 289
MS.gene33465.t1 AT5G10630 35.529 425 266 5 7 426 240 661 7.79e-91 289
MS.gene33465.t1 AT5G10630 35.529 425 266 5 7 426 240 661 7.79e-91 289
MS.gene33465.t1 AT5G10630 35.529 425 266 5 7 426 310 731 2.86e-90 290
MS.gene33465.t1 AT5G10630 35.529 425 266 5 7 426 315 736 3.76e-90 289
MS.gene33465.t1 AT1G35550 75.962 104 25 0 335 438 1 104 2.33e-51 169
MS.gene33465.t1 AT4G20360 30.575 435 253 10 3 426 75 471 3.00e-44 161
MS.gene33465.t1 AT4G20360 30.575 435 253 10 3 426 75 471 3.00e-44 161
MS.gene33465.t1 AT4G02930 29.841 439 247 15 3 429 63 452 4.43e-43 157
MS.gene33465.t1 AT2G31060 25.000 264 160 8 9 263 61 295 4.32e-12 68.6
MS.gene33465.t1 AT5G39900 25.839 298 158 8 4 288 64 311 6.54e-12 68.2
MS.gene33465.t1 AT5G08650 26.518 313 172 13 9 311 88 352 1.16e-11 67.4
MS.gene33465.t1 AT5G08650 26.518 313 172 13 9 311 88 352 1.23e-11 67.4
MS.gene33465.t1 AT2G31060 24.615 260 162 7 9 263 61 291 5.55e-11 65.1

Find 135 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCACGGTTCATTTCTTCT+TGG 0.216911 4.2:-86532081 None:intergenic
GCTCTCCTTGCTTTCACTCT+TGG 0.289982 4.2:+86531059 MS.gene33465:CDS
GTCTACAAGATTGGAGGAAT+TGG 0.315206 4.2:+86531471 MS.gene33465:CDS
GTCTCCATTCTTCAGGAACT+TGG 0.325237 4.2:-86531886 None:intergenic
CACATTAACATTGTTGTCAT+TGG 0.329838 4.2:+86530669 MS.gene33465:CDS
TTCATTAAGAACATGATTAC+TGG 0.340521 4.2:+86530942 MS.gene33465:CDS
TCTCTCACTGAGGCACTTCC+CGG 0.352595 4.2:+86531606 MS.gene33465:CDS
TACCAGCGTCTCCATTCTTC+AGG 0.357823 4.2:-86531893 None:intergenic
ATTCCATTTGTTCCCATCTC+TGG 0.372946 4.2:+86531312 MS.gene33465:CDS
GCAAAAGTCACCACCATTCC+AGG 0.373840 4.2:-86531534 None:intergenic
ATACCTGCTCTTGGAGTACT+TGG 0.376650 4.2:-86531229 None:intergenic
ACTAAGATTGACAGGCGTTC+TGG 0.381039 4.2:+86531843 MS.gene33465:CDS
TGCGTCAAACTGTGGCTGTT+GGG 0.385555 4.2:+86532000 MS.gene33465:CDS
AAGTTAGCAGCCTCCTTGGC+AGG 0.392934 4.2:-86531711 None:intergenic
GTCATTGGCCATGTCGACTC+TGG 0.395247 4.2:+86530684 MS.gene33465:CDS
CACCACCATTCCAGGTTTCA+TGG 0.400023 4.2:-86531526 None:intergenic
CTCCTTGGCAGGGTCATCCT+TGG 0.402495 4.2:-86531700 None:intergenic
CTTAATGAAATCTCTGTGTC+CGG 0.412752 4.2:-86530928 None:intergenic
ATCAAATAAATGAGCCTAAG+AGG 0.421338 4.2:+86531412 MS.gene33465:CDS
AAGGACAATGGGTAAGGAAA+AGG 0.424225 4.2:+86530644 None:intergenic
ATGAATCACCCTGGCCAGAT+TGG 0.425183 4.2:+86531753 MS.gene33465:CDS
TTCACGGGTCTGACCATCCT+TGG 0.425447 4.2:-86531033 None:intergenic
ATAGCCAACCTTCTTCATAT+AGG 0.426065 4.2:-86531277 None:intergenic
GGCTTGTCTGATGGCCTCTT+AGG 0.432559 4.2:-86531426 None:intergenic
CACCCTGGCCAGATTGGAAA+TGG 0.432985 4.2:+86531759 MS.gene33465:CDS
GCCCCTCCGACTACCACTTC+AGG 0.433104 4.2:+86531446 MS.gene33465:CDS
AATTTCATCATACCTGCTCT+TGG 0.433341 4.2:-86531238 None:intergenic
GAGGTGTGGCAGTCAAGCAC+AGG 0.434332 4.2:-86531789 None:intergenic
CTCATCATTGATTCCACCAC+TGG 0.434917 4.2:+86530990 MS.gene33465:CDS
GGGCATAGCCATTTCCAATC+TGG 0.448022 4.2:-86531767 None:intergenic
AAACCAGAGATGGGAACAAA+TGG 0.449170 4.2:-86531315 None:intergenic
AGCGTTCATTCAAGTATGCT+TGG 0.450783 4.2:+86530802 MS.gene33465:CDS
TGTGGCTGTTGGGGTTATCA+AGG 0.455009 4.2:+86532010 MS.gene33465:CDS
CTTCAGGATGTCTACAAGAT+TGG 0.458119 4.2:+86531462 MS.gene33465:CDS
TTAGTTATCTTAACAGTGCC+AGG 0.458448 4.2:-86532050 None:intergenic
GCGTTCATTCAAGTATGCTT+GGG 0.461276 4.2:+86530803 MS.gene33465:CDS
AGTCTCAACAACCATGGGCT+TGG 0.462350 4.2:-86531934 None:intergenic
CTCAACAACCATGGGCTTGG+TGG 0.464097 4.2:-86531931 None:intergenic
TAGCCATTTCCAATCTGGCC+AGG 0.474048 4.2:-86531762 None:intergenic
TTAATGAAATCTCTGTGTCC+GGG 0.484998 4.2:-86530927 None:intergenic
AGGGTCATCCTTGGTGTTTG+AGG 0.487546 4.2:-86531691 None:intergenic
TACAAATCTTGACTGGTACA+AGG 0.490199 4.2:+86531365 MS.gene33465:CDS
GAGCCCAAGTTCCTGAAGAA+TGG 0.491587 4.2:+86531882 MS.gene33465:CDS
TGTGAAGTTAGCAGCCTCCT+TGG 0.493959 4.2:-86531715 None:intergenic
AGTCGGAGGGGCTTGTCTGA+TGG 0.496444 4.2:-86531435 None:intergenic
ATCTCCCTCAAAACCAGAGA+TGG 0.496573 4.2:-86531325 None:intergenic
GATTGACAGGCGTTCTGGTA+AGG 0.497183 4.2:+86531848 MS.gene33465:CDS
ATCATTGATTCCACCACTGG+TGG 0.510309 4.2:+86530993 MS.gene33465:CDS
AGCTCGTTACTAAGATTGAC+AGG 0.513858 4.2:+86531835 MS.gene33465:CDS
TGAGAACAGCACAATCAGCT+TGG 0.516820 4.2:-86530971 None:intergenic
GAGAACAGCACAATCAGCTT+GGG 0.517298 4.2:-86530970 None:intergenic
TATCAAGGGTGTGGAGAAGA+AGG 0.517386 4.2:+86532025 MS.gene33465:CDS
ACTTCAGTTTGCAGTCCAGT+TGG 0.517541 4.2:-86531558 None:intergenic
CAAGAGCCTCAAGAAGTGTT+GGG 0.518886 4.2:-86531389 None:intergenic
ATTAAATCCCACATTGTCAC+CGG 0.519224 4.2:-86531625 None:intergenic
CTTGGAGTACTTGGGTGTAG+TGG 0.520336 4.2:-86531220 None:intergenic
TGTTAAGAATGTTTCTGTCA+AGG 0.521267 4.2:+86531647 MS.gene33465:CDS
CAGGATGTCTACAAGATTGG+AGG 0.523217 4.2:+86531465 MS.gene33465:CDS
TTGCTTTCACTCTTGGTGTG+AGG 0.528420 4.2:+86531066 MS.gene33465:CDS
AGTTTCATCCTATATGAAGA+AGG 0.530606 4.2:+86531269 MS.gene33465:CDS
TCAAGAGCCTCAAGAAGTGT+TGG 0.532468 4.2:-86531390 None:intergenic
CTCAAGGCTGAGCGTGAAAG+AGG 0.533500 4.2:+86530837 MS.gene33465:CDS
TCATTGGCCATGTCGACTCT+GGG 0.536467 4.2:+86530685 MS.gene33465:CDS
AGCAAACTTGACAGCAATGT+GGG 0.541075 4.2:-86531811 None:intergenic
CCAGTCTCAACACGTCCGAC+AGG 0.541163 4.2:-86531501 None:intergenic
CCTGTCGGACGTGTTGAGAC+TGG 0.541718 4.2:+86531501 MS.gene33465:CDS
TCTCCATTCTTCAGGAACTT+GGG 0.543090 4.2:-86531885 None:intergenic
TTCTCTGAATATCCTCCACT+TGG 0.543785 4.2:+86531957 MS.gene33465:CDS
AGGTGTGGCAGTCAAGCACA+GGG 0.544526 4.2:-86531788 None:intergenic
TGCACTGTCATTGATGCCCC+CGG 0.544718 4.2:+86530909 MS.gene33465:CDS
TCATCCTATATGAAGAAGGT+TGG 0.544820 4.2:+86531273 MS.gene33465:CDS
CACTTGATCTACAAGCTTGG+AGG 0.545798 4.2:+86530726 MS.gene33465:CDS
GGTCACTTGATCTACAAGCT+TGG 0.555547 4.2:+86530723 MS.gene33465:CDS
ATGCGTCAAACTGTGGCTGT+TGG 0.557227 4.2:+86531999 MS.gene33465:CDS
GAAGCTGGTATTTCCAAGGA+TGG 0.557613 4.2:+86531020 MS.gene33465:CDS
TCAACAACCATGGGCTTGGT+GGG 0.557624 4.2:-86531930 None:intergenic
AAGCAAGGAGAGCATGTTCA+CGG 0.559179 4.2:-86531049 None:intergenic
AGCTTCAAAACCACCAGTGG+TGG 0.562107 4.2:-86531003 None:intergenic
TGTTGGGGTTATCAAGGGTG+TGG 0.563472 4.2:+86532016 MS.gene33465:CDS
GCATATCTCTGACAGCAAAA+CGG 0.563498 4.2:-86531980 None:intergenic
ACAAATCTTGACTGGTACAA+GGG 0.563768 4.2:+86531366 MS.gene33465:CDS
TTGACAAGCGTGTGATTGAG+AGG 0.564366 4.2:+86530751 MS.gene33465:CDS
GTGGCTGTTGGGGTTATCAA+GGG 0.565604 4.2:+86532011 MS.gene33465:CDS
CAGGTATGATGAAATTGTGA+AGG 0.569288 4.2:+86531245 MS.gene33465:CDS
TCTGGGAAGTCAACTACCAC+TGG 0.570179 4.2:+86530702 MS.gene33465:CDS
TTGGGTTCTTGACAAGCTCA+AGG 0.572280 4.2:+86530821 MS.gene33465:CDS
AGCAAGGAGAGCATGTTCAC+GGG 0.572470 4.2:-86531048 None:intergenic
CACCCAAGTACTCCAAGAGC+AGG 0.574869 4.2:+86531226 MS.gene33465:CDS
ATCCTGAAGTGGTAGTCGGA+GGG 0.576252 4.2:-86531448 None:intergenic
GATGATTCCCACCAAGCCCA+TGG 0.580619 4.2:+86531923 MS.gene33465:CDS
TAATGAAATCTCTGTGTCCG+GGG 0.584658 4.2:-86530926 None:intergenic
TACCTGCTCTTGGAGTACTT+GGG 0.587772 4.2:-86531228 None:intergenic
GCGTCAAACTGTGGCTGTTG+GGG 0.590275 4.2:+86532001 MS.gene33465:CDS
GAGAAAGTCTCAACAACCAT+GGG 0.598729 4.2:-86531939 None:intergenic
TTGACTTCCCAGAGTCGACA+TGG 0.600770 4.2:-86530692 None:intergenic
GGCACTTCCCGGTGACAATG+TGG 0.604709 4.2:+86531617 MS.gene33465:CDS
TCTCCCTCAAAACCAGAGAT+GGG 0.607478 4.2:-86531324 None:intergenic
TCCTGAAGTGGTAGTCGGAG+GGG 0.608492 4.2:-86531447 None:intergenic
AGCGCTCTACAAATCTTGAC+TGG 0.610562 4.2:+86531358 MS.gene33465:CDS
GGTGTGGAGAAGAAGGAACC+TGG 0.612825 4.2:+86532032 MS.gene33465:CDS
AGAGAAAGTCTCAACAACCA+TGG 0.614767 4.2:-86531940 None:intergenic
GCACTTCCCGGTGACAATGT+GGG 0.616830 4.2:+86531618 MS.gene33465:CDS
GCAAACTGAAGTCAAGTCTG+TGG 0.619692 4.2:+86531569 MS.gene33465:CDS
TCACACCAAGAGTGAAAGCA+AGG 0.621193 4.2:-86531064 None:intergenic
ATCTTGTAGACATCCTGAAG+TGG 0.621388 4.2:-86531459 None:intergenic
CAAGGGCCCAACACTTCTTG+AGG 0.622743 4.2:+86531383 MS.gene33465:CDS
AGCCATTTCCAATCTGGCCA+GGG 0.623271 4.2:-86531761 None:intergenic
ACAGCAAAACGGCCAAGTGG+AGG 0.624787 4.2:-86531969 None:intergenic
TTCCTGAAGAATGGAGACGC+TGG 0.629959 4.2:+86531891 MS.gene33465:CDS
CACCAAGGATGACCCTGCCA+AGG 0.633966 4.2:+86531698 MS.gene33465:CDS
GGAATTGGAACTGTTCCTGT+CGG 0.634263 4.2:+86531486 MS.gene33465:CDS
CATCCTGAAGTGGTAGTCGG+AGG 0.637451 4.2:-86531449 None:intergenic
AGACATCCTGAAGTGGTAGT+CGG 0.638051 4.2:-86531452 None:intergenic
CAGCAAACTTGACAGCAATG+TGG 0.638328 4.2:-86531812 None:intergenic
AGTTAGCAGCCTCCTTGGCA+GGG 0.640865 4.2:-86531710 None:intergenic
GAGACTGGTACCATGAAACC+TGG 0.643102 4.2:+86531516 MS.gene33465:CDS
AATGATCTGCTGCTGCAACA+AGG 0.643325 4.2:+86531091 MS.gene33465:CDS
CAAGGATGACCCTGCCAAGG+AGG 0.650706 4.2:+86531701 MS.gene33465:CDS
TGACAGCAATGTGGGAGGTG+TGG 0.650950 4.2:-86531803 None:intergenic
AATGAAATCTCTGTGTCCGG+GGG 0.659564 4.2:-86530925 None:intergenic
ACCAGCTTCAAAACCACCAG+TGG 0.663026 4.2:-86531006 None:intergenic
TCTGTCAAGGATCTCAAGCG+TGG 0.663761 4.2:+86531660 MS.gene33465:CDS
TTAAATCCCACATTGTCACC+GGG 0.665158 4.2:-86531624 None:intergenic
CAGAGATATGCGTCAAACTG+TGG 0.666313 4.2:+86531992 MS.gene33465:CDS
TTCTGGTAAGGAGATCGAGA+AGG 0.668930 4.2:+86531860 MS.gene33465:CDS
CTGACAGCAAAACGGCCAAG+TGG 0.679918 4.2:-86531972 None:intergenic
GTGATTATCATGAATCACCC+TGG 0.681230 4.2:+86531744 MS.gene33465:CDS
TACCATGAAACCTGGAATGG+TGG 0.682936 4.2:+86531524 MS.gene33465:CDS
CTTGTAGATCAAGTGACCAG+TGG 0.695213 4.2:-86530718 None:intergenic
AAACTTGACAGCAATGTGGG+AGG 0.695398 4.2:-86531808 None:intergenic
TCACAATTGACATTGCTCTG+TGG 0.708352 4.2:+86530862 MS.gene33465:CDS
TGGTACCATGAAACCTGGAA+TGG 0.712415 4.2:+86531521 MS.gene33465:CDS
GGTGTGGCAGTCAAGCACAG+GGG 0.731105 4.2:-86531787 None:intergenic
TTATGTTGCCTCAAACACCA+AGG 0.751394 4.2:+86531683 MS.gene33465:CDS
GCATCATGAATCTCTCACTG+AGG 0.754777 4.2:+86531596 MS.gene33465:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ATAATCAAATGCAACTAAAG+AGG - chr4.2:86531145-86531164 None:intergenic 25.0%
! TAATCAAATGCAACTAAAGA+GGG - chr4.2:86531144-86531163 None:intergenic 25.0%
! TTCATTAAGAACATGATTAC+TGG + chr4.2:86530942-86530961 MS.gene33465:CDS 25.0%
!! GAACAAATGGAATTTTATCT+GGG - chr4.2:86531305-86531324 None:intergenic 25.0%
!! TTTTTGATATCTTGAACAGA+TGG + chr4.2:86531194-86531213 MS.gene33465:intron 25.0%
AATCAAATGCAACTAAAGAG+GGG - chr4.2:86531143-86531162 None:intergenic 30.0%
AGTTTCATCCTATATGAAGA+AGG + chr4.2:86531269-86531288 MS.gene33465:CDS 30.0%
ATCAAATAAATGAGCCTAAG+AGG + chr4.2:86531412-86531431 MS.gene33465:CDS 30.0%
CACATTAACATTGTTGTCAT+TGG + chr4.2:86530669-86530688 MS.gene33465:CDS 30.0%
! GGAACAAATGGAATTTTATC+TGG - chr4.2:86531306-86531325 None:intergenic 30.0%
! TGTTAAGAATGTTTCTGTCA+AGG + chr4.2:86531647-86531666 MS.gene33465:CDS 30.0%
AATTTCATCATACCTGCTCT+TGG - chr4.2:86531241-86531260 None:intergenic 35.0%
ACAAATCTTGACTGGTACAA+GGG + chr4.2:86531366-86531385 MS.gene33465:CDS 35.0%
ATAGCCAACCTTCTTCATAT+AGG - chr4.2:86531280-86531299 None:intergenic 35.0%
ATTAAATCCCACATTGTCAC+CGG - chr4.2:86531628-86531647 None:intergenic 35.0%
CAGGTATGATGAAATTGTGA+AGG + chr4.2:86531245-86531264 MS.gene33465:CDS 35.0%
CTTAATGAAATCTCTGTGTC+CGG - chr4.2:86530931-86530950 None:intergenic 35.0%
TACAAATCTTGACTGGTACA+AGG + chr4.2:86531365-86531384 MS.gene33465:CDS 35.0%
TCATCCTATATGAAGAAGGT+TGG + chr4.2:86531273-86531292 MS.gene33465:CDS 35.0%
TTAATGAAATCTCTGTGTCC+GGG - chr4.2:86530930-86530949 None:intergenic 35.0%
TTAGTTATCTTAACAGTGCC+AGG - chr4.2:86532053-86532072 None:intergenic 35.0%
!!! TTTTGAAGCTGGTATTTCCA+AGG + chr4.2:86531016-86531035 MS.gene33465:CDS 35.0%
AAACCAGAGATGGGAACAAA+TGG - chr4.2:86531318-86531337 None:intergenic 40.0%
AGAGAAAGTCTCAACAACCA+TGG - chr4.2:86531943-86531962 None:intergenic 40.0%
AGCAAACTTGACAGCAATGT+GGG - chr4.2:86531814-86531833 None:intergenic 40.0%
AGCGTTCATTCAAGTATGCT+TGG + chr4.2:86530802-86530821 MS.gene33465:CDS 40.0%
AGCTCGTTACTAAGATTGAC+AGG + chr4.2:86531835-86531854 MS.gene33465:CDS 40.0%
ATCTTGTAGACATCCTGAAG+TGG - chr4.2:86531462-86531481 None:intergenic 40.0%
ATTCCATTTGTTCCCATCTC+TGG + chr4.2:86531312-86531331 MS.gene33465:CDS 40.0%
CTTCAGGATGTCTACAAGAT+TGG + chr4.2:86531462-86531481 MS.gene33465:CDS 40.0%
GAGAAAGTCTCAACAACCAT+GGG - chr4.2:86531942-86531961 None:intergenic 40.0%
GCATATCTCTGACAGCAAAA+CGG - chr4.2:86531983-86532002 None:intergenic 40.0%
GCGTTCATTCAAGTATGCTT+GGG + chr4.2:86530803-86530822 MS.gene33465:CDS 40.0%
GTCTACAAGATTGGAGGAAT+TGG + chr4.2:86531471-86531490 MS.gene33465:CDS 40.0%
GTGATTATCATGAATCACCC+TGG + chr4.2:86531744-86531763 MS.gene33465:CDS 40.0%
TAATGAAATCTCTGTGTCCG+GGG - chr4.2:86530929-86530948 None:intergenic 40.0%
TCACAATTGACATTGCTCTG+TGG + chr4.2:86530862-86530881 MS.gene33465:CDS 40.0%
TCTCCATTCTTCAGGAACTT+GGG - chr4.2:86531888-86531907 None:intergenic 40.0%
TTAAATCCCACATTGTCACC+GGG - chr4.2:86531627-86531646 None:intergenic 40.0%
TTATGTTGCCTCAAACACCA+AGG + chr4.2:86531683-86531702 MS.gene33465:CDS 40.0%
TTCTCTGAATATCCTCCACT+TGG + chr4.2:86531957-86531976 MS.gene33465:CDS 40.0%
AAACTTGACAGCAATGTGGG+AGG - chr4.2:86531811-86531830 None:intergenic 45.0%
AATGAAATCTCTGTGTCCGG+GGG - chr4.2:86530928-86530947 None:intergenic 45.0%
AATGATCTGCTGCTGCAACA+AGG + chr4.2:86531091-86531110 MS.gene33465:CDS 45.0%
ACTAAGATTGACAGGCGTTC+TGG + chr4.2:86531843-86531862 MS.gene33465:CDS 45.0%
ACTTCAGTTTGCAGTCCAGT+TGG - chr4.2:86531561-86531580 None:intergenic 45.0%
AGACATCCTGAAGTGGTAGT+CGG - chr4.2:86531455-86531474 None:intergenic 45.0%
AGCGCTCTACAAATCTTGAC+TGG + chr4.2:86531358-86531377 MS.gene33465:CDS 45.0%
ATCTCCCTCAAAACCAGAGA+TGG - chr4.2:86531328-86531347 None:intergenic 45.0%
CACTTGATCTACAAGCTTGG+AGG + chr4.2:86530726-86530745 MS.gene33465:CDS 45.0%
CAGAGATATGCGTCAAACTG+TGG + chr4.2:86531992-86532011 MS.gene33465:CDS 45.0%
CAGCAAACTTGACAGCAATG+TGG - chr4.2:86531815-86531834 None:intergenic 45.0%
CAGGATGTCTACAAGATTGG+AGG + chr4.2:86531465-86531484 MS.gene33465:CDS 45.0%
CTTGTAGATCAAGTGACCAG+TGG - chr4.2:86530721-86530740 None:intergenic 45.0%
GAAGCTGGTATTTCCAAGGA+TGG + chr4.2:86531020-86531039 MS.gene33465:CDS 45.0%
GAGAACAGCACAATCAGCTT+GGG - chr4.2:86530973-86530992 None:intergenic 45.0%
GCAAACTGAAGTCAAGTCTG+TGG + chr4.2:86531569-86531588 MS.gene33465:CDS 45.0%
GCATCATGAATCTCTCACTG+AGG + chr4.2:86531596-86531615 MS.gene33465:CDS 45.0%
GGAATTGGAACTGTTCCTGT+CGG + chr4.2:86531486-86531505 MS.gene33465:CDS 45.0%
GGTCACTTGATCTACAAGCT+TGG + chr4.2:86530723-86530742 MS.gene33465:CDS 45.0%
GTCTCCATTCTTCAGGAACT+TGG - chr4.2:86531889-86531908 None:intergenic 45.0%
TACCATGAAACCTGGAATGG+TGG + chr4.2:86531524-86531543 MS.gene33465:CDS 45.0%
TCACACCAAGAGTGAAAGCA+AGG - chr4.2:86531067-86531086 None:intergenic 45.0%
TCTCCCTCAAAACCAGAGAT+GGG - chr4.2:86531327-86531346 None:intergenic 45.0%
TGAGAACAGCACAATCAGCT+TGG - chr4.2:86530974-86530993 None:intergenic 45.0%
TGGTACCATGAAACCTGGAA+TGG + chr4.2:86531521-86531540 MS.gene33465:CDS 45.0%
TTCTGGTAAGGAGATCGAGA+AGG + chr4.2:86531860-86531879 MS.gene33465:CDS 45.0%
TTGACAAGCGTGTGATTGAG+AGG + chr4.2:86530751-86530770 MS.gene33465:CDS 45.0%
TTGGGTTCTTGACAAGCTCA+AGG + chr4.2:86530821-86530840 MS.gene33465:CDS 45.0%
! AAGCAAGGAGAGCATGTTCA+CGG - chr4.2:86531052-86531071 None:intergenic 45.0%
! ATACCTGCTCTTGGAGTACT+TGG - chr4.2:86531232-86531251 None:intergenic 45.0%
! TACCTGCTCTTGGAGTACTT+GGG - chr4.2:86531231-86531250 None:intergenic 45.0%
! TATCAAGGGTGTGGAGAAGA+AGG + chr4.2:86532025-86532044 MS.gene33465:CDS 45.0%
! TCAAGAGCCTCAAGAAGTGT+TGG - chr4.2:86531393-86531412 None:intergenic 45.0%
! TTGCTTTCACTCTTGGTGTG+AGG + chr4.2:86531066-86531085 MS.gene33465:CDS 45.0%
!! ATCATTGATTCCACCACTGG+TGG + chr4.2:86530993-86531012 MS.gene33465:CDS 45.0%
!! CAAGAGCCTCAAGAAGTGTT+GGG - chr4.2:86531392-86531411 None:intergenic 45.0%
!! CTCATCATTGATTCCACCAC+TGG + chr4.2:86530990-86531009 MS.gene33465:CDS 45.0%
!!! GTTCCCATCTCTGGTTTTGA+GGG + chr4.2:86531321-86531340 MS.gene33465:CDS 45.0%
!!! TGTTCCCATCTCTGGTTTTG+AGG + chr4.2:86531320-86531339 MS.gene33465:CDS 45.0%
ACCAGCTTCAAAACCACCAG+TGG - chr4.2:86531009-86531028 None:intergenic 50.0%
AGCCATTTCCAATCTGGCCA+GGG - chr4.2:86531764-86531783 None:intergenic 50.0%
AGCTTCAAAACCACCAGTGG+TGG - chr4.2:86531006-86531025 None:intergenic 50.0%
AGTCTCAACAACCATGGGCT+TGG - chr4.2:86531937-86531956 None:intergenic 50.0%
ATCCTGAAGTGGTAGTCGGA+GGG - chr4.2:86531451-86531470 None:intergenic 50.0%
ATGAATCACCCTGGCCAGAT+TGG + chr4.2:86531753-86531772 MS.gene33465:CDS 50.0%
ATGCGTCAAACTGTGGCTGT+TGG + chr4.2:86531999-86532018 MS.gene33465:CDS 50.0%
CACCACCATTCCAGGTTTCA+TGG - chr4.2:86531529-86531548 None:intergenic 50.0%
GAGACTGGTACCATGAAACC+TGG + chr4.2:86531516-86531535 MS.gene33465:CDS 50.0%
GAGCCCAAGTTCCTGAAGAA+TGG + chr4.2:86531882-86531901 MS.gene33465:CDS 50.0%
GATTGACAGGCGTTCTGGTA+AGG + chr4.2:86531848-86531867 MS.gene33465:CDS 50.0%
GCAAAAGTCACCACCATTCC+AGG - chr4.2:86531537-86531556 None:intergenic 50.0%
GCTCTCCTTGCTTTCACTCT+TGG + chr4.2:86531059-86531078 MS.gene33465:CDS 50.0%
GGGCATAGCCATTTCCAATC+TGG - chr4.2:86531770-86531789 None:intergenic 50.0%
GTGGCTGTTGGGGTTATCAA+GGG + chr4.2:86532011-86532030 MS.gene33465:CDS 50.0%
TACCAGCGTCTCCATTCTTC+AGG - chr4.2:86531896-86531915 None:intergenic 50.0%
TAGCCATTTCCAATCTGGCC+AGG - chr4.2:86531765-86531784 None:intergenic 50.0%
TCTGGGAAGTCAACTACCAC+TGG + chr4.2:86530702-86530721 MS.gene33465:CDS 50.0%
TCTGTCAAGGATCTCAAGCG+TGG + chr4.2:86531660-86531679 MS.gene33465:CDS 50.0%
TGCGTCAAACTGTGGCTGTT+GGG + chr4.2:86532000-86532019 MS.gene33465:CDS 50.0%
TGTGAAGTTAGCAGCCTCCT+TGG - chr4.2:86531718-86531737 None:intergenic 50.0%
TGTGGCTGTTGGGGTTATCA+AGG + chr4.2:86532010-86532029 MS.gene33465:CDS 50.0%
TGTTGGGGTTATCAAGGGTG+TGG + chr4.2:86532016-86532035 MS.gene33465:CDS 50.0%
TTCCTGAAGAATGGAGACGC+TGG + chr4.2:86531891-86531910 MS.gene33465:CDS 50.0%
TTGACTTCCCAGAGTCGACA+TGG - chr4.2:86530695-86530714 None:intergenic 50.0%
! AGCAAGGAGAGCATGTTCAC+GGG - chr4.2:86531051-86531070 None:intergenic 50.0%
! CTTGGAGTACTTGGGTGTAG+TGG - chr4.2:86531223-86531242 None:intergenic 50.0%
! GTGGTGACTTTTGCTCCAAC+TGG + chr4.2:86531543-86531562 MS.gene33465:CDS 50.0%
! TCAACAACCATGGGCTTGGT+GGG - chr4.2:86531933-86531952 None:intergenic 50.0%
!! AGGGTCATCCTTGGTGTTTG+AGG - chr4.2:86531694-86531713 None:intergenic 50.0%
!! TCATTGGCCATGTCGACTCT+GGG + chr4.2:86530685-86530704 MS.gene33465:CDS 50.0%
!!! ACCACTGGTGGTTTTGAAGC+TGG + chr4.2:86531005-86531024 MS.gene33465:CDS 50.0%
AAGTTAGCAGCCTCCTTGGC+AGG - chr4.2:86531714-86531733 None:intergenic 55.0%
ACAGCAAAACGGCCAAGTGG+AGG - chr4.2:86531972-86531991 None:intergenic 55.0%
AGGTGTGGCAGTCAAGCACA+GGG - chr4.2:86531791-86531810 None:intergenic 55.0%
AGTTAGCAGCCTCCTTGGCA+GGG - chr4.2:86531713-86531732 None:intergenic 55.0%
CAAGGGCCCAACACTTCTTG+AGG + chr4.2:86531383-86531402 MS.gene33465:CDS 55.0%
CACCCAAGTACTCCAAGAGC+AGG + chr4.2:86531226-86531245 MS.gene33465:CDS 55.0%
CACCCTGGCCAGATTGGAAA+TGG + chr4.2:86531759-86531778 MS.gene33465:CDS 55.0%
CATCCTGAAGTGGTAGTCGG+AGG - chr4.2:86531452-86531471 None:intergenic 55.0%
CTCAACAACCATGGGCTTGG+TGG - chr4.2:86531934-86531953 None:intergenic 55.0%
CTCAAGGCTGAGCGTGAAAG+AGG + chr4.2:86530837-86530856 MS.gene33465:CDS 55.0%
CTGACAGCAAAACGGCCAAG+TGG - chr4.2:86531975-86531994 None:intergenic 55.0%
GATGATTCCCACCAAGCCCA+TGG + chr4.2:86531923-86531942 MS.gene33465:CDS 55.0%
GCACTTCCCGGTGACAATGT+GGG + chr4.2:86531618-86531637 MS.gene33465:CDS 55.0%
GCGTCAAACTGTGGCTGTTG+GGG + chr4.2:86532001-86532020 MS.gene33465:CDS 55.0%
GGCTTGTCTGATGGCCTCTT+AGG - chr4.2:86531429-86531448 None:intergenic 55.0%
GGTGTGGAGAAGAAGGAACC+TGG + chr4.2:86532032-86532051 MS.gene33465:CDS 55.0%
TCCTGAAGTGGTAGTCGGAG+GGG - chr4.2:86531450-86531469 None:intergenic 55.0%
TGACAGCAATGTGGGAGGTG+TGG - chr4.2:86531806-86531825 None:intergenic 55.0%
TGCACTGTCATTGATGCCCC+CGG + chr4.2:86530909-86530928 MS.gene33465:CDS 55.0%
TTCACGGGTCTGACCATCCT+TGG - chr4.2:86531036-86531055 None:intergenic 55.0%
! TCTCTCACTGAGGCACTTCC+CGG + chr4.2:86531606-86531625 MS.gene33465:CDS 55.0%
!! GTCATTGGCCATGTCGACTC+TGG + chr4.2:86530684-86530703 MS.gene33465:CDS 55.0%
AGTCGGAGGGGCTTGTCTGA+TGG - chr4.2:86531438-86531457 None:intergenic 60.0%
CAAGGATGACCCTGCCAAGG+AGG + chr4.2:86531701-86531720 MS.gene33465:CDS 60.0%
CACCAAGGATGACCCTGCCA+AGG + chr4.2:86531698-86531717 MS.gene33465:CDS 60.0%
CCAGTCTCAACACGTCCGAC+AGG - chr4.2:86531504-86531523 None:intergenic 60.0%
CCTGTCGGACGTGTTGAGAC+TGG + chr4.2:86531501-86531520 MS.gene33465:CDS 60.0%
CTCCTTGGCAGGGTCATCCT+TGG - chr4.2:86531703-86531722 None:intergenic 60.0%
GAGGTGTGGCAGTCAAGCAC+AGG - chr4.2:86531792-86531811 None:intergenic 60.0%
GGCACTTCCCGGTGACAATG+TGG + chr4.2:86531617-86531636 MS.gene33465:CDS 60.0%
GGTGTGGCAGTCAAGCACAG+GGG - chr4.2:86531790-86531809 None:intergenic 60.0%
GCCCCTCCGACTACCACTTC+AGG + chr4.2:86531446-86531465 MS.gene33465:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 86530651 86532094 86530651 ID=MS.gene33465
chr4.2 mRNA 86530651 86532094 86530651 ID=MS.gene33465.t1;Parent=MS.gene33465
chr4.2 exon 86530651 86531112 86530651 ID=MS.gene33465.t1.exon1;Parent=MS.gene33465.t1
chr4.2 CDS 86530651 86531112 86530651 ID=cds.MS.gene33465.t1;Parent=MS.gene33465.t1
chr4.2 exon 86531213 86532094 86531213 ID=MS.gene33465.t1.exon2;Parent=MS.gene33465.t1
chr4.2 CDS 86531213 86532094 86531213 ID=cds.MS.gene33465.t1;Parent=MS.gene33465.t1
Gene Sequence

>MS.gene33465

ATGGGTAAGGAAAAGGTTCACATTAACATTGTTGTCATTGGCCATGTCGACTCTGGGAAGTCAACTACCACTGGTCACTTGATCTACAAGCTTGGAGGTATTGACAAGCGTGTGATTGAGAGGTTTGAGAAAGAAGCTGCTGAGATGAACAAGCGTTCATTCAAGTATGCTTGGGTTCTTGACAAGCTCAAGGCTGAGCGTGAAAGAGGTATCACAATTGACATTGCTCTGTGGAAGTTTGAGACAACTAAGTACTACTGCACTGTCATTGATGCCCCCGGACACAGAGATTTCATTAAGAACATGATTACTGGTACATCCCAAGCTGATTGTGCTGTTCTCATCATTGATTCCACCACTGGTGGTTTTGAAGCTGGTATTTCCAAGGATGGTCAGACCCGTGAACATGCTCTCCTTGCTTTCACTCTTGGTGTGAGGCAAATGATCTGCTGCTGCAACAAGGTATTTGAACTGTTAAATTTTTTGATGCCCCTCTTTAGTTGCATTTGATTATTTTTATAGTTAGTTTATACAAGTACTGATTTTTTGATATCTTGAACAGATGGATGCCACTACACCCAAGTACTCCAAGAGCAGGTATGATGAAATTGTGAAGGAAGTTTCATCCTATATGAAGAAGGTTGGCTATAACCCAGATAAAATTCCATTTGTTCCCATCTCTGGTTTTGAGGGAGATAACATGATTGAGCGCTCTACAAATCTTGACTGGTACAAGGGCCCAACACTTCTTGAGGCTCTTGATCAAATAAATGAGCCTAAGAGGCCATCAGACAAGCCCCTCCGACTACCACTTCAGGATGTCTACAAGATTGGAGGAATTGGAACTGTTCCTGTCGGACGTGTTGAGACTGGTACCATGAAACCTGGAATGGTGGTGACTTTTGCTCCAACTGGACTGCAAACTGAAGTCAAGTCTGTGGAGATGCATCATGAATCTCTCACTGAGGCACTTCCCGGTGACAATGTGGGATTTAATGTTAAGAATGTTTCTGTCAAGGATCTCAAGCGTGGTTATGTTGCCTCAAACACCAAGGATGACCCTGCCAAGGAGGCTGCTAACTTCACATCTCAAGTGATTATCATGAATCACCCTGGCCAGATTGGAAATGGCTATGCCCCTGTGCTTGACTGCCACACCTCCCACATTGCTGTCAAGTTTGCTGAGCTCGTTACTAAGATTGACAGGCGTTCTGGTAAGGAGATCGAGAAGGAGCCCAAGTTCCTGAAGAATGGAGACGCTGGTATTATTAAGATGATTCCCACCAAGCCCATGGTTGTTGAGACTTTCTCTGAATATCCTCCACTTGGCCGTTTTGCTGTCAGAGATATGCGTCAAACTGTGGCTGTTGGGGTTATCAAGGGTGTGGAGAAGAAGGAACCTGGCACTGTTAAGATAACTAAGTCAGCAGCCAAGAAGAAATGA
Protein sequence

>MS.gene33465.t1

MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVRQMICCCNKMDATTPKYSKSRYDEIVKEVSSYMKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGTMKPGMVVTFAPTGLQTEVKSVEMHHESLTEALPGDNVGFNVKNVSVKDLKRGYVASNTKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKEIEKEPKFLKNGDAGIIKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKGVEKKEPGTVKITKSAAKKK