Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33472.t1 | AFK33457.1 | 60 | 190 | 57 | 4 | 1 | 173 | 1 | 188 | 2.00E-45 | 192.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33472.t1 | Q32LL2 | 45.3 | 128 | 68 | 2 | 44 | 171 | 33 | 158 | 7.6e-22 | 105.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33472.t1 | A0A396IWD4 | 60.0 | 190 | 57 | 4 | 1 | 173 | 1 | 188 | 1.4e-45 | 192.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055634 | MS.gene33472 | 0.809993 | 1.44E-50 | -1.69E-46 |
| MS.gene057148 | MS.gene33472 | 0.816408 | 5.62E-52 | -1.69E-46 |
| MS.gene059026 | MS.gene33472 | 0.853474 | 2.33E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33472.t1 | MTR_3g093220 | 61.074 | 149 | 53 | 3 | 28 | 173 | 35 | 181 | 8.24e-54 | 177 |
| MS.gene33472.t1 | MTR_3g093140 | 34.902 | 255 | 109 | 5 | 1 | 199 | 1 | 254 | 8.06e-35 | 124 |
| MS.gene33472.t1 | MTR_3g093120 | 40.541 | 185 | 91 | 5 | 1 | 172 | 96 | 274 | 9.26e-30 | 115 |
| MS.gene33472.t1 | MTR_3g093180 | 40.411 | 146 | 69 | 3 | 1 | 129 | 1 | 145 | 2.26e-23 | 93.2 |
| MS.gene33472.t1 | MTR_2g064800 | 45.570 | 79 | 42 | 1 | 46 | 124 | 64 | 141 | 4.70e-17 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33472.t1 | AT4G27585 | 53.947 | 152 | 66 | 3 | 22 | 171 | 34 | 183 | 8.92e-48 | 162 |
| MS.gene33472.t1 | AT5G54100 | 55.725 | 131 | 56 | 2 | 41 | 171 | 98 | 226 | 6.51e-43 | 149 |
Find 56 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCAAACCTTCAACGTATA+TGG | 0.196415 | 4.3:+83445430 | None:intergenic |
| TTATTCTCCACAACTACTTT+TGG | 0.242500 | 4.3:-83445209 | MS.gene33472:CDS |
| AACGCTCGATGCAAAGATTT+TGG | 0.248278 | 4.3:-83445178 | MS.gene33472:intron |
| ATGCAATCTTACGGAATAAA+AGG | 0.260551 | 4.3:+83443948 | None:intergenic |
| AAATTACTCCTCCGTTCAAT+TGG | 0.344181 | 4.3:-83445640 | MS.gene33472:CDS |
| GTTGAATGACATCATCATAA+AGG | 0.353425 | 4.3:+83445268 | None:intergenic |
| TTCCTCAAAATGGTAGGGTT+TGG | 0.361967 | 4.3:-83443990 | MS.gene33472:CDS |
| CAACAAGAGGGATCAAATAA+TGG | 0.362347 | 4.3:+83445537 | None:intergenic |
| TGACTACAAGTTCCTCAAAA+TGG | 0.373649 | 4.3:-83444000 | MS.gene33472:CDS |
| AGGGATCAAATAATGGATTC+CGG | 0.377265 | 4.3:+83445544 | None:intergenic |
| AAGTGCGATTCTCGCTGAAT+TGG | 0.379009 | 4.3:+83445827 | None:intergenic |
| AGCAAACCTTCAACGTATAT+GGG | 0.387015 | 4.3:+83445431 | None:intergenic |
| TCCTGTACTTGCTTCTTATG+AGG | 0.398231 | 4.3:-83445301 | MS.gene33472:CDS |
| AATTACTCCTCCGTTCAATT+GGG | 0.398483 | 4.3:-83445639 | MS.gene33472:CDS |
| CGACGCCGCCGCCAAGGATT+GGG | 0.407366 | 4.3:+83445794 | None:intergenic |
| TTATGATGATGTCATTCAAC+TGG | 0.408703 | 4.3:-83445265 | MS.gene33472:CDS |
| GGGATCAAATAATGGATTCC+GGG | 0.438866 | 4.3:+83445545 | None:intergenic |
| ACGACGCCGCCGCCAAGGAT+TGG | 0.440800 | 4.3:+83445793 | None:intergenic |
| TTCTTCACAGCTGTCGAGCC+AGG | 0.441291 | 4.3:-83445758 | MS.gene33472:intron |
| TGAATTGGATTTCAAAATGT+TGG | 0.446168 | 4.3:+83445842 | None:intergenic |
| TTGAATGACATCATCATAAA+GGG | 0.456161 | 4.3:+83445269 | None:intergenic |
| CGGAATAAAAGGTCTAAGAA+AGG | 0.474270 | 4.3:+83443959 | None:intergenic |
| GCAATGACATTCTGTTTATG+AGG | 0.475436 | 4.3:+83444078 | None:intergenic |
| TCCTTTCCCAAAAGTAGTTG+TGG | 0.482236 | 4.3:+83445202 | None:intergenic |
| TTCCATCACCCAATCCTTGG+CGG | 0.493689 | 4.3:-83445802 | MS.gene33472:CDS |
| TGGTTCCATCACCCAATCCT+TGG | 0.497489 | 4.3:-83445805 | MS.gene33472:CDS |
| TATGGGGACATTATCCTTAG+TGG | 0.504839 | 4.3:+83445448 | None:intergenic |
| GGAATAAAAGGTCTAAGAAA+GGG | 0.514759 | 4.3:+83443960 | None:intergenic |
| AATGTCCCCATATACGTTGA+AGG | 0.523280 | 4.3:-83445437 | MS.gene33472:CDS |
| ATTACTCCTCCGTTCAATTG+GGG | 0.531901 | 4.3:-83445638 | MS.gene33472:CDS |
| GGAGGACGACGCCGCCGCCA+AGG | 0.539666 | 4.3:+83445788 | None:intergenic |
| TGCTCACCTTGCTACCACTA+AGG | 0.546637 | 4.3:-83445462 | MS.gene33472:CDS |
| ACCTCATAAGAAGCAAGTAC+AGG | 0.549466 | 4.3:+83445300 | None:intergenic |
| TTAAGTTGCAAAACCGTGGT+TGG | 0.550173 | 4.3:+83444056 | None:intergenic |
| TTAGTGGTAGCAAGGTGAGC+AGG | 0.552114 | 4.3:+83445464 | None:intergenic |
| TACTCCTCCGTTCAATTGGG+GGG | 0.568985 | 4.3:-83445636 | MS.gene33472:CDS |
| TACAAGTTCCTCAAAATGGT+AGG | 0.575921 | 4.3:-83443996 | MS.gene33472:CDS |
| ACAAGTTCCTCAAAATGGTA+GGG | 0.577133 | 4.3:-83443995 | MS.gene33472:CDS |
| CATCACCCAATCCTTGGCGG+CGG | 0.586028 | 4.3:-83445799 | MS.gene33472:CDS |
| GTGTACATTATTGAGCGATA+CGG | 0.586615 | 4.3:-83445590 | MS.gene33472:CDS |
| CATTATCCTTAGTGGTAGCA+AGG | 0.589535 | 4.3:+83445456 | None:intergenic |
| CGCCGCCAAGGATTGGGTGA+TGG | 0.591762 | 4.3:+83445800 | None:intergenic |
| AATGCGTAGTCAAGTCGGTA+AGG | 0.593531 | 4.3:-83445232 | MS.gene33472:CDS |
| TTACTCCTCCGTTCAATTGG+GGG | 0.600597 | 4.3:-83445637 | MS.gene33472:CDS |
| ACCGACTTGACTACGCATTG+TGG | 0.604609 | 4.3:+83445236 | None:intergenic |
| TAAGCAATTCTATCAACAAG+AGG | 0.607348 | 4.3:+83445524 | None:intergenic |
| AATTCAGCGAGAATCGCACT+TGG | 0.625061 | 4.3:-83445825 | MS.gene33472:CDS |
| ACCACAATGCGTAGTCAAGT+CGG | 0.632581 | 4.3:-83445237 | MS.gene33472:CDS |
| TGAGTTAAGTTGCAAAACCG+TGG | 0.636144 | 4.3:+83444052 | None:intergenic |
| CAGAATGTCATTGCCAACCA+CGG | 0.639409 | 4.3:-83444069 | MS.gene33472:CDS |
| AAGCAATTCTATCAACAAGA+GGG | 0.648716 | 4.3:+83445525 | None:intergenic |
| GCAAACCTTCAACGTATATG+GGG | 0.650332 | 4.3:+83445432 | None:intergenic |
| ATCAAATAATGGATTCCGGG+TGG | 0.660823 | 4.3:+83445548 | None:intergenic |
| ACAGCTGTGAAGAAATCGAA+CGG | 0.670521 | 4.3:+83445767 | None:intergenic |
| TATGTCAAGACTCTTCCACC+CGG | 0.699326 | 4.3:-83445563 | MS.gene33472:CDS |
| GCTGTGAAGAAATCGAACGG+AGG | 0.752434 | 4.3:+83445770 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTATTGATATAATCTC+TGG | - | chr4.3:83445218-83445237 | MS.gene33472:CDS | 15.0% |
| !! | CACTTCAAAAAAATAAAAAA+AGG | + | chr4.3:83444413-83444432 | None:intergenic | 15.0% |
| !! | CTTATGAATTGAAATAAATA+GGG | + | chr4.3:83445468-83445487 | None:intergenic | 15.0% |
| !! | TCTTATGAATTGAAATAAAT+AGG | + | chr4.3:83445469-83445488 | None:intergenic | 15.0% |
| !!! | ATTGGATTGAATTTTTTATT+AGG | - | chr4.3:83444132-83444151 | MS.gene33472:intron | 15.0% |
| !!! | CTTTTTTTATTTTTTTGAAG+TGG | - | chr4.3:83444411-83444430 | MS.gene33472:intron | 15.0% |
| !!! | TTGGATTGAATTTTTTATTA+GGG | - | chr4.3:83444133-83444152 | MS.gene33472:intron | 15.0% |
| !! | CAATTTCATTCTCATTAATA+AGG | - | chr4.3:83444068-83444087 | MS.gene33472:CDS | 20.0% |
| !!! | ATTTTTTTGAAGTGGAAAAT+TGG | - | chr4.3:83444419-83444438 | MS.gene33472:intron | 20.0% |
| ! | ATCTTATCCAAATAACAGAA+TGG | - | chr4.3:83445422-83445441 | MS.gene33472:CDS | 25.0% |
| ! | CTAGTTGACATTAATATATC+TGG | + | chr4.3:83444840-83444859 | None:intergenic | 25.0% |
| ! | TGAATTGGATTTCAAAATGT+TGG | + | chr4.3:83443963-83443982 | None:intergenic | 25.0% |
| ! | TTGAATGACATCATCATAAA+GGG | + | chr4.3:83444536-83444555 | None:intergenic | 25.0% |
| !! | TGGTGGTAATTTATATTTTC+TGG | + | chr4.3:83444933-83444952 | None:intergenic | 25.0% |
| !! | TTCTGTTATTTGGATAAGAT+TGG | + | chr4.3:83445422-83445441 | None:intergenic | 25.0% |
| !!! | ACTTCAGTTTTAAGTTGTTT+CGG | - | chr4.3:83444717-83444736 | MS.gene33472:intron | 25.0% |
| !!! | TTTTCGAGTAAAAAGAACTA+TGG | + | chr4.3:83444805-83444824 | None:intergenic | 25.0% |
| AAAACGGTTGAATTTGAAAG+TGG | + | chr4.3:83445161-83445180 | None:intergenic | 30.0% | |
| AAACGGTTGAATTTGAAAGT+GGG | + | chr4.3:83445160-83445179 | None:intergenic | 30.0% | |
| AAGCAATTCTATCAACAAGA+GGG | + | chr4.3:83444280-83444299 | None:intergenic | 30.0% | |
| ATCAGTAAGACGTCTAATTA+AGG | + | chr4.3:83445637-83445656 | None:intergenic | 30.0% | |
| CATAGTCATTAGTCACTTAT+TGG | - | chr4.3:83445668-83445687 | MS.gene33472:intron | 30.0% | |
| CCTAATGATTATACCTTTCA+TGG | - | chr4.3:83444682-83444701 | MS.gene33472:intron | 30.0% | |
| GGAATAAAAGGTCTAAGAAA+GGG | + | chr4.3:83445845-83445864 | None:intergenic | 30.0% | |
| GTTGAATGACATCATCATAA+AGG | + | chr4.3:83444537-83444556 | None:intergenic | 30.0% | |
| TAACTAAATGCTACCATGAA+AGG | + | chr4.3:83444698-83444717 | None:intergenic | 30.0% | |
| TAAGCAATTCTATCAACAAG+AGG | + | chr4.3:83444281-83444300 | None:intergenic | 30.0% | |
| TAATGAGAATGAAATTGACC+TGG | + | chr4.3:83444065-83444084 | None:intergenic | 30.0% | |
| TGTACCAGTTTCTTTCAAAA+CGG | + | chr4.3:83445177-83445196 | None:intergenic | 30.0% | |
| TGTAGTAAGACGTCTAATTA+AGG | + | chr4.3:83445611-83445630 | None:intergenic | 30.0% | |
| TGTTCGAGGAGAAAAAATAT+TGG | + | chr4.3:83445035-83445054 | None:intergenic | 30.0% | |
| TTCTACTCTCCAAAACTATT+GGG | - | chr4.3:83445117-83445136 | MS.gene33472:intron | 30.0% | |
| TTTCTACTCTCCAAAACTAT+TGG | - | chr4.3:83445116-83445135 | MS.gene33472:intron | 30.0% | |
| ! | ATTGATATAATCTCTGGAGA+AGG | - | chr4.3:83445224-83445243 | MS.gene33472:CDS | 30.0% |
| ! | CCATGAAAGGTATAATCATT+AGG | + | chr4.3:83444685-83444704 | None:intergenic | 30.0% |
| ! | TTATGATGATGTCATTCAAC+TGG | - | chr4.3:83444537-83444556 | MS.gene33472:intron | 30.0% |
| ! | TTATTCTCCACAACTACTTT+TGG | - | chr4.3:83444593-83444612 | MS.gene33472:intron | 30.0% |
| !! | TATTCTCCACAACTACTTTT+GGG | - | chr4.3:83444594-83444613 | MS.gene33472:intron | 30.0% |
| !!! | AGTTTTGGAGAGTAGAAATA+AGG | + | chr4.3:83445114-83445133 | None:intergenic | 30.0% |
| !!! | GTTTTGGAGAGTAGAAATAA+GGG | + | chr4.3:83445113-83445132 | None:intergenic | 30.0% |
| !!! | TGAAGGTTTGCTTTTTTTTG+AGG | - | chr4.3:83444382-83444401 | MS.gene33472:intron | 30.0% |
| AAACCAAGCTATCGAATTCT+TGG | + | chr4.3:83445392-83445411 | None:intergenic | 35.0% | |
| AAATTACTCCTCCGTTCAAT+TGG | - | chr4.3:83444162-83444181 | MS.gene33472:intron | 35.0% | |
| AACTGCACACATAAGCATAA+TGG | - | chr4.3:83445535-83445554 | MS.gene33472:CDS | 35.0% | |
| AAGCAAACCTTCAACGTATA+TGG | + | chr4.3:83444375-83444394 | None:intergenic | 35.0% | |
| AAGCTATCGAATTCTTGGAA+GGG | + | chr4.3:83445387-83445406 | None:intergenic | 35.0% | |
| AAGTGACTAATGACTATGTG+AGG | + | chr4.3:83445666-83445685 | None:intergenic | 35.0% | |
| AATTACTCCTCCGTTCAATT+GGG | - | chr4.3:83444163-83444182 | MS.gene33472:intron | 35.0% | |
| ACAAGTTCCTCAAAATGGTA+GGG | - | chr4.3:83445807-83445826 | MS.gene33472:CDS | 35.0% | |
| ACAGGTCATCTCTATTTGAA+AGG | + | chr4.3:83444992-83445011 | None:intergenic | 35.0% | |
| AGCAAACCTTCAACGTATAT+GGG | + | chr4.3:83444374-83444393 | None:intergenic | 35.0% | |
| CAACAAGAGGGATCAAATAA+TGG | + | chr4.3:83444268-83444287 | None:intergenic | 35.0% | |
| CAGGTCATCTCTATTTGAAA+GGG | + | chr4.3:83444991-83445010 | None:intergenic | 35.0% | |
| CATGAACAATAGAACAAGCA+CGG | - | chr4.3:83445321-83445340 | MS.gene33472:intron | 35.0% | |
| CGGAATAAAAGGTCTAAGAA+AGG | + | chr4.3:83445846-83445865 | None:intergenic | 35.0% | |
| CTAATATAACTACTGCTGCA+TGG | + | chr4.3:83444884-83444903 | None:intergenic | 35.0% | |
| CTAATTAAGGTTTCGTCCAA+GGG | + | chr4.3:83445598-83445617 | None:intergenic | 35.0% | |
| GCAATGACATTCTGTTTATG+AGG | + | chr4.3:83445727-83445746 | None:intergenic | 35.0% | |
| GTGTACATTATTGAGCGATA+CGG | - | chr4.3:83444212-83444231 | MS.gene33472:intron | 35.0% | |
| TAATTAAGGTTTCGTCCAAG+GGG | + | chr4.3:83445597-83445616 | None:intergenic | 35.0% | |
| TACAAGTTCCTCAAAATGGT+AGG | - | chr4.3:83445806-83445825 | MS.gene33472:CDS | 35.0% | |
| TCTAATTAAGGTTTCGTCCA+AGG | + | chr4.3:83445599-83445618 | None:intergenic | 35.0% | |
| TGAAATAAATAGGGAAGCTG+TGG | + | chr4.3:83445459-83445478 | None:intergenic | 35.0% | |
| TGACTACAAGTTCCTCAAAA+TGG | - | chr4.3:83445802-83445821 | MS.gene33472:CDS | 35.0% | |
| ! | AAACTGACCAAAGTCAGTTT+TGG | - | chr4.3:83445562-83445581 | MS.gene33472:CDS | 35.0% |
| !! | AGGGATCAAATAATGGATTC+CGG | + | chr4.3:83444261-83444280 | None:intergenic | 35.0% |
| !! | ATTTTGAGGAACTTGTAGTC+AGG | + | chr4.3:83445803-83445822 | None:intergenic | 35.0% |
| !!! | AGTTTTAAGTTGTTTCGGAC+TGG | - | chr4.3:83444722-83444741 | MS.gene33472:intron | 35.0% |
| !!! | TCAACCGTTTTGAAAGAAAC+TGG | - | chr4.3:83445170-83445189 | MS.gene33472:intron | 35.0% |
| !!! | TGTGTTTTTAGTGCAGATTG+TGG | - | chr4.3:83444477-83444496 | MS.gene33472:intron | 35.0% |
| AATGTCCCCATATACGTTGA+AGG | - | chr4.3:83444365-83444384 | MS.gene33472:intron | 40.0% | |
| ACAGCTGTGAAGAAATCGAA+CGG | + | chr4.3:83444038-83444057 | None:intergenic | 40.0% | |
| ACCTCATAAGAAGCAAGTAC+AGG | + | chr4.3:83444505-83444524 | None:intergenic | 40.0% | |
| ATTACTCCTCCGTTCAATTG+GGG | - | chr4.3:83444164-83444183 | MS.gene33472:intron | 40.0% | |
| CAAGCTATCGAATTCTTGGA+AGG | + | chr4.3:83445388-83445407 | None:intergenic | 40.0% | |
| CATTATCCTTAGTGGTAGCA+AGG | + | chr4.3:83444349-83444368 | None:intergenic | 40.0% | |
| CTTCCAAGAATTCGATAGCT+TGG | - | chr4.3:83445386-83445405 | MS.gene33472:intron | 40.0% | |
| GCAAACCTTCAACGTATATG+GGG | + | chr4.3:83444373-83444392 | None:intergenic | 40.0% | |
| TATGGGGACATTATCCTTAG+TGG | + | chr4.3:83444357-83444376 | None:intergenic | 40.0% | |
| TCCTGTACTTGCTTCTTATG+AGG | - | chr4.3:83444501-83444520 | MS.gene33472:intron | 40.0% | |
| TCCTTTCCCAAAAGTAGTTG+TGG | + | chr4.3:83444603-83444622 | None:intergenic | 40.0% | |
| TGAATTTGAAAGTGGGTGTG+TGG | + | chr4.3:83445153-83445172 | None:intergenic | 40.0% | |
| TTACCACCAAAACTAGTCCT+TGG | - | chr4.3:83444944-83444963 | MS.gene33472:intron | 40.0% | |
| TTCCTCAAAATGGTAGGGTT+TGG | - | chr4.3:83445812-83445831 | MS.gene33472:CDS | 40.0% | |
| ! | AACGCTCGATGCAAAGATTT+TGG | - | chr4.3:83444624-83444643 | MS.gene33472:intron | 40.0% |
| ! | AACTGACTTTGGTCAGTTTG+TGG | + | chr4.3:83445561-83445580 | None:intergenic | 40.0% |
| ! | AGTAGAAATAAGGGTGTAGC+AGG | + | chr4.3:83445104-83445123 | None:intergenic | 40.0% |
| ! | AGTGAATGGCCCAATAGTTT+TGG | + | chr4.3:83445129-83445148 | None:intergenic | 40.0% |
| ! | ATCCAAACCCTACCATTTTG+AGG | + | chr4.3:83445817-83445836 | None:intergenic | 40.0% |
| ! | GAGAAGACCAAAACTGACTT+TGG | + | chr4.3:83445572-83445591 | None:intergenic | 40.0% |
| ! | TGAGTTAAGTTGCAAAACCG+TGG | + | chr4.3:83445753-83445772 | None:intergenic | 40.0% |
| ! | TTAAGTTGCAAAACCGTGGT+TGG | + | chr4.3:83445749-83445768 | None:intergenic | 40.0% |
| !! | ATCAAATAATGGATTCCGGG+TGG | + | chr4.3:83444257-83444276 | None:intergenic | 40.0% |
| !! | GGGATCAAATAATGGATTCC+GGG | + | chr4.3:83444260-83444279 | None:intergenic | 40.0% |
| !! | TCCACAACTACTTTTGGGAA+AGG | - | chr4.3:83444599-83444618 | MS.gene33472:intron | 40.0% |
| !!! | GTAGTTCCAAGGACTAGTTT+TGG | + | chr4.3:83444953-83444972 | None:intergenic | 40.0% |
| !!! | TTTGTTTTGCAGACGCTAAC+AGG | + | chr4.3:83445010-83445029 | None:intergenic | 40.0% |
| AAATAGGGAAGCTGTGGCAA+AGG | + | chr4.3:83445453-83445472 | None:intergenic | 45.0% | |
| AACACAACCCCCCAATTGAA+CGG | + | chr4.3:83444176-83444195 | None:intergenic | 45.0% | |
| AAGTGCGATTCTCGCTGAAT+TGG | + | chr4.3:83443978-83443997 | None:intergenic | 45.0% | |
| AATAGGGAAGCTGTGGCAAA+GGG | + | chr4.3:83445452-83445471 | None:intergenic | 45.0% | |
| AATGCGTAGTCAAGTCGGTA+AGG | - | chr4.3:83444570-83444589 | MS.gene33472:intron | 45.0% | |
| AATTCAGCGAGAATCGCACT+TGG | - | chr4.3:83443977-83443996 | MS.gene33472:CDS | 45.0% | |
| ACCACAATGCGTAGTCAAGT+CGG | - | chr4.3:83444565-83444584 | MS.gene33472:intron | 45.0% | |
| CAGAATGTCATTGCCAACCA+CGG | - | chr4.3:83445733-83445752 | MS.gene33472:intron | 45.0% | |
| GCAAGACTTGGAATTTCTCG+AGG | + | chr4.3:83445358-83445377 | None:intergenic | 45.0% | |
| TATGTCAAGACTCTTCCACC+CGG | - | chr4.3:83444239-83444258 | MS.gene33472:intron | 45.0% | |
| TTACTCCTCCGTTCAATTGG+GGG | - | chr4.3:83444165-83444184 | MS.gene33472:intron | 45.0% | |
| ! | AAATCACGTACAAGTGCTGC+TGG | + | chr4.3:83445059-83445078 | None:intergenic | 45.0% |
| ! | GAAAGGGCTTTGTCCTATGA+GGG | + | chr4.3:83444975-83444994 | None:intergenic | 45.0% |
| ! | TGAAAGGGCTTTGTCCTATG+AGG | + | chr4.3:83444976-83444995 | None:intergenic | 45.0% |
| !!! | GTTCCAAGGACTAGTTTTGG+TGG | + | chr4.3:83444950-83444969 | None:intergenic | 45.0% |
| !!! | TTTGTTTTTATTAATTTAAT+TGG | - | chr4.3:83444114-83444133 | MS.gene33472:intron | 5.0% |
| GCTGTGAAGAAATCGAACGG+AGG | + | chr4.3:83444035-83444054 | None:intergenic | 50.0% | |
| GGAGCTGTGAGAACTGAGAA+AGG | + | chr4.3:83445706-83445725 | None:intergenic | 50.0% | |
| GGGAGGGCCATTCTGTTATT+TGG | + | chr4.3:83445432-83445451 | None:intergenic | 50.0% | |
| GTCCTATGAGGGTAGTTCCA+AGG | + | chr4.3:83444964-83444983 | None:intergenic | 50.0% | |
| GTCCTTGGAACTACCCTCAT+AGG | - | chr4.3:83444959-83444978 | MS.gene33472:intron | 50.0% | |
| TACTCCTCCGTTCAATTGGG+GGG | - | chr4.3:83444166-83444185 | MS.gene33472:intron | 50.0% | |
| TGCTCACCTTGCTACCACTA+AGG | - | chr4.3:83444340-83444359 | MS.gene33472:intron | 50.0% | |
| TGGTTCCATCACCCAATCCT+TGG | - | chr4.3:83443997-83444016 | MS.gene33472:CDS | 50.0% | |
| TTAGTGGTAGCAAGGTGAGC+AGG | + | chr4.3:83444341-83444360 | None:intergenic | 50.0% | |
| TTCCATCACCCAATCCTTGG+CGG | - | chr4.3:83444000-83444019 | MS.gene33472:CDS | 50.0% | |
| ! | AAGCCAAATCTAGCTCCGCT+CGG | - | chr4.3:83444749-83444768 | MS.gene33472:intron | 50.0% |
| ! | AGTGGGTGTGTGGTAGTGAA+TGG | + | chr4.3:83445143-83445162 | None:intergenic | 50.0% |
| !! | ACCGACTTGACTACGCATTG+TGG | + | chr4.3:83444569-83444588 | None:intergenic | 50.0% |
| !! | CTATGGTGTCGCCTGCTTAA+TGG | + | chr4.3:83444788-83444807 | None:intergenic | 50.0% |
| !! | GCGGAGCTAGATTTGGCTTT+AGG | + | chr4.3:83444748-83444767 | None:intergenic | 50.0% |
| !! | TGTCGCCTGCTTAATGGACT+CGG | + | chr4.3:83444782-83444801 | None:intergenic | 50.0% |
| !! | TTTTGGTCTTCTCTGCCCCT+TGG | - | chr4.3:83445579-83445598 | MS.gene33472:CDS | 50.0% |
| ACAACCCCCCAATTGAACGG+AGG | + | chr4.3:83444173-83444192 | None:intergenic | 55.0% | |
| GAAGGGAGAGACGCAAGACT+TGG | + | chr4.3:83445370-83445389 | None:intergenic | 55.0% | |
| GATCCGAGCGGAGCTAGATT+TGG | + | chr4.3:83444755-83444774 | None:intergenic | 55.0% | |
| TTCTTCACAGCTGTCGAGCC+AGG | - | chr4.3:83444044-83444063 | MS.gene33472:CDS | 55.0% | |
| ! | CAAGTGCTGCTGGATGTTCG+AGG | + | chr4.3:83445049-83445068 | None:intergenic | 55.0% |
| !! | CCTGCTTAATGGACTCGGGT+CGG | + | chr4.3:83444777-83444796 | None:intergenic | 55.0% |
| !! | GTCGCCTGCTTAATGGACTC+GGG | + | chr4.3:83444781-83444800 | None:intergenic | 55.0% |
| AGGGAAGCTGTGGCAAAGGG+AGG | + | chr4.3:83445449-83445468 | None:intergenic | 60.0% | |
| CATCACCCAATCCTTGGCGG+CGG | - | chr4.3:83444003-83444022 | MS.gene33472:CDS | 60.0% | |
| CCGACCCGAGTCCATTAAGC+AGG | - | chr4.3:83444774-83444793 | MS.gene33472:intron | 60.0% | |
| GGGAAGCTGTGGCAAAGGGA+GGG | + | chr4.3:83445448-83445467 | None:intergenic | 60.0% | |
| CGCCGCCAAGGATTGGGTGA+TGG | + | chr4.3:83444005-83444024 | None:intergenic | 65.0% | |
| ACGACGCCGCCGCCAAGGAT+TGG | + | chr4.3:83444012-83444031 | None:intergenic | 70.0% | |
| CGACGCCGCCGCCAAGGATT+GGG | + | chr4.3:83444011-83444030 | None:intergenic | 70.0% | |
| GGACTCGGGTCGGATCCGAG+CGG | + | chr4.3:83444767-83444786 | None:intergenic | 70.0% | |
| ! | GGAGGACGACGCCGCCGCCA+AGG | + | chr4.3:83444017-83444036 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 83443956 | 83445868 | 83443956 | ID=MS.gene33472 |
| chr4.3 | mRNA | 83443956 | 83445868 | 83443956 | ID=MS.gene33472.t1;Parent=MS.gene33472 |
| chr4.3 | exon | 83445759 | 83445868 | 83445759 | ID=MS.gene33472.t1.exon1;Parent=MS.gene33472.t1 |
| chr4.3 | CDS | 83445759 | 83445868 | 83445759 | ID=cds.MS.gene33472.t1;Parent=MS.gene33472.t1 |
| chr4.3 | exon | 83445421 | 83445670 | 83445421 | ID=MS.gene33472.t1.exon2;Parent=MS.gene33472.t1 |
| chr4.3 | CDS | 83445421 | 83445670 | 83445421 | ID=cds.MS.gene33472.t1;Parent=MS.gene33472.t1 |
| chr4.3 | exon | 83445179 | 83445331 | 83445179 | ID=MS.gene33472.t1.exon3;Parent=MS.gene33472.t1 |
| chr4.3 | CDS | 83445179 | 83445331 | 83445179 | ID=cds.MS.gene33472.t1;Parent=MS.gene33472.t1 |
| chr4.3 | exon | 83443956 | 83444111 | 83443956 | ID=MS.gene33472.t1.exon4;Parent=MS.gene33472.t1 |
| chr4.3 | CDS | 83443956 | 83444111 | 83443956 | ID=cds.MS.gene33472.t1;Parent=MS.gene33472.t1 |
| Gene Sequence |
| Protein sequence |
