Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33516.t1 | XP_003602138.1 | 96 | 176 | 7 | 0 | 1 | 176 | 191 | 366 | 4.50E-91 | 344.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33516.t1 | Q84VY3 | 72.2 | 180 | 46 | 1 | 1 | 176 | 212 | 391 | 2.2e-70 | 267.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33516.t1 | G7J5N5 | 96.0 | 176 | 7 | 0 | 1 | 176 | 191 | 366 | 3.2e-91 | 344.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050298 | MS.gene33516 | 0.802982 | 4.33E-49 | -1.69E-46 |
| MS.gene050563 | MS.gene33516 | 0.800434 | 1.44E-48 | -1.69E-46 |
| MS.gene050587 | MS.gene33516 | 0.832824 | 7.58E-56 | -1.69E-46 |
| MS.gene053383 | MS.gene33516 | 0.846921 | 1.60E-59 | -1.69E-46 |
| MS.gene05456 | MS.gene33516 | 0.827872 | 1.23E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33516.t1 | MTR_3g090020 | 96.023 | 176 | 7 | 0 | 1 | 176 | 191 | 366 | 1.25e-120 | 351 |
| MS.gene33516.t1 | MTR_3g090100 | 91.477 | 176 | 15 | 0 | 1 | 176 | 191 | 366 | 2.72e-114 | 335 |
| MS.gene33516.t1 | MTR_3g089025 | 82.386 | 176 | 31 | 0 | 1 | 176 | 194 | 369 | 8.31e-105 | 311 |
| MS.gene33516.t1 | MTR_3g090010 | 76.437 | 174 | 41 | 0 | 1 | 174 | 195 | 368 | 6.57e-94 | 283 |
| MS.gene33516.t1 | MTR_1g029150 | 74.860 | 179 | 42 | 1 | 1 | 176 | 212 | 390 | 3.26e-93 | 282 |
| MS.gene33516.t1 | MTR_4g087440 | 62.712 | 177 | 65 | 1 | 1 | 176 | 217 | 393 | 7.75e-78 | 243 |
| MS.gene33516.t1 | MTR_5g024130 | 62.712 | 177 | 65 | 1 | 1 | 176 | 217 | 393 | 8.72e-78 | 243 |
| MS.gene33516.t1 | MTR_3g090110 | 50.000 | 118 | 36 | 1 | 20 | 137 | 1 | 95 | 4.90e-31 | 113 |
| MS.gene33516.t1 | MTR_3g089980 | 60.204 | 98 | 26 | 1 | 40 | 137 | 6 | 90 | 1.07e-28 | 106 |
| MS.gene33516.t1 | MTR_3g089973 | 40.541 | 148 | 44 | 3 | 20 | 167 | 1 | 104 | 5.66e-23 | 91.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33516.t1 | AT1G43800 | 72.222 | 180 | 46 | 1 | 1 | 176 | 212 | 391 | 1.41e-89 | 273 |
| MS.gene33516.t1 | AT3G02630 | 62.500 | 176 | 64 | 1 | 1 | 174 | 219 | 394 | 2.49e-77 | 242 |
| MS.gene33516.t1 | AT5G16240 | 61.932 | 176 | 65 | 1 | 1 | 174 | 217 | 392 | 1.62e-76 | 239 |
| MS.gene33516.t1 | AT2G43710 | 59.887 | 177 | 70 | 1 | 1 | 176 | 225 | 401 | 5.00e-75 | 236 |
| MS.gene33516.t1 | AT2G43710 | 59.887 | 177 | 70 | 1 | 1 | 176 | 225 | 401 | 5.69e-75 | 236 |
| MS.gene33516.t1 | AT5G16230 | 59.777 | 179 | 68 | 2 | 2 | 176 | 147 | 325 | 1.22e-73 | 230 |
| MS.gene33516.t1 | AT3G02610 | 60.221 | 181 | 66 | 2 | 2 | 176 | 231 | 411 | 4.33e-73 | 231 |
| MS.gene33516.t1 | AT3G02610 | 60.221 | 181 | 66 | 2 | 2 | 176 | 233 | 413 | 4.34e-73 | 231 |
| MS.gene33516.t1 | AT5G16230 | 59.777 | 179 | 68 | 2 | 2 | 176 | 223 | 401 | 5.65e-73 | 231 |
| MS.gene33516.t1 | AT3G02620 | 59.116 | 181 | 68 | 2 | 2 | 176 | 147 | 327 | 5.23e-72 | 226 |
| MS.gene33516.t1 | AT3G02620 | 59.116 | 181 | 68 | 2 | 2 | 176 | 223 | 403 | 1.37e-71 | 227 |
| MS.gene33516.t1 | AT3G02620 | 59.116 | 181 | 68 | 2 | 2 | 176 | 226 | 406 | 1.51e-71 | 227 |
Find 63 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCGAGGCTTTGCCTTAAA+AGG | 0.260973 | 3.3:-75715784 | MS.gene33516:CDS |
| AATCTTGTGCTGCATCATTT+TGG | 0.299305 | 3.3:+75716367 | None:intergenic |
| CTGGGTTTGTGCTGGTGTTT+CGG | 0.312327 | 3.3:-75715710 | MS.gene33516:intron |
| TAAATTCGACCAATGCTAAA+TGG | 0.327070 | 3.3:+75714668 | None:intergenic |
| GTGGACTTGCACCTAGATTA+AGG | 0.352719 | 3.3:-75716151 | MS.gene33516:CDS |
| TTCCTTATATAGGCAATAGT+TGG | 0.365399 | 3.3:-75715892 | MS.gene33516:intron |
| TGGTGCTGCTGGGTTTGTGC+TGG | 0.392563 | 3.3:-75715718 | MS.gene33516:CDS |
| CTTGATTAGACGATGGAGAT+TGG | 0.392791 | 3.3:-75716225 | MS.gene33516:CDS |
| TCTGCGGTGGCACAACGTAT+TGG | 0.420320 | 3.3:-75716287 | MS.gene33516:CDS |
| TTGGGATCAACTTGTCTTGG+TGG | 0.429243 | 3.3:-75715873 | MS.gene33516:CDS |
| AGTACTATGCAACTGCTTAG+TGG | 0.437826 | 3.3:+75714637 | None:intergenic |
| TCTTCTAGTTTCCTTAATCT+AGG | 0.439715 | 3.3:+75716140 | None:intergenic |
| GTGTGGTGGAGATCACGTTT+TGG | 0.451668 | 3.3:-75715738 | MS.gene33516:CDS |
| TCCTTATATAGGCAATAGTT+GGG | 0.455240 | 3.3:-75715891 | MS.gene33516:intron |
| AGATCAACAACAAATTTACT+TGG | 0.459272 | 3.3:-75716094 | MS.gene33516:CDS |
| CTCGTACTTGCACGCGTATG+CGG | 0.473722 | 3.3:-75716488 | MS.gene33516:CDS |
| GGCTTTGCCTTAAAAGGTAG+AGG | 0.474861 | 3.3:-75715778 | MS.gene33516:CDS |
| TAGCATTGGTCGAATTTACA+TGG | 0.474987 | 3.3:-75714663 | MS.gene33516:CDS |
| GCTTATCGTGGCGTTGGCTG+TGG | 0.476623 | 3.3:-75715851 | MS.gene33516:CDS |
| AGTGGATCCCACCGAGGCTA+TGG | 0.482931 | 3.3:-75716399 | MS.gene33516:CDS |
| GCAGGCAGCTCGGTGAAGCT+TGG | 0.484429 | 3.3:-75714430 | MS.gene33516:CDS |
| GGCTATGGCCACCATAGCCT+CGG | 0.489653 | 3.3:+75716388 | None:intergenic |
| TGGAGATTGGAGAAGCTTGA+GGG | 0.490817 | 3.3:-75716212 | MS.gene33516:CDS |
| TCTCTTTAGCCAACCTACCT+AGG | 0.494048 | 3.3:+75716519 | None:intergenic |
| AACCTGAAAATACCAGCTTC+TGG | 0.516071 | 3.3:+75714454 | None:intergenic |
| TTGGTGGCTTATCGTGGCGT+TGG | 0.518551 | 3.3:-75715857 | MS.gene33516:CDS |
| TCGTACTTGCACGCGTATGC+GGG | 0.518633 | 3.3:-75716487 | MS.gene33516:CDS |
| CCCGCTCACTTGATGCATGA+TGG | 0.529067 | 3.3:-75716338 | MS.gene33516:CDS |
| CATGATTCTCAGCCAGAAGC+TGG | 0.530999 | 3.3:-75714466 | MS.gene33516:intron |
| TATTTCGCACCATTTAGCAT+TGG | 0.532219 | 3.3:-75714677 | MS.gene33516:CDS |
| CCATCATGCATCAAGTGAGC+GGG | 0.549039 | 3.3:+75716338 | None:intergenic |
| TAGTTGGGATCAACTTGTCT+TGG | 0.551844 | 3.3:-75715876 | MS.gene33516:CDS |
| AAATGTGGCTCGCTCTTGAA+AGG | 0.555847 | 3.3:+75716556 | None:intergenic |
| TATGATGGTGTTGGAATCCG+AGG | 0.557955 | 3.3:-75715799 | MS.gene33516:CDS |
| GGATCCCACCGAGGCTATGG+TGG | 0.562827 | 3.3:-75716396 | MS.gene33516:CDS |
| TTTCAGGTTGGCAGGCAGCT+CGG | 0.563680 | 3.3:-75714440 | MS.gene33516:CDS |
| TCGTGGCGTTGGCTGTGGAA+AGG | 0.563913 | 3.3:-75715846 | MS.gene33516:CDS |
| ATGGAGATTGGAGAAGCTTG+AGG | 0.564413 | 3.3:-75716213 | MS.gene33516:CDS |
| TGTGGAAAAGCTTCTAGAAG+TGG | 0.566245 | 3.3:-75716417 | MS.gene33516:CDS |
| TATGGCCACCATAGCCTCGG+TGG | 0.570103 | 3.3:+75716391 | None:intergenic |
| TTGGTGGCCTGGTTGTGTGG+TGG | 0.577655 | 3.3:-75715752 | MS.gene33516:CDS |
| CTTGTCTTGGTGGCTTATCG+TGG | 0.578157 | 3.3:-75715863 | MS.gene33516:CDS |
| TTTGTAGGGCAGCTCCTGCG+TGG | 0.579190 | 3.3:-75715531 | MS.gene33516:intron |
| CTTGAGGGTTTGACAAGCGA+AGG | 0.581134 | 3.3:-75716197 | MS.gene33516:CDS |
| CGCATACGCGTGCAAGTACG+AGG | 0.584480 | 3.3:+75716489 | None:intergenic |
| GTGATCTCCACCACACAACC+AGG | 0.585278 | 3.3:+75715745 | None:intergenic |
| ACACGGAAACCTAGGTAGGT+TGG | 0.591464 | 3.3:-75716528 | MS.gene33516:CDS |
| TTTGTATCACACGGAAACCT+AGG | 0.594979 | 3.3:-75716536 | MS.gene33516:CDS |
| TAGAGTTCTTGATTAGACGA+TGG | 0.605110 | 3.3:-75716232 | MS.gene33516:CDS |
| TCCATCATGCATCAAGTGAG+CGG | 0.608659 | 3.3:+75716337 | None:intergenic |
| ATGGCCACCATAGCCTCGGT+GGG | 0.619166 | 3.3:+75716392 | None:intergenic |
| CGAGCCACATTTGTATCACA+CGG | 0.623581 | 3.3:-75716545 | MS.gene33516:CDS |
| GTAGGGCAGCTCCTGCGTGG+AGG | 0.626304 | 3.3:-75715528 | MS.gene33516:intron |
| GGTAGGTTGGCTAAAGAGAG+AGG | 0.635441 | 3.3:-75716515 | MS.gene33516:CDS |
| TCCTCACATATGCATTCTCG+TGG | 0.635762 | 3.3:+75716441 | None:intergenic |
| TATCACACGGAAACCTAGGT+AGG | 0.636743 | 3.3:-75716532 | MS.gene33516:CDS |
| CTCGTGGCGCTTCTCATCAG+CGG | 0.641370 | 3.3:+75716457 | None:intergenic |
| GAATGCATATGTGAGGATTG+TGG | 0.642224 | 3.3:-75716435 | MS.gene33516:CDS |
| CATGCACAAGAGTTCGTGTG+TGG | 0.649922 | 3.3:-75716170 | MS.gene33516:CDS |
| TTGCCTCAAAACCTCCACGC+AGG | 0.657366 | 3.3:+75715517 | None:intergenic |
| GCCACGAGAATGCATATGTG+AGG | 0.667191 | 3.3:-75716442 | MS.gene33516:CDS |
| GTTTCCGTGTGATACAAATG+TGG | 0.700218 | 3.3:+75716541 | None:intergenic |
| TCTAGAAGTGGATCCCACCG+AGG | 0.721401 | 3.3:-75716405 | MS.gene33516:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+TGG | - | chr3.3:75715251-75715270 | MS.gene33516:intron | 0.0% |
| !!! | AATCTTTTTTTTTTTTTGAA+TGG | - | chr3.3:75715225-75715244 | MS.gene33516:intron | 10.0% |
| !! | AAAAAAAAAAAAACTTGTCT+TGG | - | chr3.3:75715070-75715089 | MS.gene33516:intron | 15.0% |
| !! | ACAAAATTCTGAATATTTAT+AGG | - | chr3.3:75715496-75715515 | MS.gene33516:intron | 15.0% |
| !! | CAAAATTCTGAATATTTATA+GGG | - | chr3.3:75715497-75715516 | MS.gene33516:intron | 15.0% |
| !! | CTGAATAAATTAAAAATGTT+TGG | - | chr3.3:75716502-75716521 | MS.gene33516:CDS | 15.0% |
| !! | TTGAACAATTATTTACAATA+GGG | + | chr3.3:75716252-75716271 | None:intergenic | 15.0% |
| !! | AAAGTAAATTAAACATTGAG+AGG | + | chr3.3:75714296-75714315 | None:intergenic | 20.0% |
| !! | AAGAGTTTAATTACCATAAA+AGG | - | chr3.3:75716218-75716237 | MS.gene33516:CDS | 20.0% |
| !! | ACATAAACAAAAATTCATAG+CGG | + | chr3.3:75715757-75715776 | None:intergenic | 20.0% |
| !! | AGAGTTTAATTACCATAAAA+GGG | - | chr3.3:75716219-75716238 | MS.gene33516:CDS | 20.0% |
| !! | GTTGAACAATTATTTACAAT+AGG | + | chr3.3:75716253-75716272 | None:intergenic | 20.0% |
| !! | TATAGAATTTATATGCATTC+TGG | - | chr3.3:75715788-75715807 | MS.gene33516:CDS | 20.0% |
| !! | TGGAAAAAAAACAAATACAA+GGG | + | chr3.3:75714992-75715011 | None:intergenic | 20.0% |
| !!! | AAAGTGTGATTTTATTTTGT+AGG | - | chr3.3:75715465-75715484 | MS.gene33516:intron | 20.0% |
| !!! | AAGTGTGATTTTATTTTGTA+GGG | - | chr3.3:75715466-75715485 | MS.gene33516:intron | 20.0% |
| !!! | AGTAAACAACTTTTAATTGT+AGG | - | chr3.3:75715591-75715610 | MS.gene33516:intron | 20.0% |
| !!! | ATATTTTCTAACTTAAGATG+TGG | + | chr3.3:75716030-75716049 | None:intergenic | 20.0% |
| !!! | TTAACCCTAGTTTTTAATTA+TGG | - | chr3.3:75715533-75715552 | MS.gene33516:intron | 20.0% |
| ! | AAAAAAAAAACTTGTCTTGG+TGG | - | chr3.3:75715073-75715092 | MS.gene33516:intron | 25.0% |
| ! | AAACAAATACAAGGGAAAAT+CGG | + | chr3.3:75714984-75715003 | None:intergenic | 25.0% |
| ! | AACCATCAGATTCAATTTAA+TGG | - | chr3.3:75715382-75715401 | MS.gene33516:intron | 25.0% |
| ! | AGATCAACAACAAATTTACT+TGG | - | chr3.3:75714230-75714249 | MS.gene33516:intron | 25.0% |
| ! | AGCAGCAATCATTTATTATA+TGG | + | chr3.3:75716305-75716324 | None:intergenic | 25.0% |
| ! | ATAAAAAAGACAAGAAGGAA+TGG | + | chr3.3:75714508-75714527 | None:intergenic | 25.0% |
| ! | GATGCCATAATTAAAAACTA+GGG | + | chr3.3:75715540-75715559 | None:intergenic | 25.0% |
| ! | GTGGAAAAAAAACAAATACA+AGG | + | chr3.3:75714993-75715012 | None:intergenic | 25.0% |
| ! | TAAAAAAGACAAGAAGGAAT+GGG | + | chr3.3:75714507-75714526 | None:intergenic | 25.0% |
| ! | TGATTGTAAAAAAGAAAAGC+TGG | + | chr3.3:75716453-75716472 | None:intergenic | 25.0% |
| ! | TGCATTAACTAATTCTAACT+TGG | + | chr3.3:75715099-75715118 | None:intergenic | 25.0% |
| ! | TTGTTGTAATATGATGTTGT+GGG | - | chr3.3:75714384-75714403 | MS.gene33516:intron | 25.0% |
| !! | TGATTTTCTTGTCTTTATAC+AGG | - | chr3.3:75714316-75714335 | MS.gene33516:intron | 25.0% |
| !! | TTTGTTGTAATATGATGTTG+TGG | - | chr3.3:75714383-75714402 | MS.gene33516:intron | 25.0% |
| !!! | AAATTCATAGCGGATAAATA+TGG | + | chr3.3:75715747-75715766 | None:intergenic | 25.0% |
| AAAAAAGACAAGAAGGAATG+GGG | + | chr3.3:75714506-75714525 | None:intergenic | 30.0% | |
| ACAAAGCAAGACAATTAATG+AGG | + | chr3.3:75714873-75714892 | None:intergenic | 30.0% | |
| AGTCCATGTGATGTTATATA+GGG | + | chr3.3:75715443-75715462 | None:intergenic | 30.0% | |
| ATTGAATTTGACCTGCTTAA+CGG | + | chr3.3:75716424-75716443 | None:intergenic | 30.0% | |
| CATTAATTGTCTTGCTTTGT+TGG | - | chr3.3:75714873-75714892 | MS.gene33516:intron | 30.0% | |
| CCATCATAAAAAAGACAAGA+AGG | + | chr3.3:75714513-75714532 | None:intergenic | 30.0% | |
| GGATGCCATAATTAAAAACT+AGG | + | chr3.3:75715541-75715560 | None:intergenic | 30.0% | |
| GTAAATTAAACATTGAGAGG+CGG | + | chr3.3:75714293-75714312 | None:intergenic | 30.0% | |
| GTTTAATTACCATAAAAGGG+AGG | - | chr3.3:75716222-75716241 | MS.gene33516:CDS | 30.0% | |
| TAAATTCGACCAATGCTAAA+TGG | + | chr3.3:75715659-75715678 | None:intergenic | 30.0% | |
| TAGTCCATGTGATGTTATAT+AGG | + | chr3.3:75715444-75715463 | None:intergenic | 30.0% | |
| TCAGATTCAATTTAATGGCA+AGG | - | chr3.3:75715387-75715406 | MS.gene33516:intron | 30.0% | |
| TCCTTATATAGGCAATAGTT+GGG | - | chr3.3:75714433-75714452 | MS.gene33516:CDS | 30.0% | |
| TGAACGATGTTTCCTTATAT+AGG | - | chr3.3:75714422-75714441 | MS.gene33516:intron | 30.0% | |
| TGAAGCAATATTCTCACTAT+TGG | + | chr3.3:75715179-75715198 | None:intergenic | 30.0% | |
| TGCCATTAAATTGAATCTGA+TGG | + | chr3.3:75715387-75715406 | None:intergenic | 30.0% | |
| TGTTAGCAATTAGCAGAAAA+TGG | + | chr3.3:75715840-75715859 | None:intergenic | 30.0% | |
| TTCCTTATATAGGCAATAGT+TGG | - | chr3.3:75714432-75714451 | MS.gene33516:CDS | 30.0% | |
| !! | TCTTCTAGTTTCCTTAATCT+AGG | + | chr3.3:75714187-75714206 | None:intergenic | 30.0% |
| !! | TTGCTTTTCTCTTTTTGGAT+TGG | - | chr3.3:75714658-75714677 | MS.gene33516:CDS | 30.0% |
| !! | TTTGTTTAGGGTGGTTTTTA+GGG | - | chr3.3:75714927-75714946 | MS.gene33516:intron | 30.0% |
| !!! | ATTTTGTTGTTCCGTTTTAG+CGG | - | chr3.3:75714902-75714921 | MS.gene33516:intron | 30.0% |
| !!! | CCTTCTTGTCTTTTTTATGA+TGG | - | chr3.3:75714510-75714529 | MS.gene33516:intron | 30.0% |
| !!! | TGTCTTTTTTATGATGGTGT+TGG | - | chr3.3:75714516-75714535 | MS.gene33516:intron | 30.0% |
| !!! | TTTTCTCTTTTTGGATTGGT+AGG | - | chr3.3:75714662-75714681 | MS.gene33516:CDS | 30.0% |
| AAAAAGACAAGAAGGAATGG+GGG | + | chr3.3:75714505-75714524 | None:intergenic | 35.0% | |
| AAAACAAACAAACTCCACAC+AGG | + | chr3.3:75714741-75714760 | None:intergenic | 35.0% | |
| ATAATTGAAGTCCGTTAAGC+AGG | - | chr3.3:75716410-75716429 | MS.gene33516:CDS | 35.0% | |
| CAATAGATAAGAGTTCTCAC+TGG | + | chr3.3:75715338-75715357 | None:intergenic | 35.0% | |
| CTAATTATACACTAAGGCCA+AGG | + | chr3.3:75714849-75714868 | None:intergenic | 35.0% | |
| TACAAATCCACAATTCAAGC+AGG | + | chr3.3:75715571-75715590 | None:intergenic | 35.0% | |
| TAGAGTTCTTGATTAGACGA+TGG | - | chr3.3:75714092-75714111 | MS.gene33516:intron | 35.0% | |
| TATTTCGCACCATTTAGCAT+TGG | - | chr3.3:75715647-75715666 | MS.gene33516:intron | 35.0% | |
| TCCAAAAAGAGAAAAGCAAC+AGG | + | chr3.3:75714657-75714676 | None:intergenic | 35.0% | |
| TCCCAACTATTGCCTATATA+AGG | + | chr3.3:75714437-75714456 | None:intergenic | 35.0% | |
| TGAGCTGGAATAATCTTAGA+TGG | + | chr3.3:75716109-75716128 | None:intergenic | 35.0% | |
| TGAGGCCTAATTATACACTA+AGG | + | chr3.3:75714855-75714874 | None:intergenic | 35.0% | |
| TGGAAGAAACTTAGTCATCA+AGG | + | chr3.3:75715159-75715178 | None:intergenic | 35.0% | |
| ! | AAAAATGATCGAAGAAGCGT+GGG | + | chr3.3:75714018-75714037 | None:intergenic | 35.0% |
| ! | AAAGATTGAGCATCGTAAGA+TGG | + | chr3.3:75715212-75715231 | None:intergenic | 35.0% |
| ! | AATCTTGTGCTGCATCATTT+TGG | + | chr3.3:75713960-75713979 | None:intergenic | 35.0% |
| ! | CAACAAGTCACATTCTTTTG+AGG | + | chr3.3:75715977-75715996 | None:intergenic | 35.0% |
| ! | CCAAAAACCTCTACCTTTTA+AGG | + | chr3.3:75714556-75714575 | None:intergenic | 35.0% |
| ! | CCTTAAAAGGTAGAGGTTTT+TGG | - | chr3.3:75714553-75714572 | MS.gene33516:intron | 35.0% |
| !! | CTTCTTCGATCATTTTTCTG+CGG | - | chr3.3:75714021-75714040 | MS.gene33516:intron | 35.0% |
| !! | CTTGGCCTTAGTGTATAATT+AGG | - | chr3.3:75714847-75714866 | MS.gene33516:intron | 35.0% |
| !! | GTTTGTTTAGGGTGGTTTTT+AGG | - | chr3.3:75714926-75714945 | MS.gene33516:intron | 35.0% |
| !! | TAAAAGGTAGAGGTTTTTGG+TGG | - | chr3.3:75714556-75714575 | MS.gene33516:intron | 35.0% |
| !! | TAGCATTGGTCGAATTTACA+TGG | - | chr3.3:75715661-75715680 | MS.gene33516:intron | 35.0% |
| !! | TTGGTGGTTCTTTTTGTTGT+TGG | - | chr3.3:75714685-75714704 | MS.gene33516:CDS | 35.0% |
| !! | TTGTTTAGGGTGGTTTTTAG+GGG | - | chr3.3:75714928-75714947 | MS.gene33516:intron | 35.0% |
| !!! | GTGGAGTTTGTTTGTTTTTG+TGG | - | chr3.3:75714743-75714762 | MS.gene33516:intron | 35.0% |
| !!! | TCCTGTTGCTTTTCTCTTTT+TGG | - | chr3.3:75714653-75714672 | MS.gene33516:CDS | 35.0% |
| !!! | TGGTGGTTCTTTTTGTTGTT+GGG | - | chr3.3:75714686-75714705 | MS.gene33516:CDS | 35.0% |
| !!! | TGTTGTTTTTGGGGTTTGTA+GGG | - | chr3.3:75714779-75714798 | MS.gene33516:intron | 35.0% |
| AACCTGAAAATACCAGCTTC+TGG | + | chr3.3:75715873-75715892 | None:intergenic | 40.0% | |
| AGTACTATGCAACTGCTTAG+TGG | + | chr3.3:75715690-75715709 | None:intergenic | 40.0% | |
| ATCGGTTGCCATAATAACAC+CGG | + | chr3.3:75714966-75714985 | None:intergenic | 40.0% | |
| CCACCCTATATAACATCACA+TGG | - | chr3.3:75715437-75715456 | MS.gene33516:intron | 40.0% | |
| CCATGTGATGTTATATAGGG+TGG | + | chr3.3:75715440-75715459 | None:intergenic | 40.0% | |
| CTAAACAAACGCCGCTAAAA+CGG | + | chr3.3:75714916-75714935 | None:intergenic | 40.0% | |
| CTTGATTAGACGATGGAGAT+TGG | - | chr3.3:75714099-75714118 | MS.gene33516:intron | 40.0% | |
| GAAAAATGATCGAAGAAGCG+TGG | + | chr3.3:75714019-75714038 | None:intergenic | 40.0% | |
| GAATGCATATGTGAGGATTG+TGG | - | chr3.3:75713889-75713908 | MS.gene33516:intron | 40.0% | |
| GTTTCCGTGTGATACAAATG+TGG | + | chr3.3:75713786-75713805 | None:intergenic | 40.0% | |
| TAGTTGGGATCAACTTGTCT+TGG | - | chr3.3:75714448-75714467 | MS.gene33516:CDS | 40.0% | |
| TTATTCCAGCTCAAAGTGCA+TGG | - | chr3.3:75716116-75716135 | MS.gene33516:CDS | 40.0% | |
| TTTGTATCACACGGAAACCT+AGG | - | chr3.3:75713788-75713807 | MS.gene33516:intron | 40.0% | |
| ! | TGTGGAAAAGCTTCTAGAAG+TGG | - | chr3.3:75713907-75713926 | MS.gene33516:intron | 40.0% |
| ! | TTGGAGTGTTTGTTACGTGT+GGG | - | chr3.3:75714709-75714728 | MS.gene33516:CDS | 40.0% |
| !! | GTTTTAGCGGCGTTTGTTTA+GGG | - | chr3.3:75714915-75714934 | MS.gene33516:intron | 40.0% |
| !!! | AGAAGCTGGTATTTTCAGGT+TGG | - | chr3.3:75715872-75715891 | MS.gene33516:CDS | 40.0% |
| !!! | CTCTTTTTGGATTGGTAGGT+TGG | - | chr3.3:75714666-75714685 | MS.gene33516:CDS | 40.0% |
| !!! | GGTTCTTTTTGTTGTTGGGT+TGG | - | chr3.3:75714690-75714709 | MS.gene33516:CDS | 40.0% |
| !!! | GTGTTGTTTTTGGGGTTTGT+AGG | - | chr3.3:75714778-75714797 | MS.gene33516:intron | 40.0% |
| !!! | TACCTTTTAAGGCAAAGCCT+CGG | + | chr3.3:75714545-75714564 | None:intergenic | 40.0% |
| !!! | TTTTTGGATTGGTAGGTTGG+TGG | - | chr3.3:75714669-75714688 | MS.gene33516:CDS | 40.0% |
| AAATGTGGCTCGCTCTTGAA+AGG | + | chr3.3:75713771-75713790 | None:intergenic | 45.0% | |
| ACAATTCAAGCAGGTACGTG+TGG | + | chr3.3:75715562-75715581 | None:intergenic | 45.0% | |
| ACACGTACCTGCTTGAATTG+TGG | - | chr3.3:75715561-75715580 | MS.gene33516:intron | 45.0% | |
| ATCCGAGGCTTTGCCTTAAA+AGG | - | chr3.3:75714540-75714559 | MS.gene33516:intron | 45.0% | |
| ATGGAGATTGGAGAAGCTTG+AGG | - | chr3.3:75714111-75714130 | MS.gene33516:intron | 45.0% | |
| CAAGATGCACTAACAAGCTC+GGG | + | chr3.3:75715015-75715034 | None:intergenic | 45.0% | |
| CGAGCCACATTTGTATCACA+CGG | - | chr3.3:75713779-75713798 | MS.gene33516:intron | 45.0% | |
| CTTGTTAGTGCATCTTGCAC+GGG | - | chr3.3:75715018-75715037 | MS.gene33516:intron | 45.0% | |
| GCAAGATGCACTAACAAGCT+CGG | + | chr3.3:75715016-75715035 | None:intergenic | 45.0% | |
| GGCGGCTATAAAACTTCACA+AGG | + | chr3.3:75714275-75714294 | None:intergenic | 45.0% | |
| GGCTTTGCCTTAAAAGGTAG+AGG | - | chr3.3:75714546-75714565 | MS.gene33516:intron | 45.0% | |
| GTGGACTTGCACCTAGATTA+AGG | - | chr3.3:75714173-75714192 | MS.gene33516:intron | 45.0% | |
| TATCACACGGAAACCTAGGT+AGG | - | chr3.3:75713792-75713811 | MS.gene33516:intron | 45.0% | |
| TCCATCATGCATCAAGTGAG+CGG | + | chr3.3:75713990-75714009 | None:intergenic | 45.0% | |
| TCCTCACATATGCATTCTCG+TGG | + | chr3.3:75713886-75713905 | None:intergenic | 45.0% | |
| TCTCTTTAGCCAACCTACCT+AGG | + | chr3.3:75713808-75713827 | None:intergenic | 45.0% | |
| TGGAGATTGGAGAAGCTTGA+GGG | - | chr3.3:75714112-75714131 | MS.gene33516:intron | 45.0% | |
| TTGGGATCAACTTGTCTTGG+TGG | - | chr3.3:75714451-75714470 | MS.gene33516:CDS | 45.0% | |
| ! | AGCCAGAAGCTGGTATTTTC+AGG | - | chr3.3:75715868-75715887 | MS.gene33516:CDS | 45.0% |
| ! | GCTTGTTAGTGCATCTTGCA+CGG | - | chr3.3:75715017-75715036 | MS.gene33516:intron | 45.0% |
| ! | GTTGGAGTGTTTGTTACGTG+TGG | - | chr3.3:75714708-75714727 | MS.gene33516:CDS | 45.0% |
| ! | TAGGGTACACCTCCCTTTTA+TGG | + | chr3.3:75716234-75716253 | None:intergenic | 45.0% |
| ! | TATGATGGTGTTGGAATCCG+AGG | - | chr3.3:75714525-75714544 | MS.gene33516:intron | 45.0% |
| ! | TTAGGGGTTTTTGTTCGAGC+CGG | - | chr3.3:75714944-75714963 | MS.gene33516:intron | 45.0% |
| !! | CGTTTTAGCGGCGTTTGTTT+AGG | - | chr3.3:75714914-75714933 | MS.gene33516:intron | 45.0% |
| !! | CTTCGATCATTTTTCTGCGG+TGG | - | chr3.3:75714024-75714043 | MS.gene33516:intron | 45.0% |
| !! | TGTTCGAGCCGGTGTTATTA+TGG | - | chr3.3:75714955-75714974 | MS.gene33516:intron | 45.0% |
| !!! | CCTGGCTGTGTGTTGTTTTT+GGG | - | chr3.3:75714769-75714788 | MS.gene33516:intron | 45.0% |
| !!! | CTGGCTGTGTGTTGTTTTTG+GGG | - | chr3.3:75714770-75714789 | MS.gene33516:intron | 45.0% |
| !!! | GTGCTGCATCATTTTGGCTA+TGG | + | chr3.3:75713954-75713973 | None:intergenic | 45.0% |
| !!! | TGTTTGTTTTTGTGGCAGCC+TGG | - | chr3.3:75714751-75714770 | MS.gene33516:intron | 45.0% |
| !!! | GTTTTTTTTTTTTTTTTAAA+CGG | + | chr3.3:75715064-75715083 | None:intergenic | 5.0% |
| ACAAGCCATGCACTTTGAGC+TGG | + | chr3.3:75716124-75716143 | None:intergenic | 50.0% | |
| ACACGGAAACCTAGGTAGGT+TGG | - | chr3.3:75713796-75713815 | MS.gene33516:intron | 50.0% | |
| CATGATTCTCAGCCAGAAGC+TGG | - | chr3.3:75715858-75715877 | MS.gene33516:CDS | 50.0% | |
| CATGCACAAGAGTTCGTGTG+TGG | - | chr3.3:75714154-75714173 | MS.gene33516:intron | 50.0% | |
| CCATCATGCATCAAGTGAGC+GGG | + | chr3.3:75713989-75714008 | None:intergenic | 50.0% | |
| CCCAAAAACAACACACAGCC+AGG | + | chr3.3:75714772-75714791 | None:intergenic | 50.0% | |
| CTTGAGGGTTTGACAAGCGA+AGG | - | chr3.3:75714127-75714146 | MS.gene33516:intron | 50.0% | |
| GCCACGAGAATGCATATGTG+AGG | - | chr3.3:75713882-75713901 | MS.gene33516:intron | 50.0% | |
| TTAGCGGCGTTTGTTTAGGG+TGG | - | chr3.3:75714918-75714937 | MS.gene33516:intron | 50.0% | |
| ! | CTGGGTTTGTGCTGGTGTTT+CGG | - | chr3.3:75714614-75714633 | MS.gene33516:intron | 50.0% |
| ! | CTTGTCTTGGTGGCTTATCG+TGG | - | chr3.3:75714461-75714480 | MS.gene33516:intron | 50.0% |
| ! | GGTAGGTTGGCTAAAGAGAG+AGG | - | chr3.3:75713809-75713828 | MS.gene33516:intron | 50.0% |
| !! | GTGTGGTGGAGATCACGTTT+TGG | - | chr3.3:75714586-75714605 | MS.gene33516:intron | 50.0% |
| !! | TTTTTGGTGGCCTGGTTGTG+TGG | - | chr3.3:75714569-75714588 | MS.gene33516:intron | 50.0% |
| !!! | AGATCACGTTTTGGTGCTGC+TGG | - | chr3.3:75714595-75714614 | MS.gene33516:intron | 50.0% |
| !!! | GATCACGTTTTGGTGCTGCT+GGG | - | chr3.3:75714596-75714615 | MS.gene33516:intron | 50.0% |
| !!! | GCCTGGCTGTGTGTTGTTTT+TGG | - | chr3.3:75714768-75714787 | MS.gene33516:intron | 50.0% |
| !!! | GCTGGTATTTTCAGGTTGGC+AGG | - | chr3.3:75715876-75715895 | MS.gene33516:CDS | 50.0% |
| ACATGCATCGTGTGCAGTGC+TGG | - | chr3.3:75716351-75716370 | MS.gene33516:CDS | 55.0% | |
| AGGGTATGCACTTGACGCCT+TGG | - | chr3.3:75714829-75714848 | MS.gene33516:intron | 55.0% | |
| CCCGCTCACTTGATGCATGA+TGG | - | chr3.3:75713986-75714005 | MS.gene33516:intron | 55.0% | |
| CTCGTACTTGCACGCGTATG+CGG | - | chr3.3:75713836-75713855 | MS.gene33516:intron | 55.0% | |
| GATGCACTAACAAGCTCGGG+TGG | + | chr3.3:75715012-75715031 | None:intergenic | 55.0% | |
| GTGATCTCCACCACACAACC+AGG | + | chr3.3:75714582-75714601 | None:intergenic | 55.0% | |
| TCGTACTTGCACGCGTATGC+GGG | - | chr3.3:75713837-75713856 | MS.gene33516:intron | 55.0% | |
| TCTAGAAGTGGATCCCACCG+AGG | - | chr3.3:75713919-75713938 | MS.gene33516:intron | 55.0% | |
| TCTGCGGTGGCACAACGTAT+TGG | - | chr3.3:75714037-75714056 | MS.gene33516:intron | 55.0% | |
| TTGCCTCAAAACCTCCACGC+AGG | + | chr3.3:75714810-75714829 | None:intergenic | 55.0% | |
| ! | AGTGCATCTTGCACGGGCTA+TGG | - | chr3.3:75715024-75715043 | MS.gene33516:intron | 55.0% |
| ! | TTGGTGGCTTATCGTGGCGT+TGG | - | chr3.3:75714467-75714486 | MS.gene33516:intron | 55.0% |
| !! | TTTCAGGTTGGCAGGCAGCT+CGG | - | chr3.3:75715884-75715903 | MS.gene33516:intron | 55.0% |
| !!! | GCGTGGAGGTTTTGAGGCAA+GGG | - | chr3.3:75714810-75714829 | MS.gene33516:intron | 55.0% |
| !!! | GGTAGAGGTTTTTGGTGGCC+TGG | - | chr3.3:75714561-75714580 | MS.gene33516:intron | 55.0% |
| !!! | TGCGTGGAGGTTTTGAGGCA+AGG | - | chr3.3:75714809-75714828 | MS.gene33516:intron | 55.0% |
| AGTGGATCCCACCGAGGCTA+TGG | - | chr3.3:75713925-75713944 | MS.gene33516:intron | 60.0% | |
| ATGGCCACCATAGCCTCGGT+GGG | + | chr3.3:75713935-75713954 | None:intergenic | 60.0% | |
| CGCATACGCGTGCAAGTACG+AGG | + | chr3.3:75713838-75713857 | None:intergenic | 60.0% | |
| CTCGTGGCGCTTCTCATCAG+CGG | + | chr3.3:75713870-75713889 | None:intergenic | 60.0% | |
| GGCTATGGCCACCATAGCCT+CGG | + | chr3.3:75713939-75713958 | None:intergenic | 60.0% | |
| TATGGCCACCATAGCCTCGG+TGG | + | chr3.3:75713936-75713955 | None:intergenic | 60.0% | |
| TTTGTAGGGCAGCTCCTGCG+TGG | - | chr3.3:75714793-75714812 | MS.gene33516:intron | 60.0% | |
| ! | GCTCCTGCGTGGAGGTTTTG+AGG | - | chr3.3:75714804-75714823 | MS.gene33516:intron | 60.0% |
| ! | TTGGTGGCCTGGTTGTGTGG+TGG | - | chr3.3:75714572-75714591 | MS.gene33516:intron | 60.0% |
| !! | GCTTATCGTGGCGTTGGCTG+TGG | - | chr3.3:75714473-75714492 | MS.gene33516:intron | 60.0% |
| !! | TCGTGGCGTTGGCTGTGGAA+AGG | - | chr3.3:75714478-75714497 | MS.gene33516:intron | 60.0% |
| !! | TGGTGCTGCTGGGTTTGTGC+TGG | - | chr3.3:75714606-75714625 | MS.gene33516:intron | 60.0% |
| CGTGTGGGCATGCTCCTGTG+TGG | - | chr3.3:75714724-75714743 | MS.gene33516:intron | 65.0% | |
| GGATCCCACCGAGGCTATGG+TGG | - | chr3.3:75713928-75713947 | MS.gene33516:intron | 65.0% | |
| ! | GCAGGCAGCTCGGTGAAGCT+TGG | - | chr3.3:75715894-75715913 | MS.gene33516:intron | 65.0% |
| GTAGGGCAGCTCCTGCGTGG+AGG | - | chr3.3:75714796-75714815 | MS.gene33516:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 75713749 | 75716597 | 75713749 | ID=MS.gene33516 |
| chr3.3 | mRNA | 75713749 | 75716597 | 75713749 | ID=MS.gene33516.t1;Parent=MS.gene33516 |
| chr3.3 | exon | 75716071 | 75716597 | 75716071 | ID=MS.gene33516.t1.exon1;Parent=MS.gene33516.t1 |
| chr3.3 | CDS | 75716071 | 75716597 | 75716071 | ID=cds.MS.gene33516.t1;Parent=MS.gene33516.t1 |
| chr3.3 | exon | 75715996 | 75716008 | 75715996 | ID=MS.gene33516.t1.exon2;Parent=MS.gene33516.t1 |
| chr3.3 | CDS | 75715996 | 75716008 | 75715996 | ID=cds.MS.gene33516.t1;Parent=MS.gene33516.t1 |
| chr3.3 | exon | 75715711 | 75715902 | 75715711 | ID=MS.gene33516.t1.exon3;Parent=MS.gene33516.t1 |
| chr3.3 | CDS | 75715711 | 75715902 | 75715711 | ID=cds.MS.gene33516.t1;Parent=MS.gene33516.t1 |
| chr3.3 | exon | 75715515 | 75715546 | 75715515 | ID=MS.gene33516.t1.exon4;Parent=MS.gene33516.t1 |
| chr3.3 | CDS | 75715515 | 75715546 | 75715515 | ID=cds.MS.gene33516.t1;Parent=MS.gene33516.t1 |
| chr3.3 | exon | 75714628 | 75714733 | 75714628 | ID=MS.gene33516.t1.exon5;Parent=MS.gene33516.t1 |
| chr3.3 | CDS | 75714628 | 75714733 | 75714628 | ID=cds.MS.gene33516.t1;Parent=MS.gene33516.t1 |
| chr3.3 | exon | 75714424 | 75714476 | 75714424 | ID=MS.gene33516.t1.exon6;Parent=MS.gene33516.t1 |
| chr3.3 | CDS | 75714424 | 75714476 | 75714424 | ID=cds.MS.gene33516.t1;Parent=MS.gene33516.t1 |
| chr3.3 | exon | 75713749 | 75713785 | 75713749 | ID=MS.gene33516.t1.exon7;Parent=MS.gene33516.t1 |
| chr3.3 | CDS | 75713749 | 75713785 | 75713749 | ID=cds.MS.gene33516.t1;Parent=MS.gene33516.t1 |
| Gene Sequence |
| Protein sequence |
