Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050298.t1 | XP_024625327.1 | 93.1 | 461 | 26 | 3 | 1 | 456 | 1 | 460 | 1.70E-240 | 841.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050298.t1 | Q2HTF1 | 93.1 | 461 | 26 | 3 | 1 | 456 | 1 | 460 | 1.2e-240 | 841.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050298 | MS.gene050563 | 0.814347 | 1.61E-51 | -1.69E-46 |
MS.gene050298 | MS.gene05143 | 0.816893 | 4.37E-52 | -1.69E-46 |
MS.gene050298 | MS.gene052142 | 0.822308 | 2.54E-53 | -1.69E-46 |
MS.gene050298 | MS.gene053383 | 0.838138 | 3.44E-57 | -1.69E-46 |
MS.gene050298 | MS.gene05456 | 0.816803 | 4.58E-52 | -1.69E-46 |
MS.gene050298 | MS.gene055359 | 0.808358 | 3.22E-50 | -1.69E-46 |
MS.gene050298 | MS.gene057881 | 0.86024 | 2.37E-63 | -1.69E-46 |
MS.gene050298 | MS.gene059768 | 0.838826 | 2.28E-57 | -1.69E-46 |
MS.gene050298 | MS.gene060691 | 0.847546 | 1.08E-59 | -1.69E-46 |
MS.gene050298 | MS.gene061336 | 0.8064 | 8.38E-50 | -1.69E-46 |
MS.gene050298 | MS.gene061337 | 0.801251 | 9.84E-49 | -1.69E-46 |
MS.gene050298 | MS.gene063566 | 0.804949 | 1.69E-49 | -1.69E-46 |
MS.gene050298 | MS.gene067103 | 0.802585 | 5.23E-49 | -1.69E-46 |
MS.gene050298 | MS.gene06754 | 0.805602 | 1.23E-49 | -1.69E-46 |
MS.gene050298 | MS.gene069330 | 0.850896 | 1.26E-60 | -1.69E-46 |
MS.gene050298 | MS.gene070489 | 0.806242 | 9.05E-50 | -1.69E-46 |
MS.gene050298 | MS.gene070499 | 0.890522 | 9.13E-74 | -1.69E-46 |
MS.gene050298 | MS.gene09437 | 0.856022 | 4.26E-62 | -1.69E-46 |
MS.gene050298 | MS.gene22109 | 0.84179 | 3.84E-58 | -1.69E-46 |
MS.gene050298 | MS.gene22410 | 0.823375 | 1.43E-53 | -1.69E-46 |
MS.gene050298 | MS.gene22900 | 0.831665 | 1.47E-55 | -1.69E-46 |
MS.gene050298 | MS.gene24698 | 0.888894 | 3.94E-73 | -1.69E-46 |
MS.gene050298 | MS.gene29954 | 0.829295 | 5.58E-55 | -1.69E-46 |
MS.gene050298 | MS.gene33515 | 0.82326 | 1.52E-53 | -1.69E-46 |
MS.gene050298 | MS.gene33516 | 0.802982 | 4.33E-49 | -1.69E-46 |
MS.gene050298 | MS.gene33518 | 0.825477 | 4.59E-54 | -1.69E-46 |
MS.gene050298 | MS.gene37909 | 0.817591 | 3.05E-52 | -1.69E-46 |
MS.gene050298 | MS.gene38771 | 0.802588 | 5.23E-49 | -1.69E-46 |
MS.gene050298 | MS.gene40063 | 0.852375 | 4.81E-61 | -1.69E-46 |
MS.gene050298 | MS.gene40442 | 0.825434 | 4.70E-54 | -1.69E-46 |
MS.gene050298 | MS.gene41357 | 0.809467 | 1.87E-50 | -1.69E-46 |
MS.gene050298 | MS.gene53244 | 0.812263 | 4.63E-51 | -1.69E-46 |
MS.gene050298 | MS.gene53275 | 0.846959 | 1.57E-59 | -1.69E-46 |
MS.gene050298 | MS.gene53369 | 0.814445 | 1.53E-51 | -1.69E-46 |
MS.gene050298 | MS.gene54531 | 0.803058 | 4.18E-49 | -1.69E-46 |
MS.gene050298 | MS.gene56232 | 0.821919 | 3.12E-53 | -1.69E-46 |
MS.gene050298 | MS.gene58364 | 0.816396 | 5.65E-52 | -1.69E-46 |
MS.gene050298 | MS.gene60080 | 0.852635 | 4.06E-61 | -1.69E-46 |
MS.gene050298 | MS.gene60245 | 0.852318 | 4.99E-61 | -1.69E-46 |
MS.gene050298 | MS.gene61665 | 0.855294 | 6.95E-62 | -1.69E-46 |
MS.gene050298 | MS.gene62049 | 0.845065 | 5.12E-59 | -1.69E-46 |
MS.gene050298 | MS.gene69587 | 0.849694 | 2.74E-60 | -1.69E-46 |
MS.gene050298 | MS.gene73229 | 0.854595 | 1.11E-61 | -1.69E-46 |
MS.gene050298 | MS.gene75494 | 0.831455 | 1.65E-55 | -1.69E-46 |
MS.gene050298 | MS.gene76613 | 0.802273 | 6.07E-49 | -1.69E-46 |
MS.gene050298 | MS.gene76705 | 0.829243 | 5.74E-55 | -1.69E-46 |
MS.gene050298 | MS.gene79672 | 0.800521 | 1.39E-48 | -1.69E-46 |
MS.gene050298 | MS.gene80842 | 0.816678 | 4.89E-52 | -1.69E-46 |
MS.gene050298 | MS.gene81601 | 0.807743 | 4.35E-50 | -1.69E-46 |
MS.gene050298 | MS.gene81612 | 0.846358 | 2.28E-59 | -1.69E-46 |
MS.gene050298 | MS.gene81958 | 0.805858 | 1.09E-49 | -1.69E-46 |
MS.gene050298 | MS.gene81959 | 0.811073 | 8.40E-51 | -1.69E-46 |
MS.gene050298 | MS.gene82571 | 0.811798 | 5.85E-51 | -1.69E-46 |
MS.gene050298 | MS.gene84142 | 0.816385 | 5.68E-52 | -1.69E-46 |
MS.gene050298 | MS.gene88180 | 0.873841 | 1.08E-67 | -1.69E-46 |
MS.gene050298 | MS.gene92329 | 0.864303 | 1.34E-64 | -1.69E-46 |
MS.gene050298 | MS.gene92551 | 0.81459 | 1.43E-51 | -1.69E-46 |
MS.gene050298 | MS.gene93760 | 0.808576 | 2.89E-50 | -1.69E-46 |
MS.gene050298 | MS.gene98837 | 0.824506 | 7.78E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050298.t1 | MTR_1g059760 | 52.434 | 452 | 198 | 8 | 9 | 449 | 18 | 463 | 7.81e-163 | 468 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050298.t1 | AT3G52610 | 46.467 | 467 | 221 | 12 | 9 | 452 | 13 | 473 | 3.04e-139 | 408 |
Find 102 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTCTCTCAAATCACAATTT+TGG | 0.217496 | 7.2:+8057588 | MS.gene050298:CDS |
TCATGGTTTGGGACCATCTA+TGG | 0.223620 | 7.2:+8059500 | MS.gene050298:CDS |
ATGGGGTGTGCTTCGGTTCA+TGG | 0.237066 | 7.2:+8059483 | MS.gene050298:CDS |
TGTGCTTCGGTTCATGGTTT+GGG | 0.291835 | 7.2:+8059489 | MS.gene050298:CDS |
AATAACTGCAGCGGGATTAA+TGG | 0.304334 | 7.2:+8057488 | MS.gene050298:CDS |
GTGTGCTTCGGTTCATGGTT+TGG | 0.307756 | 7.2:+8059488 | MS.gene050298:CDS |
GTCCTCAAACACCGACATTA+TGG | 0.308407 | 7.2:-8059406 | None:intergenic |
GCGATTGAGGATCTTGTTCC+TGG | 0.311297 | 7.2:+8057045 | MS.gene050298:CDS |
TCAAAGGAGGAGAAAGTCTT+TGG | 0.349274 | 7.2:+8059247 | MS.gene050298:CDS |
CGACATTATGGATGTTCTTA+AGG | 0.349557 | 7.2:-8059394 | None:intergenic |
TGTTAATAAGCTCTTGCATT+TGG | 0.357546 | 7.2:-8059596 | None:intergenic |
GCAAAGGGAAGAAACATATC+TGG | 0.359281 | 7.2:+8057070 | MS.gene050298:CDS |
TGAAAACGAGAAATATCAAT+AGG | 0.367993 | 7.2:-8056589 | None:intergenic |
GAACTAGCCAAGAGGACTTA+TGG | 0.372116 | 7.2:+8059270 | MS.gene050298:CDS |
ATCTAGCCTTCCATCCCTTA+TGG | 0.374376 | 7.2:-8059535 | None:intergenic |
ATCCATAATGTCGGTGTTTG+AGG | 0.408361 | 7.2:+8059404 | MS.gene050298:CDS |
ACCAGGGTTCTCTATGGCCT+TGG | 0.408629 | 7.2:-8059361 | None:intergenic |
AGTAAACCTAAAAGAATTAA+CGG | 0.410580 | 7.2:-8057121 | None:intergenic |
ATCCATCCCCGTTGCACTCT+AGG | 0.410966 | 7.2:+8059571 | MS.gene050298:CDS |
TTTGGTCCCTAGAGTGCAAC+GGG | 0.411997 | 7.2:-8059578 | None:intergenic |
TACGATCTTGCCACGTGTTA+CGG | 0.414492 | 7.2:-8056825 | None:intergenic |
TTATTACCCTCACTGATTGC+CGG | 0.431014 | 7.2:+8057550 | MS.gene050298:CDS |
TGTCAAACCAGGGTTCTCTA+TGG | 0.431401 | 7.2:-8059367 | None:intergenic |
CACTCCGTTGCAACAAATCA+TGG | 0.432383 | 7.2:+8056789 | MS.gene050298:CDS |
TGTTGAGGATGTTGTTCCTT+TGG | 0.434930 | 7.2:+8057023 | MS.gene050298:CDS |
CTTAAGGATGATGTCAAACC+AGG | 0.439362 | 7.2:-8059378 | None:intergenic |
ATGAAGGCTATTCTTATTGA+AGG | 0.442750 | 7.2:+8059621 | MS.gene050298:CDS |
CTTGTCATTGTTCTTAGAGT+TGG | 0.444238 | 7.2:-8059301 | None:intergenic |
AAAGCCATTCGTGGTGGCAC+TGG | 0.454895 | 7.2:+8056535 | MS.gene050298:CDS |
TGTTGTTCCTTTGGCGATTG+AGG | 0.458789 | 7.2:+8057032 | MS.gene050298:CDS |
AGGAGTGTGGGATGTAAGAA+AGG | 0.459967 | 7.2:-8056701 | None:intergenic |
CATGGTTTGGGACCATCTAT+GGG | 0.463005 | 7.2:+8059501 | MS.gene050298:CDS |
GGACTACATGGGGTGTGCTT+CGG | 0.472358 | 7.2:+8059476 | MS.gene050298:CDS |
AAGAATAGTTCTAAGAAGTA+CGG | 0.474242 | 7.2:+8057525 | MS.gene050298:CDS |
CAAAGGAGGAGAAAGTCTTT+GGG | 0.485474 | 7.2:+8059248 | MS.gene050298:CDS |
TCCATCCCCGTTGCACTCTA+GGG | 0.489654 | 7.2:+8059572 | MS.gene050298:CDS |
AAATGCTCCATAAGTCCTCT+TGG | 0.502139 | 7.2:-8059277 | None:intergenic |
TGTTTCTTCCCTTTGCGACC+AGG | 0.508762 | 7.2:-8057063 | None:intergenic |
ATGTCGACGGTTGAAACAAA+AGG | 0.509382 | 7.2:+8056478 | MS.gene050298:CDS |
TCCCTAGAGTGCAACGGGGA+TGG | 0.509671 | 7.2:-8059573 | None:intergenic |
TTCAGGGTTGTAAGCAGAGT+AGG | 0.515071 | 7.2:+8057448 | MS.gene050298:intron |
ATCTTGTTCCTGGTCGCAAA+GGG | 0.516393 | 7.2:+8057055 | MS.gene050298:CDS |
GCAACAAGAGGTTGGAGTAG+AGG | 0.526477 | 7.2:+8059455 | MS.gene050298:CDS |
CTTTGATCACGTGGTTGTTG+AGG | 0.527886 | 7.2:-8059230 | None:intergenic |
GGAGAATGTTGTTGCTGTTG+AGG | 0.528626 | 7.2:+8057008 | MS.gene050298:CDS |
AGAATAGTTCTAAGAAGTAC+GGG | 0.531546 | 7.2:+8057526 | MS.gene050298:CDS |
AATGCCAGTGCCACCACGAA+TGG | 0.537676 | 7.2:-8056539 | None:intergenic |
TTGACACCATAAGGGATGGA+AGG | 0.538475 | 7.2:+8059529 | MS.gene050298:CDS |
AGAGCTTATTAACAAGATGA+AGG | 0.539515 | 7.2:+8059605 | MS.gene050298:CDS |
GCTTACATCTAAAACCCTCT+TGG | 0.543120 | 7.2:-8057217 | None:intergenic |
GATCTTGTTCCTGGTCGCAA+AGG | 0.543662 | 7.2:+8057054 | MS.gene050298:CDS |
TGTGGAGCAATAACTGCAGC+GGG | 0.545669 | 7.2:+8057480 | MS.gene050298:CDS |
AAGGCTATTCTTATTGAAGG+TGG | 0.558507 | 7.2:+8059624 | MS.gene050298:CDS |
GAAACAAAAGGTCGTAATGT+TGG | 0.558743 | 7.2:+8056490 | MS.gene050298:CDS |
CTCAACAACCACGTGATCAA+AGG | 0.561727 | 7.2:+8059231 | MS.gene050298:CDS |
CATGAACTTTCTTATGTCCA+AGG | 0.562719 | 7.2:+8059344 | MS.gene050298:CDS |
AAAGGAGAAAATAGTGTCTG+TGG | 0.563282 | 7.2:-8056683 | None:intergenic |
AATTGTGATTTGAGAGAGGT+GGG | 0.571654 | 7.2:-8057584 | None:intergenic |
TGTTCCATGATTTGTTGCAA+CGG | 0.573358 | 7.2:-8056793 | None:intergenic |
TTTCTCCTCCTTTGATCACG+TGG | 0.576132 | 7.2:-8059239 | None:intergenic |
GGTTGGAGTAGAGGACTACA+TGG | 0.579061 | 7.2:+8059464 | MS.gene050298:CDS |
GGCAAGATGCAACAAGAGGT+TGG | 0.579461 | 7.2:+8059447 | MS.gene050298:CDS |
GAGGACACGGTGGTTGATGA+CGG | 0.580211 | 7.2:+8059423 | MS.gene050298:CDS |
AAATTGTGATTTGAGAGAGG+TGG | 0.580439 | 7.2:-8057585 | None:intergenic |
TAGCTTAAGTATTATGTCGA+CGG | 0.581330 | 7.2:+8056465 | None:intergenic |
CAAAGGGAAGAAACATATCT+GGG | 0.581978 | 7.2:+8057071 | MS.gene050298:CDS |
CCAAAATTGTGATTTGAGAG+AGG | 0.582441 | 7.2:-8057588 | None:intergenic |
TGAGAGAGGTGGGTCAAGAG+TGG | 0.586797 | 7.2:-8057574 | None:intergenic |
AGCTGGTGCAAAGCCATTCG+TGG | 0.588805 | 7.2:+8056526 | MS.gene050298:CDS |
GATCACGTGGTTGTTGAGGA+TGG | 0.593465 | 7.2:-8059226 | None:intergenic |
ACAAAAGGTCGTAATGTTGG+TGG | 0.598123 | 7.2:+8056493 | MS.gene050298:CDS |
TGGATGATGATGATGTGTTG+TGG | 0.599316 | 7.2:-8056663 | None:intergenic |
TTGGTGGCACAGAATGTAGC+TGG | 0.609381 | 7.2:+8056509 | MS.gene050298:CDS |
CTTAAGAACATCCATAATGT+CGG | 0.610419 | 7.2:+8059395 | MS.gene050298:CDS |
AAACACGTCAGTATCAATAC+CGG | 0.610554 | 7.2:-8056848 | None:intergenic |
AAATGCTAGGTCTTCACAAG+TGG | 0.613957 | 7.2:+8057167 | MS.gene050298:CDS |
AATGTCGGTGTTTGAGGACA+CGG | 0.619648 | 7.2:+8059410 | MS.gene050298:CDS |
ATTTGGTCCCTAGAGTGCAA+CGG | 0.621651 | 7.2:-8059579 | None:intergenic |
ACAAGATCCTCAATCGCCAA+AGG | 0.623888 | 7.2:-8057039 | None:intergenic |
AGTGGACCGGCAATCAGTGA+GGG | 0.635780 | 7.2:-8057556 | None:intergenic |
GTGTGGAGCAATAACTGCAG+CGG | 0.636382 | 7.2:+8057479 | MS.gene050298:CDS |
AACAACCACGTGATCAAAGG+AGG | 0.638984 | 7.2:+8059234 | MS.gene050298:CDS |
AACACGTGGCAAGATCGTAC+CGG | 0.650719 | 7.2:+8056829 | MS.gene050298:CDS |
AAGAAACATATCTGGGAGCG+TGG | 0.650935 | 7.2:+8057078 | MS.gene050298:CDS |
CAATCAAACTGATACCAAGA+GGG | 0.655063 | 7.2:+8057203 | MS.gene050298:CDS |
TCCAAGGCCATAGAGAACCC+TGG | 0.655783 | 7.2:+8059360 | MS.gene050298:CDS |
CGGCGGCAAGATGCAACAAG+AGG | 0.657442 | 7.2:+8059443 | MS.gene050298:CDS |
GTTGGAGTAGAGGACTACAT+GGG | 0.661686 | 7.2:+8059465 | MS.gene050298:CDS |
TCAATCAAACTGATACCAAG+AGG | 0.661853 | 7.2:+8057202 | MS.gene050298:CDS |
GCTTGTGTTGATGAAAGATG+AGG | 0.663457 | 7.2:+8056978 | MS.gene050298:CDS |
GAGTGGACCGGCAATCAGTG+AGG | 0.664520 | 7.2:-8057557 | None:intergenic |
CAGAGTAGGATTAAGCTGTG+TGG | 0.667291 | 7.2:+8057462 | MS.gene050298:CDS |
GAGGTGGGTCAAGAGTGGAC+CGG | 0.670737 | 7.2:-8057569 | None:intergenic |
TTAAGGATGATGTCAAACCA+GGG | 0.675705 | 7.2:-8059377 | None:intergenic |
ATGAACTGAACCGTAACACG+TGG | 0.676263 | 7.2:+8056815 | MS.gene050298:CDS |
TGGTGCAAAGCCATTCGTGG+TGG | 0.684258 | 7.2:+8056529 | MS.gene050298:CDS |
GTCTTTGGGAACTAGCCAAG+AGG | 0.697035 | 7.2:+8059262 | MS.gene050298:CDS |
TTGGAGTAGAGGACTACATG+GGG | 0.733565 | 7.2:+8059466 | MS.gene050298:CDS |
GACACGGTGGTTGATGACGG+CGG | 0.738900 | 7.2:+8059426 | MS.gene050298:CDS |
AGCATGCGATAGAACAACTG+CGG | 0.738953 | 7.2:+8056936 | MS.gene050298:CDS |
GTCGGTGTTTGAGGACACGG+TGG | 0.755614 | 7.2:+8059413 | MS.gene050298:CDS |
TTGGTCCCTAGAGTGCAACG+GGG | 0.825259 | 7.2:-8059577 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATTAATTTATGATTTTCTT+GGG | + | chr7.2:8058833-8058852 | MS.gene050298:intron | 10.0% |
!!! | TTATTAATTTATGATTTTCT+TGG | + | chr7.2:8058832-8058851 | MS.gene050298:intron | 10.0% |
!! | AAACTCTTTAAATTAATACT+CGG | - | chr7.2:8058985-8059004 | None:intergenic | 15.0% |
!! | ACTAACAAAAAAAAAAAAGA+GGG | + | chr7.2:8058150-8058169 | MS.gene050298:intron | 15.0% |
!! | CATACAAATATCAAATTAAT+TGG | - | chr7.2:8057409-8057428 | None:intergenic | 15.0% |
!!! | ACTTTTGAATGATTTTTTTA+AGG | + | chr7.2:8057879-8057898 | MS.gene050298:intron | 15.0% |
!!! | AGTTTTTCAATTTTTTACAT+TGG | + | chr7.2:8058909-8058928 | MS.gene050298:intron | 15.0% |
!!! | TATACTTTAATGAATTTTGA+AGG | - | chr7.2:8057937-8057956 | None:intergenic | 15.0% |
!!! | TCTAAAATAATAAATTTGTC+CGG | - | chr7.2:8058947-8058966 | None:intergenic | 15.0% |
!!! | TTAAAAGTTTTTCTTTTTGA+AGG | + | chr7.2:8059029-8059048 | MS.gene050298:intron | 15.0% |
!! | AAATGTTAACAAATGTCTAT+AGG | - | chr7.2:8058348-8058367 | None:intergenic | 20.0% |
!! | AACCAAACATAAAATAGATT+AGG | - | chr7.2:8057243-8057262 | None:intergenic | 20.0% |
!! | ACCAAACATAAAATAGATTA+GGG | - | chr7.2:8057242-8057261 | None:intergenic | 20.0% |
!! | ACTATACATACTAAACAAAA+AGG | + | chr7.2:8058577-8058596 | MS.gene050298:intron | 20.0% |
!! | AGTAAACCTAAAAGAATTAA+CGG | - | chr7.2:8057124-8057143 | None:intergenic | 20.0% |
!! | CACTAACAAAAAAAAAAAAG+AGG | + | chr7.2:8058149-8058168 | MS.gene050298:intron | 20.0% |
!! | CTCTATAAATTAATAATGTC+AGG | + | chr7.2:8058470-8058489 | MS.gene050298:intron | 20.0% |
!! | GAAATGAAATTTGTATTTCA+GGG | + | chr7.2:8057432-8057451 | MS.gene050298:intron | 20.0% |
!! | GATGATTTAGAAATATTGAT+AGG | + | chr7.2:8059167-8059186 | MS.gene050298:intron | 20.0% |
!! | TAAATTAATAATGTCAGGAT+CGG | + | chr7.2:8058475-8058494 | MS.gene050298:intron | 20.0% |
!! | TAGAACCATTAATATGTATA+TGG | + | chr7.2:8057700-8057719 | MS.gene050298:intron | 20.0% |
!! | TGAAATGAAATTTGTATTTC+AGG | + | chr7.2:8057431-8057450 | MS.gene050298:intron | 20.0% |
!! | TTAATGATACAAAAAATGCT+AGG | + | chr7.2:8057154-8057173 | MS.gene050298:CDS | 20.0% |
!!! | AAAAAGGCATATTTATGATA+CGG | + | chr7.2:8058593-8058612 | MS.gene050298:intron | 20.0% |
!!! | CTCATATATATGTTTGATTT+TGG | - | chr7.2:8057365-8057384 | None:intergenic | 20.0% |
!!! | CTCTTTTTTTTTTTTGTTAG+TGG | - | chr7.2:8058151-8058170 | None:intergenic | 20.0% |
!!! | TAATCTATTTTATGTTTGGT+TGG | + | chr7.2:8057242-8057261 | MS.gene050298:intron | 20.0% |
! | AAACGACTCTTTCAATTTAA+TGG | - | chr7.2:8058210-8058229 | None:intergenic | 25.0% |
! | AATAAGGAATGAATGTTGAT+TGG | - | chr7.2:8057755-8057774 | None:intergenic | 25.0% |
! | ATTTATAGAGTTTCTACTGT+AGG | - | chr7.2:8058460-8058479 | None:intergenic | 25.0% |
! | CACTTCCATATACATATTAA+TGG | - | chr7.2:8057708-8057727 | None:intergenic | 25.0% |
! | CATTAATATGTATATGGAAG+TGG | + | chr7.2:8057706-8057725 | MS.gene050298:intron | 25.0% |
! | TGAAAACGAGAAATATCAAT+AGG | - | chr7.2:8056592-8056611 | None:intergenic | 25.0% |
!! | AGAGATCCCTTTATAATTTT+CGG | - | chr7.2:8058860-8058879 | None:intergenic | 25.0% |
!! | GAGAACAGAAAATTGATTTA+TGG | + | chr7.2:8057653-8057672 | MS.gene050298:intron | 25.0% |
!!! | AAGAATAGTTCTAAGAAGTA+CGG | + | chr7.2:8057525-8057544 | MS.gene050298:CDS | 25.0% |
!!! | AAGTTTTTCTTTTTGAAGGA+AGG | + | chr7.2:8059033-8059052 | MS.gene050298:intron | 25.0% |
!!! | TTTGTTTTTTGCAAGAATGT+TGG | - | chr7.2:8056764-8056783 | None:intergenic | 25.0% |
AGAGCTTATTAACAAGATGA+AGG | + | chr7.2:8059605-8059624 | MS.gene050298:CDS | 30.0% | |
ATGAAGGCTATTCTTATTGA+AGG | + | chr7.2:8059621-8059640 | MS.gene050298:CDS | 30.0% | |
CTTAAGAACATCCATAATGT+CGG | + | chr7.2:8059395-8059414 | MS.gene050298:CDS | 30.0% | |
GTGCATATGTTTCAATGTAT+AGG | + | chr7.2:8059189-8059208 | MS.gene050298:intron | 30.0% | |
TATGCCTGATGAAAAAACAT+GGG | + | chr7.2:8056888-8056907 | MS.gene050298:CDS | 30.0% | |
TATTTATGATACGGTGTCTT+TGG | + | chr7.2:8058602-8058621 | MS.gene050298:intron | 30.0% | |
TGTTAATAAGCTCTTGCATT+TGG | - | chr7.2:8059599-8059618 | None:intergenic | 30.0% | |
TTGGGACCGAAAATTATAAA+GGG | + | chr7.2:8058851-8058870 | MS.gene050298:intron | 30.0% | |
! | ATGCAGTTTTTGCAAAATCA+TGG | - | chr7.2:8057305-8057324 | None:intergenic | 30.0% |
! | CATTTAAGATGAGATAGAGA+GGG | - | chr7.2:8057985-8058004 | None:intergenic | 30.0% |
! | GCCCTAATCTATTTTATGTT+TGG | + | chr7.2:8057238-8057257 | MS.gene050298:intron | 30.0% |
! | GGTTTTTCTTTTCACGAATA+AGG | - | chr7.2:8057771-8057790 | None:intergenic | 30.0% |
! | GTTACTCCGTTAATTCTTTT+AGG | + | chr7.2:8057115-8057134 | MS.gene050298:CDS | 30.0% |
! | TCATTTAAGATGAGATAGAG+AGG | - | chr7.2:8057986-8058005 | None:intergenic | 30.0% |
!! | AGAATAGTTCTAAGAAGTAC+GGG | + | chr7.2:8057526-8057545 | MS.gene050298:CDS | 30.0% |
!! | ATTTTGTAGTTTGTGAAGTG+AGG | - | chr7.2:8056617-8056636 | None:intergenic | 30.0% |
!! | CTTTAAAGTTCAAGTCTGTT+TGG | - | chr7.2:8058746-8058765 | None:intergenic | 30.0% |
!!! | TTTTTTGTTAGTGGATGAAG+TGG | - | chr7.2:8058142-8058161 | None:intergenic | 30.0% |
AAACACGTCAGTATCAATAC+CGG | - | chr7.2:8056851-8056870 | None:intergenic | 35.0% | |
AAAGGAGAAAATAGTGTCTG+TGG | - | chr7.2:8056686-8056705 | None:intergenic | 35.0% | |
AAATACAACACCTGAGCTAT+TGG | + | chr7.2:8058692-8058711 | MS.gene050298:intron | 35.0% | |
AAATTGTGATTTGAGAGAGG+TGG | - | chr7.2:8057588-8057607 | None:intergenic | 35.0% | |
AAGGCTATTCTTATTGAAGG+TGG | + | chr7.2:8059624-8059643 | MS.gene050298:CDS | 35.0% | |
AATTGTGATTTGAGAGAGGT+GGG | - | chr7.2:8057587-8057606 | None:intergenic | 35.0% | |
ATCAATTTCCTTGATACACG+AGG | + | chr7.2:8058404-8058423 | MS.gene050298:intron | 35.0% | |
ATCGTACAAGATTAAGTACC+GGG | + | chr7.2:8057274-8057293 | MS.gene050298:intron | 35.0% | |
CAAAGGGAAGAAACATATCT+GGG | + | chr7.2:8057071-8057090 | MS.gene050298:CDS | 35.0% | |
CAATCAAACTGATACCAAGA+GGG | + | chr7.2:8057203-8057222 | MS.gene050298:CDS | 35.0% | |
CATCGTACAAGATTAAGTAC+CGG | + | chr7.2:8057273-8057292 | MS.gene050298:intron | 35.0% | |
CATGAACTTTCTTATGTCCA+AGG | + | chr7.2:8059344-8059363 | MS.gene050298:CDS | 35.0% | |
CCAAAATTGTGATTTGAGAG+AGG | - | chr7.2:8057591-8057610 | None:intergenic | 35.0% | |
CGACATTATGGATGTTCTTA+AGG | - | chr7.2:8059397-8059416 | None:intergenic | 35.0% | |
CTATGCCTGATGAAAAAACA+TGG | + | chr7.2:8056887-8056906 | MS.gene050298:CDS | 35.0% | |
CTTGGGACCGAAAATTATAA+AGG | + | chr7.2:8058850-8058869 | MS.gene050298:intron | 35.0% | |
CTTGTCATTGTTCTTAGAGT+TGG | - | chr7.2:8059304-8059323 | None:intergenic | 35.0% | |
GAAACAAAAGGTCGTAATGT+TGG | + | chr7.2:8056490-8056509 | MS.gene050298:CDS | 35.0% | |
GATGAAAGATGAGGAAAAAG+AGG | + | chr7.2:8056987-8057006 | MS.gene050298:CDS | 35.0% | |
GTGTCAAAAATACCCATAGA+TGG | - | chr7.2:8059516-8059535 | None:intergenic | 35.0% | |
TAAATTCGCACGCAATTGTA+AGG | - | chr7.2:8058109-8058128 | None:intergenic | 35.0% | |
TATGTATATGGAAGTGGAAG+TGG | + | chr7.2:8057712-8057731 | MS.gene050298:intron | 35.0% | |
TCAATCAAACTGATACCAAG+AGG | + | chr7.2:8057202-8057221 | MS.gene050298:CDS | 35.0% | |
TTAAGGATGATGTCAAACCA+GGG | - | chr7.2:8059380-8059399 | None:intergenic | 35.0% | |
! | AGGAATGAATGTTGATTGGT+CGG | - | chr7.2:8057751-8057770 | None:intergenic | 35.0% |
! | ATTTTTGACACCATAAGGGA+TGG | + | chr7.2:8059525-8059544 | MS.gene050298:CDS | 35.0% |
! | CCTCTCTCAAATCACAATTT+TGG | + | chr7.2:8057588-8057607 | MS.gene050298:CDS | 35.0% |
! | TTTTGATCTGAGGATAGGAT+GGG | - | chr7.2:8056641-8056660 | None:intergenic | 35.0% |
!! | GATTTTGATGAAAGGAGTGT+GGG | - | chr7.2:8056716-8056735 | None:intergenic | 35.0% |
!! | GGGTATTTTTGACACCATAA+GGG | + | chr7.2:8059521-8059540 | MS.gene050298:CDS | 35.0% |
!! | TGAGACTCGATTTTGATGAA+AGG | - | chr7.2:8056724-8056743 | None:intergenic | 35.0% |
!! | TGGGTATTTTTGACACCATA+AGG | + | chr7.2:8059520-8059539 | MS.gene050298:CDS | 35.0% |
!! | TGTTCCATGATTTGTTGCAA+CGG | - | chr7.2:8056796-8056815 | None:intergenic | 35.0% |
!!! | TTTTTTACATTGGCCCAAGT+CGG | + | chr7.2:8058919-8058938 | MS.gene050298:intron | 35.0% |
AAATGCTAGGTCTTCACAAG+TGG | + | chr7.2:8057167-8057186 | MS.gene050298:CDS | 40.0% | |
AAATGCTCCATAAGTCCTCT+TGG | - | chr7.2:8059280-8059299 | None:intergenic | 40.0% | |
AATAACTGCAGCGGGATTAA+TGG | + | chr7.2:8057488-8057507 | MS.gene050298:CDS | 40.0% | |
ACAAAAGGTCGTAATGTTGG+TGG | + | chr7.2:8056493-8056512 | MS.gene050298:CDS | 40.0% | |
ATGTCGACGGTTGAAACAAA+AGG | + | chr7.2:8056478-8056497 | MS.gene050298:CDS | 40.0% | |
CAAAGGAGGAGAAAGTCTTT+GGG | + | chr7.2:8059248-8059267 | MS.gene050298:CDS | 40.0% | |
CAAAGTAACCTCGTGTATCA+AGG | - | chr7.2:8058415-8058434 | None:intergenic | 40.0% | |
CTTAAGGATGATGTCAAACC+AGG | - | chr7.2:8059381-8059400 | None:intergenic | 40.0% | |
CTTATTGCATCCAATAGCTC+AGG | - | chr7.2:8058705-8058724 | None:intergenic | 40.0% | |
CTTGATACACGAGGTTACTT+TGG | + | chr7.2:8058413-8058432 | MS.gene050298:intron | 40.0% | |
GCAAAGGGAAGAAACATATC+TGG | + | chr7.2:8057070-8057089 | MS.gene050298:CDS | 40.0% | |
TCAAAGGAGGAGAAAGTCTT+TGG | + | chr7.2:8059247-8059266 | MS.gene050298:CDS | 40.0% | |
TGAAGGTGGAAAAACATACG+AGG | + | chr7.2:8059638-8059657 | MS.gene050298:CDS | 40.0% | |
TGATGAAAAAACATGGGTGG+TGG | + | chr7.2:8056894-8056913 | MS.gene050298:CDS | 40.0% | |
TGCAAAATCATGGTGATTCC+CGG | - | chr7.2:8057295-8057314 | None:intergenic | 40.0% | |
TGTTGAGGATGTTGTTCCTT+TGG | + | chr7.2:8057023-8057042 | MS.gene050298:CDS | 40.0% | |
! | ATCCATAATGTCGGTGTTTG+AGG | + | chr7.2:8059404-8059423 | MS.gene050298:CDS | 40.0% |
! | GCTTACATCTAAAACCCTCT+TGG | - | chr7.2:8057220-8057239 | None:intergenic | 40.0% |
! | GCTTGTGTTGATGAAAGATG+AGG | + | chr7.2:8056978-8056997 | MS.gene050298:CDS | 40.0% |
! | TGACAAGCACTTTTCAGACA+TGG | + | chr7.2:8059317-8059336 | MS.gene050298:CDS | 40.0% |
! | TGGATGATGATGATGTGTTG+TGG | - | chr7.2:8056666-8056685 | None:intergenic | 40.0% |
! | TTATTACCCTCACTGATTGC+CGG | + | chr7.2:8057550-8057569 | MS.gene050298:CDS | 40.0% |
! | TTTTTACATTGGCCCAAGTC+GGG | + | chr7.2:8058920-8058939 | MS.gene050298:intron | 40.0% |
!! | CGATTTTGATGAAAGGAGTG+TGG | - | chr7.2:8056717-8056736 | None:intergenic | 40.0% |
!! | GTTTTGATCTGAGGATAGGA+TGG | - | chr7.2:8056642-8056661 | None:intergenic | 40.0% |
!! | TGGAGTTTTGATCTGAGGAT+AGG | - | chr7.2:8056646-8056665 | None:intergenic | 40.0% |
!! | TGTTGTGGAGTTTTGATCTG+AGG | - | chr7.2:8056651-8056670 | None:intergenic | 40.0% |
!!! | ACCACCCATGTTTTTTCATC+AGG | - | chr7.2:8056895-8056914 | None:intergenic | 40.0% |
AACAACCACGTGATCAAAGG+AGG | + | chr7.2:8059234-8059253 | MS.gene050298:CDS | 45.0% | |
AAGAAACATATCTGGGAGCG+TGG | + | chr7.2:8057078-8057097 | MS.gene050298:CDS | 45.0% | |
ACAAGATCCTCAATCGCCAA+AGG | - | chr7.2:8057042-8057061 | None:intergenic | 45.0% | |
AGCATGCGATAGAACAACTG+CGG | + | chr7.2:8056936-8056955 | MS.gene050298:CDS | 45.0% | |
ATCTTGTTCCTGGTCGCAAA+GGG | + | chr7.2:8057055-8057074 | MS.gene050298:CDS | 45.0% | |
ATGAACTGAACCGTAACACG+TGG | + | chr7.2:8056815-8056834 | MS.gene050298:CDS | 45.0% | |
ATTTGGTCCCTAGAGTGCAA+CGG | - | chr7.2:8059582-8059601 | None:intergenic | 45.0% | |
CACTCCGTTGCAACAAATCA+TGG | + | chr7.2:8056789-8056808 | MS.gene050298:CDS | 45.0% | |
CAGAGTAGGATTAAGCTGTG+TGG | + | chr7.2:8057462-8057481 | MS.gene050298:CDS | 45.0% | |
CTCAACAACCACGTGATCAA+AGG | + | chr7.2:8059231-8059250 | MS.gene050298:CDS | 45.0% | |
CTTTGATCACGTGGTTGTTG+AGG | - | chr7.2:8059233-8059252 | None:intergenic | 45.0% | |
GAACTAGCCAAGAGGACTTA+TGG | + | chr7.2:8059270-8059289 | MS.gene050298:CDS | 45.0% | |
GCAAGCAAAACTTTGCGTAC+AGG | + | chr7.2:8057837-8057856 | MS.gene050298:intron | 45.0% | |
GCCTGATGAAAAAACATGGG+TGG | + | chr7.2:8056891-8056910 | MS.gene050298:CDS | 45.0% | |
GTCCTCAAACACCGACATTA+TGG | - | chr7.2:8059409-8059428 | None:intergenic | 45.0% | |
GTTGGAGTAGAGGACTACAT+GGG | + | chr7.2:8059465-8059484 | MS.gene050298:CDS | 45.0% | |
TACGATCTTGCCACGTGTTA+CGG | - | chr7.2:8056828-8056847 | None:intergenic | 45.0% | |
TGTCAAACCAGGGTTCTCTA+TGG | - | chr7.2:8059370-8059389 | None:intergenic | 45.0% | |
TGTGCTTCGGTTCATGGTTT+GGG | + | chr7.2:8059489-8059508 | MS.gene050298:CDS | 45.0% | |
TGTTGTTCCTTTGGCGATTG+AGG | + | chr7.2:8057032-8057051 | MS.gene050298:CDS | 45.0% | |
TTCAGGGTTGTAAGCAGAGT+AGG | + | chr7.2:8057448-8057467 | MS.gene050298:intron | 45.0% | |
TTGACACCATAAGGGATGGA+AGG | + | chr7.2:8059529-8059548 | MS.gene050298:CDS | 45.0% | |
TTGGAGTAGAGGACTACATG+GGG | + | chr7.2:8059466-8059485 | MS.gene050298:CDS | 45.0% | |
TTTCTCCTCCTTTGATCACG+TGG | - | chr7.2:8059242-8059261 | None:intergenic | 45.0% | |
! | AATGTCGGTGTTTGAGGACA+CGG | + | chr7.2:8059410-8059429 | MS.gene050298:CDS | 45.0% |
! | AGGAGTGTGGGATGTAAGAA+AGG | - | chr7.2:8056704-8056723 | None:intergenic | 45.0% |
! | ATCTAGCCTTCCATCCCTTA+TGG | - | chr7.2:8059538-8059557 | None:intergenic | 45.0% |
! | CATGGTTTGGGACCATCTAT+GGG | + | chr7.2:8059501-8059520 | MS.gene050298:CDS | 45.0% |
! | GGAGAATGTTGTTGCTGTTG+AGG | + | chr7.2:8057008-8057027 | MS.gene050298:CDS | 45.0% |
! | TCATGGTTTGGGACCATCTA+TGG | + | chr7.2:8059500-8059519 | MS.gene050298:CDS | 45.0% |
!! | TTCGCGAAAGGAAGCACTTA+TGG | + | chr7.2:8058632-8058651 | MS.gene050298:intron | 45.0% |
AAATTTGTCCGGTCCCGACT+TGG | - | chr7.2:8058936-8058955 | None:intergenic | 50.0% | |
AACACGTGGCAAGATCGTAC+CGG | + | chr7.2:8056829-8056848 | MS.gene050298:CDS | 50.0% | |
AATTTGTCCGGTCCCGACTT+GGG | - | chr7.2:8058935-8058954 | None:intergenic | 50.0% | |
AGTGCTTCCTTTCGCGAAAC+AGG | - | chr7.2:8058630-8058649 | None:intergenic | 50.0% | |
GATCACGTGGTTGTTGAGGA+TGG | - | chr7.2:8059229-8059248 | None:intergenic | 50.0% | |
GATCTTGTTCCTGGTCGCAA+AGG | + | chr7.2:8057054-8057073 | MS.gene050298:CDS | 50.0% | |
GCAACAAGAGGTTGGAGTAG+AGG | + | chr7.2:8059455-8059474 | MS.gene050298:CDS | 50.0% | |
GCGATTGAGGATCTTGTTCC+TGG | + | chr7.2:8057045-8057064 | MS.gene050298:CDS | 50.0% | |
GGCAAGATGCAACAAGAGGT+TGG | + | chr7.2:8059447-8059466 | MS.gene050298:CDS | 50.0% | |
GGTTGGAGTAGAGGACTACA+TGG | + | chr7.2:8059464-8059483 | MS.gene050298:CDS | 50.0% | |
GTGTGCTTCGGTTCATGGTT+TGG | + | chr7.2:8059488-8059507 | MS.gene050298:CDS | 50.0% | |
GTGTGGAGCAATAACTGCAG+CGG | + | chr7.2:8057479-8057498 | MS.gene050298:CDS | 50.0% | |
TACACTACCAGCTGCAGAGT+CGG | - | chr7.2:8057792-8057811 | None:intergenic | 50.0% | |
TGTGGAGCAATAACTGCAGC+GGG | + | chr7.2:8057480-8057499 | MS.gene050298:CDS | 50.0% | |
TGTTTCTTCCCTTTGCGACC+AGG | - | chr7.2:8057066-8057085 | None:intergenic | 50.0% | |
TTTGGTCCCTAGAGTGCAAC+GGG | - | chr7.2:8059581-8059600 | None:intergenic | 50.0% | |
! | AGAAAAACCGACTCTGCAGC+TGG | + | chr7.2:8057782-8057801 | MS.gene050298:intron | 50.0% |
! | GTCTTTGGGAACTAGCCAAG+AGG | + | chr7.2:8059262-8059281 | MS.gene050298:CDS | 50.0% |
! | TTGGTGGCACAGAATGTAGC+TGG | + | chr7.2:8056509-8056528 | MS.gene050298:CDS | 50.0% |
! | TTTGGAGCCTGTTTCGCGAA+AGG | + | chr7.2:8058620-8058639 | MS.gene050298:intron | 50.0% |
AAAGCCATTCGTGGTGGCAC+TGG | + | chr7.2:8056535-8056554 | MS.gene050298:CDS | 55.0% | |
AATGCCAGTGCCACCACGAA+TGG | - | chr7.2:8056542-8056561 | None:intergenic | 55.0% | |
ACCAGGGTTCTCTATGGCCT+TGG | - | chr7.2:8059364-8059383 | None:intergenic | 55.0% | |
AGCTGGTGCAAAGCCATTCG+TGG | + | chr7.2:8056526-8056545 | MS.gene050298:CDS | 55.0% | |
AGTGGACCGGCAATCAGTGA+GGG | - | chr7.2:8057559-8057578 | None:intergenic | 55.0% | |
ATCCATCCCCGTTGCACTCT+AGG | + | chr7.2:8059571-8059590 | MS.gene050298:CDS | 55.0% | |
ATGGGGTGTGCTTCGGTTCA+TGG | + | chr7.2:8059483-8059502 | MS.gene050298:CDS | 55.0% | |
GGACTACATGGGGTGTGCTT+CGG | + | chr7.2:8059476-8059495 | MS.gene050298:CDS | 55.0% | |
TCCAAGGCCATAGAGAACCC+TGG | + | chr7.2:8059360-8059379 | MS.gene050298:CDS | 55.0% | |
TCCATCCCCGTTGCACTCTA+GGG | + | chr7.2:8059572-8059591 | MS.gene050298:CDS | 55.0% | |
TGAGAGAGGTGGGTCAAGAG+TGG | - | chr7.2:8057577-8057596 | None:intergenic | 55.0% | |
TGGTGCAAAGCCATTCGTGG+TGG | + | chr7.2:8056529-8056548 | MS.gene050298:CDS | 55.0% | |
TTGGTCCCTAGAGTGCAACG+GGG | - | chr7.2:8059580-8059599 | None:intergenic | 55.0% | |
!! | GAGGACACGGTGGTTGATGA+CGG | + | chr7.2:8059423-8059442 | MS.gene050298:CDS | 55.0% |
ACATTGGCCCAAGTCGGGAC+CGG | + | chr7.2:8058925-8058944 | MS.gene050298:intron | 60.0% | |
CGGCGGCAAGATGCAACAAG+AGG | + | chr7.2:8059443-8059462 | MS.gene050298:CDS | 60.0% | |
GAGGTGGGTCAAGAGTGGAC+CGG | - | chr7.2:8057572-8057591 | None:intergenic | 60.0% | |
GAGTGGACCGGCAATCAGTG+AGG | - | chr7.2:8057560-8057579 | None:intergenic | 60.0% | |
TCCCTAGAGTGCAACGGGGA+TGG | - | chr7.2:8059576-8059595 | None:intergenic | 60.0% | |
! | GTCGGTGTTTGAGGACACGG+TGG | + | chr7.2:8059413-8059432 | MS.gene050298:CDS | 60.0% |
!! | GACACGGTGGTTGATGACGG+CGG | + | chr7.2:8059426-8059445 | MS.gene050298:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 8056478 | 8059668 | 8056478 | ID=MS.gene050298 |
chr7.2 | mRNA | 8056478 | 8059668 | 8056478 | ID=MS.gene050298.t1;Parent=MS.gene050298 |
chr7.2 | exon | 8056478 | 8057233 | 8056478 | ID=MS.gene050298.t1.exon1;Parent=MS.gene050298.t1 |
chr7.2 | CDS | 8056478 | 8057233 | 8056478 | ID=cds.MS.gene050298.t1;Parent=MS.gene050298.t1 |
chr7.2 | exon | 8057453 | 8057609 | 8057453 | ID=MS.gene050298.t1.exon2;Parent=MS.gene050298.t1 |
chr7.2 | CDS | 8057453 | 8057609 | 8057453 | ID=cds.MS.gene050298.t1;Parent=MS.gene050298.t1 |
chr7.2 | exon | 8059211 | 8059668 | 8059211 | ID=MS.gene050298.t1.exon3;Parent=MS.gene050298.t1 |
chr7.2 | CDS | 8059211 | 8059668 | 8059211 | ID=cds.MS.gene050298.t1;Parent=MS.gene050298.t1 |
Gene Sequence |
Protein sequence |