AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050298


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050298.t1 MTR_1g059760 52.434 452 198 8 9 449 18 463 7.81e-163 468
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050298.t1 AT3G52610 46.467 467 221 12 9 452 13 473 3.04e-139 408

Find 102 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTCTCAAATCACAATTT+TGG 0.217496 7.2:+8057588 MS.gene050298:CDS
TCATGGTTTGGGACCATCTA+TGG 0.223620 7.2:+8059500 MS.gene050298:CDS
ATGGGGTGTGCTTCGGTTCA+TGG 0.237066 7.2:+8059483 MS.gene050298:CDS
TGTGCTTCGGTTCATGGTTT+GGG 0.291835 7.2:+8059489 MS.gene050298:CDS
AATAACTGCAGCGGGATTAA+TGG 0.304334 7.2:+8057488 MS.gene050298:CDS
GTGTGCTTCGGTTCATGGTT+TGG 0.307756 7.2:+8059488 MS.gene050298:CDS
GTCCTCAAACACCGACATTA+TGG 0.308407 7.2:-8059406 None:intergenic
GCGATTGAGGATCTTGTTCC+TGG 0.311297 7.2:+8057045 MS.gene050298:CDS
TCAAAGGAGGAGAAAGTCTT+TGG 0.349274 7.2:+8059247 MS.gene050298:CDS
CGACATTATGGATGTTCTTA+AGG 0.349557 7.2:-8059394 None:intergenic
TGTTAATAAGCTCTTGCATT+TGG 0.357546 7.2:-8059596 None:intergenic
GCAAAGGGAAGAAACATATC+TGG 0.359281 7.2:+8057070 MS.gene050298:CDS
TGAAAACGAGAAATATCAAT+AGG 0.367993 7.2:-8056589 None:intergenic
GAACTAGCCAAGAGGACTTA+TGG 0.372116 7.2:+8059270 MS.gene050298:CDS
ATCTAGCCTTCCATCCCTTA+TGG 0.374376 7.2:-8059535 None:intergenic
ATCCATAATGTCGGTGTTTG+AGG 0.408361 7.2:+8059404 MS.gene050298:CDS
ACCAGGGTTCTCTATGGCCT+TGG 0.408629 7.2:-8059361 None:intergenic
AGTAAACCTAAAAGAATTAA+CGG 0.410580 7.2:-8057121 None:intergenic
ATCCATCCCCGTTGCACTCT+AGG 0.410966 7.2:+8059571 MS.gene050298:CDS
TTTGGTCCCTAGAGTGCAAC+GGG 0.411997 7.2:-8059578 None:intergenic
TACGATCTTGCCACGTGTTA+CGG 0.414492 7.2:-8056825 None:intergenic
TTATTACCCTCACTGATTGC+CGG 0.431014 7.2:+8057550 MS.gene050298:CDS
TGTCAAACCAGGGTTCTCTA+TGG 0.431401 7.2:-8059367 None:intergenic
CACTCCGTTGCAACAAATCA+TGG 0.432383 7.2:+8056789 MS.gene050298:CDS
TGTTGAGGATGTTGTTCCTT+TGG 0.434930 7.2:+8057023 MS.gene050298:CDS
CTTAAGGATGATGTCAAACC+AGG 0.439362 7.2:-8059378 None:intergenic
ATGAAGGCTATTCTTATTGA+AGG 0.442750 7.2:+8059621 MS.gene050298:CDS
CTTGTCATTGTTCTTAGAGT+TGG 0.444238 7.2:-8059301 None:intergenic
AAAGCCATTCGTGGTGGCAC+TGG 0.454895 7.2:+8056535 MS.gene050298:CDS
TGTTGTTCCTTTGGCGATTG+AGG 0.458789 7.2:+8057032 MS.gene050298:CDS
AGGAGTGTGGGATGTAAGAA+AGG 0.459967 7.2:-8056701 None:intergenic
CATGGTTTGGGACCATCTAT+GGG 0.463005 7.2:+8059501 MS.gene050298:CDS
GGACTACATGGGGTGTGCTT+CGG 0.472358 7.2:+8059476 MS.gene050298:CDS
AAGAATAGTTCTAAGAAGTA+CGG 0.474242 7.2:+8057525 MS.gene050298:CDS
CAAAGGAGGAGAAAGTCTTT+GGG 0.485474 7.2:+8059248 MS.gene050298:CDS
TCCATCCCCGTTGCACTCTA+GGG 0.489654 7.2:+8059572 MS.gene050298:CDS
AAATGCTCCATAAGTCCTCT+TGG 0.502139 7.2:-8059277 None:intergenic
TGTTTCTTCCCTTTGCGACC+AGG 0.508762 7.2:-8057063 None:intergenic
ATGTCGACGGTTGAAACAAA+AGG 0.509382 7.2:+8056478 MS.gene050298:CDS
TCCCTAGAGTGCAACGGGGA+TGG 0.509671 7.2:-8059573 None:intergenic
TTCAGGGTTGTAAGCAGAGT+AGG 0.515071 7.2:+8057448 MS.gene050298:intron
ATCTTGTTCCTGGTCGCAAA+GGG 0.516393 7.2:+8057055 MS.gene050298:CDS
GCAACAAGAGGTTGGAGTAG+AGG 0.526477 7.2:+8059455 MS.gene050298:CDS
CTTTGATCACGTGGTTGTTG+AGG 0.527886 7.2:-8059230 None:intergenic
GGAGAATGTTGTTGCTGTTG+AGG 0.528626 7.2:+8057008 MS.gene050298:CDS
AGAATAGTTCTAAGAAGTAC+GGG 0.531546 7.2:+8057526 MS.gene050298:CDS
AATGCCAGTGCCACCACGAA+TGG 0.537676 7.2:-8056539 None:intergenic
TTGACACCATAAGGGATGGA+AGG 0.538475 7.2:+8059529 MS.gene050298:CDS
AGAGCTTATTAACAAGATGA+AGG 0.539515 7.2:+8059605 MS.gene050298:CDS
GCTTACATCTAAAACCCTCT+TGG 0.543120 7.2:-8057217 None:intergenic
GATCTTGTTCCTGGTCGCAA+AGG 0.543662 7.2:+8057054 MS.gene050298:CDS
TGTGGAGCAATAACTGCAGC+GGG 0.545669 7.2:+8057480 MS.gene050298:CDS
AAGGCTATTCTTATTGAAGG+TGG 0.558507 7.2:+8059624 MS.gene050298:CDS
GAAACAAAAGGTCGTAATGT+TGG 0.558743 7.2:+8056490 MS.gene050298:CDS
CTCAACAACCACGTGATCAA+AGG 0.561727 7.2:+8059231 MS.gene050298:CDS
CATGAACTTTCTTATGTCCA+AGG 0.562719 7.2:+8059344 MS.gene050298:CDS
AAAGGAGAAAATAGTGTCTG+TGG 0.563282 7.2:-8056683 None:intergenic
AATTGTGATTTGAGAGAGGT+GGG 0.571654 7.2:-8057584 None:intergenic
TGTTCCATGATTTGTTGCAA+CGG 0.573358 7.2:-8056793 None:intergenic
TTTCTCCTCCTTTGATCACG+TGG 0.576132 7.2:-8059239 None:intergenic
GGTTGGAGTAGAGGACTACA+TGG 0.579061 7.2:+8059464 MS.gene050298:CDS
GGCAAGATGCAACAAGAGGT+TGG 0.579461 7.2:+8059447 MS.gene050298:CDS
GAGGACACGGTGGTTGATGA+CGG 0.580211 7.2:+8059423 MS.gene050298:CDS
AAATTGTGATTTGAGAGAGG+TGG 0.580439 7.2:-8057585 None:intergenic
TAGCTTAAGTATTATGTCGA+CGG 0.581330 7.2:+8056465 None:intergenic
CAAAGGGAAGAAACATATCT+GGG 0.581978 7.2:+8057071 MS.gene050298:CDS
CCAAAATTGTGATTTGAGAG+AGG 0.582441 7.2:-8057588 None:intergenic
TGAGAGAGGTGGGTCAAGAG+TGG 0.586797 7.2:-8057574 None:intergenic
AGCTGGTGCAAAGCCATTCG+TGG 0.588805 7.2:+8056526 MS.gene050298:CDS
GATCACGTGGTTGTTGAGGA+TGG 0.593465 7.2:-8059226 None:intergenic
ACAAAAGGTCGTAATGTTGG+TGG 0.598123 7.2:+8056493 MS.gene050298:CDS
TGGATGATGATGATGTGTTG+TGG 0.599316 7.2:-8056663 None:intergenic
TTGGTGGCACAGAATGTAGC+TGG 0.609381 7.2:+8056509 MS.gene050298:CDS
CTTAAGAACATCCATAATGT+CGG 0.610419 7.2:+8059395 MS.gene050298:CDS
AAACACGTCAGTATCAATAC+CGG 0.610554 7.2:-8056848 None:intergenic
AAATGCTAGGTCTTCACAAG+TGG 0.613957 7.2:+8057167 MS.gene050298:CDS
AATGTCGGTGTTTGAGGACA+CGG 0.619648 7.2:+8059410 MS.gene050298:CDS
ATTTGGTCCCTAGAGTGCAA+CGG 0.621651 7.2:-8059579 None:intergenic
ACAAGATCCTCAATCGCCAA+AGG 0.623888 7.2:-8057039 None:intergenic
AGTGGACCGGCAATCAGTGA+GGG 0.635780 7.2:-8057556 None:intergenic
GTGTGGAGCAATAACTGCAG+CGG 0.636382 7.2:+8057479 MS.gene050298:CDS
AACAACCACGTGATCAAAGG+AGG 0.638984 7.2:+8059234 MS.gene050298:CDS
AACACGTGGCAAGATCGTAC+CGG 0.650719 7.2:+8056829 MS.gene050298:CDS
AAGAAACATATCTGGGAGCG+TGG 0.650935 7.2:+8057078 MS.gene050298:CDS
CAATCAAACTGATACCAAGA+GGG 0.655063 7.2:+8057203 MS.gene050298:CDS
TCCAAGGCCATAGAGAACCC+TGG 0.655783 7.2:+8059360 MS.gene050298:CDS
CGGCGGCAAGATGCAACAAG+AGG 0.657442 7.2:+8059443 MS.gene050298:CDS
GTTGGAGTAGAGGACTACAT+GGG 0.661686 7.2:+8059465 MS.gene050298:CDS
TCAATCAAACTGATACCAAG+AGG 0.661853 7.2:+8057202 MS.gene050298:CDS
GCTTGTGTTGATGAAAGATG+AGG 0.663457 7.2:+8056978 MS.gene050298:CDS
GAGTGGACCGGCAATCAGTG+AGG 0.664520 7.2:-8057557 None:intergenic
CAGAGTAGGATTAAGCTGTG+TGG 0.667291 7.2:+8057462 MS.gene050298:CDS
GAGGTGGGTCAAGAGTGGAC+CGG 0.670737 7.2:-8057569 None:intergenic
TTAAGGATGATGTCAAACCA+GGG 0.675705 7.2:-8059377 None:intergenic
ATGAACTGAACCGTAACACG+TGG 0.676263 7.2:+8056815 MS.gene050298:CDS
TGGTGCAAAGCCATTCGTGG+TGG 0.684258 7.2:+8056529 MS.gene050298:CDS
GTCTTTGGGAACTAGCCAAG+AGG 0.697035 7.2:+8059262 MS.gene050298:CDS
TTGGAGTAGAGGACTACATG+GGG 0.733565 7.2:+8059466 MS.gene050298:CDS
GACACGGTGGTTGATGACGG+CGG 0.738900 7.2:+8059426 MS.gene050298:CDS
AGCATGCGATAGAACAACTG+CGG 0.738953 7.2:+8056936 MS.gene050298:CDS
GTCGGTGTTTGAGGACACGG+TGG 0.755614 7.2:+8059413 MS.gene050298:CDS
TTGGTCCCTAGAGTGCAACG+GGG 0.825259 7.2:-8059577 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTAATTTATGATTTTCTT+GGG + chr7.2:8058833-8058852 MS.gene050298:intron 10.0%
!!! TTATTAATTTATGATTTTCT+TGG + chr7.2:8058832-8058851 MS.gene050298:intron 10.0%
!! AAACTCTTTAAATTAATACT+CGG - chr7.2:8058985-8059004 None:intergenic 15.0%
!! ACTAACAAAAAAAAAAAAGA+GGG + chr7.2:8058150-8058169 MS.gene050298:intron 15.0%
!! CATACAAATATCAAATTAAT+TGG - chr7.2:8057409-8057428 None:intergenic 15.0%
!!! ACTTTTGAATGATTTTTTTA+AGG + chr7.2:8057879-8057898 MS.gene050298:intron 15.0%
!!! AGTTTTTCAATTTTTTACAT+TGG + chr7.2:8058909-8058928 MS.gene050298:intron 15.0%
!!! TATACTTTAATGAATTTTGA+AGG - chr7.2:8057937-8057956 None:intergenic 15.0%
!!! TCTAAAATAATAAATTTGTC+CGG - chr7.2:8058947-8058966 None:intergenic 15.0%
!!! TTAAAAGTTTTTCTTTTTGA+AGG + chr7.2:8059029-8059048 MS.gene050298:intron 15.0%
!! AAATGTTAACAAATGTCTAT+AGG - chr7.2:8058348-8058367 None:intergenic 20.0%
!! AACCAAACATAAAATAGATT+AGG - chr7.2:8057243-8057262 None:intergenic 20.0%
!! ACCAAACATAAAATAGATTA+GGG - chr7.2:8057242-8057261 None:intergenic 20.0%
!! ACTATACATACTAAACAAAA+AGG + chr7.2:8058577-8058596 MS.gene050298:intron 20.0%
!! AGTAAACCTAAAAGAATTAA+CGG - chr7.2:8057124-8057143 None:intergenic 20.0%
!! CACTAACAAAAAAAAAAAAG+AGG + chr7.2:8058149-8058168 MS.gene050298:intron 20.0%
!! CTCTATAAATTAATAATGTC+AGG + chr7.2:8058470-8058489 MS.gene050298:intron 20.0%
!! GAAATGAAATTTGTATTTCA+GGG + chr7.2:8057432-8057451 MS.gene050298:intron 20.0%
!! GATGATTTAGAAATATTGAT+AGG + chr7.2:8059167-8059186 MS.gene050298:intron 20.0%
!! TAAATTAATAATGTCAGGAT+CGG + chr7.2:8058475-8058494 MS.gene050298:intron 20.0%
!! TAGAACCATTAATATGTATA+TGG + chr7.2:8057700-8057719 MS.gene050298:intron 20.0%
!! TGAAATGAAATTTGTATTTC+AGG + chr7.2:8057431-8057450 MS.gene050298:intron 20.0%
!! TTAATGATACAAAAAATGCT+AGG + chr7.2:8057154-8057173 MS.gene050298:CDS 20.0%
!!! AAAAAGGCATATTTATGATA+CGG + chr7.2:8058593-8058612 MS.gene050298:intron 20.0%
!!! CTCATATATATGTTTGATTT+TGG - chr7.2:8057365-8057384 None:intergenic 20.0%
!!! CTCTTTTTTTTTTTTGTTAG+TGG - chr7.2:8058151-8058170 None:intergenic 20.0%
!!! TAATCTATTTTATGTTTGGT+TGG + chr7.2:8057242-8057261 MS.gene050298:intron 20.0%
! AAACGACTCTTTCAATTTAA+TGG - chr7.2:8058210-8058229 None:intergenic 25.0%
! AATAAGGAATGAATGTTGAT+TGG - chr7.2:8057755-8057774 None:intergenic 25.0%
! ATTTATAGAGTTTCTACTGT+AGG - chr7.2:8058460-8058479 None:intergenic 25.0%
! CACTTCCATATACATATTAA+TGG - chr7.2:8057708-8057727 None:intergenic 25.0%
! CATTAATATGTATATGGAAG+TGG + chr7.2:8057706-8057725 MS.gene050298:intron 25.0%
! TGAAAACGAGAAATATCAAT+AGG - chr7.2:8056592-8056611 None:intergenic 25.0%
!! AGAGATCCCTTTATAATTTT+CGG - chr7.2:8058860-8058879 None:intergenic 25.0%
!! GAGAACAGAAAATTGATTTA+TGG + chr7.2:8057653-8057672 MS.gene050298:intron 25.0%
!!! AAGAATAGTTCTAAGAAGTA+CGG + chr7.2:8057525-8057544 MS.gene050298:CDS 25.0%
!!! AAGTTTTTCTTTTTGAAGGA+AGG + chr7.2:8059033-8059052 MS.gene050298:intron 25.0%
!!! TTTGTTTTTTGCAAGAATGT+TGG - chr7.2:8056764-8056783 None:intergenic 25.0%
AGAGCTTATTAACAAGATGA+AGG + chr7.2:8059605-8059624 MS.gene050298:CDS 30.0%
ATGAAGGCTATTCTTATTGA+AGG + chr7.2:8059621-8059640 MS.gene050298:CDS 30.0%
CTTAAGAACATCCATAATGT+CGG + chr7.2:8059395-8059414 MS.gene050298:CDS 30.0%
GTGCATATGTTTCAATGTAT+AGG + chr7.2:8059189-8059208 MS.gene050298:intron 30.0%
TATGCCTGATGAAAAAACAT+GGG + chr7.2:8056888-8056907 MS.gene050298:CDS 30.0%
TATTTATGATACGGTGTCTT+TGG + chr7.2:8058602-8058621 MS.gene050298:intron 30.0%
TGTTAATAAGCTCTTGCATT+TGG - chr7.2:8059599-8059618 None:intergenic 30.0%
TTGGGACCGAAAATTATAAA+GGG + chr7.2:8058851-8058870 MS.gene050298:intron 30.0%
! ATGCAGTTTTTGCAAAATCA+TGG - chr7.2:8057305-8057324 None:intergenic 30.0%
! CATTTAAGATGAGATAGAGA+GGG - chr7.2:8057985-8058004 None:intergenic 30.0%
! GCCCTAATCTATTTTATGTT+TGG + chr7.2:8057238-8057257 MS.gene050298:intron 30.0%
! GGTTTTTCTTTTCACGAATA+AGG - chr7.2:8057771-8057790 None:intergenic 30.0%
! GTTACTCCGTTAATTCTTTT+AGG + chr7.2:8057115-8057134 MS.gene050298:CDS 30.0%
! TCATTTAAGATGAGATAGAG+AGG - chr7.2:8057986-8058005 None:intergenic 30.0%
!! AGAATAGTTCTAAGAAGTAC+GGG + chr7.2:8057526-8057545 MS.gene050298:CDS 30.0%
!! ATTTTGTAGTTTGTGAAGTG+AGG - chr7.2:8056617-8056636 None:intergenic 30.0%
!! CTTTAAAGTTCAAGTCTGTT+TGG - chr7.2:8058746-8058765 None:intergenic 30.0%
!!! TTTTTTGTTAGTGGATGAAG+TGG - chr7.2:8058142-8058161 None:intergenic 30.0%
AAACACGTCAGTATCAATAC+CGG - chr7.2:8056851-8056870 None:intergenic 35.0%
AAAGGAGAAAATAGTGTCTG+TGG - chr7.2:8056686-8056705 None:intergenic 35.0%
AAATACAACACCTGAGCTAT+TGG + chr7.2:8058692-8058711 MS.gene050298:intron 35.0%
AAATTGTGATTTGAGAGAGG+TGG - chr7.2:8057588-8057607 None:intergenic 35.0%
AAGGCTATTCTTATTGAAGG+TGG + chr7.2:8059624-8059643 MS.gene050298:CDS 35.0%
AATTGTGATTTGAGAGAGGT+GGG - chr7.2:8057587-8057606 None:intergenic 35.0%
ATCAATTTCCTTGATACACG+AGG + chr7.2:8058404-8058423 MS.gene050298:intron 35.0%
ATCGTACAAGATTAAGTACC+GGG + chr7.2:8057274-8057293 MS.gene050298:intron 35.0%
CAAAGGGAAGAAACATATCT+GGG + chr7.2:8057071-8057090 MS.gene050298:CDS 35.0%
CAATCAAACTGATACCAAGA+GGG + chr7.2:8057203-8057222 MS.gene050298:CDS 35.0%
CATCGTACAAGATTAAGTAC+CGG + chr7.2:8057273-8057292 MS.gene050298:intron 35.0%
CATGAACTTTCTTATGTCCA+AGG + chr7.2:8059344-8059363 MS.gene050298:CDS 35.0%
CCAAAATTGTGATTTGAGAG+AGG - chr7.2:8057591-8057610 None:intergenic 35.0%
CGACATTATGGATGTTCTTA+AGG - chr7.2:8059397-8059416 None:intergenic 35.0%
CTATGCCTGATGAAAAAACA+TGG + chr7.2:8056887-8056906 MS.gene050298:CDS 35.0%
CTTGGGACCGAAAATTATAA+AGG + chr7.2:8058850-8058869 MS.gene050298:intron 35.0%
CTTGTCATTGTTCTTAGAGT+TGG - chr7.2:8059304-8059323 None:intergenic 35.0%
GAAACAAAAGGTCGTAATGT+TGG + chr7.2:8056490-8056509 MS.gene050298:CDS 35.0%
GATGAAAGATGAGGAAAAAG+AGG + chr7.2:8056987-8057006 MS.gene050298:CDS 35.0%
GTGTCAAAAATACCCATAGA+TGG - chr7.2:8059516-8059535 None:intergenic 35.0%
TAAATTCGCACGCAATTGTA+AGG - chr7.2:8058109-8058128 None:intergenic 35.0%
TATGTATATGGAAGTGGAAG+TGG + chr7.2:8057712-8057731 MS.gene050298:intron 35.0%
TCAATCAAACTGATACCAAG+AGG + chr7.2:8057202-8057221 MS.gene050298:CDS 35.0%
TTAAGGATGATGTCAAACCA+GGG - chr7.2:8059380-8059399 None:intergenic 35.0%
! AGGAATGAATGTTGATTGGT+CGG - chr7.2:8057751-8057770 None:intergenic 35.0%
! ATTTTTGACACCATAAGGGA+TGG + chr7.2:8059525-8059544 MS.gene050298:CDS 35.0%
! CCTCTCTCAAATCACAATTT+TGG + chr7.2:8057588-8057607 MS.gene050298:CDS 35.0%
! TTTTGATCTGAGGATAGGAT+GGG - chr7.2:8056641-8056660 None:intergenic 35.0%
!! GATTTTGATGAAAGGAGTGT+GGG - chr7.2:8056716-8056735 None:intergenic 35.0%
!! GGGTATTTTTGACACCATAA+GGG + chr7.2:8059521-8059540 MS.gene050298:CDS 35.0%
!! TGAGACTCGATTTTGATGAA+AGG - chr7.2:8056724-8056743 None:intergenic 35.0%
!! TGGGTATTTTTGACACCATA+AGG + chr7.2:8059520-8059539 MS.gene050298:CDS 35.0%
!! TGTTCCATGATTTGTTGCAA+CGG - chr7.2:8056796-8056815 None:intergenic 35.0%
!!! TTTTTTACATTGGCCCAAGT+CGG + chr7.2:8058919-8058938 MS.gene050298:intron 35.0%
AAATGCTAGGTCTTCACAAG+TGG + chr7.2:8057167-8057186 MS.gene050298:CDS 40.0%
AAATGCTCCATAAGTCCTCT+TGG - chr7.2:8059280-8059299 None:intergenic 40.0%
AATAACTGCAGCGGGATTAA+TGG + chr7.2:8057488-8057507 MS.gene050298:CDS 40.0%
ACAAAAGGTCGTAATGTTGG+TGG + chr7.2:8056493-8056512 MS.gene050298:CDS 40.0%
ATGTCGACGGTTGAAACAAA+AGG + chr7.2:8056478-8056497 MS.gene050298:CDS 40.0%
CAAAGGAGGAGAAAGTCTTT+GGG + chr7.2:8059248-8059267 MS.gene050298:CDS 40.0%
CAAAGTAACCTCGTGTATCA+AGG - chr7.2:8058415-8058434 None:intergenic 40.0%
CTTAAGGATGATGTCAAACC+AGG - chr7.2:8059381-8059400 None:intergenic 40.0%
CTTATTGCATCCAATAGCTC+AGG - chr7.2:8058705-8058724 None:intergenic 40.0%
CTTGATACACGAGGTTACTT+TGG + chr7.2:8058413-8058432 MS.gene050298:intron 40.0%
GCAAAGGGAAGAAACATATC+TGG + chr7.2:8057070-8057089 MS.gene050298:CDS 40.0%
TCAAAGGAGGAGAAAGTCTT+TGG + chr7.2:8059247-8059266 MS.gene050298:CDS 40.0%
TGAAGGTGGAAAAACATACG+AGG + chr7.2:8059638-8059657 MS.gene050298:CDS 40.0%
TGATGAAAAAACATGGGTGG+TGG + chr7.2:8056894-8056913 MS.gene050298:CDS 40.0%
TGCAAAATCATGGTGATTCC+CGG - chr7.2:8057295-8057314 None:intergenic 40.0%
TGTTGAGGATGTTGTTCCTT+TGG + chr7.2:8057023-8057042 MS.gene050298:CDS 40.0%
! ATCCATAATGTCGGTGTTTG+AGG + chr7.2:8059404-8059423 MS.gene050298:CDS 40.0%
! GCTTACATCTAAAACCCTCT+TGG - chr7.2:8057220-8057239 None:intergenic 40.0%
! GCTTGTGTTGATGAAAGATG+AGG + chr7.2:8056978-8056997 MS.gene050298:CDS 40.0%
! TGACAAGCACTTTTCAGACA+TGG + chr7.2:8059317-8059336 MS.gene050298:CDS 40.0%
! TGGATGATGATGATGTGTTG+TGG - chr7.2:8056666-8056685 None:intergenic 40.0%
! TTATTACCCTCACTGATTGC+CGG + chr7.2:8057550-8057569 MS.gene050298:CDS 40.0%
! TTTTTACATTGGCCCAAGTC+GGG + chr7.2:8058920-8058939 MS.gene050298:intron 40.0%
!! CGATTTTGATGAAAGGAGTG+TGG - chr7.2:8056717-8056736 None:intergenic 40.0%
!! GTTTTGATCTGAGGATAGGA+TGG - chr7.2:8056642-8056661 None:intergenic 40.0%
!! TGGAGTTTTGATCTGAGGAT+AGG - chr7.2:8056646-8056665 None:intergenic 40.0%
!! TGTTGTGGAGTTTTGATCTG+AGG - chr7.2:8056651-8056670 None:intergenic 40.0%
!!! ACCACCCATGTTTTTTCATC+AGG - chr7.2:8056895-8056914 None:intergenic 40.0%
AACAACCACGTGATCAAAGG+AGG + chr7.2:8059234-8059253 MS.gene050298:CDS 45.0%
AAGAAACATATCTGGGAGCG+TGG + chr7.2:8057078-8057097 MS.gene050298:CDS 45.0%
ACAAGATCCTCAATCGCCAA+AGG - chr7.2:8057042-8057061 None:intergenic 45.0%
AGCATGCGATAGAACAACTG+CGG + chr7.2:8056936-8056955 MS.gene050298:CDS 45.0%
ATCTTGTTCCTGGTCGCAAA+GGG + chr7.2:8057055-8057074 MS.gene050298:CDS 45.0%
ATGAACTGAACCGTAACACG+TGG + chr7.2:8056815-8056834 MS.gene050298:CDS 45.0%
ATTTGGTCCCTAGAGTGCAA+CGG - chr7.2:8059582-8059601 None:intergenic 45.0%
CACTCCGTTGCAACAAATCA+TGG + chr7.2:8056789-8056808 MS.gene050298:CDS 45.0%
CAGAGTAGGATTAAGCTGTG+TGG + chr7.2:8057462-8057481 MS.gene050298:CDS 45.0%
CTCAACAACCACGTGATCAA+AGG + chr7.2:8059231-8059250 MS.gene050298:CDS 45.0%
CTTTGATCACGTGGTTGTTG+AGG - chr7.2:8059233-8059252 None:intergenic 45.0%
GAACTAGCCAAGAGGACTTA+TGG + chr7.2:8059270-8059289 MS.gene050298:CDS 45.0%
GCAAGCAAAACTTTGCGTAC+AGG + chr7.2:8057837-8057856 MS.gene050298:intron 45.0%
GCCTGATGAAAAAACATGGG+TGG + chr7.2:8056891-8056910 MS.gene050298:CDS 45.0%
GTCCTCAAACACCGACATTA+TGG - chr7.2:8059409-8059428 None:intergenic 45.0%
GTTGGAGTAGAGGACTACAT+GGG + chr7.2:8059465-8059484 MS.gene050298:CDS 45.0%
TACGATCTTGCCACGTGTTA+CGG - chr7.2:8056828-8056847 None:intergenic 45.0%
TGTCAAACCAGGGTTCTCTA+TGG - chr7.2:8059370-8059389 None:intergenic 45.0%
TGTGCTTCGGTTCATGGTTT+GGG + chr7.2:8059489-8059508 MS.gene050298:CDS 45.0%
TGTTGTTCCTTTGGCGATTG+AGG + chr7.2:8057032-8057051 MS.gene050298:CDS 45.0%
TTCAGGGTTGTAAGCAGAGT+AGG + chr7.2:8057448-8057467 MS.gene050298:intron 45.0%
TTGACACCATAAGGGATGGA+AGG + chr7.2:8059529-8059548 MS.gene050298:CDS 45.0%
TTGGAGTAGAGGACTACATG+GGG + chr7.2:8059466-8059485 MS.gene050298:CDS 45.0%
TTTCTCCTCCTTTGATCACG+TGG - chr7.2:8059242-8059261 None:intergenic 45.0%
! AATGTCGGTGTTTGAGGACA+CGG + chr7.2:8059410-8059429 MS.gene050298:CDS 45.0%
! AGGAGTGTGGGATGTAAGAA+AGG - chr7.2:8056704-8056723 None:intergenic 45.0%
! ATCTAGCCTTCCATCCCTTA+TGG - chr7.2:8059538-8059557 None:intergenic 45.0%
! CATGGTTTGGGACCATCTAT+GGG + chr7.2:8059501-8059520 MS.gene050298:CDS 45.0%
! GGAGAATGTTGTTGCTGTTG+AGG + chr7.2:8057008-8057027 MS.gene050298:CDS 45.0%
! TCATGGTTTGGGACCATCTA+TGG + chr7.2:8059500-8059519 MS.gene050298:CDS 45.0%
!! TTCGCGAAAGGAAGCACTTA+TGG + chr7.2:8058632-8058651 MS.gene050298:intron 45.0%
AAATTTGTCCGGTCCCGACT+TGG - chr7.2:8058936-8058955 None:intergenic 50.0%
AACACGTGGCAAGATCGTAC+CGG + chr7.2:8056829-8056848 MS.gene050298:CDS 50.0%
AATTTGTCCGGTCCCGACTT+GGG - chr7.2:8058935-8058954 None:intergenic 50.0%
AGTGCTTCCTTTCGCGAAAC+AGG - chr7.2:8058630-8058649 None:intergenic 50.0%
GATCACGTGGTTGTTGAGGA+TGG - chr7.2:8059229-8059248 None:intergenic 50.0%
GATCTTGTTCCTGGTCGCAA+AGG + chr7.2:8057054-8057073 MS.gene050298:CDS 50.0%
GCAACAAGAGGTTGGAGTAG+AGG + chr7.2:8059455-8059474 MS.gene050298:CDS 50.0%
GCGATTGAGGATCTTGTTCC+TGG + chr7.2:8057045-8057064 MS.gene050298:CDS 50.0%
GGCAAGATGCAACAAGAGGT+TGG + chr7.2:8059447-8059466 MS.gene050298:CDS 50.0%
GGTTGGAGTAGAGGACTACA+TGG + chr7.2:8059464-8059483 MS.gene050298:CDS 50.0%
GTGTGCTTCGGTTCATGGTT+TGG + chr7.2:8059488-8059507 MS.gene050298:CDS 50.0%
GTGTGGAGCAATAACTGCAG+CGG + chr7.2:8057479-8057498 MS.gene050298:CDS 50.0%
TACACTACCAGCTGCAGAGT+CGG - chr7.2:8057792-8057811 None:intergenic 50.0%
TGTGGAGCAATAACTGCAGC+GGG + chr7.2:8057480-8057499 MS.gene050298:CDS 50.0%
TGTTTCTTCCCTTTGCGACC+AGG - chr7.2:8057066-8057085 None:intergenic 50.0%
TTTGGTCCCTAGAGTGCAAC+GGG - chr7.2:8059581-8059600 None:intergenic 50.0%
! AGAAAAACCGACTCTGCAGC+TGG + chr7.2:8057782-8057801 MS.gene050298:intron 50.0%
! GTCTTTGGGAACTAGCCAAG+AGG + chr7.2:8059262-8059281 MS.gene050298:CDS 50.0%
! TTGGTGGCACAGAATGTAGC+TGG + chr7.2:8056509-8056528 MS.gene050298:CDS 50.0%
! TTTGGAGCCTGTTTCGCGAA+AGG + chr7.2:8058620-8058639 MS.gene050298:intron 50.0%
AAAGCCATTCGTGGTGGCAC+TGG + chr7.2:8056535-8056554 MS.gene050298:CDS 55.0%
AATGCCAGTGCCACCACGAA+TGG - chr7.2:8056542-8056561 None:intergenic 55.0%
ACCAGGGTTCTCTATGGCCT+TGG - chr7.2:8059364-8059383 None:intergenic 55.0%
AGCTGGTGCAAAGCCATTCG+TGG + chr7.2:8056526-8056545 MS.gene050298:CDS 55.0%
AGTGGACCGGCAATCAGTGA+GGG - chr7.2:8057559-8057578 None:intergenic 55.0%
ATCCATCCCCGTTGCACTCT+AGG + chr7.2:8059571-8059590 MS.gene050298:CDS 55.0%
ATGGGGTGTGCTTCGGTTCA+TGG + chr7.2:8059483-8059502 MS.gene050298:CDS 55.0%
GGACTACATGGGGTGTGCTT+CGG + chr7.2:8059476-8059495 MS.gene050298:CDS 55.0%
TCCAAGGCCATAGAGAACCC+TGG + chr7.2:8059360-8059379 MS.gene050298:CDS 55.0%
TCCATCCCCGTTGCACTCTA+GGG + chr7.2:8059572-8059591 MS.gene050298:CDS 55.0%
TGAGAGAGGTGGGTCAAGAG+TGG - chr7.2:8057577-8057596 None:intergenic 55.0%
TGGTGCAAAGCCATTCGTGG+TGG + chr7.2:8056529-8056548 MS.gene050298:CDS 55.0%
TTGGTCCCTAGAGTGCAACG+GGG - chr7.2:8059580-8059599 None:intergenic 55.0%
!! GAGGACACGGTGGTTGATGA+CGG + chr7.2:8059423-8059442 MS.gene050298:CDS 55.0%
ACATTGGCCCAAGTCGGGAC+CGG + chr7.2:8058925-8058944 MS.gene050298:intron 60.0%
CGGCGGCAAGATGCAACAAG+AGG + chr7.2:8059443-8059462 MS.gene050298:CDS 60.0%
GAGGTGGGTCAAGAGTGGAC+CGG - chr7.2:8057572-8057591 None:intergenic 60.0%
GAGTGGACCGGCAATCAGTG+AGG - chr7.2:8057560-8057579 None:intergenic 60.0%
TCCCTAGAGTGCAACGGGGA+TGG - chr7.2:8059576-8059595 None:intergenic 60.0%
! GTCGGTGTTTGAGGACACGG+TGG + chr7.2:8059413-8059432 MS.gene050298:CDS 60.0%
!! GACACGGTGGTTGATGACGG+CGG + chr7.2:8059426-8059445 MS.gene050298:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 8056478 8059668 8056478 ID=MS.gene050298
chr7.2 mRNA 8056478 8059668 8056478 ID=MS.gene050298.t1;Parent=MS.gene050298
chr7.2 exon 8056478 8057233 8056478 ID=MS.gene050298.t1.exon1;Parent=MS.gene050298.t1
chr7.2 CDS 8056478 8057233 8056478 ID=cds.MS.gene050298.t1;Parent=MS.gene050298.t1
chr7.2 exon 8057453 8057609 8057453 ID=MS.gene050298.t1.exon2;Parent=MS.gene050298.t1
chr7.2 CDS 8057453 8057609 8057453 ID=cds.MS.gene050298.t1;Parent=MS.gene050298.t1
chr7.2 exon 8059211 8059668 8059211 ID=MS.gene050298.t1.exon3;Parent=MS.gene050298.t1
chr7.2 CDS 8059211 8059668 8059211 ID=cds.MS.gene050298.t1;Parent=MS.gene050298.t1
Gene Sequence

>MS.gene050298

ATGTCGACGGTTGAAACAAAAGGTCGTAATGTTGGTGGCACAGAATGTAGCTGGTGCAAAGCCATTCGTGGTGGCACTGGCATTGCAGTTTTATCACTACTCATCACAAAACCTATTGATATTTCTCGTTTTCAAACCTCACTTCACAAACTACAAAATTCCCATCCTATCCTCAGATCAAAACTCCACAACACATCATCATCATCCACAGACACTATTTTCTCCTTTCTTACATCCCACACTCCTTTCATCAAAATCGAGTCTCACAACATCAATGTCACTTCCAACATTCTTGCAAAAAACAAAAACAACACTCCGTTGCAACAAATCATGGAACATGAACTGAACCGTAACACGTGGCAAGATCGTACCGGTATTGATACTGACGTGTTTGTTGCGAGCATTTACTCTATGCCTGATGAAAAAACATGGGTGGTGGTTATGAGACTTCATGTTGCAGCATGCGATAGAACAACTGCGGTATCACTTTTGAGAGAGTTGCTTGTGTTGATGAAAGATGAGGAAAAAGAGGAGAATGTTGTTGCTGTTGAGGATGTTGTTCCTTTGGCGATTGAGGATCTTGTTCCTGGTCGCAAAGGGAAGAAACATATCTGGGAGCGTGGTTTAGACGTGCTTAGTTACTCCGTTAATTCTTTTAGGTTTACTAATTTGAAATTTAATGATACAAAAAATGCTAGGTCTTCACAAGTGGTTAGAATGCAACTCAATCAAACTGATACCAAGAGGGTTTTAGATGTAAGCCCTAATCTATTTTATGTTTGGTTGGTTTAATTACATCGTACAAGATTAAGTACCGGGAATCACCATGATTTTGCAAAAACTGCATATTGTAGCTTCTTTAAAATCATTGTGATTCTTGTTAACCAAAATCAAACATATATATGAGCTTATATTTTTTTCTCTTTTACCAATTAATTTGATATTTGTATGTGTGAAATGAAATTTGTATTTCAGGGTTGTAAGCAGAGTAGGATTAAGCTGTGTGGAGCAATAACTGCAGCGGGATTAATGGCTGCACATAGCAACAAGAATAGTTCTAAGAAGTACGGGATTATTACCCTCACTGATTGCCGGTCCACTCTTGACCCACCTCTCTCAAATCACAATTTTGGTATGTTTATCAGTTGCATTTACTAAACTTATTTTTTTTTAATGAGAACAGAAAATTGATTTATGGTAATTAGCGTAATAATTTGTGATCTAGAACCATTAATATGTATATGGAAGTGGAAGTGGAACTTATATACAACCGACCAATCAACATTCATTCCTTATTCGTGAAAAGAAAAACCGACTCTGCAGCTGGTAGTGTACTATTAGTATTTATAGTAAGTAACAGCAAGCAAAACTTTGCGTACAGGCATAAATGTTGCTTTAAAAACTTTTGAATGATTTTTTTAAGGAATCTAAAAAATGAAAAAATTTGATTTTTTTTCCTTCAAAATTCATTAAAGTATACATAATTTTTTTATGCAAAAATATACCCTCTCTATCTCATCTTAAATGATTCATTAGAACATTTACGCATTAACAAAAAAGTATGTAAGTTCGTAAAATTAATTCAATTGACAATGCGATATTGTTCGATTGAATGTCTTCACTTAGAACCTTACAATTGCGTGCGAATTTAAAATGATTTACCACTTCATCCACTAACAAAAAAAAAAAAGAGGGAATAATATTTTTAAAATATTTTATCAATTACTTTCCATTAAATTGAAAGAGTCGTTTACTTTAACACAATATATTTACAAATATGTCATTTCTTTTGATTCATTGAAAGAGTCGTTTACTTTAACACAATATATTTACAAATATGTCATTTCTTTTGATTCATTAAACAATGCCTATAGACATTTGTTAACATTTTTATTTTATTTTTTAAAAACAACTTTACGTATAGAGATCAATTTCCTTGATACACGAGGTTACTTTGGTTAAAAATATTTAACTTTGATCCTACAGTAGAAACTCTATAAATTAATAATGTCAGGATCGGAGAAATTTATTAATTTAGAGAGTTATTAATTTATCGATAAATTAATAATTATTAATTTAAAGAGTTTTTAAGTAATTATACTATACATACTAAACAAAAAGGCATATTTATGATACGGTGTCTTTGGAGCCTGTTTCGCGAAAGGAAGCACTTATGGCGTCGAACACTCTTCACAACTCTATGATACAATACAAAAATACAACACCTGAGCTATTGGATGCAATAAGAAAAGTTAGAGATGAGCTCCAAACAGACTTGAACTTTAAAGAAGAACATACAACTATTGAATCATATTTCAATAGAGTGTAATATTTTTTTTTTCAGTTTCTATGAATTATTAATTTATGATTTTCTTGGGACCGAAAATTATAAAGGGATCTCTCGAAAAATTATTATCTTATTATTTTATCGAGTTTTTCAATTTTTTACATTGGCCCAAGTCGGGACCGGACAAATTTATTATTTTAGAGAGTTTATTAATTTACCGAGTATTAATTTAAAGAGTTTATACTGTATATGTAAAGTGTTAATTTAAAAGTTTTTCTTTTTGAAGGAAGGAGAAAGCTATGTATAAGACTTCTTGTAATTTAATGTTTCTATAGAGACTAAAAACAAAAATTTAAAAATTTAGAAGACTAAAAATATATTCAACAATTTATTTTATAATATGATGATTTAGAAATATTGATAGGTGCATATGTTTCAATGTATAGGATTTTATCACGCTGCCATCCTCAACAACCACGTGATCAAAGGAGGAGAAAGTCTTTGGGAACTAGCCAAGAGGACTTATGGAGCATTTGCCAACTCTAAGAACAATGACAAGCACTTTTCAGACATGGCTGACATGAACTTTCTTATGTCCAAGGCCATAGAGAACCCTGGTTTGACATCATCCTTAAGAACATCCATAATGTCGGTGTTTGAGGACACGGTGGTTGATGACGGCGGCAAGATGCAACAAGAGGTTGGAGTAGAGGACTACATGGGGTGTGCTTCGGTTCATGGTTTGGGACCATCTATGGGTATTTTTGACACCATAAGGGATGGAAGGCTAGATTGTGTGTGCGTGTATCCATCCCCGTTGCACTCTAGGGACCAAATGCAAGAGCTTATTAACAAGATGAAGGCTATTCTTATTGAAGGTGGAAAAACATACGAGGAATATTGA

Protein sequence

>MS.gene050298.t1

MSTVETKGRNVGGTECSWCKAIRGGTGIAVLSLLITKPIDISRFQTSLHKLQNSHPILRSKLHNTSSSSTDTIFSFLTSHTPFIKIESHNINVTSNILAKNKNNTPLQQIMEHELNRNTWQDRTGIDTDVFVASIYSMPDEKTWVVVMRLHVAACDRTTAVSLLRELLVLMKDEEKEENVVAVEDVVPLAIEDLVPGRKGKKHIWERGLDVLSYSVNSFRFTNLKFNDTKNARSSQVVRMQLNQTDTKRVLDGCKQSRIKLCGAITAAGLMAAHSNKNSSKKYGIITLTDCRSTLDPPLSNHNFGFYHAAILNNHVIKGGESLWELAKRTYGAFANSKNNDKHFSDMADMNFLMSKAIENPGLTSSLRTSIMSVFEDTVVDDGGKMQQEVGVEDYMGCASVHGLGPSMGIFDTIRDGRLDCVCVYPSPLHSRDQMQELINKMKAILIEGGKTYEEY