Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33518.t1 | XP_003602138.1 | 89.8 | 333 | 16 | 1 | 1 | 315 | 34 | 366 | 9.00E-169 | 602.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33518.t1 | Q84VY3 | 67.4 | 337 | 88 | 2 | 1 | 315 | 55 | 391 | 5.4e-130 | 465.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33518.t1 | G7J5N5 | 89.8 | 333 | 16 | 1 | 1 | 315 | 34 | 366 | 6.5e-169 | 602.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050298 | MS.gene33518 | 0.825477 | 4.59E-54 | -1.69E-46 |
| MS.gene050563 | MS.gene33518 | 0.807026 | 6.18E-50 | -1.69E-46 |
| MS.gene050587 | MS.gene33518 | 0.835035 | 2.12E-56 | -1.69E-46 |
| MS.gene052142 | MS.gene33518 | 0.804449 | 2.15E-49 | -1.69E-46 |
| MS.gene053383 | MS.gene33518 | 0.844491 | 7.32E-59 | -1.69E-46 |
| MS.gene05456 | MS.gene33518 | 0.8336 | 4.86E-56 | -1.69E-46 |
| MS.gene059768 | MS.gene33518 | 0.806559 | 7.76E-50 | -1.69E-46 |
| MS.gene060691 | MS.gene33518 | 0.804251 | 2.36E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33518.t1 | MTR_3g090020 | 89.790 | 333 | 16 | 1 | 1 | 315 | 34 | 366 | 0.0 | 612 |
| MS.gene33518.t1 | MTR_3g090100 | 88.288 | 333 | 21 | 1 | 1 | 315 | 34 | 366 | 0.0 | 606 |
| MS.gene33518.t1 | MTR_3g089025 | 78.679 | 333 | 53 | 1 | 1 | 315 | 37 | 369 | 0.0 | 544 |
| MS.gene33518.t1 | MTR_3g090010 | 75.529 | 331 | 63 | 1 | 1 | 313 | 38 | 368 | 0.0 | 526 |
| MS.gene33518.t1 | MTR_1g029150 | 70.536 | 336 | 78 | 2 | 1 | 315 | 55 | 390 | 1.18e-178 | 499 |
| MS.gene33518.t1 | MTR_4g087440 | 61.677 | 334 | 107 | 3 | 1 | 315 | 62 | 393 | 1.50e-152 | 433 |
| MS.gene33518.t1 | MTR_5g024130 | 61.677 | 334 | 107 | 3 | 1 | 315 | 62 | 393 | 1.71e-152 | 433 |
| MS.gene33518.t1 | MTR_3g090110 | 50.000 | 118 | 36 | 1 | 159 | 276 | 1 | 95 | 1.48e-31 | 114 |
| MS.gene33518.t1 | MTR_3g089980 | 60.825 | 97 | 25 | 1 | 180 | 276 | 7 | 90 | 6.24e-29 | 107 |
| MS.gene33518.t1 | MTR_3g089973 | 40.541 | 148 | 44 | 3 | 159 | 306 | 1 | 104 | 1.10e-21 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33518.t1 | AT1G43800 | 67.359 | 337 | 88 | 2 | 1 | 315 | 55 | 391 | 5.18e-169 | 475 |
| MS.gene33518.t1 | AT3G02630 | 60.961 | 333 | 108 | 3 | 1 | 313 | 64 | 394 | 1.49e-149 | 426 |
| MS.gene33518.t1 | AT5G16240 | 60.360 | 333 | 110 | 3 | 1 | 313 | 62 | 392 | 1.67e-147 | 420 |
| MS.gene33518.t1 | AT3G02610 | 58.997 | 339 | 114 | 4 | 1 | 315 | 74 | 411 | 4.58e-145 | 415 |
| MS.gene33518.t1 | AT3G02610 | 58.997 | 339 | 114 | 4 | 1 | 315 | 76 | 413 | 4.85e-145 | 415 |
| MS.gene33518.t1 | AT2G43710 | 59.281 | 334 | 115 | 3 | 1 | 315 | 70 | 401 | 1.03e-144 | 414 |
| MS.gene33518.t1 | AT2G43710 | 59.281 | 334 | 115 | 3 | 1 | 315 | 70 | 401 | 1.15e-144 | 413 |
| MS.gene33518.t1 | AT5G16230 | 58.683 | 334 | 115 | 4 | 4 | 315 | 69 | 401 | 5.97e-144 | 412 |
| MS.gene33518.t1 | AT3G02620 | 58.112 | 339 | 117 | 4 | 1 | 315 | 69 | 406 | 8.07e-143 | 409 |
| MS.gene33518.t1 | AT3G02620 | 58.112 | 339 | 117 | 4 | 1 | 315 | 66 | 403 | 1.01e-142 | 409 |
| MS.gene33518.t1 | AT5G16230 | 58.282 | 326 | 113 | 4 | 12 | 315 | 1 | 325 | 3.02e-140 | 399 |
| MS.gene33518.t1 | AT3G02620 | 58.232 | 328 | 112 | 4 | 12 | 315 | 1 | 327 | 1.07e-138 | 395 |
Find 78 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATGATTATCTTGTGGTTT+TGG | 0.271084 | 3.3:+75731847 | MS.gene33518:CDS |
| AATCTTGTGCTGCATCATTT+TGG | 0.299305 | 3.3:-75732923 | None:intergenic |
| GGGCTATATGGTCGCGCTCT+TGG | 0.312271 | 3.3:+75731969 | MS.gene33518:CDS |
| CCCTCAGTGCCTGCACTTGA+TGG | 0.319684 | 3.3:-75731805 | None:intergenic |
| CCAACTTGTTTATCCATGTT+TGG | 0.336928 | 3.3:-75731907 | None:intergenic |
| GTCTCACACCATGGGCTATA+TGG | 0.337071 | 3.3:+75731957 | MS.gene33518:CDS |
| GTGGACTTGCACCTAGATTA+AGG | 0.352719 | 3.3:+75733139 | MS.gene33518:CDS |
| TTGTTCATGGTGTAGGATTT+GGG | 0.366166 | 3.3:+75732673 | MS.gene33518:intron |
| TGTTCAAATCACTCGAGAAA+TGG | 0.375533 | 3.3:+75731684 | MS.gene33518:CDS |
| CTTGATTAGACGATGGAGAT+TGG | 0.392791 | 3.3:+75733065 | MS.gene33518:CDS |
| TCTGCGGTGGCACAACGTAT+TGG | 0.420320 | 3.3:+75733003 | MS.gene33518:CDS |
| GTTCAAATCACTCGAGAAAT+GGG | 0.429048 | 3.3:+75731685 | MS.gene33518:CDS |
| GTGTACACAAAACCCATGTA+TGG | 0.438769 | 3.3:-75732709 | None:intergenic |
| TCTTCTAGTTTCCTTAATCT+AGG | 0.439715 | 3.3:-75733150 | None:intergenic |
| GATGGAGTTGGCGACGAGAC+TGG | 0.447459 | 3.3:+75731929 | MS.gene33518:CDS |
| GGTTGCCAGCATTCCTCCAC+AGG | 0.450432 | 3.3:-75731737 | None:intergenic |
| AGATCAACAACAAATTTACT+TGG | 0.459272 | 3.3:+75733196 | MS.gene33518:CDS |
| TACCGAAAACAACCCATACA+TGG | 0.467155 | 3.3:+75732696 | MS.gene33518:CDS |
| CTCGTACTTGCACGCGTATG+CGG | 0.473722 | 3.3:+75732802 | MS.gene33518:CDS |
| AGTGGATCCCACCGAGGCTA+TGG | 0.482931 | 3.3:+75732891 | MS.gene33518:CDS |
| GGCTATGGCCACCATAGCCT+CGG | 0.489653 | 3.3:-75732902 | None:intergenic |
| TGGAGATTGGAGAAGCTTGA+GGG | 0.490817 | 3.3:+75733078 | MS.gene33518:CDS |
| TTCACAAAGTGTGTTGCCAT+TGG | 0.492726 | 3.3:+75731709 | MS.gene33518:CDS |
| TCTCTTTAGCCAACCTACCT+AGG | 0.494048 | 3.3:-75732771 | None:intergenic |
| AAAACCACAAGATAATCATC+TGG | 0.498146 | 3.3:-75731845 | None:intergenic |
| TTTATCCATGTTTGGTACGT+AGG | 0.505649 | 3.3:-75731899 | None:intergenic |
| TCGTACTTGCACGCGTATGC+GGG | 0.518633 | 3.3:+75732803 | MS.gene33518:CDS |
| TCGGAAGGTAGTGATGAGTC+TGG | 0.523237 | 3.3:-75731773 | None:intergenic |
| GCTTCCAGATGATTATCTTG+TGG | 0.527931 | 3.3:+75731841 | MS.gene33518:CDS |
| CCCGCTCACTTGATGCATGA+TGG | 0.529067 | 3.3:+75732952 | MS.gene33518:CDS |
| CCAAACATGGATAAACAAGT+TGG | 0.530351 | 3.3:+75731907 | MS.gene33518:CDS |
| CCATCAAGTGCAGGCACTGA+GGG | 0.534660 | 3.3:+75731805 | MS.gene33518:CDS |
| CATTACCTACGTACCAAACA+TGG | 0.539394 | 3.3:+75731894 | MS.gene33518:CDS |
| TCAAACCTGTGGAGGAATGC+TGG | 0.540159 | 3.3:+75731732 | MS.gene33518:CDS |
| CCATCATGCATCAAGTGAGC+GGG | 0.549039 | 3.3:-75732952 | None:intergenic |
| AAAACTTATCTCTATCTCTC+CGG | 0.550395 | 3.3:+75732025 | MS.gene33518:CDS |
| TCCTCCACAGGTTTGACCAA+TGG | 0.550904 | 3.3:-75731725 | None:intergenic |
| AAATGTGGCTCGCTCTTGAA+AGG | 0.555847 | 3.3:-75732734 | None:intergenic |
| ATAAACAAGTTGGATGGAGT+TGG | 0.559959 | 3.3:+75731917 | MS.gene33518:CDS |
| GGATCCCACCGAGGCTATGG+TGG | 0.562827 | 3.3:+75732894 | MS.gene33518:CDS |
| ATGGAGATTGGAGAAGCTTG+AGG | 0.564413 | 3.3:+75733077 | MS.gene33518:CDS |
| CATGCACATATCAACTCTAC+CGG | 0.564833 | 3.3:-75732044 | None:intergenic |
| TGTGGAAAAGCTTCTAGAAG+TGG | 0.566245 | 3.3:+75732873 | MS.gene33518:CDS |
| TGAGTTCATCCATCAAGTGC+AGG | 0.567672 | 3.3:+75731796 | MS.gene33518:CDS |
| TATGGCCACCATAGCCTCGG+TGG | 0.570103 | 3.3:-75732899 | None:intergenic |
| ACATGGATAAACAAGTTGGA+TGG | 0.572710 | 3.3:+75731911 | MS.gene33518:CDS |
| CTTGAGGGTTTGACAAGCGA+AGG | 0.581134 | 3.3:+75733093 | MS.gene33518:CDS |
| CGCATACGCGTGCAAGTACG+AGG | 0.584480 | 3.3:-75732801 | None:intergenic |
| ACACGGAAACCTAGGTAGGT+TGG | 0.591464 | 3.3:+75732762 | MS.gene33518:CDS |
| TTTGTATCACACGGAAACCT+AGG | 0.594979 | 3.3:+75732754 | MS.gene33518:CDS |
| TGGTTCAAGTCTCACACCAT+GGG | 0.600203 | 3.3:+75731949 | MS.gene33518:CDS |
| GCAGGCACTGAGGGATCGAA+CGG | 0.602977 | 3.3:+75731814 | MS.gene33518:CDS |
| TAGAGTTCTTGATTAGACGA+TGG | 0.605110 | 3.3:+75733058 | MS.gene33518:CDS |
| TCCATCATGCATCAAGTGAG+CGG | 0.608659 | 3.3:-75732953 | None:intergenic |
| CTGGTTCAAGTCTCACACCA+TGG | 0.612232 | 3.3:+75731948 | MS.gene33518:CDS |
| ATGGCCACCATAGCCTCGGT+GGG | 0.619166 | 3.3:-75732898 | None:intergenic |
| CGAGCCACATTTGTATCACA+CGG | 0.623581 | 3.3:+75732745 | MS.gene33518:CDS |
| ACCGAAAACAACCCATACAT+GGG | 0.628237 | 3.3:+75732697 | MS.gene33518:CDS |
| GTTGCCATTGGTCAAACCTG+TGG | 0.631709 | 3.3:+75731721 | MS.gene33518:CDS |
| GGTAGGTTGGCTAAAGAGAG+AGG | 0.635441 | 3.3:+75732775 | MS.gene33518:CDS |
| TCCTCACATATGCATTCTCG+TGG | 0.635762 | 3.3:-75732849 | None:intergenic |
| TGTACACAAAACCCATGTAT+GGG | 0.636404 | 3.3:-75732708 | None:intergenic |
| TATCACACGGAAACCTAGGT+AGG | 0.636743 | 3.3:+75732758 | MS.gene33518:CDS |
| GAGCGCGACCATATAGCCCA+TGG | 0.640500 | 3.3:-75731965 | None:intergenic |
| CTCGTGGCGCTTCTCATCAG+CGG | 0.641370 | 3.3:-75732833 | None:intergenic |
| GAATGCATATGTGAGGATTG+TGG | 0.642224 | 3.3:+75732855 | MS.gene33518:CDS |
| GAGTCTGGCAACAAATTATG+TGG | 0.649169 | 3.3:-75731758 | None:intergenic |
| CATGCACAAGAGTTCGTGTG+TGG | 0.649922 | 3.3:+75733120 | MS.gene33518:CDS |
| GGCGGCTATAAAACTTCACA+AGG | 0.650138 | 3.3:-75733238 | None:intergenic |
| GCCATTGGTCAAACCTGTGG+AGG | 0.654988 | 3.3:+75731724 | MS.gene33518:CDS |
| CACTTGATGGATGAACTCAT+CGG | 0.663477 | 3.3:-75731792 | None:intergenic |
| ACCGCTGAAGAAAATAGACA+TGG | 0.664992 | 3.3:+75731992 | MS.gene33518:CDS |
| TCCATCAAGTGCAGGCACTG+AGG | 0.665113 | 3.3:+75731804 | MS.gene33518:CDS |
| GCCACGAGAATGCATATGTG+AGG | 0.667191 | 3.3:+75732848 | MS.gene33518:CDS |
| TGATGGATGAACTCATCGGA+AGG | 0.673548 | 3.3:-75731788 | None:intergenic |
| GTTTCCGTGTGATACAAATG+TGG | 0.700218 | 3.3:-75732749 | None:intergenic |
| TCTAGAAGTGGATCCCACCG+AGG | 0.721401 | 3.3:+75732885 | MS.gene33518:CDS |
| GGTTGGTAGCATGATCACTG+AGG | 0.753309 | 3.3:+75731868 | MS.gene33518:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTATGAAAAATGTTATT+TGG | - | chr3.3:75732647-75732666 | None:intergenic | 10.0% |
| !! | ATAAATTATTTGATTGTTCA+TGG | + | chr3.3:75732660-75732679 | MS.gene33518:intron | 15.0% |
| !! | TGTAATAAATCATATGTGTA+TGG | - | chr3.3:75732430-75732449 | None:intergenic | 20.0% |
| ! | AAACTAACGAGAATAACAAA+TGG | + | chr3.3:75732329-75732348 | MS.gene33518:intron | 25.0% |
| ! | AAGACTATCCAATATTTGAT+TGG | + | chr3.3:75732073-75732092 | MS.gene33518:intron | 25.0% |
| ! | AGATCAACAACAAATTTACT+TGG | + | chr3.3:75733196-75733215 | MS.gene33518:CDS | 25.0% |
| ! | ATGTGATAGATAGAATATGT+TGG | - | chr3.3:75732583-75732602 | None:intergenic | 25.0% |
| !! | ATGTCATTTGTAATACTATG+TGG | - | chr3.3:75732400-75732419 | None:intergenic | 25.0% |
| !! | TGTCATTTGTAATACTATGT+GGG | - | chr3.3:75732399-75732418 | None:intergenic | 25.0% |
| AAAACCACAAGATAATCATC+TGG | - | chr3.3:75731848-75731867 | None:intergenic | 30.0% | |
| AAAACTTATCTCTATCTCTC+CGG | + | chr3.3:75732025-75732044 | MS.gene33518:CDS | 30.0% | |
| AACGACTGTTAAAAAAACAG+AGG | - | chr3.3:75732520-75732539 | None:intergenic | 30.0% | |
| ATAAACGAGTCAAAACATGA+AGG | - | chr3.3:75732218-75732237 | None:intergenic | 30.0% | |
| TATTTGATTGTTCATGGTGT+AGG | + | chr3.3:75732666-75732685 | MS.gene33518:intron | 30.0% | |
| TTAGTTTCAGGCAAATGTAT+TGG | - | chr3.3:75732316-75732335 | None:intergenic | 30.0% | |
| ! | AGATGATTATCTTGTGGTTT+TGG | + | chr3.3:75731847-75731866 | MS.gene33518:CDS | 30.0% |
| ! | TTCTATTTCTTTCTCCTTCA+AGG | + | chr3.3:75732608-75732627 | MS.gene33518:intron | 30.0% |
| ! | TTGAACACTTCTTTCTTTTC+AGG | - | chr3.3:75731671-75731690 | None:intergenic | 30.0% |
| ! | TTGTTATTCTCGTTAGTTTC+AGG | - | chr3.3:75732328-75732347 | None:intergenic | 30.0% |
| !! | TCTTCTAGTTTCCTTAATCT+AGG | - | chr3.3:75733153-75733172 | None:intergenic | 30.0% |
| ATCCAATATTTGATTGGAGC+TGG | + | chr3.3:75732079-75732098 | MS.gene33518:intron | 35.0% | |
| ATTGTTCATGGTGTAGGATT+TGG | + | chr3.3:75732672-75732691 | MS.gene33518:intron | 35.0% | |
| CCAAACATGGATAAACAAGT+TGG | + | chr3.3:75731907-75731926 | MS.gene33518:CDS | 35.0% | |
| GACATATGCATAAACCTTGA+AGG | - | chr3.3:75732625-75732644 | None:intergenic | 35.0% | |
| GTTCAAATCACTCGAGAAAT+GGG | + | chr3.3:75731685-75731704 | MS.gene33518:CDS | 35.0% | |
| TAGAGTTCTTGATTAGACGA+TGG | + | chr3.3:75733058-75733077 | MS.gene33518:CDS | 35.0% | |
| TGTACACAAAACCCATGTAT+GGG | - | chr3.3:75732711-75732730 | None:intergenic | 35.0% | |
| TGTTCAAATCACTCGAGAAA+TGG | + | chr3.3:75731684-75731703 | MS.gene33518:CDS | 35.0% | |
| TTGTTCATGGTGTAGGATTT+GGG | + | chr3.3:75732673-75732692 | MS.gene33518:intron | 35.0% | |
| TTTATCCATGTTTGGTACGT+AGG | - | chr3.3:75731902-75731921 | None:intergenic | 35.0% | |
| ! | AAAAATGATCGAAGAAGCGT+GGG | - | chr3.3:75732984-75733003 | None:intergenic | 35.0% |
| ! | AATCTTGTGCTGCATCATTT+TGG | - | chr3.3:75732926-75732945 | None:intergenic | 35.0% |
| ! | ACATGGATAAACAAGTTGGA+TGG | + | chr3.3:75731911-75731930 | MS.gene33518:CDS | 35.0% |
| ! | ATAAACAAGTTGGATGGAGT+TGG | + | chr3.3:75731917-75731936 | MS.gene33518:CDS | 35.0% |
| ! | CCAACTTGTTTATCCATGTT+TGG | - | chr3.3:75731910-75731929 | None:intergenic | 35.0% |
| ! | TCCATGTCTATTTTCTTCAG+CGG | - | chr3.3:75731996-75732015 | None:intergenic | 35.0% |
| !! | CTTCTTCGATCATTTTTCTG+CGG | + | chr3.3:75732987-75733006 | MS.gene33518:CDS | 35.0% |
| !!! | GATTATCTTGTGGTTTTGGT+TGG | + | chr3.3:75731851-75731870 | MS.gene33518:CDS | 35.0% |
| ACCGAAAACAACCCATACAT+GGG | + | chr3.3:75732697-75732716 | MS.gene33518:CDS | 40.0% | |
| ACCGCTGAAGAAAATAGACA+TGG | + | chr3.3:75731992-75732011 | MS.gene33518:CDS | 40.0% | |
| ATATTTGATTGGAGCTGGCA+TGG | + | chr3.3:75732084-75732103 | MS.gene33518:intron | 40.0% | |
| CATGCACATATCAACTCTAC+CGG | - | chr3.3:75732047-75732066 | None:intergenic | 40.0% | |
| CATTACCTACGTACCAAACA+TGG | + | chr3.3:75731894-75731913 | MS.gene33518:CDS | 40.0% | |
| CTTGATTAGACGATGGAGAT+TGG | + | chr3.3:75733065-75733084 | MS.gene33518:CDS | 40.0% | |
| GAAAAATGATCGAAGAAGCG+TGG | - | chr3.3:75732985-75733004 | None:intergenic | 40.0% | |
| GAATGCATATGTGAGGATTG+TGG | + | chr3.3:75732855-75732874 | MS.gene33518:CDS | 40.0% | |
| GAGTCTGGCAACAAATTATG+TGG | - | chr3.3:75731761-75731780 | None:intergenic | 40.0% | |
| GCTTCCAGATGATTATCTTG+TGG | + | chr3.3:75731841-75731860 | MS.gene33518:CDS | 40.0% | |
| GTGTACACAAAACCCATGTA+TGG | - | chr3.3:75732712-75732731 | None:intergenic | 40.0% | |
| GTTTCCGTGTGATACAAATG+TGG | - | chr3.3:75732752-75732771 | None:intergenic | 40.0% | |
| TACCGAAAACAACCCATACA+TGG | + | chr3.3:75732696-75732715 | MS.gene33518:CDS | 40.0% | |
| TGCCAGCTCCAATCAAATAT+TGG | - | chr3.3:75732084-75732103 | None:intergenic | 40.0% | |
| TTCACAAAGTGTGTTGCCAT+TGG | + | chr3.3:75731709-75731728 | MS.gene33518:CDS | 40.0% | |
| TTTGTATCACACGGAAACCT+AGG | + | chr3.3:75732754-75732773 | MS.gene33518:CDS | 40.0% | |
| ! | CACTTGATGGATGAACTCAT+CGG | - | chr3.3:75731795-75731814 | None:intergenic | 40.0% |
| ! | TGTGGAAAAGCTTCTAGAAG+TGG | + | chr3.3:75732873-75732892 | MS.gene33518:CDS | 40.0% |
| !! | ACCCATGTATGGGTTGTTTT+CGG | - | chr3.3:75732701-75732720 | None:intergenic | 40.0% |
| AAATGTGGCTCGCTCTTGAA+AGG | - | chr3.3:75732737-75732756 | None:intergenic | 45.0% | |
| ATGGAGATTGGAGAAGCTTG+AGG | + | chr3.3:75733077-75733096 | MS.gene33518:CDS | 45.0% | |
| CGAGCCACATTTGTATCACA+CGG | + | chr3.3:75732745-75732764 | MS.gene33518:CDS | 45.0% | |
| GTGGACTTGCACCTAGATTA+AGG | + | chr3.3:75733139-75733158 | MS.gene33518:CDS | 45.0% | |
| TATCACACGGAAACCTAGGT+AGG | + | chr3.3:75732758-75732777 | MS.gene33518:CDS | 45.0% | |
| TCCATCATGCATCAAGTGAG+CGG | - | chr3.3:75732956-75732975 | None:intergenic | 45.0% | |
| TCCTCACATATGCATTCTCG+TGG | - | chr3.3:75732852-75732871 | None:intergenic | 45.0% | |
| TCTCTTTAGCCAACCTACCT+AGG | - | chr3.3:75732774-75732793 | None:intergenic | 45.0% | |
| TGAGTTCATCCATCAAGTGC+AGG | + | chr3.3:75731796-75731815 | MS.gene33518:CDS | 45.0% | |
| TGGAGATTGGAGAAGCTTGA+GGG | + | chr3.3:75733078-75733097 | MS.gene33518:CDS | 45.0% | |
| TGGTTCAAGTCTCACACCAT+GGG | + | chr3.3:75731949-75731968 | MS.gene33518:CDS | 45.0% | |
| ! | TGATGGATGAACTCATCGGA+AGG | - | chr3.3:75731791-75731810 | None:intergenic | 45.0% |
| !! | CTTCGATCATTTTTCTGCGG+TGG | + | chr3.3:75732990-75733009 | MS.gene33518:CDS | 45.0% |
| !!! | GTGCTGCATCATTTTGGCTA+TGG | - | chr3.3:75732920-75732939 | None:intergenic | 45.0% |
| ACACGGAAACCTAGGTAGGT+TGG | + | chr3.3:75732762-75732781 | MS.gene33518:CDS | 50.0% | |
| CATGCACAAGAGTTCGTGTG+TGG | + | chr3.3:75733120-75733139 | MS.gene33518:CDS | 50.0% | |
| CCATCATGCATCAAGTGAGC+GGG | - | chr3.3:75732955-75732974 | None:intergenic | 50.0% | |
| CTGGTTCAAGTCTCACACCA+TGG | + | chr3.3:75731948-75731967 | MS.gene33518:CDS | 50.0% | |
| CTTGAGGGTTTGACAAGCGA+AGG | + | chr3.3:75733093-75733112 | MS.gene33518:CDS | 50.0% | |
| GCCACGAGAATGCATATGTG+AGG | + | chr3.3:75732848-75732867 | MS.gene33518:CDS | 50.0% | |
| GTTGCCATTGGTCAAACCTG+TGG | + | chr3.3:75731721-75731740 | MS.gene33518:CDS | 50.0% | |
| TCAAACCTGTGGAGGAATGC+TGG | + | chr3.3:75731732-75731751 | MS.gene33518:CDS | 50.0% | |
| TCCTCCACAGGTTTGACCAA+TGG | - | chr3.3:75731728-75731747 | None:intergenic | 50.0% | |
| TCGGAAGGTAGTGATGAGTC+TGG | - | chr3.3:75731776-75731795 | None:intergenic | 50.0% | |
| ! | GGTAGGTTGGCTAAAGAGAG+AGG | + | chr3.3:75732775-75732794 | MS.gene33518:CDS | 50.0% |
| ! | GTCTCACACCATGGGCTATA+TGG | + | chr3.3:75731957-75731976 | MS.gene33518:CDS | 50.0% |
| !! | GGTTGGTAGCATGATCACTG+AGG | + | chr3.3:75731868-75731887 | MS.gene33518:CDS | 50.0% |
| CCCGCTCACTTGATGCATGA+TGG | + | chr3.3:75732952-75732971 | MS.gene33518:CDS | 55.0% | |
| CTCGTACTTGCACGCGTATG+CGG | + | chr3.3:75732802-75732821 | MS.gene33518:CDS | 55.0% | |
| GCCATTGGTCAAACCTGTGG+AGG | + | chr3.3:75731724-75731743 | MS.gene33518:CDS | 55.0% | |
| TCGTACTTGCACGCGTATGC+GGG | + | chr3.3:75732803-75732822 | MS.gene33518:CDS | 55.0% | |
| TCTAGAAGTGGATCCCACCG+AGG | + | chr3.3:75732885-75732904 | MS.gene33518:CDS | 55.0% | |
| TCTGCGGTGGCACAACGTAT+TGG | + | chr3.3:75733003-75733022 | MS.gene33518:CDS | 55.0% | |
| ! | TCCATCAAGTGCAGGCACTG+AGG | + | chr3.3:75731804-75731823 | MS.gene33518:CDS | 55.0% |
| !! | CCATCAAGTGCAGGCACTGA+GGG | + | chr3.3:75731805-75731824 | MS.gene33518:CDS | 55.0% |
| AGTGGATCCCACCGAGGCTA+TGG | + | chr3.3:75732891-75732910 | MS.gene33518:CDS | 60.0% | |
| ATGGCCACCATAGCCTCGGT+GGG | - | chr3.3:75732901-75732920 | None:intergenic | 60.0% | |
| CCCTCAGTGCCTGCACTTGA+TGG | - | chr3.3:75731808-75731827 | None:intergenic | 60.0% | |
| CGCATACGCGTGCAAGTACG+AGG | - | chr3.3:75732804-75732823 | None:intergenic | 60.0% | |
| CTCGTGGCGCTTCTCATCAG+CGG | - | chr3.3:75732836-75732855 | None:intergenic | 60.0% | |
| GAGCGCGACCATATAGCCCA+TGG | - | chr3.3:75731968-75731987 | None:intergenic | 60.0% | |
| GATGGAGTTGGCGACGAGAC+TGG | + | chr3.3:75731929-75731948 | MS.gene33518:CDS | 60.0% | |
| GGCTATGGCCACCATAGCCT+CGG | - | chr3.3:75732905-75732924 | None:intergenic | 60.0% | |
| GGGCTATATGGTCGCGCTCT+TGG | + | chr3.3:75731969-75731988 | MS.gene33518:CDS | 60.0% | |
| GGTTGCCAGCATTCCTCCAC+AGG | - | chr3.3:75731740-75731759 | None:intergenic | 60.0% | |
| TATGGCCACCATAGCCTCGG+TGG | - | chr3.3:75732902-75732921 | None:intergenic | 60.0% | |
| !! | GCAGGCACTGAGGGATCGAA+CGG | + | chr3.3:75731814-75731833 | MS.gene33518:CDS | 60.0% |
| GGATCCCACCGAGGCTATGG+TGG | + | chr3.3:75732894-75732913 | MS.gene33518:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 75731662 | 75733245 | 75731662 | ID=MS.gene33518 |
| chr3.3 | mRNA | 75731662 | 75733245 | 75731662 | ID=MS.gene33518.t1;Parent=MS.gene33518 |
| chr3.3 | exon | 75731662 | 75732051 | 75731662 | ID=MS.gene33518.t1.exon1;Parent=MS.gene33518.t1 |
| chr3.3 | CDS | 75731662 | 75732051 | 75731662 | ID=cds.MS.gene33518.t1;Parent=MS.gene33518.t1 |
| chr3.3 | exon | 75732688 | 75733245 | 75732688 | ID=MS.gene33518.t1.exon2;Parent=MS.gene33518.t1 |
| chr3.3 | CDS | 75732688 | 75733245 | 75732688 | ID=cds.MS.gene33518.t1;Parent=MS.gene33518.t1 |
| Gene Sequence |
| Protein sequence |
