Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33526.t1 | RHN64947.1 | 98.2 | 649 | 11 | 1 | 1 | 649 | 1 | 648 | 1.20E-255 | 892.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33526.t1 | F4HX15 | 76.7 | 549 | 123 | 2 | 104 | 649 | 61 | 607 | 3.8e-178 | 626.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33526.t1 | A0A396IPW9 | 98.2 | 649 | 11 | 1 | 1 | 649 | 1 | 648 | 8.5e-256 | 892.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049145 | MS.gene33526 | 0.821723 | 3.47E-53 | -1.69E-46 |
| MS.gene049209 | MS.gene33526 | 0.84757 | 1.06E-59 | -1.69E-46 |
| MS.gene050817 | MS.gene33526 | 0.837468 | 5.11E-57 | -1.69E-46 |
| MS.gene052661 | MS.gene33526 | 0.814712 | 1.34E-51 | -1.69E-46 |
| MS.gene052662 | MS.gene33526 | 0.813029 | 3.15E-51 | -1.69E-46 |
| MS.gene056301 | MS.gene33526 | 0.811597 | 6.47E-51 | -1.69E-46 |
| MS.gene056302 | MS.gene33526 | 0.802923 | 4.46E-49 | -1.69E-46 |
| MS.gene056700 | MS.gene33526 | 0.802761 | 4.81E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33526.t1 | MTR_4g131850 | 98.921 | 649 | 6 | 1 | 1 | 649 | 1 | 648 | 0.0 | 1279 |
| MS.gene33526.t1 | MTR_6g465600 | 41.121 | 214 | 68 | 3 | 698 | 853 | 97 | 310 | 3.00e-50 | 179 |
| MS.gene33526.t1 | MTR_1g052720 | 34.434 | 212 | 83 | 2 | 698 | 853 | 94 | 305 | 1.20e-37 | 143 |
| MS.gene33526.t1 | MTR_8g064960 | 67.123 | 73 | 24 | 0 | 742 | 814 | 27 | 99 | 2.33e-31 | 119 |
| MS.gene33526.t1 | MTR_0246s0040 | 32.749 | 171 | 74 | 4 | 698 | 832 | 123 | 288 | 1.05e-24 | 106 |
| MS.gene33526.t1 | MTR_7g050355 | 40.397 | 151 | 65 | 4 | 698 | 845 | 97 | 225 | 2.84e-24 | 108 |
| MS.gene33526.t1 | MTR_1g087510 | 64.407 | 59 | 21 | 0 | 795 | 853 | 114 | 172 | 8.09e-21 | 90.9 |
| MS.gene33526.t1 | MTR_0091s0080 | 32.394 | 142 | 76 | 2 | 698 | 819 | 296 | 437 | 1.15e-15 | 81.3 |
| MS.gene33526.t1 | MTR_0091s0090 | 29.341 | 167 | 73 | 3 | 698 | 819 | 13 | 179 | 2.75e-14 | 74.3 |
| MS.gene33526.t1 | MTR_6g033605 | 37.500 | 80 | 48 | 2 | 742 | 819 | 30 | 109 | 5.02e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33526.t1 | AT1G61850 | 72.129 | 653 | 175 | 3 | 1 | 649 | 1 | 650 | 0.0 | 920 |
| MS.gene33526.t1 | AT1G61850 | 72.129 | 653 | 175 | 3 | 1 | 649 | 1 | 650 | 0.0 | 919 |
Find 200 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACGTGTTCTTAGGCTATT+TGG | 0.111834 | 8.2:-3464846 | MS.gene33526:CDS |
| GTTGAAAACAATTCTTATTT+TGG | 0.127327 | 8.2:-3464619 | MS.gene33526:CDS |
| ATCGCTTGGATCACTATTTC+TGG | 0.182707 | 8.2:-3459193 | MS.gene33526:CDS |
| TCTGTTAGCTGTTGGGAATT+TGG | 0.203110 | 8.2:-3463730 | MS.gene33526:CDS |
| TTGTGCAGGGGCAAAATTTC+CGG | 0.248438 | 8.2:+3464804 | None:intergenic |
| TTGACAATGTCTTGGGGATT+AGG | 0.260079 | 8.2:-3467084 | None:intergenic |
| GGCATGCTGGCTGTTTCCCT+TGG | 0.275974 | 8.2:-3463303 | MS.gene33526:CDS |
| ATCTTTCTCTTGCAAATATT+AGG | 0.280304 | 8.2:-3464773 | MS.gene33526:CDS |
| GGATGAAGATGCGGTGGATT+TGG | 0.286976 | 8.2:-3466764 | MS.gene33526:CDS |
| TTCGGCCTCTTCTTGACTTC+AGG | 0.287070 | 8.2:-3464960 | MS.gene33526:intron |
| TGTCCTTAAGACCATCATTT+GGG | 0.289193 | 8.2:+3459259 | None:intergenic |
| GCACGTGCTTTGGCAATTCT+TGG | 0.292471 | 8.2:-3463603 | MS.gene33526:intron |
| AGCAACCGTGCAAATGTTAA+AGG | 0.312210 | 8.2:-3463394 | MS.gene33526:CDS |
| CTTGCTGTGCTTAGTATTTG+TGG | 0.315675 | 8.2:-3466550 | MS.gene33526:CDS |
| ACATAAGCGTTGGAGTGATT+TGG | 0.317735 | 8.2:-3460920 | MS.gene33526:intron |
| GTTGTTGATGACGGAGTTCC+CGG | 0.347733 | 8.2:-3466604 | MS.gene33526:CDS |
| AAATCCTCTTGAGTTTCTTC+CGG | 0.349469 | 8.2:-3464823 | MS.gene33526:CDS |
| GAAGGTGTGAAGATTAAAAT+AGG | 0.350839 | 8.2:-3459326 | MS.gene33526:CDS |
| ATATAAACAAGAGGCGTATC+AGG | 0.351327 | 8.2:+3462741 | None:intergenic |
| AAGGAAATTGAAAAGGGAAC+TGG | 0.365657 | 8.2:-3463375 | MS.gene33526:CDS |
| ACAAGCTTGCTCTGCTCTTT+CGG | 0.366051 | 8.2:-3464312 | MS.gene33526:CDS |
| TAAAGCTGCAGCACGTGCTT+TGG | 0.367886 | 8.2:-3463613 | MS.gene33526:CDS |
| TGGCTGAACTACGTGTTCTT+AGG | 0.374132 | 8.2:-3464854 | MS.gene33526:CDS |
| CACACCTTCAACCAACTTAC+GGG | 0.377128 | 8.2:+3459340 | None:intergenic |
| GTGGTGGTGGTGGTCATCAT+TGG | 0.387545 | 8.2:-3466579 | MS.gene33526:CDS |
| CTACAAATTCTCTATTTCCT+TGG | 0.389320 | 8.2:+3464494 | None:intergenic |
| CAATGATTTCAAAACATCCT+TGG | 0.393207 | 8.2:+3464124 | None:intergenic |
| GCATGCTGGCTGTTTCCCTT+GGG | 0.403127 | 8.2:-3463302 | MS.gene33526:CDS |
| TCGGAAATTGACAATGTCTT+GGG | 0.404545 | 8.2:-3467091 | None:intergenic |
| CAGCTGTCCTGTGTCTTCTC+TGG | 0.413964 | 8.2:-3459386 | MS.gene33526:CDS |
| GGAGTTCCCGGTGGTGGTGG+TGG | 0.417165 | 8.2:-3466592 | MS.gene33526:CDS |
| TTGTCCTTAAGACCATCATT+TGG | 0.417856 | 8.2:+3459258 | None:intergenic |
| TCACACCTTCAACCAACTTA+CGG | 0.420710 | 8.2:+3459339 | None:intergenic |
| ACGTTTGTTGCGTTCTGATT+TGG | 0.422013 | 8.2:-3466644 | MS.gene33526:CDS |
| TGGAACACAACAAGCTTGTT+CGG | 0.423471 | 8.2:-3464978 | MS.gene33526:CDS |
| GCTTCATTGTCCTTAGGAAC+AGG | 0.426187 | 8.2:+3463111 | None:intergenic |
| AATGTTAAAGGAAATTGAAA+AGG | 0.431013 | 8.2:-3463382 | MS.gene33526:CDS |
| CTCAATTGTCTCTCAAGATC+AGG | 0.432514 | 8.2:-3466926 | MS.gene33526:CDS |
| TTAATATGTGGTACATCAAC+GGG | 0.435347 | 8.2:-3463327 | MS.gene33526:CDS |
| ATCGGAAATTGACAATGTCT+TGG | 0.439978 | 8.2:-3467092 | None:intergenic |
| GATTTCAGAACTATTCCAAT+TGG | 0.440220 | 8.2:+3464233 | None:intergenic |
| AGGCTAGCTCTGTTAGCTGT+TGG | 0.440764 | 8.2:-3463738 | MS.gene33526:CDS |
| TGTCTTCTCTGGTGAGTGGC+AGG | 0.441709 | 8.2:-3459375 | MS.gene33526:CDS |
| GTTCCCGGTGGTGGTGGTGG+TGG | 0.444753 | 8.2:-3466589 | MS.gene33526:CDS |
| GGCTAGCTCTGTTAGCTGTT+GGG | 0.445269 | 8.2:-3463737 | MS.gene33526:CDS |
| GTTGCAGCTTCATTGTCCTT+AGG | 0.446440 | 8.2:+3463105 | None:intergenic |
| ACCAAGCTCGGGTGGTAAAA+CGG | 0.446885 | 8.2:+3465713 | None:intergenic |
| GGAATTGGTGGAGTTGTCAT+TGG | 0.447911 | 8.2:-3464998 | MS.gene33526:CDS |
| GACGGAGTTCCCGGTGGTGG+TGG | 0.448076 | 8.2:-3466595 | MS.gene33526:CDS |
| ACTCCGTCATCAACAACTTC+CGG | 0.450785 | 8.2:+3466610 | None:intergenic |
| GGCAATTGTGTAAGCTCTAC+TGG | 0.451924 | 8.2:+3465774 | None:intergenic |
| ACTTAGACAGTGTGTGGAAT+TGG | 0.456976 | 8.2:-3465013 | MS.gene33526:CDS |
| TGGAGTGATTTGGAGGTCAT+AGG | 0.458402 | 8.2:-3460910 | MS.gene33526:intron |
| GCTTCTTAGCTCACCAAGCT+CGG | 0.458949 | 8.2:+3465701 | None:intergenic |
| TCCCTCTTACTGCACGCCTC+AGG | 0.461855 | 8.2:+3463478 | None:intergenic |
| GCAGACATCATGCAACCAAT+TGG | 0.465698 | 8.2:-3464248 | MS.gene33526:CDS |
| ATGGCGAAGGCTGTTAATTC+CGG | 0.466816 | 8.2:-3466697 | MS.gene33526:CDS |
| TATTTGTGGCTGTGGCTTGT+CGG | 0.467095 | 8.2:-3466536 | MS.gene33526:intron |
| AATTAGAAGCTGGGATGGCT+TGG | 0.468391 | 8.2:-3459509 | MS.gene33526:intron |
| GCGTTCTGATTTGGTTTCAA+CGG | 0.468528 | 8.2:-3466635 | MS.gene33526:CDS |
| GTGCTTAGTATTTGTGGCTG+TGG | 0.470031 | 8.2:-3466544 | MS.gene33526:CDS |
| TGCGGTGGATTTGGTTATGA+AGG | 0.474715 | 8.2:-3466755 | MS.gene33526:CDS |
| ATACAGATATAACCTCTTCC+CGG | 0.477478 | 8.2:+3464204 | None:intergenic |
| TACATCAACGGGTGGCATGC+TGG | 0.481638 | 8.2:-3463316 | MS.gene33526:CDS |
| CAATGTCTTGGGGATTAGGT+TGG | 0.482505 | 8.2:-3467080 | MS.gene33526:CDS |
| CGAGAGCAGATGCTAGTAAA+GGG | 0.482671 | 8.2:+3464533 | None:intergenic |
| TCAAGGACCTTCGTATCGCT+TGG | 0.482716 | 8.2:-3459207 | MS.gene33526:CDS |
| AACCTGAGGCGTGCAGTAAG+AGG | 0.486179 | 8.2:-3463480 | MS.gene33526:CDS |
| TTGATTACCTGGGGTATACA+TGG | 0.487425 | 8.2:-3459439 | MS.gene33526:CDS |
| ATCAGTAAACGTGCAAATAG+AGG | 0.487988 | 8.2:-3464727 | MS.gene33526:intron |
| TCTCACACTCATTGATTACC+TGG | 0.489446 | 8.2:-3459450 | MS.gene33526:CDS |
| GCAGATTCCTCAACTCCATC+AGG | 0.491166 | 8.2:+3459807 | None:intergenic |
| GGGAAAGTATATTTCACTGA+TGG | 0.492561 | 8.2:-3459908 | MS.gene33526:intron |
| AGTATATTTCACTGATGGGT+GGG | 0.493506 | 8.2:-3459903 | MS.gene33526:CDS |
| ATCATCGGAGGATGAAGATC+AGG | 0.493866 | 8.2:-3466872 | MS.gene33526:CDS |
| GAAGACATATACAAGAATCT+TGG | 0.494511 | 8.2:-3463252 | MS.gene33526:intron |
| AGGGCTTCGCATACTCTCAA+TGG | 0.509079 | 8.2:-3463439 | MS.gene33526:CDS |
| GGAATAGTTCTGAAATCTGC+AGG | 0.511587 | 8.2:-3464227 | MS.gene33526:CDS |
| CTTCTTAGCTCACCAAGCTC+GGG | 0.511767 | 8.2:+3465702 | None:intergenic |
| TTTAATATGTGGTACATCAA+CGG | 0.512865 | 8.2:-3463328 | MS.gene33526:CDS |
| AGGACAATGAAGCTGCAACT+TGG | 0.514561 | 8.2:-3463101 | MS.gene33526:CDS |
| CAAGGAAATAGAGAATTTGT+AGG | 0.514814 | 8.2:-3464493 | MS.gene33526:CDS |
| AAAGATGACGAAGTTTGTGC+AGG | 0.516017 | 8.2:+3464790 | None:intergenic |
| CCGAGAGCAGATGCTAGTAA+AGG | 0.516188 | 8.2:+3464532 | None:intergenic |
| AGGAAATTGAAAAGGGAACT+GGG | 0.516701 | 8.2:-3463374 | MS.gene33526:CDS |
| CGTTGCCGTAGCTGAGAGTA+AGG | 0.518221 | 8.2:+3467034 | None:intergenic |
| GACAATTGAGGAAGCTGAAG+AGG | 0.520217 | 8.2:+3466939 | None:intergenic |
| AGTTCTGAAATCTGCAGGCC+GGG | 0.521734 | 8.2:-3464222 | MS.gene33526:CDS |
| GAAATCTGCAGGCCGGGAAG+AGG | 0.525674 | 8.2:-3464216 | MS.gene33526:CDS |
| TATATCTGTATTGCAAGTTG+TGG | 0.526342 | 8.2:-3464192 | MS.gene33526:CDS |
| AACACGCTTGTCTCTGTACC+TGG | 0.527635 | 8.2:-3465654 | MS.gene33526:intron |
| GCGACGATTCTCCAGACAAA+AGG | 0.529772 | 8.2:+3463707 | None:intergenic |
| AGATGAGGCTGATGATGAAC+GGG | 0.530501 | 8.2:+3466972 | None:intergenic |
| GTCCTTAAGACCATCATTTG+GGG | 0.531936 | 8.2:+3459260 | None:intergenic |
| TGTTGCATTGCAGCTGATGA+AGG | 0.532357 | 8.2:-3464270 | MS.gene33526:CDS |
| ATTGCAAGTTGTGGTTCAGT+TGG | 0.535256 | 8.2:-3464183 | MS.gene33526:CDS |
| CACCGAGGAGGCTGGTAACA+AGG | 0.536315 | 8.2:-3459300 | MS.gene33526:CDS |
| TCAACTCCATCAGGAAAAGA+TGG | 0.537397 | 8.2:+3459816 | None:intergenic |
| ATTAGGTTGGAAGAGACCTT+CGG | 0.540138 | 8.2:-3467067 | MS.gene33526:CDS |
| TGAGGAAGCTGAAGAGGATG+AGG | 0.540821 | 8.2:+3466945 | None:intergenic |
| TACTCTCAATGGATGGAGGT+GGG | 0.540947 | 8.2:-3463428 | MS.gene33526:CDS |
| ATGGATGGAGGTGGGATGAA+AGG | 0.541144 | 8.2:-3463420 | MS.gene33526:CDS |
| ACAACAGTATCCTGCGGCAT+CGG | 0.544521 | 8.2:+3466811 | None:intergenic |
| CGAATTGGATTGGTCATCAT+CGG | 0.544616 | 8.2:-3466887 | MS.gene33526:CDS |
| GAGTTGTTTGATTTAATATG+TGG | 0.545334 | 8.2:-3463339 | MS.gene33526:CDS |
| TGCCATGTATGATAGGGCTA+TGG | 0.546527 | 8.2:-3464874 | MS.gene33526:intron |
| AACCTTGTTACCAGCCTCCT+CGG | 0.547567 | 8.2:+3459298 | None:intergenic |
| GGAAAGTATATTTCACTGAT+GGG | 0.547646 | 8.2:-3459907 | MS.gene33526:intron |
| AATTTCCTTTAACATTTGCA+CGG | 0.550413 | 8.2:+3463389 | None:intergenic |
| TTCCACCTTACTCTCAGCTA+CGG | 0.552259 | 8.2:-3467039 | MS.gene33526:CDS |
| AGCGATACGAAGGTCCTTGA+CGG | 0.552340 | 8.2:+3459210 | None:intergenic |
| ATAGGCGTCACCGAGGAGGC+TGG | 0.552984 | 8.2:-3459308 | MS.gene33526:CDS |
| GGGAGACAAGTGGCAAAGCA+AGG | 0.553371 | 8.2:-3463459 | MS.gene33526:CDS |
| ATACTCTCAATGGATGGAGG+TGG | 0.557835 | 8.2:-3463429 | MS.gene33526:CDS |
| TAAGCGTTGGAGTGATTTGG+AGG | 0.557865 | 8.2:-3460917 | MS.gene33526:intron |
| AAGATGACGAAGTTTGTGCA+GGG | 0.559753 | 8.2:+3464791 | None:intergenic |
| GTGCCACCCTCGAAAAGCAT+TGG | 0.560079 | 8.2:-3459233 | MS.gene33526:CDS |
| AAGTCATTAACTTCATCCCA+AGG | 0.561183 | 8.2:+3463286 | None:intergenic |
| TGATTTGGTTTCAACGGCGC+CGG | 0.561223 | 8.2:-3466629 | MS.gene33526:CDS |
| TAGTTCTGAAATCTGCAGGC+CGG | 0.561586 | 8.2:-3464223 | MS.gene33526:CDS |
| ATGTTAAAGGAAATTGAAAA+GGG | 0.565564 | 8.2:-3463381 | MS.gene33526:CDS |
| ACCTGAGGCGTGCAGTAAGA+GGG | 0.567487 | 8.2:-3463479 | MS.gene33526:CDS |
| CTACGGCAACGACGATCCAC+CGG | 0.567542 | 8.2:-3467022 | MS.gene33526:CDS |
| GTATACATGGAAATTGATGA+TGG | 0.568151 | 8.2:-3459426 | MS.gene33526:CDS |
| CCTTTACTAGCATCTGCTCT+CGG | 0.570398 | 8.2:-3464532 | MS.gene33526:CDS |
| GTATATTTCACTGATGGGTG+GGG | 0.571003 | 8.2:-3459902 | MS.gene33526:CDS |
| AGTGCCATCAGTCTGTTGAC+CGG | 0.571784 | 8.2:+3466678 | None:intergenic |
| GTCTCTCAAGATCAGGACCT+CGG | 0.571788 | 8.2:-3466919 | MS.gene33526:CDS |
| GCGAGAACTTCTCTTACGCA+TGG | 0.572238 | 8.2:-3463661 | MS.gene33526:CDS |
| TGAGCTGACGCCTCGTGAAG+AGG | 0.574762 | 8.2:-3466785 | MS.gene33526:CDS |
| AAAACGGAATATAAGAGAGA+AGG | 0.574853 | 8.2:+3464570 | None:intergenic |
| AAGTATATTTCACTGATGGG+TGG | 0.575041 | 8.2:-3459904 | MS.gene33526:CDS |
| CAACAGAATCATCAGAGGCA+AGG | 0.576794 | 8.2:+3464288 | None:intergenic |
| GGAGACAAGTGGCAAAGCAA+GGG | 0.577630 | 8.2:-3463458 | MS.gene33526:CDS |
| CTTCGCATACTCTCAATGGA+TGG | 0.578523 | 8.2:-3463435 | MS.gene33526:CDS |
| TAGACAGTGTGTGGAATTGG+TGG | 0.580398 | 8.2:-3465010 | MS.gene33526:CDS |
| TAAGCTTCAATCGCAACTCA+TGG | 0.581385 | 8.2:-3466842 | MS.gene33526:CDS |
| AATGCCCGTAAGTTGGTTGA+AGG | 0.582797 | 8.2:-3459344 | MS.gene33526:CDS |
| TTATCTAAATAACAACAAGC+TGG | 0.583175 | 8.2:-3465736 | MS.gene33526:CDS |
| TCGAAAAGCATTGGCCGTCA+AGG | 0.585937 | 8.2:-3459224 | MS.gene33526:CDS |
| GGTGGCGTTACCGATGCCGC+AGG | 0.587164 | 8.2:-3466821 | MS.gene33526:CDS |
| GGCTGATGATGAACGGGAGG+AGG | 0.588313 | 8.2:+3466978 | None:intergenic |
| GATGACGGAGTTCCCGGTGG+TGG | 0.588558 | 8.2:-3466598 | MS.gene33526:CDS |
| CTCACACTCATTGATTACCT+GGG | 0.588643 | 8.2:-3459449 | MS.gene33526:CDS |
| CTGATCTTGAGAGACAATTG+AGG | 0.590018 | 8.2:+3466927 | None:intergenic |
| CTTAGCTCACCAAGCTCGGG+TGG | 0.591724 | 8.2:+3465705 | None:intergenic |
| GATGTTCGAGCGAGAGACTC+CGG | 0.592305 | 8.2:+3467003 | None:intergenic |
| TCCTTAAGACCATCATTTGG+GGG | 0.597486 | 8.2:+3459261 | None:intergenic |
| CGCATACTCTCAATGGATGG+AGG | 0.601188 | 8.2:-3463432 | MS.gene33526:CDS |
| CGGAAATTGACAATGTCTTG+GGG | 0.601323 | 8.2:-3467090 | None:intergenic |
| TCAATTTCCATGTATACCCC+AGG | 0.602618 | 8.2:+3459432 | None:intergenic |
| AGTGGAACTTAGACAGTGTG+TGG | 0.602816 | 8.2:-3465019 | MS.gene33526:CDS |
| ACTTTACTCCATAGGTGCAA+AGG | 0.603347 | 8.2:-3463758 | MS.gene33526:intron |
| AACAGAATCATCAGAGGCAA+GGG | 0.605414 | 8.2:+3464289 | None:intergenic |
| TAGAGCTATTACCATGGCGA+AGG | 0.613032 | 8.2:-3466710 | MS.gene33526:CDS |
| AAGATGAGGCTGATGATGAA+CGG | 0.613267 | 8.2:+3466971 | None:intergenic |
| TGAAGAGGATGAAGATGCGG+TGG | 0.614427 | 8.2:-3466770 | MS.gene33526:CDS |
| GGTGTGCAATGCCCGTAAGT+TGG | 0.616948 | 8.2:-3459351 | MS.gene33526:CDS |
| CCTGTGTCTTCTCTGGTGAG+TGG | 0.625192 | 8.2:-3459379 | MS.gene33526:CDS |
| GGTCAACAGACTGATGGCAC+TGG | 0.627043 | 8.2:-3466676 | MS.gene33526:CDS |
| ATTTCCGGAAGAAACTCAAG+AGG | 0.627485 | 8.2:+3464819 | None:intergenic |
| AGTCATTAACTTCATCCCAA+GGG | 0.628694 | 8.2:+3463287 | None:intergenic |
| AATTCCGGTCAACAGACTGA+TGG | 0.629666 | 8.2:-3466682 | MS.gene33526:CDS |
| GCGCCGGAAGTTGTTGATGA+CGG | 0.632676 | 8.2:-3466613 | MS.gene33526:CDS |
| TAGTGATCCAAGCGATACGA+AGG | 0.633350 | 8.2:+3459200 | None:intergenic |
| GGAATTAACAGCCTTCGCCA+TGG | 0.635883 | 8.2:+3466699 | None:intergenic |
| CTTCTCTGGTGAGTGGCAGG+CGG | 0.637002 | 8.2:-3459372 | MS.gene33526:CDS |
| TCCGCTTAGAGCTATTACCA+TGG | 0.644093 | 8.2:-3466716 | MS.gene33526:CDS |
| GTTGAGGAATCTGCATGGAG+AGG | 0.645935 | 8.2:-3459798 | MS.gene33526:CDS |
| TGAGGCTGATGATGAACGGG+AGG | 0.649248 | 8.2:+3466975 | None:intergenic |
| GGAAAGATTATGCAAGACCA+AGG | 0.652564 | 8.2:-3464511 | MS.gene33526:CDS |
| TGCCGTAGCTGAGAGTAAGG+TGG | 0.656629 | 8.2:+3467037 | None:intergenic |
| TAAAATAGGCGTCACCGAGG+AGG | 0.656644 | 8.2:-3459312 | MS.gene33526:CDS |
| ATTGGATTGGTCATCATCGG+AGG | 0.659914 | 8.2:-3466884 | MS.gene33526:CDS |
| GCAAGCTTTCAGAAGTAACA+AGG | 0.661721 | 8.2:+3463682 | None:intergenic |
| CAATGCAACAGAATCATCAG+AGG | 0.663886 | 8.2:+3464283 | None:intergenic |
| ATGGAGTTGAGGAATCTGCA+TGG | 0.665616 | 8.2:-3459803 | MS.gene33526:CDS |
| AGATGACGAAGTTTGTGCAG+GGG | 0.677629 | 8.2:+3464792 | None:intergenic |
| TGCAGTAAGAGGGAGACAAG+TGG | 0.678041 | 8.2:-3463469 | MS.gene33526:CDS |
| AGAGGATGAGGATGAAGATG+AGG | 0.679566 | 8.2:+3466957 | None:intergenic |
| TCACACTCATTGATTACCTG+GGG | 0.679759 | 8.2:-3459448 | MS.gene33526:CDS |
| TCGTGAAGAGGATGAAGATG+CGG | 0.680592 | 8.2:-3466773 | MS.gene33526:CDS |
| TAGGAGAAAATGAAAACCTG+AGG | 0.682129 | 8.2:-3463494 | MS.gene33526:CDS |
| GTAAGGTGGAAGATTTCCGA+AGG | 0.684626 | 8.2:+3467051 | None:intergenic |
| ATGTGCATATAAAGATCCAG+AGG | 0.688217 | 8.2:-3464093 | MS.gene33526:intron |
| GCTTCAATCGCAACTCATGG+TGG | 0.694227 | 8.2:-3466839 | MS.gene33526:CDS |
| GCATCTTCATCCTCTTCACG+AGG | 0.696951 | 8.2:+3466775 | None:intergenic |
| ATATGTGGTACATCAACGGG+TGG | 0.697236 | 8.2:-3463324 | MS.gene33526:CDS |
| CCAATTCGATGCGAAAACCG+AGG | 0.697261 | 8.2:+3466902 | None:intergenic |
| GTTCGAGCGAGAGACTCCGG+TGG | 0.699970 | 8.2:+3467006 | None:intergenic |
| CCACTCACCAGAGAAGACAC+AGG | 0.704700 | 8.2:+3459379 | None:intergenic |
| TGCTGTGAAGATGTTGACCA+AGG | 0.705840 | 8.2:-3464141 | MS.gene33526:CDS |
| TCAATTACAACAGTATCCTG+CGG | 0.718408 | 8.2:+3466805 | None:intergenic |
| AACAAGGTTCTATATCTATG+CGG | 0.720290 | 8.2:-3459284 | MS.gene33526:CDS |
| GCTGCAGCTTTATAAACACG+TGG | 0.720874 | 8.2:+3463624 | None:intergenic |
| AAGCAGTGACAACTGTCACG+TGG | 0.724979 | 8.2:-3464431 | MS.gene33526:intron |
| GCCATGGTAATAGCTCTAAG+CGG | 0.732112 | 8.2:+3466715 | None:intergenic |
| GATTAAAATAGGCGTCACCG+AGG | 0.732788 | 8.2:-3459315 | MS.gene33526:CDS |
| GTTGATGACGGAGTTCCCGG+TGG | 0.738064 | 8.2:-3466601 | MS.gene33526:CDS |
| GTAAAGACGAGAATGCAGTG+AGG | 0.772562 | 8.2:-3464471 | MS.gene33526:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 3459184 | 3467100 | 3459184 | ID=MS.gene33526 |
| chr8.2 | mRNA | 3459184 | 3467100 | 3459184 | ID=MS.gene33526.t1;Parent=MS.gene33526 |
| chr8.2 | exon | 3466537 | 3467100 | 3466537 | ID=MS.gene33526.t1.exon1;Parent=MS.gene33526.t1 |
| chr8.2 | CDS | 3466537 | 3467100 | 3466537 | ID=cds.MS.gene33526.t1;Parent=MS.gene33526.t1 |
| chr8.2 | exon | 3465655 | 3465802 | 3465655 | ID=MS.gene33526.t1.exon2;Parent=MS.gene33526.t1 |
| chr8.2 | CDS | 3465655 | 3465802 | 3465655 | ID=cds.MS.gene33526.t1;Parent=MS.gene33526.t1 |
| chr8.2 | exon | 3464961 | 3465039 | 3464961 | ID=MS.gene33526.t1.exon3;Parent=MS.gene33526.t1 |
| chr8.2 | CDS | 3464961 | 3465039 | 3464961 | ID=cds.MS.gene33526.t1;Parent=MS.gene33526.t1 |
| chr8.2 | exon | 3464728 | 3464881 | 3464728 | ID=MS.gene33526.t1.exon4;Parent=MS.gene33526.t1 |
| chr8.2 | CDS | 3464728 | 3464881 | 3464728 | ID=cds.MS.gene33526.t1;Parent=MS.gene33526.t1 |
| chr8.2 | exon | 3464432 | 3464641 | 3464432 | ID=MS.gene33526.t1.exon5;Parent=MS.gene33526.t1 |
| chr8.2 | CDS | 3464432 | 3464641 | 3464432 | ID=cds.MS.gene33526.t1;Parent=MS.gene33526.t1 |
| chr8.2 | exon | 3464094 | 3464339 | 3464094 | ID=MS.gene33526.t1.exon6;Parent=MS.gene33526.t1 |
| chr8.2 | CDS | 3464094 | 3464339 | 3464094 | ID=cds.MS.gene33526.t1;Parent=MS.gene33526.t1 |
| chr8.2 | exon | 3463604 | 3463766 | 3463604 | ID=MS.gene33526.t1.exon7;Parent=MS.gene33526.t1 |
| chr8.2 | CDS | 3463604 | 3463766 | 3463604 | ID=cds.MS.gene33526.t1;Parent=MS.gene33526.t1 |
| chr8.2 | exon | 3463253 | 3463513 | 3463253 | ID=MS.gene33526.t1.exon8;Parent=MS.gene33526.t1 |
| chr8.2 | CDS | 3463253 | 3463513 | 3463253 | ID=cds.MS.gene33526.t1;Parent=MS.gene33526.t1 |
| chr8.2 | exon | 3463007 | 3463153 | 3463007 | ID=MS.gene33526.t1.exon9;Parent=MS.gene33526.t1 |
| chr8.2 | CDS | 3463007 | 3463153 | 3463007 | ID=cds.MS.gene33526.t1;Parent=MS.gene33526.t1 |
| chr8.2 | exon | 3462749 | 3462798 | 3462749 | ID=MS.gene33526.t1.exon10;Parent=MS.gene33526.t1 |
| chr8.2 | CDS | 3462749 | 3462798 | 3462749 | ID=cds.MS.gene33526.t1;Parent=MS.gene33526.t1 |
| chr8.2 | exon | 3461853 | 3461897 | 3461853 | ID=MS.gene33526.t1.exon11;Parent=MS.gene33526.t1 |
| chr8.2 | CDS | 3461853 | 3461897 | 3461853 | ID=cds.MS.gene33526.t1;Parent=MS.gene33526.t1 |
| chr8.2 | exon | 3460911 | 3460935 | 3460911 | ID=MS.gene33526.t1.exon12;Parent=MS.gene33526.t1 |
| chr8.2 | CDS | 3460911 | 3460935 | 3460911 | ID=cds.MS.gene33526.t1;Parent=MS.gene33526.t1 |
| chr8.2 | exon | 3459796 | 3459923 | 3459796 | ID=MS.gene33526.t1.exon13;Parent=MS.gene33526.t1 |
| chr8.2 | CDS | 3459796 | 3459923 | 3459796 | ID=cds.MS.gene33526.t1;Parent=MS.gene33526.t1 |
| chr8.2 | exon | 3459184 | 3459525 | 3459184 | ID=MS.gene33526.t1.exon14;Parent=MS.gene33526.t1 |
| chr8.2 | CDS | 3459184 | 3459525 | 3459184 | ID=cds.MS.gene33526.t1;Parent=MS.gene33526.t1 |
| Gene Sequence |
| Protein sequence |
