AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene33550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33550.t1 MTR_1g104550 95.152 660 29 3 1 659 1 658 0.0 1298
MS.gene33550.t1 MTR_1g104590 53.211 654 292 5 18 659 7 658 0.0 743
MS.gene33550.t1 MTR_4g117660 48.661 635 310 6 34 659 33 660 0.0 643
MS.gene33550.t1 MTR_4g045887 45.758 660 343 7 10 659 4 658 0.0 629
MS.gene33550.t1 MTR_4g117610 46.203 632 329 5 34 659 27 653 0.0 614
MS.gene33550.t1 MTR_4g117670 50.181 554 267 4 112 659 26 576 0.0 582
MS.gene33550.t1 MTR_3g080500 45.639 642 326 10 34 659 78 712 0.0 563
MS.gene33550.t1 MTR_3g077080 29.765 682 405 21 34 659 8 671 8.58e-79 265
MS.gene33550.t1 MTR_8g069505 29.308 679 412 20 34 659 8 671 3.09e-78 263
MS.gene33550.t1 MTR_8g069505 29.394 677 410 20 34 657 32 693 3.57e-78 264
MS.gene33550.t1 MTR_3g077080 29.765 682 405 21 34 659 73 736 4.34e-78 265
MS.gene33550.t1 MTR_8g069505 29.308 679 412 20 34 659 69 732 7.78e-78 263
MS.gene33550.t1 MTR_8g069505 29.308 679 412 20 34 659 82 745 9.63e-78 263
MS.gene33550.t1 MTR_5g033170 29.118 680 413 20 34 659 44 708 3.77e-77 261
MS.gene33550.t1 MTR_5g033170 29.042 668 405 20 34 647 44 696 3.48e-74 253
MS.gene33550.t1 MTR_3g077080 30.943 530 328 13 153 659 1 515 8.68e-72 242
MS.gene33550.t1 MTR_8g069505 28.287 502 298 16 34 487 8 495 1.70e-49 182
MS.gene33550.t1 MTR_8g069505 28.287 502 298 16 34 487 82 569 3.98e-49 182
MS.gene33550.t1 MTR_8g069505 28.287 502 298 16 34 487 69 556 4.80e-49 182
MS.gene33550.t1 MTR_8g069505 28.287 502 298 16 34 487 82 569 5.13e-49 182
MS.gene33550.t1 MTR_4g098910 46.535 101 46 3 67 163 27 123 1.49e-17 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33550.t1 AT4G14940 61.409 653 242 7 13 659 1 649 0.0 838
MS.gene33550.t1 AT1G31690 50.786 636 302 6 33 659 26 659 0.0 657
MS.gene33550.t1 AT1G31710 50.313 638 303 7 34 659 28 663 0.0 653
MS.gene33550.t1 AT1G31670 50.940 638 282 11 33 659 106 723 0.0 632
MS.gene33550.t1 AT1G62810 44.688 640 334 10 34 659 60 693 0.0 552
MS.gene33550.t1 AT4G12290 43.895 647 335 13 34 659 82 721 0.0 542
MS.gene33550.t1 AT3G43670 44.531 640 335 10 34 659 41 674 0.0 540
MS.gene33550.t1 AT4G12290 42.211 597 317 13 34 609 82 671 1.51e-155 464
MS.gene33550.t1 AT4G12280 48.736 277 133 3 391 659 5 280 2.31e-94 293
MS.gene33550.t1 AT4G12270 39.467 375 196 12 34 383 84 452 3.43e-80 262
MS.gene33550.t1 AT2G42490 28.719 679 416 20 34 659 80 743 1.57e-76 260

Find 153 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTAACTTTGTCAGTTTATT+AGG 0.060118 1.3:-71513032 None:intergenic
TATAGAAGCATGACACTTTA+AGG 0.116614 1.3:-71511056 None:intergenic
CCCTGAACTGTTGGCATTAC+TGG 0.128920 1.3:-71514284 None:intergenic
TTTATGGATGTTGGGGAATT+TGG 0.164942 1.3:+71511474 MS.gene33550:CDS
ATGAAGTGAAATGGGGTAAT+TGG 0.194135 1.3:+71511286 MS.gene33550:CDS
GTTACATGTAGCGACTATTT+TGG 0.198780 1.3:-71511232 None:intergenic
CCATCTTTCTGACTTATTAT+AGG 0.201107 1.3:-71513171 None:intergenic
GGGATGAATCAGTAAATATT+TGG 0.213588 1.3:+71511079 MS.gene33550:CDS
CATCTTTCTGACTTATTATA+GGG 0.253755 1.3:-71513170 None:intergenic
TCCAGTAATGCCAACAGTTC+AGG 0.266063 1.3:+71514283 MS.gene33550:CDS
AATTACCCCATTTCACTTCA+TGG 0.275191 1.3:-71511284 None:intergenic
ACAAAATGATAGGTAATATT+AGG 0.286083 1.3:-71510691 None:intergenic
AATCAACAATCCCACAAAAT+TGG 0.291880 1.3:+71511662 MS.gene33550:CDS
AAATTTGTACCTTCAGCTTT+AGG 0.299315 1.3:-71511189 None:intergenic
TTAAAGTGTCATGCTTCTAT+AGG 0.300359 1.3:+71511058 MS.gene33550:CDS
TAGCTCATGGGTTTCACCTT+TGG 0.306251 1.3:-71510815 None:intergenic
CTAACTTTGTCAGTTTATTA+GGG 0.313939 1.3:-71513031 None:intergenic
AATATAGGAGAGTGATGTAT+AGG 0.327555 1.3:+71511388 MS.gene33550:CDS
ACTACGATTATATTCTTGAT+TGG 0.332434 1.3:+71512398 MS.gene33550:CDS
TAGTAGATGACAACCACTTT+AGG 0.334817 1.3:-71510744 None:intergenic
CCTAATAAACTGACAAAGTT+AGG 0.341168 1.3:+71513032 MS.gene33550:CDS
TCCATATACACTGCATTTCC+CGG 0.342023 1.3:-71511540 None:intergenic
AGACAAATATAAGCCCCTTT+TGG 0.346719 1.3:-71510974 None:intergenic
GAACACCAAGGAAGAGTTAC+TGG 0.348403 1.3:+71512925 MS.gene33550:CDS
GATGTTGGGGAATTTGGTTT+TGG 0.350716 1.3:+71511480 MS.gene33550:CDS
CCCGGGAAATGCAGTGTATA+TGG 0.354787 1.3:+71511539 MS.gene33550:CDS
ACATGTAACATATCAAATAT+TGG 0.356378 1.3:+71511246 MS.gene33550:CDS
ACTTGTTGCACCTCACCATT+AGG 0.359348 1.3:-71511579 None:intergenic
CAAATAAAAGAAAGAGCATT+TGG 0.360244 1.3:+71512768 MS.gene33550:CDS
ATATAGGAGAGTGATGTATA+GGG 0.363872 1.3:+71511389 MS.gene33550:CDS
AAGGTCAAAGCAAGTGGCTT+TGG 0.369667 1.3:+71512903 MS.gene33550:CDS
TAAAAGACCATGAAGTGAAA+TGG 0.370388 1.3:+71511277 MS.gene33550:CDS
TAGGTAATCAAGTGGGTTAC+CGG 0.374528 1.3:+71513051 MS.gene33550:CDS
GGGAAGCTGAGGCTAGAATT+AGG 0.374969 1.3:+71512973 MS.gene33550:CDS
TATGCATAGGTGGCTCTAAC+AGG 0.375675 1.3:+71512705 MS.gene33550:intron
TTTATTTCAGTTGGAGATAG+AGG 0.376408 1.3:-71510625 None:intergenic
AAAAGACCATGAAGTGAAAT+GGG 0.385354 1.3:+71511278 MS.gene33550:CDS
GAGATGATGGCTTAGCCGTT+TGG 0.398485 1.3:+71513225 MS.gene33550:CDS
ACTGGAAAATCTTCTTGATA+AGG 0.399267 1.3:-71514266 None:intergenic
ACAACCGGTTACTTCTTTGT+TGG 0.399751 1.3:+71513085 MS.gene33550:CDS
CTACGATTATATTCTTGATT+GGG 0.402457 1.3:+71512399 MS.gene33550:CDS
GTATAAGAAGCTCTTCTTTG+TGG 0.406138 1.3:-71513122 None:intergenic
TTATGTATAATGATAGATAC+AGG 0.412401 1.3:+71511157 MS.gene33550:CDS
CAAAGAGTCAATTGCCAAAA+GGG 0.412911 1.3:+71510960 MS.gene33550:CDS
TGAAGTGAAATGGGGTAATT+GGG 0.414227 1.3:+71511287 MS.gene33550:CDS
TAAAGTGTCATGCTTCTATA+GGG 0.417273 1.3:+71511059 MS.gene33550:CDS
AGTAATGTGATTCCTTCAAT+AGG 0.423251 1.3:-71511108 None:intergenic
CCGGTTGATTAGTGGACAAC+CGG 0.428443 1.3:+71513070 MS.gene33550:CDS
GTGGGTTACCGGTTGATTAG+TGG 0.428815 1.3:+71513062 MS.gene33550:CDS
CCATTCACAATTGGTTGGTA+TGG 0.433670 1.3:+71511012 MS.gene33550:CDS
CCAGTAATGCCAACAGTTCA+GGG 0.434764 1.3:+71514284 MS.gene33550:CDS
CTGGAGGGTTCTATGCTGAT+AGG 0.440718 1.3:+71513195 MS.gene33550:CDS
ATAGAAGCATGACACTTTAA+GGG 0.442635 1.3:-71511055 None:intergenic
TTGGCTTGTCTAGGAATACT+AGG 0.444539 1.3:-71510778 None:intergenic
TTTCCCGGGCAATCAACCTT+GGG 0.447039 1.3:-71511525 None:intergenic
GGATGAATCAGTAAATATTT+GGG 0.448183 1.3:+71511080 MS.gene33550:CDS
AAGAGCATTTGGAACCTTAG+TGG 0.448202 1.3:+71512779 MS.gene33550:CDS
AAAAGCTCAATGAATGTAAA+CGG 0.449384 1.3:-71510901 None:intergenic
TTTATCAAACCTTGATGCTA+TGG 0.452224 1.3:-71510518 None:intergenic
CTAAAATACCATTCTAATGT+AGG 0.459209 1.3:-71511447 None:intergenic
AACTAGACATTGTGCAATCA+TGG 0.462369 1.3:-71510548 None:intergenic
AAAGTGGCAGCATAAAAGTT+GGG 0.464025 1.3:+71512431 MS.gene33550:CDS
GCAACCCAAGGTTGATTGCC+CGG 0.466049 1.3:+71511521 MS.gene33550:CDS
TGAGACATTTGTTCCTTACA+TGG 0.466817 1.3:+71511422 MS.gene33550:CDS
TCTTGTGTACCATTCACAAT+TGG 0.469454 1.3:+71511003 MS.gene33550:CDS
CAACCCAAGGTTGATTGCCC+GGG 0.470906 1.3:+71511522 MS.gene33550:CDS
TCTAGCCTCAGCTTCCCTCT+TGG 0.471207 1.3:-71512967 None:intergenic
CCGGTTGTCCACTAATCAAC+CGG 0.473694 1.3:-71513070 None:intergenic
ATTTCCCGGGCAATCAACCT+TGG 0.477945 1.3:-71511526 None:intergenic
TCAAAGAGTCAATTGCCAAA+AGG 0.480601 1.3:+71510959 MS.gene33550:CDS
TCATCCAACAAAGAAGTAAC+CGG 0.481046 1.3:-71513089 None:intergenic
CTTCTTGATAAGGAACATGA+TGG 0.481769 1.3:-71514256 None:intergenic
TTCAACATCAACAAAATGAT+AGG 0.482896 1.3:-71510701 None:intergenic
ACCGTCCAGTAACTCTTCCT+TGG 0.484188 1.3:-71512930 None:intergenic
ATTTGGGCACGGCCTATTGA+AGG 0.485547 1.3:+71511096 MS.gene33550:CDS
CCTATAATAAGTCAGAAAGA+TGG 0.486412 1.3:+71513171 MS.gene33550:CDS
CATCAATGCAAAGTTGCAAA+AGG 0.489305 1.3:+71512884 MS.gene33550:CDS
GGACTTCTGGTAATGTGGCT+TGG 0.489469 1.3:+71511628 MS.gene33550:CDS
TGGAGAGGCTGATATAACTT+TGG 0.495614 1.3:+71512348 MS.gene33550:CDS
TTGGAGATAGAGGGTCTAAA+GGG 0.500491 1.3:-71510615 None:intergenic
TTAACTATTAACAGCTCAGT+TGG 0.505019 1.3:-71513008 None:intergenic
TTTGGCTCTAACAACTACCT+TGG 0.506905 1.3:-71510797 None:intergenic
AATAAGTCAGAAAGATGGGC+TGG 0.508097 1.3:+71513176 MS.gene33550:CDS
GTACCTTCAGCTTTAGGCAT+AGG 0.508242 1.3:-71511183 None:intergenic
AAAAGTGGCAGCATAAAAGT+TGG 0.511324 1.3:+71512430 MS.gene33550:CDS
CTATAATAAGTCAGAAAGAT+GGG 0.513360 1.3:+71513172 MS.gene33550:CDS
AAGGTAGTTGTTAGAGCCAA+AGG 0.513719 1.3:+71510799 MS.gene33550:CDS
GACAAAGTTAGGTAATCAAG+TGG 0.516354 1.3:+71513043 MS.gene33550:CDS
GTTGGAGATAGAGGGTCTAA+AGG 0.519701 1.3:-71510616 None:intergenic
TGAGAGGACTTCTGGTAATG+TGG 0.521014 1.3:+71511623 MS.gene33550:CDS
GATAGGAGCCGTGGAGATGA+TGG 0.529443 1.3:+71513212 MS.gene33550:CDS
TTAAGTCCACCACTAGCTCA+TGG 0.529687 1.3:-71510828 None:intergenic
AGCTGATAGCTTGCAACCCA+AGG 0.530584 1.3:+71511509 MS.gene33550:CDS
GATTGGGAATTCCTGAAAAG+TGG 0.539523 1.3:+71512415 MS.gene33550:CDS
CTAGTGGTGGACTTAACAAA+AGG 0.541951 1.3:+71510835 MS.gene33550:CDS
CCATACCAACCAATTGTGAA+TGG 0.543660 1.3:-71511012 None:intergenic
TCAAAACCACCCTGAACTGT+TGG 0.547785 1.3:-71514293 None:intergenic
TAAGTCCACCACTAGCTCAT+GGG 0.550349 1.3:-71510827 None:intergenic
AAGTTACCTCTGGCTCCAAA+CGG 0.553158 1.3:-71513240 None:intergenic
GTAGGGTTTAATGCTAGAGC+AGG 0.558166 1.3:+71511318 MS.gene33550:CDS
GATAAAATCTACAAAGGTCA+CGG 0.559746 1.3:+71510871 MS.gene33550:CDS
ACATGGATCCTACATTAGAA+TGG 0.559767 1.3:+71511439 MS.gene33550:CDS
TAGTATTCCTAGACAAGCCA+AGG 0.560332 1.3:+71510780 MS.gene33550:CDS
AGCTGCCAAGAGGGAAGCTG+AGG 0.560924 1.3:+71512962 MS.gene33550:CDS
TCTAATGTAGGATCCATGTA+AGG 0.562823 1.3:-71511435 None:intergenic
GTACTTTATACTCAAAGCAA+TGG 0.566274 1.3:-71514347 None:intergenic
TTGCATTATCATCAATGTCA+AGG 0.566643 1.3:-71512854 None:intergenic
TTATTTCAGTTGGAGATAGA+GGG 0.567066 1.3:-71510624 None:intergenic
AGAGGCTGATATAACTTTGG+TGG 0.568953 1.3:+71512351 MS.gene33550:CDS
TCTACAGATAAGAGATGGAG+AGG 0.570899 1.3:+71512333 MS.gene33550:intron
ATAGTTCAACAATCTTACCT+TGG 0.573038 1.3:+71510661 MS.gene33550:CDS
CCATATACACTGCATTTCCC+GGG 0.575282 1.3:-71511539 None:intergenic
GTGAGGTGCAACAAGTGCCA+AGG 0.576154 1.3:+71511586 MS.gene33550:CDS
ATAGTGCTGTGGCACACAGT+TGG 0.581553 1.3:+71514230 MS.gene33550:CDS
GTGTACCATTCACAATTGGT+TGG 0.582500 1.3:+71511007 MS.gene33550:CDS
AGTCAGAAAGATGGGCTGGA+GGG 0.585305 1.3:+71513180 MS.gene33550:CDS
ACAACTACCTTGGCTTGTCT+AGG 0.585547 1.3:-71510787 None:intergenic
GTGATCATGATAATCAGCTA+TGG 0.588908 1.3:-71512811 None:intergenic
TTCTATGCTGATAGGAGCCG+TGG 0.589255 1.3:+71513203 MS.gene33550:CDS
GGTCAAGATAATATGTTACA+AGG 0.594480 1.3:-71512833 None:intergenic
AAAGAGTCAATTGCCAAAAG+GGG 0.595022 1.3:+71510961 MS.gene33550:CDS
AAAACATGACCATAGCATCA+AGG 0.597001 1.3:+71510509 None:intergenic
GATAGAGGGTCTAAAGGGTG+AGG 0.598787 1.3:-71510610 None:intergenic
TATAGGAGAGTGATGTATAG+GGG 0.599318 1.3:+71511390 MS.gene33550:CDS
TTGCAAAAGGTCAAAGCAAG+TGG 0.608603 1.3:+71512897 MS.gene33550:CDS
GGAAATGCAGTGTATATGGA+TGG 0.610466 1.3:+71511543 MS.gene33550:CDS
AGGTGAAACCCATGAGCTAG+TGG 0.611197 1.3:+71510819 MS.gene33550:CDS
AATAAAAGAAGCTGCCAAGA+GGG 0.611661 1.3:+71512953 MS.gene33550:CDS
GCTCAATGAATGTAAACGGA+GGG 0.614184 1.3:-71510897 None:intergenic
GGTCAGAATGATTGCTACTG+TGG 0.615858 1.3:+71512372 MS.gene33550:CDS
GTACCTATGCCTAAAGCTGA+AGG 0.627064 1.3:+71511180 MS.gene33550:CDS
TAATGTGGCTTGGAGACACA+TGG 0.627138 1.3:+71511638 MS.gene33550:CDS
AAGTGGCAGCATAAAAGTTG+GGG 0.627330 1.3:+71512432 MS.gene33550:CDS
GCTTAGCCGTTTGGAGCCAG+AGG 0.628223 1.3:+71513234 MS.gene33550:CDS
AATCAGTAAATATTTGGGCA+CGG 0.629929 1.3:+71511085 MS.gene33550:CDS
GTCAGAATGATTGCTACTGT+GGG 0.632702 1.3:+71512373 MS.gene33550:CDS
AAGTCAGAAAGATGGGCTGG+AGG 0.632809 1.3:+71513179 MS.gene33550:CDS
GCTGAGGCTAGAATTAGGCT+CGG 0.634518 1.3:+71512978 MS.gene33550:CDS
AGCTCAATGAATGTAAACGG+AGG 0.644081 1.3:-71510898 None:intergenic
TGAGGTGCAACAAGTGCCAA+GGG 0.646795 1.3:+71511587 MS.gene33550:CDS
TATGGCGGGTCCTAATGGTG+AGG 0.651158 1.3:+71511569 MS.gene33550:CDS
TAATAAAAGAAGCTGCCAAG+AGG 0.654704 1.3:+71512952 MS.gene33550:CDS
GTATCAGATAAAATCTACAA+AGG 0.657648 1.3:+71510865 MS.gene33550:CDS
TGAAACCCATGAGCTAGTGG+TGG 0.659649 1.3:+71510822 MS.gene33550:CDS
ACAAAGTTAGGTAATCAAGT+GGG 0.674986 1.3:+71513044 MS.gene33550:CDS
ACCAAGGAAGAGTTACTGGA+CGG 0.675087 1.3:+71512929 MS.gene33550:CDS
CGGCTAAGCCATCATCTCCA+CGG 0.681883 1.3:-71513220 None:intergenic
AAAGACCATGAAGTGAAATG+GGG 0.693342 1.3:+71511279 MS.gene33550:CDS
AGAATACAGACATAGTGCTG+TGG 0.711683 1.3:+71514219 MS.gene33550:CDS
TATGTATAATGATAGATACA+GGG 0.716158 1.3:+71511158 MS.gene33550:CDS
TAATATTAGGAATAGCACCA+AGG 0.730567 1.3:-71510678 None:intergenic
CAAGTGGCTTTGGAACACCA+AGG 0.777920 1.3:+71512913 MS.gene33550:CDS
GTAATGCCAACAGTTCAGGG+TGG 0.794870 1.3:+71514287 MS.gene33550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTAATAAAAAAATT+AGG + chr1.3:71513829-71513848 MS.gene33550:intron 0.0%
!! AGTAATAAAAAAAAAAATTG+AGG - chr1.3:71513960-71513979 None:intergenic 10.0%
!!! ATATATAAATCTACAATTTT+TGG - chr1.3:71513487-71513506 None:intergenic 10.0%
!!! ATCAATATTTTTTTAAATTG+GGG + chr1.3:71513802-71513821 MS.gene33550:intron 10.0%
!!! GTATCAATATTTTTTTAAAT+TGG + chr1.3:71513800-71513819 MS.gene33550:intron 10.0%
!!! TTTTAATAAAAAAATTAGGA+AGG + chr1.3:71513833-71513852 MS.gene33550:intron 10.0%
!! AAAAAAAAAGTCCTATAAAA+AGG + chr1.3:71511923-71511942 MS.gene33550:intron 15.0%
!! AATAATATCTATAGTAAAAG+TGG - chr1.3:71513357-71513376 None:intergenic 15.0%
!! AATTTACTATTCAATTACAA+AGG + chr1.3:71512580-71512599 MS.gene33550:intron 15.0%
!! CTCAAAATTGTATAAATATA+TGG + chr1.3:71513427-71513446 MS.gene33550:intron 15.0%
!! TATAAATGCTCTTATATTTA+GGG + chr1.3:71511959-71511978 MS.gene33550:intron 15.0%
!!! ACTTTTACTATAGATATTAT+TGG + chr1.3:71513356-71513375 MS.gene33550:intron 15.0%
!!! ATAAAACAATTTAGGATATT+AGG - chr1.3:71512688-71512707 None:intergenic 15.0%
!! AAAAAAATATGTTGTCTTCT+TGG + chr1.3:71514101-71514120 MS.gene33550:intron 20.0%
!! AATCATATATTTATAGACGA+AGG - chr1.3:71511719-71511738 None:intergenic 20.0%
!! ACAAAATGATAGGTAATATT+AGG - chr1.3:71510694-71510713 None:intergenic 20.0%
!! ACATGTAACATATCAAATAT+TGG + chr1.3:71511246-71511265 MS.gene33550:CDS 20.0%
!! ACTATAGATATTATTGGAAT+GGG + chr1.3:71513362-71513381 MS.gene33550:intron 20.0%
!! ATCATATATTTATAGACGAA+GGG - chr1.3:71511718-71511737 None:intergenic 20.0%
!! ATGTTAAATTGATTGACAAT+TGG + chr1.3:71511781-71511800 MS.gene33550:intron 20.0%
!! ATTATATGGACTTATTTCAA+TGG + chr1.3:71513662-71513681 MS.gene33550:intron 20.0%
!! CCAAAGTAATATAAATTCTA+AGG - chr1.3:71512521-71512540 None:intergenic 20.0%
!! CCTTAGAATTTATATTACTT+TGG + chr1.3:71512518-71512537 MS.gene33550:intron 20.0%
!! CTATAAATGCTCTTATATTT+AGG + chr1.3:71511958-71511977 MS.gene33550:intron 20.0%
!! GAAAAAAAAAAAGAAATCCA+AGG - chr1.3:71512485-71512504 None:intergenic 20.0%
!! GATAAGTTCTACATATTATA+TGG + chr1.3:71513648-71513667 MS.gene33550:intron 20.0%
!! TAATAAAAAAATTAGGAAGG+AGG + chr1.3:71513836-71513855 MS.gene33550:intron 20.0%
!! TACTATAGATATTATTGGAA+TGG + chr1.3:71513361-71513380 MS.gene33550:intron 20.0%
!! TATGGTAATTCTACTTAATT+AGG + chr1.3:71513994-71514013 MS.gene33550:intron 20.0%
!! TATGTATAATGATAGATACA+GGG + chr1.3:71511158-71511177 MS.gene33550:CDS 20.0%
!! TTATGTATAATGATAGATAC+AGG + chr1.3:71511157-71511176 MS.gene33550:CDS 20.0%
!!! AAAAAAAAAATTGAGGTGTT+AGG - chr1.3:71513953-71513972 None:intergenic 20.0%
!!! AACTTTTGTTTTTACTTTAG+TGG + chr1.3:71513258-71513277 MS.gene33550:intron 20.0%
!!! AATTTTCAATCTTCAAGTAA+AGG + chr1.3:71511207-71511226 MS.gene33550:CDS 20.0%
!!! ACAATTGGTATTATTTTATC+AGG + chr1.3:71511796-71511815 MS.gene33550:intron 20.0%
!!! ATTTTACAAATATTTTGGAG+AGG + chr1.3:71513891-71513910 MS.gene33550:intron 20.0%
!!! ATTTTCAATCTTCAAGTAAA+GGG + chr1.3:71511208-71511227 MS.gene33550:CDS 20.0%
!!! CTAAATATAAGAGCATTTAT+AGG - chr1.3:71511960-71511979 None:intergenic 20.0%
!!! CTTATTTTTGTAAACTCTTT+AGG + chr1.3:71512154-71512173 MS.gene33550:intron 20.0%
!!! GGAAATTTTATTAATTCAAG+TGG + chr1.3:71513857-71513876 MS.gene33550:intron 20.0%
!!! TACTTCAATTTTCATCTTTA+TGG + chr1.3:71513976-71513995 MS.gene33550:intron 20.0%
!!! TCATGTTTTCATAGTAATAT+TGG + chr1.3:71511845-71511864 MS.gene33550:intron 20.0%
!!! TGGTCATTTTACAAATATTT+TGG + chr1.3:71513886-71513905 MS.gene33550:intron 20.0%
!!! TTGAAGCTATTTGAAATATA+TGG + chr1.3:71512005-71512024 MS.gene33550:intron 20.0%
!!! TTGAATTTTGAATATGTAAG+AGG - chr1.3:71510943-71510962 None:intergenic 20.0%
!!! TTTATCATTTTGCTATTGTA+AGG - chr1.3:71512618-71512637 None:intergenic 20.0%
!!! TTTTTCTTGATCCTTTTTAT+AGG - chr1.3:71511937-71511956 None:intergenic 20.0%
! AAAAGCTCAATGAATGTAAA+CGG - chr1.3:71510904-71510923 None:intergenic 25.0%
! ACCTATGCATAAAACAATTT+AGG - chr1.3:71512696-71512715 None:intergenic 25.0%
! ACTACGATTATATTCTTGAT+TGG + chr1.3:71512398-71512417 MS.gene33550:CDS 25.0%
! CATCTTTCTGACTTATTATA+GGG - chr1.3:71513173-71513192 None:intergenic 25.0%
! CTAAAATACCATTCTAATGT+AGG - chr1.3:71511450-71511469 None:intergenic 25.0%
! CTAACTTTGTCAGTTTATTA+GGG - chr1.3:71513034-71513053 None:intergenic 25.0%
! CTACGATTATATTCTTGATT+GGG + chr1.3:71512399-71512418 MS.gene33550:CDS 25.0%
! CTATAATAAGTCAGAAAGAT+GGG + chr1.3:71513172-71513191 MS.gene33550:CDS 25.0%
! GCTTATTATTTAACCAAACA+GGG + chr1.3:71512270-71512289 MS.gene33550:intron 25.0%
! GGATGAATCAGTAAATATTT+GGG + chr1.3:71511080-71511099 MS.gene33550:CDS 25.0%
! GTATCAGATAAAATCTACAA+AGG + chr1.3:71510865-71510884 MS.gene33550:CDS 25.0%
! TCTATAGTAAAAGTGGTATA+CGG - chr1.3:71513350-71513369 None:intergenic 25.0%
! TGCTTATTATTTAACCAAAC+AGG + chr1.3:71512269-71512288 MS.gene33550:intron 25.0%
! TTCAACATCAACAAAATGAT+AGG - chr1.3:71510704-71510723 None:intergenic 25.0%
!! ATCAGGTTTTCTATTTAGAA+GGG + chr1.3:71511813-71511832 MS.gene33550:intron 25.0%
!! CAAATGCTCTTTCTTTTATT+TGG - chr1.3:71512770-71512789 None:intergenic 25.0%
!! CTACATTAGAATGGTATTTT+AGG + chr1.3:71511448-71511467 MS.gene33550:CDS 25.0%
!! TAATATTGGTTACATGTTGT+AGG + chr1.3:71511859-71511878 MS.gene33550:intron 25.0%
!! TATCAGGTTTTCTATTTAGA+AGG + chr1.3:71511812-71511831 MS.gene33550:intron 25.0%
!!! ATACAAAAAAGTATCAAGTG+TGG + chr1.3:71513141-71513160 MS.gene33550:CDS 25.0%
!!! ATGGTATTTTAGGACTTTTA+TGG + chr1.3:71511458-71511477 MS.gene33550:CDS 25.0%
!!! ATTTGGTTTTTATGTGTGTA+TGG - chr1.3:71512753-71512772 None:intergenic 25.0%
!!! CAAATAAAAGAAAGAGCATT+TGG + chr1.3:71512768-71512787 MS.gene33550:CDS 25.0%
!!! CTTGTTTTGTTTATTTCAGT+TGG - chr1.3:71510637-71510656 None:intergenic 25.0%
!!! TAAATTGTTTTATGCATAGG+TGG + chr1.3:71512695-71512714 MS.gene33550:intron 25.0%
!!! TACAAAAAAGTATCAAGTGT+GGG + chr1.3:71513142-71513161 MS.gene33550:CDS 25.0%
!!! TCCTAAATTGTTTTATGCAT+AGG + chr1.3:71512692-71512711 MS.gene33550:intron 25.0%
!!! TTTAGGACATTGTTTTTGTT+TGG - chr1.3:71510730-71510749 None:intergenic 25.0%
!!! TTTGGTTTTTATGTGTGTAT+GGG - chr1.3:71512752-71512771 None:intergenic 25.0%
!!! TTTTTTCTACAGATAAGAGA+TGG + chr1.3:71512328-71512347 MS.gene33550:intron 25.0%
AAAAGACCATGAAGTGAAAT+GGG + chr1.3:71511278-71511297 MS.gene33550:CDS 30.0%
AAATTTGTACCTTCAGCTTT+AGG - chr1.3:71511192-71511211 None:intergenic 30.0%
AACATATATACTAGTCAGGT+AGG - chr1.3:71512546-71512565 None:intergenic 30.0%
AATATAGGAGAGTGATGTAT+AGG + chr1.3:71511388-71511407 MS.gene33550:CDS 30.0%
AATCAACAATCCCACAAAAT+TGG + chr1.3:71511662-71511681 MS.gene33550:CDS 30.0%
AATCAGTAAATATTTGGGCA+CGG + chr1.3:71511085-71511104 MS.gene33550:CDS 30.0%
AATCCAAGGTAAAATAGTTG+TGG - chr1.3:71512471-71512490 None:intergenic 30.0%
ACAAAAACAATGTCCTAAAG+TGG + chr1.3:71510731-71510750 MS.gene33550:CDS 30.0%
ACAAAGTTAGGTAATCAAGT+GGG + chr1.3:71513044-71513063 MS.gene33550:CDS 30.0%
ACTGGAAAATCTTCTTGATA+AGG - chr1.3:71514269-71514288 None:intergenic 30.0%
AGTAATGTGATTCCTTCAAT+AGG - chr1.3:71511111-71511130 None:intergenic 30.0%
ATAGTTCAACAATCTTACCT+TGG + chr1.3:71510661-71510680 MS.gene33550:CDS 30.0%
ATATAGGAGAGTGATGTATA+GGG + chr1.3:71511389-71511408 MS.gene33550:CDS 30.0%
ATTAATTCAAGTGGCAATGA+TGG + chr1.3:71513866-71513885 MS.gene33550:intron 30.0%
CAACAACATATATACTAGTC+AGG - chr1.3:71512550-71512569 None:intergenic 30.0%
CCATCTTTCTGACTTATTAT+AGG - chr1.3:71513174-71513193 None:intergenic 30.0%
CCTAACTTTGTCAGTTTATT+AGG - chr1.3:71513035-71513054 None:intergenic 30.0%
CCTAATAAACTGACAAAGTT+AGG + chr1.3:71513032-71513051 MS.gene33550:CDS 30.0%
CCTATAATAAGTCAGAAAGA+TGG + chr1.3:71513171-71513190 MS.gene33550:CDS 30.0%
CTCTTATATTTAGGGATGAA+GGG + chr1.3:71511967-71511986 MS.gene33550:intron 30.0%
CTTATCTATTAGCATAGCAT+AGG + chr1.3:71512068-71512087 MS.gene33550:intron 30.0%
GATAAAATCTACAAAGGTCA+CGG + chr1.3:71510871-71510890 MS.gene33550:CDS 30.0%
GGGATGAATCAGTAAATATT+TGG + chr1.3:71511079-71511098 MS.gene33550:CDS 30.0%
GGTCAAGATAATATGTTACA+AGG - chr1.3:71512836-71512855 None:intergenic 30.0%
GTAAAAACAAAAGTTACCTC+TGG - chr1.3:71513253-71513272 None:intergenic 30.0%
TAAAAGACCATGAAGTGAAA+TGG + chr1.3:71511277-71511296 MS.gene33550:CDS 30.0%
TAATATTAGGAATAGCACCA+AGG - chr1.3:71510681-71510700 None:intergenic 30.0%
TATTTGCACTTAGAGACATT+TGG + chr1.3:71512030-71512049 MS.gene33550:intron 30.0%
TGTTTGTCCAATTCAAAGTT+CGG - chr1.3:71514184-71514203 None:intergenic 30.0%
TTAACTATTAACAGCTCAGT+TGG - chr1.3:71513011-71513030 None:intergenic 30.0%
TTATTTCAGTTGGAGATAGA+GGG - chr1.3:71510627-71510646 None:intergenic 30.0%
TTGCATTATCATCAATGTCA+AGG - chr1.3:71512857-71512876 None:intergenic 30.0%
TTTATCAAACCTTGATGCTA+TGG - chr1.3:71510521-71510540 None:intergenic 30.0%
TTTATTGCCGAACTTTGAAT+TGG + chr1.3:71514174-71514193 MS.gene33550:intron 30.0%
TTTATTTCAGTTGGAGATAG+AGG - chr1.3:71510628-71510647 None:intergenic 30.0%
! ATAGAAGCATGACACTTTAA+GGG - chr1.3:71511058-71511077 None:intergenic 30.0%
! TAAAGTGTCATGCTTCTATA+GGG + chr1.3:71511059-71511078 MS.gene33550:CDS 30.0%
! TATAGAAGCATGACACTTTA+AGG - chr1.3:71511059-71511078 None:intergenic 30.0%
! TTAAAGTGTCATGCTTCTAT+AGG + chr1.3:71511058-71511077 MS.gene33550:CDS 30.0%
! TTAGGACTTTTATGGATGTT+GGG + chr1.3:71511466-71511485 MS.gene33550:CDS 30.0%
! TTTCACTTCATGGTCTTTTA+TGG - chr1.3:71511277-71511296 None:intergenic 30.0%
!! AGTGTATATGGATGGTTTTA+TGG + chr1.3:71511551-71511570 MS.gene33550:CDS 30.0%
!! TTTAGGACTTTTATGGATGT+TGG + chr1.3:71511465-71511484 MS.gene33550:CDS 30.0%
!!! GGTCTTAAGTTGTTTTTCTT+TGG + chr1.3:71512291-71512310 MS.gene33550:intron 30.0%
AAAAGTGGCAGCATAAAAGT+TGG + chr1.3:71512430-71512449 MS.gene33550:CDS 35.0%
AAACAACTTAAGACCCTGTT+TGG - chr1.3:71512286-71512305 None:intergenic 35.0%
AAAGACCATGAAGTGAAATG+GGG + chr1.3:71511279-71511298 MS.gene33550:CDS 35.0%
AAAGAGTCAATTGCCAAAAG+GGG + chr1.3:71510961-71510980 MS.gene33550:CDS 35.0%
AAAGTGGCAGCATAAAAGTT+GGG + chr1.3:71512431-71512450 MS.gene33550:CDS 35.0%
AACTAGACATTGTGCAATCA+TGG - chr1.3:71510551-71510570 None:intergenic 35.0%
AATAAAAGAAGCTGCCAAGA+GGG + chr1.3:71512953-71512972 MS.gene33550:CDS 35.0%
AATTACCCCATTTCACTTCA+TGG - chr1.3:71511287-71511306 None:intergenic 35.0%
ACAATCCCACAAAATTGGTA+AGG + chr1.3:71511667-71511686 MS.gene33550:intron 35.0%
ACATGGATCCTACATTAGAA+TGG + chr1.3:71511439-71511458 MS.gene33550:CDS 35.0%
ATGAAGTGAAATGGGGTAAT+TGG + chr1.3:71511286-71511305 MS.gene33550:CDS 35.0%
CAAAGAGTCAATTGCCAAAA+GGG + chr1.3:71510960-71510979 MS.gene33550:CDS 35.0%
CATCAATGCAAAGTTGCAAA+AGG + chr1.3:71512884-71512903 MS.gene33550:CDS 35.0%
CTTCTTGATAAGGAACATGA+TGG - chr1.3:71514259-71514278 None:intergenic 35.0%
GAACTTTGAATTGGACAAAC+AGG + chr1.3:71514183-71514202 MS.gene33550:intron 35.0%
GACAAAGTTAGGTAATCAAG+TGG + chr1.3:71513043-71513062 MS.gene33550:CDS 35.0%
GCTCTTATATTTAGGGATGA+AGG + chr1.3:71511966-71511985 MS.gene33550:intron 35.0%
GGTATGGAGAAAAAATCACA+AGG + chr1.3:71511028-71511047 MS.gene33550:CDS 35.0%
GGTGTTAAGATATGATGTAC+GGG - chr1.3:71513329-71513348 None:intergenic 35.0%
GTATAAGAAGCTCTTCTTTG+TGG - chr1.3:71513125-71513144 None:intergenic 35.0%
GTGATCATGATAATCAGCTA+TGG - chr1.3:71512814-71512833 None:intergenic 35.0%
GTTACATGTTGTAGGTTTGT+TGG + chr1.3:71511867-71511886 MS.gene33550:intron 35.0%
TAATAAAAGAAGCTGCCAAG+AGG + chr1.3:71512952-71512971 MS.gene33550:CDS 35.0%
TAGGAACTTACAAGACTTTG+AGG + chr1.3:71512087-71512106 MS.gene33550:intron 35.0%
TAGTAGATGACAACCACTTT+AGG - chr1.3:71510747-71510766 None:intergenic 35.0%
TATAGGAGAGTGATGTATAG+GGG + chr1.3:71511390-71511409 MS.gene33550:CDS 35.0%
TCAAAAATGCAAATAGCCCT+TGG - chr1.3:71511606-71511625 None:intergenic 35.0%
TCAAAGAGTCAATTGCCAAA+AGG + chr1.3:71510959-71510978 MS.gene33550:CDS 35.0%
TCATCCAACAAAGAAGTAAC+CGG - chr1.3:71513092-71513111 None:intergenic 35.0%
TCTAATGTAGGATCCATGTA+AGG - chr1.3:71511438-71511457 None:intergenic 35.0%
TCTTGTGTACCATTCACAAT+TGG + chr1.3:71511003-71511022 MS.gene33550:CDS 35.0%
TGAAGTGAAATGGGGTAATT+GGG + chr1.3:71511287-71511306 MS.gene33550:CDS 35.0%
TGAGACATTTGTTCCTTACA+TGG + chr1.3:71511422-71511441 MS.gene33550:CDS 35.0%
TTGCTTTCGAAAAAGTTAGC+TGG - chr1.3:71514326-71514345 None:intergenic 35.0%
TTTATGGATGTTGGGGAATT+TGG + chr1.3:71511474-71511493 MS.gene33550:CDS 35.0%
! ACAAGACTTTGAGGAGTTTA+TGG + chr1.3:71512096-71512115 MS.gene33550:intron 35.0%
! AGACAAATATAAGCCCCTTT+TGG - chr1.3:71510977-71510996 None:intergenic 35.0%
! ATGACACCTTACCAATTTTG+TGG - chr1.3:71511676-71511695 None:intergenic 35.0%
! CGGTGTTAAGATATGATGTA+CGG - chr1.3:71513330-71513349 None:intergenic 35.0%
! GTAATTGGGCTTTTCATGTA+GGG + chr1.3:71511301-71511320 MS.gene33550:CDS 35.0%
! GTACCACAACTATTTTACCT+TGG + chr1.3:71512465-71512484 MS.gene33550:intron 35.0%
! GTTACATGTAGCGACTATTT+TGG - chr1.3:71511235-71511254 None:intergenic 35.0%
! TAGGACTTTTATGGATGTTG+GGG + chr1.3:71511467-71511486 MS.gene33550:CDS 35.0%
! TATGGTATTTTCTGCCACTA+AGG - chr1.3:71512796-71512815 None:intergenic 35.0%
! TGACACCTTACCAATTTTGT+GGG - chr1.3:71511675-71511694 None:intergenic 35.0%
!!! GTATATGGATGGTTTTATGG+CGG + chr1.3:71511554-71511573 MS.gene33550:CDS 35.0%
!!! TATATGGATGGTTTTATGGC+GGG + chr1.3:71511555-71511574 MS.gene33550:CDS 35.0%
AAGGTAGTTGTTAGAGCCAA+AGG + chr1.3:71510799-71510818 MS.gene33550:CDS 40.0%
AAGTGGCAGCATAAAAGTTG+GGG + chr1.3:71512432-71512451 MS.gene33550:CDS 40.0%
AATAAGTCAGAAAGATGGGC+TGG + chr1.3:71513176-71513195 MS.gene33550:CDS 40.0%
ACAACCGGTTACTTCTTTGT+TGG + chr1.3:71513085-71513104 MS.gene33550:CDS 40.0%
AGAATACAGACATAGTGCTG+TGG + chr1.3:71514219-71514238 MS.gene33550:CDS 40.0%
AGAGGCTGATATAACTTTGG+TGG + chr1.3:71512351-71512370 MS.gene33550:CDS 40.0%
AGCTCAATGAATGTAAACGG+AGG - chr1.3:71510901-71510920 None:intergenic 40.0%
CCATACCAACCAATTGTGAA+TGG - chr1.3:71511015-71511034 None:intergenic 40.0%
GATTGGGAATTCCTGAAAAG+TGG + chr1.3:71512415-71512434 MS.gene33550:CDS 40.0%
GCTCAATGAATGTAAACGGA+GGG - chr1.3:71510900-71510919 None:intergenic 40.0%
GGAAATGCAGTGTATATGGA+TGG + chr1.3:71511543-71511562 MS.gene33550:CDS 40.0%
GTCAGAATGATTGCTACTGT+GGG + chr1.3:71512373-71512392 MS.gene33550:CDS 40.0%
GTGTACCATTCACAATTGGT+TGG + chr1.3:71511007-71511026 MS.gene33550:CDS 40.0%
TAGTATTCCTAGACAAGCCA+AGG + chr1.3:71510780-71510799 MS.gene33550:CDS 40.0%
TCCATATACACTGCATTTCC+CGG - chr1.3:71511543-71511562 None:intergenic 40.0%
TCTACAGATAAGAGATGGAG+AGG + chr1.3:71512333-71512352 MS.gene33550:intron 40.0%
TGGAGAGGCTGATATAACTT+TGG + chr1.3:71512348-71512367 MS.gene33550:CDS 40.0%
TTGCAAAAGGTCAAAGCAAG+TGG + chr1.3:71512897-71512916 MS.gene33550:CDS 40.0%
TTGGAGATAGAGGGTCTAAA+GGG - chr1.3:71510618-71510637 None:intergenic 40.0%
! CCATTCACAATTGGTTGGTA+TGG + chr1.3:71511012-71511031 MS.gene33550:CDS 40.0%
! GGTAATTGGGCTTTTCATGT+AGG + chr1.3:71511300-71511319 MS.gene33550:CDS 40.0%
!! AAGAGCATTTGGAACCTTAG+TGG + chr1.3:71512779-71512798 MS.gene33550:CDS 40.0%
!! CTAGTGGTGGACTTAACAAA+AGG + chr1.3:71510835-71510854 MS.gene33550:CDS 40.0%
!! GATGTTGGGGAATTTGGTTT+TGG + chr1.3:71511480-71511499 MS.gene33550:CDS 40.0%
!! GGGCTATTTGCATTTTTGAG+AGG + chr1.3:71511607-71511626 MS.gene33550:CDS 40.0%
!! TAGGTAATCAAGTGGGTTAC+CGG + chr1.3:71513051-71513070 MS.gene33550:CDS 40.0%
!! TGCATTTTTGAGAGGACTTC+TGG + chr1.3:71511615-71511634 MS.gene33550:CDS 40.0%
!! TTGGCTTGTCTAGGAATACT+AGG - chr1.3:71510781-71510800 None:intergenic 40.0%
!! TTTGGCTCTAACAACTACCT+TGG - chr1.3:71510800-71510819 None:intergenic 40.0%
!!! CTTTTATGCTGCCACTTTTC+AGG - chr1.3:71512429-71512448 None:intergenic 40.0%
AAGGTCAAAGCAAGTGGCTT+TGG + chr1.3:71512903-71512922 MS.gene33550:CDS 45.0%
ACCAAGGAAGAGTTACTGGA+CGG + chr1.3:71512929-71512948 MS.gene33550:CDS 45.0%
CCAGTAATGCCAACAGTTCA+GGG + chr1.3:71514284-71514303 MS.gene33550:CDS 45.0%
CCATATACACTGCATTTCCC+GGG - chr1.3:71511542-71511561 None:intergenic 45.0%
GAACACCAAGGAAGAGTTAC+TGG + chr1.3:71512925-71512944 MS.gene33550:CDS 45.0%
GGTCAGAATGATTGCTACTG+TGG + chr1.3:71512372-71512391 MS.gene33550:CDS 45.0%
GTACCTATGCCTAAAGCTGA+AGG + chr1.3:71511180-71511199 MS.gene33550:CDS 45.0%
GTAGGGTTTAATGCTAGAGC+AGG + chr1.3:71511318-71511337 MS.gene33550:CDS 45.0%
GTTGGAGATAGAGGGTCTAA+AGG - chr1.3:71510619-71510638 None:intergenic 45.0%
TAAGTCCACCACTAGCTCAT+GGG - chr1.3:71510830-71510849 None:intergenic 45.0%
TAGCTCATGGGTTTCACCTT+TGG - chr1.3:71510818-71510837 None:intergenic 45.0%
TCAAAACCACCCTGAACTGT+TGG - chr1.3:71514296-71514315 None:intergenic 45.0%
TCCAGTAATGCCAACAGTTC+AGG + chr1.3:71514283-71514302 MS.gene33550:CDS 45.0%
TTAAGTCCACCACTAGCTCA+TGG - chr1.3:71510831-71510850 None:intergenic 45.0%
! AAGTTACCTCTGGCTCCAAA+CGG - chr1.3:71513243-71513262 None:intergenic 45.0%
! ACTTGTTGCACCTCACCATT+AGG - chr1.3:71511582-71511601 None:intergenic 45.0%
! TAATGTGGCTTGGAGACACA+TGG + chr1.3:71511638-71511657 MS.gene33550:CDS 45.0%
! TGAGAGGACTTCTGGTAATG+TGG + chr1.3:71511623-71511642 MS.gene33550:CDS 45.0%
!! ACAACTACCTTGGCTTGTCT+AGG - chr1.3:71510790-71510809 None:intergenic 45.0%
!! GTACCTTCAGCTTTAGGCAT+AGG - chr1.3:71511186-71511205 None:intergenic 45.0%
!! TATGCATAGGTGGCTCTAAC+AGG + chr1.3:71512705-71512724 MS.gene33550:intron 45.0%
!!! TTCAGGGTGGTTTTGAACTC+AGG + chr1.3:71514300-71514319 MS.gene33550:CDS 45.0%
!! ATAAAAAACAAAAAAAATAT+AGG + chr1.3:71511373-71511392 MS.gene33550:CDS 5.0%
!!! TAAAAAATATTTCTTTAAAA+AGG + chr1.3:71513456-71513475 MS.gene33550:intron 5.0%
!!! TATCAATATTTTTTTAAATT+GGG + chr1.3:71513801-71513820 MS.gene33550:intron 5.0%
ACCGTCCAGTAACTCTTCCT+TGG - chr1.3:71512933-71512952 None:intergenic 50.0%
AGGTGAAACCCATGAGCTAG+TGG + chr1.3:71510819-71510838 MS.gene33550:CDS 50.0%
ATAGTGCTGTGGCACACAGT+TGG + chr1.3:71514230-71514249 MS.gene33550:CDS 50.0%
ATTTCCCGGGCAATCAACCT+TGG - chr1.3:71511529-71511548 None:intergenic 50.0%
ATTTGGGCACGGCCTATTGA+AGG + chr1.3:71511096-71511115 MS.gene33550:CDS 50.0%
CCCGGGAAATGCAGTGTATA+TGG + chr1.3:71511539-71511558 MS.gene33550:CDS 50.0%
CCCTGAACTGTTGGCATTAC+TGG - chr1.3:71514287-71514306 None:intergenic 50.0%
CCGGTTGTCCACTAATCAAC+CGG - chr1.3:71513073-71513092 None:intergenic 50.0%
CTGGAGGGTTCTATGCTGAT+AGG + chr1.3:71513195-71513214 MS.gene33550:CDS 50.0%
GATAGAGGGTCTAAAGGGTG+AGG - chr1.3:71510613-71510632 None:intergenic 50.0%
GCTGAGGCTAGAATTAGGCT+CGG + chr1.3:71512978-71512997 MS.gene33550:CDS 50.0%
GGAGAGGATTCGAACGAACT+CGG + chr1.3:71513907-71513926 MS.gene33550:intron 50.0%
GGGAAGCTGAGGCTAGAATT+AGG + chr1.3:71512973-71512992 MS.gene33550:CDS 50.0%
GTAATGCCAACAGTTCAGGG+TGG + chr1.3:71514287-71514306 MS.gene33550:CDS 50.0%
TGAAACCCATGAGCTAGTGG+TGG + chr1.3:71510822-71510841 MS.gene33550:CDS 50.0%
TGAGGTGCAACAAGTGCCAA+GGG + chr1.3:71511587-71511606 MS.gene33550:CDS 50.0%
TTCTATGCTGATAGGAGCCG+TGG + chr1.3:71513203-71513222 MS.gene33550:CDS 50.0%
TTTCCCGGGCAATCAACCTT+GGG - chr1.3:71511528-71511547 None:intergenic 50.0%
! AGCTGATAGCTTGCAACCCA+AGG + chr1.3:71511509-71511528 MS.gene33550:CDS 50.0%
! CCGGTTGATTAGTGGACAAC+CGG + chr1.3:71513070-71513089 MS.gene33550:CDS 50.0%
! GAGATGATGGCTTAGCCGTT+TGG + chr1.3:71513225-71513244 MS.gene33550:CDS 50.0%
! GGACTTCTGGTAATGTGGCT+TGG + chr1.3:71511628-71511647 MS.gene33550:CDS 50.0%
! GTGGGTTACCGGTTGATTAG+TGG + chr1.3:71513062-71513081 MS.gene33550:CDS 50.0%
!! AAGTCAGAAAGATGGGCTGG+AGG + chr1.3:71513179-71513198 MS.gene33550:CDS 50.0%
!! AGTCAGAAAGATGGGCTGGA+GGG + chr1.3:71513180-71513199 MS.gene33550:CDS 50.0%
!! CAAGTGGCTTTGGAACACCA+AGG + chr1.3:71512913-71512932 MS.gene33550:CDS 50.0%
!!! GGTTTTATGGCGGGTCCTAA+TGG + chr1.3:71511564-71511583 MS.gene33550:CDS 50.0%
CGGCTAAGCCATCATCTCCA+CGG - chr1.3:71513223-71513242 None:intergenic 55.0%
GATAGGAGCCGTGGAGATGA+TGG + chr1.3:71513212-71513231 MS.gene33550:CDS 55.0%
GTGAGGTGCAACAAGTGCCA+AGG + chr1.3:71511586-71511605 MS.gene33550:CDS 55.0%
TCTAGCCTCAGCTTCCCTCT+TGG - chr1.3:71512970-71512989 None:intergenic 55.0%
! CAACCCAAGGTTGATTGCCC+GGG + chr1.3:71511522-71511541 MS.gene33550:CDS 55.0%
! GCAACCCAAGGTTGATTGCC+CGG + chr1.3:71511521-71511540 MS.gene33550:CDS 55.0%
!! TATGGCGGGTCCTAATGGTG+AGG + chr1.3:71511569-71511588 MS.gene33550:CDS 55.0%
AGCTGCCAAGAGGGAAGCTG+AGG + chr1.3:71512962-71512981 MS.gene33550:CDS 60.0%
! GCTTAGCCGTTTGGAGCCAG+AGG + chr1.3:71513234-71513253 MS.gene33550:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 71510514 71514358 71510514 ID=MS.gene33550
chr1.3 mRNA 71510514 71514358 71510514 ID=MS.gene33550.t1;Parent=MS.gene33550
chr1.3 exon 71510514 71511683 71510514 ID=MS.gene33550.t1.exon1;Parent=MS.gene33550.t1
chr1.3 CDS 71510514 71511683 71510514 ID=cds.MS.gene33550.t1;Parent=MS.gene33550.t1
chr1.3 exon 71512340 71512453 71512340 ID=MS.gene33550.t1.exon2;Parent=MS.gene33550.t1
chr1.3 CDS 71512340 71512453 71512340 ID=cds.MS.gene33550.t1;Parent=MS.gene33550.t1
chr1.3 exon 71512714 71513255 71512714 ID=MS.gene33550.t1.exon3;Parent=MS.gene33550.t1
chr1.3 CDS 71512714 71513255 71512714 ID=cds.MS.gene33550.t1;Parent=MS.gene33550.t1
chr1.3 exon 71514205 71514358 71514205 ID=MS.gene33550.t1.exon4;Parent=MS.gene33550.t1
chr1.3 CDS 71514205 71514358 71514205 ID=cds.MS.gene33550.t1;Parent=MS.gene33550.t1
Gene Sequence

>MS.gene33550

ATGACCATAGCATCAAGGTTTGATAAAGCAACAACCATGATTGCACAATGTCTAGTTCTAGCATTTTTTCTTCAATTCAACTTCATTAATAGTTTGCCTCACCCTTTAGACCCTCTATCTCCAACTGAAATAAACAAAACAAGACACATAGTTCAACAATCTTACCTTGGTGCTATTCCTAATATTACCTATCATTTTGTTGATGTTGAAGAACCAAACAAAAACAATGTCCTAAAGTGGTTGTCATCTACTACAAAACAAAAGCCTAGTATTCCTAGACAAGCCAAGGTAGTTGTTAGAGCCAAAGGTGAAACCCATGAGCTAGTGGTGGACTTAACAAAAGGCTCAATTGTATCAGATAAAATCTACAAAGGTCACGGATACCCTCCGTTTACATTCATTGAGCTTTTCAAAGCTAGTAAATTGCCTCTTACATATTCAAAATTCAAAGAGTCAATTGCCAAAAGGGGCTTATATTTGTCTGAAATTTCTTGTGTACCATTCACAATTGGTTGGTATGGAGAAAAAATCACAAGGAGAGCCCTTAAAGTGTCATGCTTCTATAGGGATGAATCAGTAAATATTTGGGCACGGCCTATTGAAGGAATCACATTACTAGTTGATGTTGATTTAATGAAGATTATTATGTATAATGATAGATACAGGGTACCTATGCCTAAAGCTGAAGGTACAAATTTTCAATCTTCAAGTAAAGGGTCCAAAATAGTCGCTACATGTAACATATCAAATATTGGATTTACCATAAAAGACCATGAAGTGAAATGGGGTAATTGGGCTTTTCATGTAGGGTTTAATGCTAGAGCAGGAATGATTATATCAACTGCTTCTATATTTGATGATAAAAAACAAAAAAAATATAGGAGAGTGATGTATAGGGGTCATGTGTCTGAGACATTTGTTCCTTACATGGATCCTACATTAGAATGGTATTTTAGGACTTTTATGGATGTTGGGGAATTTGGTTTTGGACGTTCAGCTGATAGCTTGCAACCCAAGGTTGATTGCCCGGGAAATGCAGTGTATATGGATGGTTTTATGGCGGGTCCTAATGGTGAGGTGCAACAAGTGCCAAGGGCTATTTGCATTTTTGAGAGGACTTCTGGTAATGTGGCTTGGAGACACATGGAAATCAACAATCCCACAAAATTGGTAAGGTGTCATATATTATTTTTGTTATACTCCCTTCGTCTATAAATATATGATTTTATTATTGACAAAAATACGAGAATTAATAAAGTCGATAGTTATGTTAAATTGATTGACAATTGGTATTATTTTATCAGGTTTTCTATTTAGAAGGGAAAATTGATTCATGTTTTCATAGTAATATTGGTTACATGTTGTAGGTTTGTTGGTAAAATAAATAAATAATCTAGTTAAAATTTTGAAAAAAAAAAGTCCTATAAAAAGGATCAAGAAAAACCTATAAATGCTCTTATATTTAGGGATGAAGGGCATTTTCAATTGATGTTGAAGCTATTTGAAATATATGGTCTATTTGCACTTAGAGACATTTGGATTGAAATATTTAAACTTATCTATTAGCATAGCATAGGAACTTACAAGACTTTGAGGAGTTTATGGAATCACTTTTTAACATGTTCATAACTTGTTTTCAACTTATTTTTGTAAACTCTTTAGGATAATTTATAAAACAGTGTATAGCTTATACAAAAACATTTTGACTTTTTTTTTATAAAGAAAATAGTTTATTCATAAATGTTATGCTCTAAGTGCTTATTATTTAACCAAACAGGGTCTTAAGTTGTTTTTCTTTGGACACATTTGATGTGTTTTTTCTACAGATAAGAGATGGAGAGGCTGATATAACTTTGGTGGTCAGAATGATTGCTACTGTGGGTAACTACGATTATATTCTTGATTGGGAATTCCTGAAAAGTGGCAGCATAAAAGTTGGGGTAAAATTCTTGTACCACAACTATTTTACCTTGGATTTCTTTTTTTTTTTCTTTCGTTGAAAGACCTTAGAATTTATATTACTTTGGTTCCTACCTGACTAGTATATATGTTGTTGAGTTATTTTTAATTTACTATTCAATTACAAAGGAATATAATCATTCCTTACAATAGCAAAATGATAAATTAATGTAACATACATTTAGTTTTAAGTCAAACAAAAATGCACTTATCCTAATATCCTAAATTGTTTTATGCATAGGTGGCTCTAACAGGTGTATTAGAAATGAAAGCAGTCCCATACACACATAAAAACCAAATAAAAGAAAGAGCATTTGGAACCTTAGTGGCAGAAAATACCATAGCTGATTATCATGATCACCTTGTAACATATTATCTTGACCTTGACATTGATGATAATGCAAACTCATTCATCAATGCAAAGTTGCAAAAGGTCAAAGCAAGTGGCTTTGGAACACCAAGGAAGAGTTACTGGACGGTAATAAAAGAAGCTGCCAAGAGGGAAGCTGAGGCTAGAATTAGGCTCGGCTTAGAGCCAACTGAGCTGTTAATAGTTAACCCTAATAAACTGACAAAGTTAGGTAATCAAGTGGGTTACCGGTTGATTAGTGGACAACCGGTTACTTCTTTGTTGGATGATGATGATTATCCACAAAGAAGAGCTTCTTATACAAAAAAGTATCAAGTGTGGGTTACTCCCTATAATAAGTCAGAAAGATGGGCTGGAGGGTTCTATGCTGATAGGAGCCGTGGAGATGATGGCTTAGCCGTTTGGAGCCAGAGGTAACTTTTGTTTTTACTTTAGTGGCATTTAAAAAAGTTAGTTGTGTTATTTCGAGTGTTTTGAGTCTTTCCCGTACATCATATCTTAACACCGTATACCACTTTTACTATAGATATTATTGGAATGGGAGAGAGAACAAACATTAGAAGAGAGATGAGCATAATTTCAAACTCAAAATTGTATAAATATATGGTATTTGTAAAAAATATTTCTTTAAAAAGGTCTTGCCAAAAATTGTAGATTTATATATTAATTCTTTTAAAAAAAATAATACAAAATATCACTTTTTATTTTAGATAATTAGTGATTTGTTTTAGATCTACAAATTTTACTCTTACTGAAATTGATTCTTGTAGTACTCATTTTAATCTTTATTTTAAGAGACTAAAATGATAAGTTCTACATATTATATGGACTTATTTCAATGGAATAAATTTTGAAGAGAATGAAACAAAACAATGAGTATAAAAGTAAAAAGTGATATATTATTAAAAATTAAAAATATTTTTATAAAGATTTAAAAAACAAATGATATATTTTTATGTATCAATATTTTTTTAAATTGGGGAATTATTTTTTTAATAAAAAAATTAGGAAGGAGGAAATTTTATTAATTCAAGTGGCAATGATGGTCATTTTACAAATATTTTGGAGAGGATTCGAACGAACTCGGTAAGACTAAGCTCTTACTAACCTAACACCTCAATTTTTTTTTTTATTACTTCAATTTTCATCTTTATGGTAATTCTACTTAATTAGGATATAAAAGAATTTAGTGAAAGTTTGTCTGTATAGCAAAAATACTATACTGTATAATATGTTGTCTTCTATTTGTCAAAAAAAAAAAAAAATATGTTGTCTTCTTGGTCAATATTTTTAATGAAATAAGAAAAATTCAGCTTATTAATCAAATTCTGTTTATTGCCGAACTTTGAATTGGACAAACAGGAACAGAGAAATTGAGAATACAGACATAGTGCTGTGGCACACAGTTGGAATCCATCATGTTCCTTATCAAGAAGATTTTCCAGTAATGCCAACAGTTCAGGGTGGTTTTGAACTCAGGCCAGCTAACTTTTTCGAAAGCAATCCATTGCTTTGA
Protein sequence

>MS.gene33550.t1

MTIASRFDKATTMIAQCLVLAFFLQFNFINSLPHPLDPLSPTEINKTRHIVQQSYLGAIPNITYHFVDVEEPNKNNVLKWLSSTTKQKPSIPRQAKVVVRAKGETHELVVDLTKGSIVSDKIYKGHGYPPFTFIELFKASKLPLTYSKFKESIAKRGLYLSEISCVPFTIGWYGEKITRRALKVSCFYRDESVNIWARPIEGITLLVDVDLMKIIMYNDRYRVPMPKAEGTNFQSSSKGSKIVATCNISNIGFTIKDHEVKWGNWAFHVGFNARAGMIISTASIFDDKKQKKYRRVMYRGHVSETFVPYMDPTLEWYFRTFMDVGEFGFGRSADSLQPKVDCPGNAVYMDGFMAGPNGEVQQVPRAICIFERTSGNVAWRHMEINNPTKLIRDGEADITLVVRMIATVGNYDYILDWEFLKSGSIKVGVALTGVLEMKAVPYTHKNQIKERAFGTLVAENTIADYHDHLVTYYLDLDIDDNANSFINAKLQKVKASGFGTPRKSYWTVIKEAAKREAEARIRLGLEPTELLIVNPNKLTKLGNQVGYRLISGQPVTSLLDDDDYPQRRASYTKKYQVWVTPYNKSERWAGGFYADRSRGDDGLAVWSQRNREIENTDIVLWHTVGIHHVPYQEDFPVMPTVQGGFELRPANFFESNPLL