AlfalfaGEDB | MS.gene33567

M. sativa cultivar XinJiangDaYe / MS.gene33567

KEGG: K08867
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF12202.11

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33567.t1	XP_013469851.1	97.7	709	16	0	1	709	1	709	0.00E+00	1416.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33567.t1	Q9CAV6	51.2	763	253	14	1	708	1	699	1.2e-190	667.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33567.t1	A0A072VPH6	97.7	709	16	0	1	709	1	709	0.0e+00	1416.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050301	MS.gene33567	0.80648	8.06E-50	-1.69E-46
MS.gene050397	MS.gene33567	0.801556	8.52E-49	-1.69E-46
MS.gene05733	MS.gene33567	0.823081	1.68E-53	-1.69E-46
MS.gene05907	MS.gene33567	0.800771	1.23E-48	-1.69E-46
MS.gene059597	MS.gene33567	0.822808	1.94E-53	-1.69E-46
MS.gene059894	MS.gene33567	0.812198	4.78E-51	-1.69E-46
MS.gene061049	MS.gene33567	0.813862	2.06E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33567.t1	MTR_1g103850	97.743	709	16	0	1	709	1	709	0.0	1462
MS.gene33567.t1	MTR_1g081330	57.576	759	255	19	1	709	1	742	0.0	796
MS.gene33567.t1	MTR_7g114680	56.739	742	272	14	1	709	1	726	0.0	780
MS.gene33567.t1	MTR_7g114680	56.485	717	263	14	26	709	12	712	0.0	744
MS.gene33567.t1	MTR_1g081330	54.154	674	242	19	86	709	1	657	0.0	644
MS.gene33567.t1	MTR_3g076650	61.395	430	131	6	11	437	13	410	3.08e-173	508
MS.gene33567.t1	MTR_5g075220	54.588	425	153	7	10	431	13	400	2.66e-157	467
MS.gene33567.t1	MTR_8g027265	48.134	536	258	9	11	541	25	545	7.21e-154	461
MS.gene33567.t1	MTR_3g080960	54.042	433	179	6	8	431	4	425	1.31e-151	454
MS.gene33567.t1	MTR_7g072860	51.069	421	160	4	14	430	18	396	2.13e-148	445

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene33567.t1	AT3G04910	53.010	764	238	21	1	708	1	699	711
MS.gene33567.t1	AT3G04910	51.852	729	230	21	36	708	13	676	655
MS.gene33567.t1	AT5G28080	62.672	509	147	10	1	494	2	482	619
MS.gene33567.t1	AT3G22420	53.055	622	197	12	1	614	72	606	611
MS.gene33567.t1	AT3G22420	53.055	622	197	12	1	614	1	535	610
MS.gene33567.t1	AT3G22420	50.847	649	197	13	1	614	72	633	597
MS.gene33567.t1	AT3G22420	50.847	649	197	13	1	614	1	562	596
MS.gene33567.t1	AT3G22420	50.459	654	197	13	1	614	1	567	593
MS.gene33567.t1	AT3G22420	48.458	681	197	14	1	614	1	594	579
MS.gene33567.t1	AT5G28080	56.385	509	142	11	1	494	2	445	530

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Find 131 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCTGAAGACCTTGAG+AGG	0.577546	1.3:-71167879	MS.gene33567:CDS
AAACATAATTCGGAATCATT+TGG	0.395568	1.3:+71165258	None:intergenic
AAACTTGCACTTGAATCTTC+CGG	0.376328	1.3:+71165923	None:intergenic
AAAGGTAGGAGAAGAGATGA+TGG	0.571802	1.3:-71166309	MS.gene33567:CDS
AAATCGACTGTTCACTGTGT+TGG	0.543815	1.3:-71167217	MS.gene33567:intron
AACACAATAACACATTATTA+AGG	0.400968	1.3:-71165340	MS.gene33567:CDS
AACCAAGGAGAAGTCAAAAT+TGG	0.356242	1.3:-71167268	MS.gene33567:CDS
AACCATAAAGGAGGAGGAAG+AGG	0.452059	1.3:-71165597	MS.gene33567:CDS
AATATCAACCATAAAGGAGG+AGG	0.561005	1.3:-71165603	MS.gene33567:CDS
AATCATCAATTTGGAGAAAA+GGG	0.416028	1.3:+71166553	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAGCATACCTATTATGTA+GGG	-	chr1.3:71166774-71166793	MS.gene33567:intron	30.0%
AATTGAAGATTCTTGGTACA+TGG	+	chr1.3:71167619-71167638	None:intergenic	30.0%
ACAAAATCTATACACTGTCT+TGG	+	chr1.3:71165432-71165451	None:intergenic	30.0%
ACGCTATAATTTCCATTCAT+AGG	+	chr1.3:71167005-71167024	None:intergenic	30.0%
AGATCACATACCAATATGAA+GGG	-	chr1.3:71167689-71167708	MS.gene33567:intron	30.0%
ATACTGTGAAATTCATCTTC+TGG	-	chr1.3:71165607-71165626	MS.gene33567:CDS	30.0%
ATATAAGGCAAGAATTGAGA+TGG	-	chr1.3:71167989-71168008	MS.gene33567:intron	30.0%
ATATCTGCAACAAATGAACA+TGG	+	chr1.3:71165495-71165514	None:intergenic	30.0%
ATTCATTGTCTTGTCTAAAC+AGG	-	chr1.3:71166026-71166045	MS.gene33567:CDS	30.0%
ATTCTGTTACAATCAGTTAG+TGG	-	chr1.3:71166704-71166723	MS.gene33567:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	71165133	71168350	71165133	ID=MS.gene33567
chr1.3	mRNA	71165133	71168350	71165133	ID=MS.gene33567.t1;Parent=MS.gene33567
chr1.3	exon	71168276	71168350	71168276	ID=MS.gene33567.t1.exon1;Parent=MS.gene33567.t1
chr1.3	CDS	71168276	71168350	71168276	ID=cds.MS.gene33567.t1;Parent=MS.gene33567.t1
chr1.3	exon	71168140	71168177	71168140	ID=MS.gene33567.t1.exon2;Parent=MS.gene33567.t1
chr1.3	CDS	71168140	71168177	71168140	ID=cds.MS.gene33567.t1;Parent=MS.gene33567.t1
chr1.3	exon	71167745	71167972	71167745	ID=MS.gene33567.t1.exon3;Parent=MS.gene33567.t1
chr1.3	CDS	71167745	71167972	71167745	ID=cds.MS.gene33567.t1;Parent=MS.gene33567.t1
chr1.3	exon	71167218	71167435	71167218	ID=MS.gene33567.t1.exon4;Parent=MS.gene33567.t1
chr1.3	CDS	71167218	71167435	71167218	ID=cds.MS.gene33567.t1;Parent=MS.gene33567.t1
chr1.3	exon	71166918	71167075	71166918	ID=MS.gene33567.t1.exon5;Parent=MS.gene33567.t1
chr1.3	CDS	71166918	71167075	71166918	ID=cds.MS.gene33567.t1;Parent=MS.gene33567.t1
chr1.3	exon	71166274	71166688	71166274	ID=MS.gene33567.t1.exon6;Parent=MS.gene33567.t1
chr1.3	CDS	71166274	71166688	71166274	ID=cds.MS.gene33567.t1;Parent=MS.gene33567.t1
chr1.3	exon	71165133	71166130	71165133	ID=MS.gene33567.t1.exon7;Parent=MS.gene33567.t1
chr1.3	CDS	71165133	71166130	71165133	ID=cds.MS.gene33567.t1;Parent=MS.gene33567.t1

Gene Sequence

>MS.gene33567

ATGAATGTTGCTGCAAGTGTGGAGGCAGAGGACTCTGAGTTTATAGAAGTTGATCCTACTGGAAGATATGGAAGAGTACATATCTCACTTTTTACTCTTCACCTTTGTTTACTTCTTTAATAAACTCTCATGTTCTTTGTTTTGATTCTGTGTTTTGAATTCCATTTTAACAGTACAATGAAATTCTTGGCAAAGGAGCTTGCAAGACAGTGTATGTATCATATCCTTAATCTCTTGGTTTTCACCTTAGTATTTTCCAAAACAAAATCTTCATTTGTTGCATTTATTAGTATTTTCCAAGACAGTGTATAGATTTTGTGTTCACCAATTATTATTATTATTATTATTTTGACATGAGGCCATGTTCATTTGTTGCAGATATAGAGCATTTGATGAGTATGAAGGAATAGAAGTAGCATGGAATCAAGTAAAGCTTTATGATTTTTTGCAAAATTCTGAAGACCTTGAGAGGTTATACTGTGAAATTCATCTTCTGGAGACATTGAAACACAAGAATATCATGAAGTTCTACACTTCATGGGTTGATACTACCAACAGAAACATTAACTTTGTCACTGAGATGTTCACATCTGGGACTCTAAGACAGTTAGTCTAATCCTCCTTTTTTTTCATCAGTATAATTTTCTTCAATGTTTTAGGAACTGTTTAGATAAACAGTTTAATTAAGCGCTAATCACATGAGTGGTTATATGTAAGATATTTCTATGAAGCCAAATTATTTTCATACAAGTTATAAACTGGTTTCATAAGCTATCCTTGAGAGCTTATGGACATGTCATAAATTGTTTGCATAAGCTCTTTTAATCCAAACAGACTTTAGATTCAAGTTATTTTAGCTCCTTGTTTTTGGCTTGTAATGTGAGTGTGCTCATATTCATTGTCTTGTCTAAACAGGTATAGACTTAAACATAAAAGAGTTAACATCAGAGCAGTTAAGCATTGGTGCAGGCAGATTTTGGAAGGTCTTGTCTATCTCCACAGCCATGACCCTCCTGTGATCCATAGAGATCTCAAGTGTGATAATATTTTCATCAATGGTAACCAAGGAGAAGTCAAAATTGGTGATCTCGGCCTTGCTGCAATTCTCCGCAAATCGACTGTTCACTGTGTTGGTGCGTAAAGCAGAATGAAAGGCTTTAGTTTTAACCCAAGCTATGAATATAACATGTTACCTTTTTTTTCAATTTGTTATCTGCCAAATATATCAGTTTATTTCACTAGATTTCCTTATTTTTCTAACTTGTTTCACTTCAGGAACACCTGAGTTTATGGCACCAGAAGTGTATGAAGAGGATTACAATGAATTGGTTGACATATACTCTTTTGGAATGTGCATTTTGGAGATGGTCACCTTTGAATATCCTTATAGTGAATGCAACCATCCTGCTCAAATATACAAAAAAGTTGTCTCTGTAAGACCCTAAAACATTTTCTTTCATTTCGATTTACTTTTCTCTTTGTATTTTTTCATTTTGATACAAACAAAATAATGTAGCATTTAGACAGCATACAGATGCTGTGGCATCTGAGAGTCTGTTATAGGTTGCTACATTCTGTTACAATCAGTTAGTGGCCATAATTGATTATACATATAATTATGTTAATTTTTGGCTCTAATCCAACAGCATACCTATTATGTAGGGAAAGATGCCAGAATCTCTTTACAAAGTAAATGATCCAGAGGTCAAGCAGTTTGTAGAGAAATGCTTAGCAACTGTATCCCTTAGACTTTCAGCTAAGGAACTCTTAAAGGACCCTTTTCTCCAAATTGATGATTATGAGTATAACTTCAAAGAATTGCAGTATCAAAGAGATTGCTATGAAGTATCACCAACAATTAGACAGCAACCTATGAATGGAAATTATAGCGTTAGAAATGCCTTAATGAGTGTGTACACTGATAATCTTGGTGGTTATCAAGATGATTTTGAAACAAGTGAAATTGATCTCTTTGATTGTGAAGAGGATGATAATTTGGATGAAGTTGACACCTCAATCAAAGGTAGGAGAAGAGATGATGGCATCTTTCTGAGAATCAGAATACCAGATAAGGAAGGTTGGTAATGACATTTCACTTTCTTACTTTCCCATTGAATTTATTTCAGTCTTTGATTATTCCATATTGTGTTGTTTTGTTCTTCTCATTTGGTTTTGTACTTGCTACATAAACCAAATTAACAATTTTATCCCTCTAAATAGGCCGAGTTCGAAATATCTACTTCCCATTCGACACGGAGACTGATACCGCATTGAGTGTTGCATCTGAAATGGTAGCAGAGCTTGATATAACTGACCAAGATGTAACAATTTTAGCAAATATGATAGATAATGAAATTGCAACTTTGGTACCAGGATGGAAAAGGGGACCAATGATAGACGAAATTCCGGAAGATTCAAGTGCAAGTTTCTGCCTTAATTGTGCTGCAAATAATACTTTGGTTGATTATGTATCATCAAATAATCCATGTACCAAGAATCTTCAATTCTTTCATTGTTCTAAAAATGGATGTGCTGCGGTTCACGGCCGATTCGAGGAGATCACATACCAATATGAAGGGTCTGCAAACACTGCTACAGAAGGTGCACCACCAAGTCAATCCAATGGCATTCATTATGCAGATATTTGTGCTCTGCGAGATGAACATGAGTCAAGTCATGAAGGATTGAAAGATATACACTGCGATGAATCTCATGACATATCAAAAATATCAACCATAAAGGAGGAGGAAGAGGAGAGAAGTGTTAATGTGGATGACCAAATTGATGTTAATACCAAAAAGCCTCCTTCTGGCCCTGCAGCATCAGAAAATTTATTACTCTTGGGCTATGAAAATGATATAAGGCAAGAATTGAGATGGCTCAAAGTAAGGTACCAAATGCAGTTAAGAGAGCTTAGAGACCATCAATTAGAGCATGGAAAAGATGGATTTCTGAGGCCACCAGCTAAGGTATCACACAGGAAGATACAACACAATAACACATTATTAAGGTCTATGGCTTATAAGAAGCATTATTCAGTTGATGCTGAGAAATGCAACACTTTGGCTGACCAAATGATTCCGAATTATGTTTATGAAATGAGTCAGCCTAACAATTCTGAGCAAATGGTCACAGCCAAGGATTTCTTTGCAAGAGCTTTGCTTCCAAACTCGCTTCAAAGGGCAACCTCGCTTCCGGTTGATGCAATTGATCTCTAG

Protein sequence

>MS.gene33567.t1

MNVAASVEAEDSEFIEVDPTGRYGRYNEILGKGACKTVYRAFDEYEGIEVAWNQVKLYDFLQNSEDLERLYCEIHLLETLKHKNIMKFYTSWVDTTNRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILEGLVYLHSHDPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAILRKSTVHCVGTPEFMAPEVYEEDYNELVDIYSFGMCILEMVTFEYPYSECNHPAQIYKKVVSGKMPESLYKVNDPEVKQFVEKCLATVSLRLSAKELLKDPFLQIDDYEYNFKELQYQRDCYEVSPTIRQQPMNGNYSVRNALMSVYTDNLGGYQDDFETSEIDLFDCEEDDNLDEVDTSIKGRRRDDGIFLRIRIPDKEGRVRNIYFPFDTETDTALSVASEMVAELDITDQDVTILANMIDNEIATLVPGWKRGPMIDEIPEDSSASFCLNCAANNTLVDYVSSNNPCTKNLQFFHCSKNGCAAVHGRFEEITYQYEGSANTATEGAPPSQSNGIHYADICALRDEHESSHEGLKDIHCDESHDISKISTIKEEEEERSVNVDDQIDVNTKKPPSGPAASENLLLLGYENDIRQELRWLKVRYQMQLRELRDHQLEHGKDGFLRPPAKVSHRKIQHNNTLLRSMAYKKHYSVDAEKCNTLADQMIPNYVYEMSQPNNSEQMVTAKDFFARALLPNSLQRATSLPVDAIDL