AlfalfaGEDB | MS.gene33789

M. sativa cultivar XinJiangDaYe / MS.gene33789

KEGG: K09419
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0110165 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00447.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33789.t1	XP_013457050.1	82.9	211	35	1	1	211	1	210	1.60E-81	312.4

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33789.t1	Q40152	58.6	99	36	1	31	129	37	130	8.8e-28	125.2

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33789.t1	G7ZZ89	82.9	211	35	1	1	211	1	210	1.2e-81	312.4

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene33789.t1	TF	HSF

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050883	MS.gene33789	0.804775	1.84E-49	-1.69E-46
MS.gene052478	MS.gene33789	0.848614	5.48E-60	-1.69E-46
MS.gene053549	MS.gene33789	0.814363	1.60E-51	-1.69E-46

Showing 1 to 3 of 3 entries

Previous1Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33789.t1	MTR_4g088900	96.682	211	6	1	1	211	1	210	2.55e-151	418
MS.gene33789.t1	MTR_5g010680	38.424	203	87	4	30	199	21	218	2.65e-40	141
MS.gene33789.t1	MTR_7g091370	44.886	176	76	4	31	199	20	181	2.72e-40	137
MS.gene33789.t1	MTR_1g100777	37.073	205	102	4	17	203	4	199	2.41e-37	132
MS.gene33789.t1	MTR_1g071360	41.899	179	84	4	31	202	30	195	3.35e-36	130
MS.gene33789.t1	MTR_1g071360	41.899	179	84	4	31	202	27	192	4.16e-36	130
MS.gene33789.t1	MTR_5g089170	39.106	179	96	3	30	200	22	195	7.17e-36	127
MS.gene33789.t1	MTR_3g101870	35.814	215	89	3	30	200	21	230	6.61e-35	127
MS.gene33789.t1	MTR_0020s0020	55.556	99	39	1	31	129	31	124	9.92e-35	126
MS.gene33789.t1	MTR_6g043060	56.122	98	38	1	32	129	21	113	2.35e-34	124

Showing 1 to 10 of 26 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33789.t1	AT5G62020	35.025	197	97	3	30	200	20	211	3.85e-37	131
MS.gene33789.t1	AT4G36990	37.264	212	100	5	22	211	3	203	1.71e-36	129
MS.gene33789.t1	AT2G41690	38.462	195	99	4	21	199	28	217	1.70e-35	125
MS.gene33789.t1	AT4G17750	56.436	101	39	1	30	130	49	144	9.12e-35	129
MS.gene33789.t1	AT1G46264	49.153	118	55	1	30	147	31	143	2.93e-34	125
MS.gene33789.t1	AT4G11660	54.455	101	41	1	30	130	56	151	1.74e-33	123
MS.gene33789.t1	AT4G13980	38.122	181	89	3	34	211	24	184	2.71e-33	124
MS.gene33789.t1	AT5G03720	40.237	169	81	4	22	181	35	192	7.47e-33	122
MS.gene33789.t1	AT5G03720	40.237	169	81	4	22	181	35	192	7.47e-33	122
MS.gene33789.t1	AT1G32330	53.000	100	42	1	30	129	34	128	8.12e-33	123

Showing 1 to 10 of 28 entries

Previous1 2 3Next

Find 41 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGGTTGCAGGCACATGT+TGG	0.597442	4.4:-23836455	MS.gene33789:CDS
AATGCAAATAGCTGAATGCA+AGG	0.596737	4.4:-23836263	MS.gene33789:CDS
AATGGTGCAGGGCACCTTAA+TGG	0.303317	4.4:+23837755	None:intergenic
AATGTGATGGAGCTAAACTT+TGG	0.582577	4.4:-23837824	MS.gene33789:CDS
ACAAGAACCTAAAGAAGGAG+AGG	0.585621	4.4:-23836297	MS.gene33789:CDS
ACATGTTGGTTGAAATCAGT+AGG	0.621186	4.4:-23836441	MS.gene33789:CDS
ACCTATGATTTGGTGGAACA+AGG	0.572095	4.4:-23837722	MS.gene33789:CDS
ACCTTGTTCCACCAAATCAT+AGG	0.508730	4.4:+23837721	None:intergenic
ACTCTAACCTCTCCTTCTTT+AGG	0.266225	4.4:+23836290	None:intergenic
AGAAAATATCATCTAAAAGA+TGG	0.402907	4.4:-23836501	MS.gene33789:CDS

Showing 1 to 10 of 41 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAGTTCTTTGAATTACTTGG+GGG	-	chr4.4:23836856-23836875	MS.gene33789:intron	30.0%
ATAACCGCCAAAATAAAGTT+AGG	-	chr4.4:23837821-23837840	MS.gene33789:CDS	30.0%
ATGGCATTAAAATTGTGTCA+TGG	-	chr4.4:23836337-23836356	MS.gene33789:CDS	30.0%
CAGCATGAGAAATTTCAAAA+GGG	-	chr4.4:23837547-23837566	MS.gene33789:intron	30.0%
GATGGTCCAAATTTCAAATT+TGG	+	chr4.4:23837006-23837025	None:intergenic	30.0%
GGAGTAAAAACTCAAAAACT+TGG	+	chr4.4:23836788-23836807	None:intergenic	30.0%
TCATAGGTCTTCAATAGAAA+TGG	+	chr4.4:23836285-23836304	None:intergenic	30.0%
TCTATTGAAGACCTATGATT+TGG	-	chr4.4:23836287-23836306	MS.gene33789:CDS	30.0%
TTAACGTTATACTGGTACTT+GGG	-	chr4.4:23837254-23837273	MS.gene33789:intron	30.0%
TTTAACGTTATACTGGTACT+TGG	-	chr4.4:23837253-23837272	MS.gene33789:intron	30.0%

Showing 1 to 10 of 94 entries

Previous1 2 3 4 5…10Next

Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	23836186	23837855	23836186	ID=MS.gene33789
chr4.4	mRNA	23836186	23837855	23836186	ID=MS.gene33789.t1;Parent=MS.gene33789
chr4.4	exon	23837565	23837855	23837565	ID=MS.gene33789.t1.exon1;Parent=MS.gene33789.t1
chr4.4	CDS	23837565	23837855	23837565	ID=cds.MS.gene33789.t1;Parent=MS.gene33789.t1
chr4.4	exon	23836186	23836530	23836186	ID=MS.gene33789.t1.exon2;Parent=MS.gene33789.t1
chr4.4	CDS	23836186	23836530	23836186	ID=cds.MS.gene33789.t1;Parent=MS.gene33789.t1

Gene Sequence

>MS.gene33789

ATGAGTGGAAATGTGATGGAGCTAAACTTTGGTTCAATAGACCAATTTTCTTCTGATCAAAATGGAGTGTCCCTTAAGCCATTAAGGTGCCCTGCACCATTTCTATTGAAGACCTATGATTTGGTGGAACAAGGTAGTGAAGGTGAAGAAGATGGCATTAAAATTGTGTCATGGAATGAAGAAGGAAATGGTTTTGTTGTGTGGTCACCAGCTGAATTCTCAGAGCTCACCTTGCCTAAATATTTCAAGCACAACAATTTCTCTAGCTTTATTCGACAACTCAATACATATGTAAGTCCTACCTTGATCGATTTTCTCTCTAAACATCAAAAGAAAAATGTGATCTATATATTGATAAAAAGTTTAAAACACAAATCTCACTTTATTTTGAATGGTTTAATGAATTAGTCCTAATAGAAAGTATAGAACAATGAATTTCCTTTCTGCCACTAATATGAAGGTTAACTATTTACAAATTTATATTGCATTCCTAAAAAAGAAATATTAGTCATTGTTCCTGTTTATTCCTTCAAAAGAATGTTGATATTATTATGTCATACAAATATATATTGATATATTGATTCATCAAGGGTATCTTGCCAAGTTTTTGAGTTTTTACTCCGAATTTTTTGTTTGTTCACTGGTTTCTGTTCTTCCCTAGCTTCCTCAAAAGTTCTTTGAATTACTTGGGGGATTGGATTTTCTCTAGATGACATTCCACGAATTCATGCAGTCAAGACATCGGTTGTTGTTTGATTGAAATCAATTTATTCATATTTTAGTGTATATTTTAATTTTTATTTTAAAAATTAAAAGACCAAATTTGAAATTTGGACCATCCAATTTCGATTCAACAAATGACTCTAACTGTGTGGATTGCTGACCCAGCAGATCCAAATCCATTACTTTGCAGTAGCTCTTTGGAAAAAGAAGTATATGACAATTAAATTAAGAAATCCACCCACGTGCACAAAATGAAGAATTTGGTCAAGTTAGTGACACAAATTATAAGGTCAAATATCAGTTATTTTAACCCAAAGTCAATATCGTCGTACACACATGCTATATTTAACGTTATACTGGTACTTGGGAGCACACTTAAATTGAAAATAATAGTAAAGATAATCTTTGCTTGTTATTCAGTTACATATTCAACAATATTGTCTTTGACTGTTATTTTGTTCATTTTTATTAAAAAAATATGAAGTACAATAGCACATAAATCATAAATGCATATATTAACACAACATGGAATGATATTGTAATGTTTCAAAGTATGATATTTTTGTTTTATGTAATCTCTCACTAATTAATTACTTCAACAGGGGTTTAAGAAAATATCATCTAAAAGATGGGAATTCCAGCATGAGAAATTTCAAAAGGGTTGCAGGCACATGTTGGTTGAAATCAGTAGGAAAAAGTGTGAGCCAAGCGTGTTTCCTCAATATCTCAAGTCTTGTTCAGAGGAAAATGCAGTGACTAATAATTCATCACTTGAAGAAGACAATAGCAATCATGAACTACTCATGGAGGAGAACAAGAACCTAAAGAAGGAGAGGTTAGAGTTGCAAATGCAAATAGCTGAATGCAAGGCACTTGAAATGAAGTTGTTGGAGTGTCTCTCTCAGCATATGGATAACCGCCAAAATAAAGTTAGGAGACTATGTTAA

Protein sequence

>MS.gene33789.t1

MSGNVMELNFGSIDQFSSDQNGVSLKPLRCPAPFLLKTYDLVEQGSEGEEDGIKIVSWNEEGNGFVVWSPAEFSELTLPKYFKHNNFSSFIRQLNTYGFKKISSKRWEFQHEKFQKGCRHMLVEISRKKCEPSVFPQYLKSCSEENAVTNNSSLEEDNSNHELLMEENKNLKKERLELQMQIAECKALEMKLLECLSQHMDNRQNKVRRLC