Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33789.t1 | XP_013457050.1 | 82.9 | 211 | 35 | 1 | 1 | 211 | 1 | 210 | 1.60E-81 | 312.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33789.t1 | Q40152 | 58.6 | 99 | 36 | 1 | 31 | 129 | 37 | 130 | 8.8e-28 | 125.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33789.t1 | G7ZZ89 | 82.9 | 211 | 35 | 1 | 1 | 211 | 1 | 210 | 1.2e-81 | 312.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene33789.t1 | TF | HSF |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050883 | MS.gene33789 | 0.804775 | 1.84E-49 | -1.69E-46 |
MS.gene052478 | MS.gene33789 | 0.848614 | 5.48E-60 | -1.69E-46 |
MS.gene053549 | MS.gene33789 | 0.814363 | 1.60E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33789.t1 | MTR_4g088900 | 96.682 | 211 | 6 | 1 | 1 | 211 | 1 | 210 | 2.55e-151 | 418 |
MS.gene33789.t1 | MTR_5g010680 | 38.424 | 203 | 87 | 4 | 30 | 199 | 21 | 218 | 2.65e-40 | 141 |
MS.gene33789.t1 | MTR_7g091370 | 44.886 | 176 | 76 | 4 | 31 | 199 | 20 | 181 | 2.72e-40 | 137 |
MS.gene33789.t1 | MTR_1g100777 | 37.073 | 205 | 102 | 4 | 17 | 203 | 4 | 199 | 2.41e-37 | 132 |
MS.gene33789.t1 | MTR_1g071360 | 41.899 | 179 | 84 | 4 | 31 | 202 | 30 | 195 | 3.35e-36 | 130 |
MS.gene33789.t1 | MTR_1g071360 | 41.899 | 179 | 84 | 4 | 31 | 202 | 27 | 192 | 4.16e-36 | 130 |
MS.gene33789.t1 | MTR_5g089170 | 39.106 | 179 | 96 | 3 | 30 | 200 | 22 | 195 | 7.17e-36 | 127 |
MS.gene33789.t1 | MTR_3g101870 | 35.814 | 215 | 89 | 3 | 30 | 200 | 21 | 230 | 6.61e-35 | 127 |
MS.gene33789.t1 | MTR_0020s0020 | 55.556 | 99 | 39 | 1 | 31 | 129 | 31 | 124 | 9.92e-35 | 126 |
MS.gene33789.t1 | MTR_6g043060 | 56.122 | 98 | 38 | 1 | 32 | 129 | 21 | 113 | 2.35e-34 | 124 |
MS.gene33789.t1 | MTR_1g102860 | 43.293 | 164 | 83 | 3 | 31 | 192 | 38 | 193 | 6.01e-34 | 124 |
MS.gene33789.t1 | MTR_5g029680 | 55.000 | 100 | 40 | 1 | 30 | 129 | 29 | 123 | 1.89e-33 | 125 |
MS.gene33789.t1 | MTR_5g017470 | 52.000 | 100 | 43 | 1 | 30 | 129 | 6 | 100 | 2.45e-33 | 121 |
MS.gene33789.t1 | MTR_1g061170 | 39.444 | 180 | 97 | 5 | 2 | 175 | 14 | 187 | 1.81e-32 | 122 |
MS.gene33789.t1 | MTR_2g100670 | 40.449 | 178 | 90 | 5 | 31 | 207 | 31 | 193 | 1.83e-32 | 119 |
MS.gene33789.t1 | MTR_7g095680 | 53.535 | 99 | 41 | 1 | 31 | 129 | 47 | 140 | 5.14e-32 | 119 |
MS.gene33789.t1 | MTR_2g100670 | 40.449 | 178 | 90 | 5 | 31 | 207 | 139 | 301 | 7.83e-32 | 119 |
MS.gene33789.t1 | MTR_2g100680 | 52.525 | 99 | 42 | 1 | 31 | 129 | 29 | 122 | 1.39e-31 | 119 |
MS.gene33789.t1 | MTR_4g077970 | 55.102 | 98 | 39 | 1 | 33 | 130 | 12 | 104 | 3.23e-31 | 119 |
MS.gene33789.t1 | MTR_8g083100 | 55.208 | 96 | 38 | 1 | 34 | 129 | 23 | 113 | 7.45e-31 | 118 |
MS.gene33789.t1 | MTR_3g104550 | 38.953 | 172 | 94 | 4 | 31 | 199 | 44 | 207 | 3.73e-30 | 114 |
MS.gene33789.t1 | MTR_8g087540 | 39.333 | 150 | 75 | 3 | 33 | 182 | 12 | 145 | 5.22e-30 | 114 |
MS.gene33789.t1 | MTR_2g017890 | 36.310 | 168 | 93 | 3 | 33 | 200 | 15 | 168 | 1.39e-27 | 107 |
MS.gene33789.t1 | MTR_6g086805 | 50.000 | 98 | 44 | 1 | 32 | 129 | 10 | 102 | 2.06e-27 | 106 |
MS.gene33789.t1 | MTR_8g105780 | 40.385 | 156 | 82 | 5 | 32 | 186 | 21 | 166 | 1.29e-26 | 105 |
MS.gene33789.t1 | MTR_4g045757 | 50.704 | 71 | 29 | 2 | 33 | 102 | 14 | 79 | 5.16e-14 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33789.t1 | AT5G62020 | 35.025 | 197 | 97 | 3 | 30 | 200 | 20 | 211 | 3.85e-37 | 131 |
MS.gene33789.t1 | AT4G36990 | 37.264 | 212 | 100 | 5 | 22 | 211 | 3 | 203 | 1.71e-36 | 129 |
MS.gene33789.t1 | AT2G41690 | 38.462 | 195 | 99 | 4 | 21 | 199 | 28 | 217 | 1.70e-35 | 125 |
MS.gene33789.t1 | AT4G17750 | 56.436 | 101 | 39 | 1 | 30 | 130 | 49 | 144 | 9.12e-35 | 129 |
MS.gene33789.t1 | AT1G46264 | 49.153 | 118 | 55 | 1 | 30 | 147 | 31 | 143 | 2.93e-34 | 125 |
MS.gene33789.t1 | AT4G11660 | 54.455 | 101 | 41 | 1 | 30 | 130 | 56 | 151 | 1.74e-33 | 123 |
MS.gene33789.t1 | AT4G13980 | 38.122 | 181 | 89 | 3 | 34 | 211 | 24 | 184 | 2.71e-33 | 124 |
MS.gene33789.t1 | AT5G03720 | 40.237 | 169 | 81 | 4 | 22 | 181 | 35 | 192 | 7.47e-33 | 122 |
MS.gene33789.t1 | AT5G03720 | 40.237 | 169 | 81 | 4 | 22 | 181 | 35 | 192 | 7.47e-33 | 122 |
MS.gene33789.t1 | AT1G32330 | 53.000 | 100 | 42 | 1 | 30 | 129 | 34 | 128 | 8.12e-33 | 123 |
MS.gene33789.t1 | AT5G43840 | 51.351 | 111 | 49 | 1 | 31 | 141 | 17 | 122 | 8.14e-33 | 119 |
MS.gene33789.t1 | AT1G32330 | 53.000 | 100 | 42 | 1 | 30 | 129 | 34 | 128 | 8.45e-33 | 123 |
MS.gene33789.t1 | AT3G22830 | 53.000 | 100 | 42 | 1 | 31 | 130 | 59 | 153 | 1.48e-32 | 121 |
MS.gene33789.t1 | AT3G63350 | 55.102 | 98 | 39 | 1 | 31 | 128 | 26 | 118 | 7.23e-32 | 117 |
MS.gene33789.t1 | AT5G16820 | 53.398 | 103 | 43 | 1 | 27 | 129 | 21 | 118 | 8.06e-32 | 120 |
MS.gene33789.t1 | AT5G16820 | 53.398 | 103 | 43 | 1 | 27 | 129 | 21 | 118 | 8.06e-32 | 120 |
MS.gene33789.t1 | AT2G26150 | 39.645 | 169 | 85 | 4 | 31 | 193 | 42 | 199 | 2.07e-31 | 117 |
MS.gene33789.t1 | AT2G26150 | 39.645 | 169 | 85 | 4 | 31 | 193 | 42 | 199 | 2.07e-31 | 117 |
MS.gene33789.t1 | AT3G51910 | 48.276 | 116 | 53 | 3 | 30 | 144 | 26 | 135 | 1.40e-30 | 113 |
MS.gene33789.t1 | AT3G02990 | 52.577 | 97 | 41 | 1 | 33 | 129 | 23 | 114 | 7.13e-29 | 112 |
MS.gene33789.t1 | AT3G24520 | 46.296 | 108 | 53 | 1 | 32 | 139 | 16 | 118 | 1.34e-28 | 109 |
MS.gene33789.t1 | AT5G54070 | 51.546 | 97 | 42 | 1 | 32 | 128 | 70 | 161 | 1.94e-28 | 109 |
MS.gene33789.t1 | AT4G18880 | 38.095 | 189 | 95 | 6 | 21 | 204 | 6 | 177 | 1.16e-25 | 102 |
MS.gene33789.t1 | AT5G45710 | 38.764 | 178 | 93 | 5 | 33 | 207 | 13 | 177 | 5.21e-25 | 100 |
MS.gene33789.t1 | AT5G45710 | 38.764 | 178 | 93 | 5 | 33 | 207 | 13 | 177 | 5.21e-25 | 100 |
MS.gene33789.t1 | AT1G67970 | 46.465 | 99 | 47 | 2 | 32 | 129 | 18 | 111 | 4.42e-24 | 98.2 |
MS.gene33789.t1 | AT4G18870 | 38.710 | 93 | 51 | 2 | 33 | 125 | 146 | 232 | 8.96e-15 | 71.6 |
MS.gene33789.t1 | AT4G18870 | 34.862 | 109 | 61 | 4 | 28 | 134 | 8 | 108 | 2.13e-12 | 65.1 |
Find 41 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATAGTCTCCTAACTTTATTT+TGG | 0.243004 | 4.4:+23836191 | None:intergenic |
TTGTTGTGCTTGAAATATTT+AGG | 0.265731 | 4.4:+23837599 | None:intergenic |
ACTCTAACCTCTCCTTCTTT+AGG | 0.266225 | 4.4:+23836290 | None:intergenic |
AATGGTGCAGGGCACCTTAA+TGG | 0.303317 | 4.4:+23837755 | None:intergenic |
TCTATTGAAGACCTATGATT+TGG | 0.323717 | 4.4:-23837732 | MS.gene33789:CDS |
AGAAATTTCAAAAGGGTTGC+AGG | 0.342009 | 4.4:-23836465 | MS.gene33789:CDS |
GAGTGTCCCTTAAGCCATTA+AGG | 0.355422 | 4.4:-23837769 | MS.gene33789:CDS |
CCAGCATGAGAAATTTCAAA+AGG | 0.385876 | 4.4:-23836473 | MS.gene33789:CDS |
CAGGGCACCTTAATGGCTTA+AGG | 0.389744 | 4.4:+23837762 | None:intergenic |
AGAAAATATCATCTAAAAGA+TGG | 0.402907 | 4.4:-23836501 | MS.gene33789:CDS |
TCATAGGTCTTCAATAGAAA+TGG | 0.435601 | 4.4:+23837737 | None:intergenic |
ATAACCGCCAAAATAAAGTT+AGG | 0.439240 | 4.4:-23836198 | MS.gene33789:CDS |
GGCACTTGAAATGAAGTTGT+TGG | 0.448229 | 4.4:-23836242 | MS.gene33789:CDS |
GGAGTGTCTCTCTCAGCATA+TGG | 0.469453 | 4.4:-23836221 | MS.gene33789:CDS |
GAACAAGACTTGAGATATTG+AGG | 0.477443 | 4.4:+23836394 | None:intergenic |
CAGCATGAGAAATTTCAAAA+GGG | 0.481854 | 4.4:-23836472 | MS.gene33789:CDS |
ATTGAAGACCTATGATTTGG+TGG | 0.487727 | 4.4:-23837729 | MS.gene33789:CDS |
GTCTTCAATAGAAATGGTGC+AGG | 0.494487 | 4.4:+23837743 | None:intergenic |
ACCTTGTTCCACCAAATCAT+AGG | 0.508730 | 4.4:+23837721 | None:intergenic |
GAAAATATCATCTAAAAGAT+GGG | 0.510989 | 4.4:-23836500 | MS.gene33789:CDS |
TCATGGAATGAAGAAGGAAA+TGG | 0.522950 | 4.4:-23837665 | MS.gene33789:CDS |
AGGGCACCTTAATGGCTTAA+GGG | 0.526456 | 4.4:+23837763 | None:intergenic |
AGATATTGAGGAAACACGCT+TGG | 0.529081 | 4.4:+23836406 | None:intergenic |
TAGCAATCATGAACTACTCA+TGG | 0.534294 | 4.4:-23836326 | MS.gene33789:CDS |
GTGAGCTCTGAGAATTCAGC+TGG | 0.540598 | 4.4:+23837626 | None:intergenic |
ATTGTGTCATGGAATGAAGA+AGG | 0.551158 | 4.4:-23837671 | MS.gene33789:CDS |
GGAGAACAAGAACCTAAAGA+AGG | 0.564741 | 4.4:-23836302 | MS.gene33789:CDS |
ACCTATGATTTGGTGGAACA+AGG | 0.572095 | 4.4:-23837722 | MS.gene33789:CDS |
GGTAGTGAAGGTGAAGAAGA+TGG | 0.572755 | 4.4:-23837701 | MS.gene33789:CDS |
AATGTGATGGAGCTAAACTT+TGG | 0.582577 | 4.4:-23837824 | MS.gene33789:CDS |
ACAAGAACCTAAAGAAGGAG+AGG | 0.585621 | 4.4:-23836297 | MS.gene33789:CDS |
ATGGCATTAAAATTGTGTCA+TGG | 0.592944 | 4.4:-23837682 | MS.gene33789:CDS |
AATGCAAATAGCTGAATGCA+AGG | 0.596737 | 4.4:-23836263 | MS.gene33789:CDS |
AAAGGGTTGCAGGCACATGT+TGG | 0.597442 | 4.4:-23836455 | MS.gene33789:CDS |
TAACATGAGTGGAAATGTGA+TGG | 0.602953 | 4.4:-23837837 | None:intergenic |
GTGCTTGAAATATTTAGGCA+AGG | 0.616604 | 4.4:+23837604 | None:intergenic |
ACATGTTGGTTGAAATCAGT+AGG | 0.621186 | 4.4:-23836441 | MS.gene33789:CDS |
ATATCTCAAGTCTTGTTCAG+AGG | 0.622749 | 4.4:-23836389 | MS.gene33789:CDS |
TTGGTGGAACAAGGTAGTGA+AGG | 0.622819 | 4.4:-23837713 | MS.gene33789:CDS |
TCTTCAATAGAAATGGTGCA+GGG | 0.670077 | 4.4:+23837744 | None:intergenic |
CAATCATGAACTACTCATGG+AGG | 0.704767 | 4.4:-23836323 | MS.gene33789:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATGACTAATATTTCTTTTTT+AGG | + | chr4.4:23836678-23836697 | None:intergenic | 15.0% |
!! | AAAAGTTCTTTGAATTACTT+GGG | - | chr4.4:23836854-23836873 | MS.gene33789:intron | 20.0% |
!! | ACTAATTAATTACTTCAACA+GGG | - | chr4.4:23837490-23837509 | MS.gene33789:intron | 20.0% |
!! | AGAAAATATCATCTAAAAGA+TGG | - | chr4.4:23837518-23837537 | MS.gene33789:intron | 20.0% |
!! | ATTGTTCTATACTTTCTATT+AGG | + | chr4.4:23836598-23836617 | None:intergenic | 20.0% |
!! | GAAAATATCATCTAAAAGAT+GGG | - | chr4.4:23837519-23837538 | MS.gene33789:intron | 20.0% |
!!! | AAAAGACCAAATTTGAAATT+TGG | - | chr4.4:23836997-23837016 | MS.gene33789:intron | 20.0% |
!!! | AAATCTCACTTTATTTTGAA+TGG | - | chr4.4:23836558-23836577 | MS.gene33789:intron | 20.0% |
!!! | ATTGATATATTGATTCATCA+AGG | - | chr4.4:23836754-23836773 | MS.gene33789:intron | 20.0% |
!!! | TAATATCAACATTCTTTTGA+AGG | + | chr4.4:23836715-23836734 | None:intergenic | 20.0% |
!!! | TTGATATATTGATTCATCAA+GGG | - | chr4.4:23836755-23836774 | MS.gene33789:intron | 20.0% |
! | AAAGTTCTTTGAATTACTTG+GGG | - | chr4.4:23836855-23836874 | MS.gene33789:intron | 25.0% |
! | AGTTAGTGACACAAATTATA+AGG | - | chr4.4:23837176-23837195 | MS.gene33789:intron | 25.0% |
! | ATAGTTAACCTTCATATTAG+TGG | + | chr4.4:23836635-23836654 | None:intergenic | 25.0% |
! | ATGCATATATTAACACAACA+TGG | - | chr4.4:23837415-23837434 | MS.gene33789:intron | 25.0% |
! | CAAAAGTTCTTTGAATTACT+TGG | - | chr4.4:23836853-23836872 | MS.gene33789:intron | 25.0% |
! | CACTAATTAATTACTTCAAC+AGG | - | chr4.4:23837489-23837508 | MS.gene33789:intron | 25.0% |
! | CAGTGAACAAACAAAAAATT+CGG | + | chr4.4:23836809-23836828 | None:intergenic | 25.0% |
! | CTAATTAATTACTTCAACAG+GGG | - | chr4.4:23837491-23837510 | MS.gene33789:intron | 25.0% |
! | TGCTATATTTAACGTTATAC+TGG | - | chr4.4:23837246-23837265 | MS.gene33789:intron | 25.0% |
! | TTGTTGTGCTTGAAATATTT+AGG | + | chr4.4:23836423-23836442 | None:intergenic | 25.0% |
!! | AGTAATTCAAAGAACTTTTG+AGG | + | chr4.4:23836853-23836872 | None:intergenic | 25.0% |
!! | CAATTTTCTTCTGATCAAAA+TGG | - | chr4.4:23836228-23836247 | MS.gene33789:CDS | 25.0% |
!!! | ATAGTCTCCTAACTTTATTT+TGG | + | chr4.4:23837831-23837850 | None:intergenic | 25.0% |
!!! | ATTCTTTTGAAGGAATAAAC+AGG | + | chr4.4:23836705-23836724 | None:intergenic | 25.0% |
!!! | CATTTTGATCAGAAGAAAAT+TGG | + | chr4.4:23836230-23836249 | None:intergenic | 25.0% |
AAGTTCTTTGAATTACTTGG+GGG | - | chr4.4:23836856-23836875 | MS.gene33789:intron | 30.0% | |
ATAACCGCCAAAATAAAGTT+AGG | - | chr4.4:23837821-23837840 | MS.gene33789:CDS | 30.0% | |
ATGGCATTAAAATTGTGTCA+TGG | - | chr4.4:23836337-23836356 | MS.gene33789:CDS | 30.0% | |
CAGCATGAGAAATTTCAAAA+GGG | - | chr4.4:23837547-23837566 | MS.gene33789:intron | 30.0% | |
GATGGTCCAAATTTCAAATT+TGG | + | chr4.4:23837006-23837025 | None:intergenic | 30.0% | |
GGAGTAAAAACTCAAAAACT+TGG | + | chr4.4:23836788-23836807 | None:intergenic | 30.0% | |
TCATAGGTCTTCAATAGAAA+TGG | + | chr4.4:23836285-23836304 | None:intergenic | 30.0% | |
TCTATTGAAGACCTATGATT+TGG | - | chr4.4:23836287-23836306 | MS.gene33789:CDS | 30.0% | |
TTAACGTTATACTGGTACTT+GGG | - | chr4.4:23837254-23837273 | MS.gene33789:intron | 30.0% | |
TTTAACGTTATACTGGTACT+TGG | - | chr4.4:23837253-23837272 | MS.gene33789:intron | 30.0% | |
TTTAGAGAGAAAATCGATCA+AGG | + | chr4.4:23836490-23836509 | None:intergenic | 30.0% | |
TTTGTTGAATCGAAATTGGA+TGG | + | chr4.4:23837024-23837043 | None:intergenic | 30.0% | |
! | GTCATTTGTTGAATCGAAAT+TGG | + | chr4.4:23837028-23837047 | None:intergenic | 30.0% |
!!! | CGAATTTTTTGTTTGTTCAC+TGG | - | chr4.4:23836807-23836826 | MS.gene33789:intron | 30.0% |
AAAGAGCTACTGCAAAGTAA+TGG | + | chr4.4:23837088-23837107 | None:intergenic | 35.0% | |
AACAAATGACTCTAACTGTG+TGG | - | chr4.4:23837038-23837057 | MS.gene33789:intron | 35.0% | |
AATGCAAATAGCTGAATGCA+AGG | - | chr4.4:23837756-23837775 | MS.gene33789:CDS | 35.0% | |
AATTCATGCAGTCAAGACAT+CGG | - | chr4.4:23836908-23836927 | MS.gene33789:intron | 35.0% | |
AGAAATTTCAAAAGGGTTGC+AGG | - | chr4.4:23837554-23837573 | MS.gene33789:intron | 35.0% | |
ATTACTTTGCAGTAGCTCTT+TGG | - | chr4.4:23837087-23837106 | MS.gene33789:intron | 35.0% | |
ATTGTGTCATGGAATGAAGA+AGG | - | chr4.4:23836348-23836367 | MS.gene33789:CDS | 35.0% | |
CCAGCATGAGAAATTTCAAA+AGG | - | chr4.4:23837546-23837565 | MS.gene33789:intron | 35.0% | |
CGTGCACAAAATGAAGAATT+TGG | - | chr4.4:23837150-23837169 | MS.gene33789:intron | 35.0% | |
GAACAAGACTTGAGATATTG+AGG | + | chr4.4:23837628-23837647 | None:intergenic | 35.0% | |
GTGCTTGAAATATTTAGGCA+AGG | + | chr4.4:23836418-23836437 | None:intergenic | 35.0% | |
TAGCAATCATGAACTACTCA+TGG | - | chr4.4:23837693-23837712 | MS.gene33789:CDS | 35.0% | |
TCATGGAATGAAGAAGGAAA+TGG | - | chr4.4:23836354-23836373 | MS.gene33789:CDS | 35.0% | |
TCTTCAATAGAAATGGTGCA+GGG | + | chr4.4:23836278-23836297 | None:intergenic | 35.0% | |
! | AATGTGATGGAGCTAAACTT+TGG | - | chr4.4:23836195-23836214 | MS.gene33789:CDS | 35.0% |
! | AATTCTTCATTTTGTGCACG+TGG | + | chr4.4:23837150-23837169 | None:intergenic | 35.0% |
! | ACATGTTGGTTGAAATCAGT+AGG | - | chr4.4:23837578-23837597 | MS.gene33789:CDS | 35.0% |
! | ATTCTTCATTTTGTGCACGT+GGG | + | chr4.4:23837149-23837168 | None:intergenic | 35.0% |
! | ATTGAAGACCTATGATTTGG+TGG | - | chr4.4:23836290-23836309 | MS.gene33789:CDS | 35.0% |
!! | AAAGAACTTTTGAGGAAGCT+AGG | + | chr4.4:23836845-23836864 | None:intergenic | 35.0% |
!! | AAGAACTTTTGAGGAAGCTA+GGG | + | chr4.4:23836844-23836863 | None:intergenic | 35.0% |
!! | ATATCTCAAGTCTTGTTCAG+AGG | - | chr4.4:23837630-23837649 | MS.gene33789:CDS | 35.0% |
!! | CTACTGCAAAGTAATGGATT+TGG | + | chr4.4:23837082-23837101 | None:intergenic | 35.0% |
!! | TGTACGACGATATTGACTTT+GGG | + | chr4.4:23837222-23837241 | None:intergenic | 35.0% |
!!! | AAGGAAATGGTTTTGTTGTG+TGG | - | chr4.4:23836367-23836386 | MS.gene33789:CDS | 35.0% |
!!! | CCTTTTGAAATTTCTCATGC+TGG | + | chr4.4:23837549-23837568 | None:intergenic | 35.0% |
!!! | GTCTCCTAACTTTATTTTGG+CGG | + | chr4.4:23837828-23837847 | None:intergenic | 35.0% |
ACAAGAACCTAAAGAAGGAG+AGG | - | chr4.4:23837722-23837741 | MS.gene33789:CDS | 40.0% | |
ACCTTGTTCCACCAAATCAT+AGG | + | chr4.4:23836301-23836320 | None:intergenic | 40.0% | |
ACTCTAACCTCTCCTTCTTT+AGG | + | chr4.4:23837732-23837751 | None:intergenic | 40.0% | |
AGATATTGAGGAAACACGCT+TGG | + | chr4.4:23837616-23837635 | None:intergenic | 40.0% | |
CAATCATGAACTACTCATGG+AGG | - | chr4.4:23837696-23837715 | MS.gene33789:CDS | 40.0% | |
CCTTCATATTAGTGGCAGAA+AGG | + | chr4.4:23836627-23836646 | None:intergenic | 40.0% | |
CCTTTCTGCCACTAATATGA+AGG | - | chr4.4:23836624-23836643 | MS.gene33789:intron | 40.0% | |
CTTTGAATTACTTGGGGGAT+TGG | - | chr4.4:23836861-23836880 | MS.gene33789:intron | 40.0% | |
GAGAGAAAATCGATCAAGGT+AGG | + | chr4.4:23836486-23836505 | None:intergenic | 40.0% | |
GGAGAACAAGAACCTAAAGA+AGG | - | chr4.4:23837717-23837736 | MS.gene33789:CDS | 40.0% | |
GGCACTTGAAATGAAGTTGT+TGG | - | chr4.4:23837777-23837796 | MS.gene33789:CDS | 40.0% | |
GTCTTCAATAGAAATGGTGC+AGG | + | chr4.4:23836279-23836298 | None:intergenic | 40.0% | |
!! | ACCTATGATTTGGTGGAACA+AGG | - | chr4.4:23836297-23836316 | MS.gene33789:CDS | 40.0% |
!! | AGTAATGGATTTGGATCTGC+TGG | + | chr4.4:23837073-23837092 | None:intergenic | 40.0% |
!! | GTAATGGATTTGGATCTGCT+GGG | + | chr4.4:23837072-23837091 | None:intergenic | 40.0% |
!! | GTGTACGACGATATTGACTT+TGG | + | chr4.4:23837223-23837242 | None:intergenic | 40.0% |
GAGTGTCCCTTAAGCCATTA+AGG | - | chr4.4:23836250-23836269 | MS.gene33789:CDS | 45.0% | |
GGTAGTGAAGGTGAAGAAGA+TGG | - | chr4.4:23836318-23836337 | MS.gene33789:CDS | 45.0% | |
GTCTTGACTGCATGAATTCG+TGG | + | chr4.4:23836906-23836925 | None:intergenic | 45.0% | |
TTGGTGGAACAAGGTAGTGA+AGG | - | chr4.4:23836306-23836325 | MS.gene33789:CDS | 45.0% | |
! | AGGGCACCTTAATGGCTTAA+GGG | + | chr4.4:23836259-23836278 | None:intergenic | 45.0% |
AAAGGGTTGCAGGCACATGT+TGG | - | chr4.4:23837564-23837583 | MS.gene33789:intron | 50.0% | |
! | AATGGTGCAGGGCACCTTAA+TGG | + | chr4.4:23836267-23836286 | None:intergenic | 50.0% |
! | CAGGGCACCTTAATGGCTTA+AGG | + | chr4.4:23836260-23836279 | None:intergenic | 50.0% |
! | CTTCATTTTGTGCACGTGGG+TGG | + | chr4.4:23837146-23837165 | None:intergenic | 50.0% |
! | GGAGTGTCTCTCTCAGCATA+TGG | - | chr4.4:23837798-23837817 | MS.gene33789:CDS | 50.0% |
!! | GTGAGCTCTGAGAATTCAGC+TGG | + | chr4.4:23836396-23836415 | None:intergenic | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 23836186 | 23837855 | 23836186 | ID=MS.gene33789 |
chr4.4 | mRNA | 23836186 | 23837855 | 23836186 | ID=MS.gene33789.t1;Parent=MS.gene33789 |
chr4.4 | exon | 23837565 | 23837855 | 23837565 | ID=MS.gene33789.t1.exon1;Parent=MS.gene33789.t1 |
chr4.4 | CDS | 23837565 | 23837855 | 23837565 | ID=cds.MS.gene33789.t1;Parent=MS.gene33789.t1 |
chr4.4 | exon | 23836186 | 23836530 | 23836186 | ID=MS.gene33789.t1.exon2;Parent=MS.gene33789.t1 |
chr4.4 | CDS | 23836186 | 23836530 | 23836186 | ID=cds.MS.gene33789.t1;Parent=MS.gene33789.t1 |
Gene Sequence |
Protein sequence |