Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33952.t1 | KEH43565.1 | 98.9 | 943 | 9 | 1 | 1 | 943 | 1 | 942 | 0.00E+00 | 1788.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33952.t1 | F4HWE6 | 62.1 | 959 | 332 | 10 | 2 | 943 | 4 | 948 | 0.0e+00 | 1086.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33952.t1 | A0A072VZS8 | 98.9 | 943 | 9 | 1 | 1 | 943 | 1 | 942 | 0.0e+00 | 1788.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049193 | MS.gene33952 | 0.843637 | 1.24E-58 | -1.69E-46 |
| MS.gene050213 | MS.gene33952 | 0.81204 | 5.18E-51 | -1.69E-46 |
| MS.gene050257 | MS.gene33952 | 0.838358 | 3.02E-57 | -1.69E-46 |
| MS.gene050258 | MS.gene33952 | 0.828554 | 8.43E-55 | -1.69E-46 |
| MS.gene050348 | MS.gene33952 | 0.837852 | 4.07E-57 | -1.69E-46 |
| MS.gene052307 | MS.gene33952 | 0.80772 | 4.40E-50 | -1.69E-46 |
| MS.gene052609 | MS.gene33952 | 0.869543 | 2.86E-66 | -1.69E-46 |
| MS.gene052776 | MS.gene33952 | 0.849377 | 3.36E-60 | -1.69E-46 |
| MS.gene053143 | MS.gene33952 | 0.858317 | 8.95E-63 | -1.69E-46 |
| MS.gene053486 | MS.gene33952 | 0.822195 | 2.70E-53 | -1.69E-46 |
| MS.gene054585 | MS.gene33952 | 0.818027 | 2.43E-52 | -1.69E-46 |
| MS.gene054824 | MS.gene33952 | 0.825206 | 5.32E-54 | -1.69E-46 |
| MS.gene056507 | MS.gene33952 | 0.830823 | 2.36E-55 | -1.69E-46 |
| MS.gene056519 | MS.gene33952 | 0.819578 | 1.08E-52 | -1.69E-46 |
| MS.gene056622 | MS.gene33952 | 0.802191 | 6.31E-49 | -1.69E-46 |
| MS.gene058649 | MS.gene33952 | 0.817545 | 3.12E-52 | -1.69E-46 |
| MS.gene060933 | MS.gene33952 | 0.818724 | 1.69E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33952.t1 | MTR_1g096550 | 97.023 | 974 | 20 | 3 | 1 | 966 | 1 | 973 | 0.0 | 1934 |
| MS.gene33952.t1 | MTR_1g096550 | 99.258 | 943 | 6 | 1 | 1 | 943 | 1 | 942 | 0.0 | 1928 |
| MS.gene33952.t1 | MTR_1g096550 | 96.793 | 842 | 18 | 3 | 133 | 966 | 1 | 841 | 0.0 | 1664 |
| MS.gene33952.t1 | MTR_3g008090 | 88.136 | 177 | 15 | 2 | 225 | 400 | 1 | 172 | 1.78e-100 | 314 |
| MS.gene33952.t1 | MTR_3g008090 | 63.043 | 92 | 10 | 2 | 586 | 676 | 158 | 226 | 3.00e-14 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33952.t1 | AT1G76850 | 64.061 | 985 | 316 | 12 | 1 | 963 | 1 | 969 | 0.0 | 1233 |
| MS.gene33952.t1 | AT1G21170 | 64.583 | 960 | 307 | 10 | 2 | 943 | 4 | 948 | 0.0 | 1225 |
| MS.gene33952.t1 | AT1G21170 | 63.674 | 969 | 310 | 10 | 2 | 943 | 4 | 957 | 0.0 | 1221 |
Find 223 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTTCTGCATTGGCTAAAA+AGG | 0.206585 | 1.4:+75069809 | MS.gene33952:CDS |
| TCCATCATATACCAGCTTTC+TGG | 0.223581 | 1.4:+75073914 | MS.gene33952:CDS |
| AACTTTATTTGCAGAACTAT+TGG | 0.226296 | 1.4:-75074302 | None:intergenic |
| CCTCTTCAAGAACACGTTTC+AGG | 0.240737 | 1.4:-75072160 | None:intergenic |
| GATCTTGTAATTTGTTTCTC+AGG | 0.252991 | 1.4:+75078855 | MS.gene33952:CDS |
| CCCACCTGGCGTTCGAATAA+AGG | 0.262738 | 1.4:-75071692 | None:intergenic |
| GCTTCTCCAGATGGCGTTAA+AGG | 0.264551 | 1.4:+75066870 | MS.gene33952:CDS |
| CATTGCAACCAGAGATTATA+AGG | 0.265405 | 1.4:+75075773 | MS.gene33952:CDS |
| AGTGAGGTTATTGTTGGATT+TGG | 0.275962 | 1.4:+75072962 | MS.gene33952:CDS |
| TTATAAGGATTTATGTTCTA+AGG | 0.283456 | 1.4:+75075788 | MS.gene33952:CDS |
| TTGATTGTACTAAGCAATAT+TGG | 0.288802 | 1.4:+75077405 | MS.gene33952:CDS |
| TCTTCAAGTGTATATCCATT+AGG | 0.299104 | 1.4:-75077324 | None:intergenic |
| ACGAGTTATCTGTTGAATTC+TGG | 0.300147 | 1.4:+75079569 | MS.gene33952:CDS |
| TGCTGGTGCTAAACCTCTCT+TGG | 0.332794 | 1.4:+75080871 | MS.gene33952:CDS |
| ACAGCTGAGCGGAATGTTAA+AGG | 0.335517 | 1.4:-75075919 | None:intergenic |
| CTTCAAGTGTATATCCATTA+GGG | 0.339871 | 1.4:-75077323 | None:intergenic |
| ACAACTCTCCCTTTCGTTTG+AGG | 0.340372 | 1.4:-75067015 | None:intergenic |
| ATTCTTGAATTTCTTGAAGT+TGG | 0.343173 | 1.4:-75077043 | None:intergenic |
| GAAGCAGCTCCTCCGGTTGC+AGG | 0.347304 | 1.4:+75075662 | MS.gene33952:CDS |
| TGGGAAGTCCCAGACCCTTC+AGG | 0.349609 | 1.4:-75071617 | None:intergenic |
| GAAGGTTCCCATTTCCCTAA+TGG | 0.352671 | 1.4:+75077309 | MS.gene33952:CDS |
| GTGTATATCCATTAGGGAAA+TGG | 0.359067 | 1.4:-75077317 | None:intergenic |
| CGAGGGAGGAGGATCGGACT+TGG | 0.367427 | 1.4:+75067151 | MS.gene33952:CDS |
| ATCTAAAGCATGCGCAGCTT+TGG | 0.368698 | 1.4:+75075631 | MS.gene33952:CDS |
| GAAAATGCACCTTCTGATCT+TGG | 0.374744 | 1.4:+75077351 | MS.gene33952:CDS |
| ATGGCATTATTTGAATATAC+AGG | 0.376714 | 1.4:+75073004 | MS.gene33952:CDS |
| GAGGATGACCCTGAAGGGTC+TGG | 0.381558 | 1.4:+75071608 | MS.gene33952:CDS |
| GTGAATATGATTTGGCTGTC+AGG | 0.383310 | 1.4:+75071899 | MS.gene33952:CDS |
| ATATTCAAATAATGCCATAC+TGG | 0.383823 | 1.4:-75072999 | None:intergenic |
| CTTGAATAATATTAAACAAA+TGG | 0.384359 | 1.4:-75071637 | None:intergenic |
| TTCTTGAATCTGCTTCCATC+TGG | 0.388412 | 1.4:-75073684 | None:intergenic |
| TAGCAAGGGTGAATATGATT+TGG | 0.391838 | 1.4:+75071891 | MS.gene33952:CDS |
| AATATCACTGTATGGAGTTA+AGG | 0.393330 | 1.4:+75074396 | MS.gene33952:CDS |
| ATTGCTCCTTTAACGCCATC+TGG | 0.396626 | 1.4:-75066876 | None:intergenic |
| TGTGTTGATCCACTAGGTTT+GGG | 0.397098 | 1.4:+75069873 | MS.gene33952:CDS |
| GCAGAGAAAGCAGTTGGTTA+AGG | 0.397647 | 1.4:+75071309 | MS.gene33952:CDS |
| TCAGCGTCCTTGTCAGTCTT+AGG | 0.398489 | 1.4:-75070083 | None:intergenic |
| TTGCAAAAGTATATTGTTCA+AGG | 0.400874 | 1.4:-75078893 | None:intergenic |
| GCCGGAGGCGCTGAGCGTTT+CGG | 0.405968 | 1.4:-75066982 | None:intergenic |
| TCAGGATGCTTCGATCCTTA+AGG | 0.408044 | 1.4:+75076988 | MS.gene33952:intron |
| TGTTGAATTCTGGCATTCAA+TGG | 0.410122 | 1.4:+75079579 | MS.gene33952:CDS |
| GAATACAGTGAGGTTATTGT+TGG | 0.410142 | 1.4:+75072956 | MS.gene33952:CDS |
| ATGTGTTGATCCACTAGGTT+TGG | 0.412170 | 1.4:+75069872 | MS.gene33952:CDS |
| CATTTGTTTAATATTATTCA+AGG | 0.415540 | 1.4:+75071638 | MS.gene33952:CDS |
| ACCGAAACGCTCAGCGCCTC+CGG | 0.418114 | 1.4:+75066981 | MS.gene33952:CDS |
| ATGTTCTAAGGCTTTGCTCT+TGG | 0.421779 | 1.4:+75075800 | MS.gene33952:CDS |
| ATGACAAATACCGACAAATC+TGG | 0.422105 | 1.4:+75077460 | MS.gene33952:CDS |
| AGCAAACTTTCCACTGAAAA+CGG | 0.428323 | 1.4:-75073950 | None:intergenic |
| TGTATATCCATTAGGGAAAT+GGG | 0.428930 | 1.4:-75077316 | None:intergenic |
| ACATTTGTTATATCTATGTT+CGG | 0.429094 | 1.4:-75072236 | None:intergenic |
| TGCTTTAGATATATCTTCAA+TGG | 0.429528 | 1.4:-75075618 | None:intergenic |
| GTACAATCAATAACTGTTGA+TGG | 0.430845 | 1.4:-75077392 | None:intergenic |
| TGACCTGGAGGCTGGTGCGC+TGG | 0.431040 | 1.4:+75071255 | MS.gene33952:CDS |
| CCCTTTCGTTTGAGGTTTCG+CGG | 0.434697 | 1.4:-75067007 | None:intergenic |
| GTTTGAGGTTTCGCGGTGGC+CGG | 0.435052 | 1.4:-75067000 | None:intergenic |
| GAGCGTATTGGAATTGAACT+TGG | 0.440323 | 1.4:+75077267 | MS.gene33952:CDS |
| TTGAATAATATTAAACAAAT+GGG | 0.441605 | 1.4:-75071636 | None:intergenic |
| TCAGGTAATTTAGAGCGTAT+TGG | 0.444817 | 1.4:+75077255 | MS.gene33952:intron |
| TCTCATTCAGTAGATCTAAC+TGG | 0.446879 | 1.4:+75073835 | MS.gene33952:CDS |
| AGCCAGAGTCGGACCCAGTA+TGG | 0.449828 | 1.4:+75072985 | MS.gene33952:CDS |
| ACATAAATCCTTATAATCTC+TGG | 0.450739 | 1.4:-75075781 | None:intergenic |
| GTTGAATTCTGGCATTCAAT+GGG | 0.457990 | 1.4:+75079580 | MS.gene33952:CDS |
| TGGAGTGCTGCCAGATTTGT+CGG | 0.466012 | 1.4:-75077470 | None:intergenic |
| GCGTTCGAATAAAGGCTTCA+AGG | 0.466972 | 1.4:-75071684 | None:intergenic |
| AGGTGGATGGTCTAAGAGGA+AGG | 0.468303 | 1.4:+75073863 | MS.gene33952:CDS |
| TCTTTGACAGCTTGCTCGTA+GGG | 0.470249 | 1.4:+75069716 | MS.gene33952:intron |
| TGAGGATAATGTTAAAGATC+AGG | 0.473475 | 1.4:+75067089 | MS.gene33952:CDS |
| CTTAGATCACTGGATACAAA+TGG | 0.474934 | 1.4:+75080971 | MS.gene33952:CDS |
| GGGAAGTCCCAGACCCTTCA+GGG | 0.475703 | 1.4:-75071616 | None:intergenic |
| TAATACAAGTGCTGCTGACC+TGG | 0.477555 | 1.4:+75071240 | MS.gene33952:CDS |
| CTCCGGCGAGGGAGGAGGAT+CGG | 0.483522 | 1.4:+75067145 | MS.gene33952:CDS |
| TGGAAGAACTCCGGCGAGGG+AGG | 0.484878 | 1.4:+75067137 | MS.gene33952:CDS |
| GAAGAGGTGGATGGTCTAAG+AGG | 0.486145 | 1.4:+75073859 | MS.gene33952:CDS |
| AGGATGACCCTGAAGGGTCT+GGG | 0.487794 | 1.4:+75071609 | MS.gene33952:CDS |
| CTCGTAGGGTTCGTGAAATG+AGG | 0.487800 | 1.4:+75069730 | MS.gene33952:CDS |
| ATCTTGTAATTTGTTTCTCA+GGG | 0.488409 | 1.4:+75078856 | MS.gene33952:CDS |
| GCGTAACGAGTTGCATGAAA+AGG | 0.489136 | 1.4:+75073649 | MS.gene33952:CDS |
| AGTGCTGCTGACCTGGAGGC+TGG | 0.492005 | 1.4:+75071247 | MS.gene33952:CDS |
| AATGAAGGAAGCAGCTCCTC+CGG | 0.493395 | 1.4:+75075655 | MS.gene33952:CDS |
| TGCCATACTGGGTCCGACTC+TGG | 0.493611 | 1.4:-75072987 | None:intergenic |
| GTCAAAGTTAAGACGAATTG+AGG | 0.495174 | 1.4:+75071589 | MS.gene33952:CDS |
| GACAAATCTGGCAGCACTCC+AGG | 0.495336 | 1.4:+75077472 | MS.gene33952:CDS |
| ATTAGACCACGGGGCCAGAA+TGG | 0.496458 | 1.4:+75073619 | MS.gene33952:CDS |
| ATGCAAAATTGTTCTTATCA+CGG | 0.498458 | 1.4:+75071209 | MS.gene33952:CDS |
| AAGCCAGCGCACCAGCCTCC+AGG | 0.501540 | 1.4:-75071258 | None:intergenic |
| TACAATCAATAACTGTTGAT+GGG | 0.504051 | 1.4:-75077391 | None:intergenic |
| GTCCGATCCTCCTCCCTCGC+CGG | 0.505168 | 1.4:-75067147 | None:intergenic |
| ACTATTGGAATTTGAATCTG+TGG | 0.506633 | 1.4:-75074287 | None:intergenic |
| GGCAGGTAAGAGATTGCATA+TGG | 0.507024 | 1.4:-75075898 | None:intergenic |
| TGCAGCACAATATCACTGTA+TGG | 0.507995 | 1.4:+75074388 | MS.gene33952:CDS |
| CTAGGTTCTCACTTTAACTG+CGG | 0.509381 | 1.4:-75079612 | None:intergenic |
| AAGAACTCCGGCGAGGGAGG+AGG | 0.509737 | 1.4:+75067140 | MS.gene33952:CDS |
| TCCAGAAAGCTGGTATATGA+TGG | 0.509908 | 1.4:-75073915 | None:intergenic |
| ATGCTGCCACGGATAGTACT+TGG | 0.513356 | 1.4:-75071868 | None:intergenic |
| TTCTTTGACAGCTTGCTCGT+AGG | 0.517337 | 1.4:+75069715 | MS.gene33952:intron |
| TAAGTTTAAGAAAACGAACC+CGG | 0.520682 | 1.4:+75081262 | MS.gene33952:CDS |
| TTTCTCAGGGCTCGAAGAGA+AGG | 0.521113 | 1.4:+75078869 | MS.gene33952:CDS |
| CCTCTCTTGGATAAAACACT+TGG | 0.521773 | 1.4:+75080884 | MS.gene33952:CDS |
| TCAACATACCAGCAAAATCC+AGG | 0.522820 | 1.4:-75077094 | None:intergenic |
| TAGGTTCTCACTTTAACTGC+GGG | 0.523038 | 1.4:-75079611 | None:intergenic |
| CCTGAAACGTGTTCTTGAAG+AGG | 0.525268 | 1.4:+75072160 | MS.gene33952:CDS |
| GGAACCTCTGTAGCATCCCT+TGG | 0.525564 | 1.4:-75071828 | None:intergenic |
| GAGTGGAAGAACTCCGGCGA+GGG | 0.526418 | 1.4:+75067134 | MS.gene33952:CDS |
| AGATAATTGATACCTGCAAC+CGG | 0.526500 | 1.4:-75075674 | None:intergenic |
| TGATTACAGCGGTCAATCTA+CGG | 0.528635 | 1.4:-75073891 | None:intergenic |
| ATGCGCAGCTTTGGAAATGA+AGG | 0.534081 | 1.4:+75075640 | MS.gene33952:CDS |
| AAGTACAGATCTTAGATCAC+TGG | 0.535206 | 1.4:+75080961 | MS.gene33952:CDS |
| TGAGGTTTCGCGGTGGCCGG+AGG | 0.536535 | 1.4:-75066997 | None:intergenic |
| CACCCTTGCTAATGCTGCCA+CGG | 0.538730 | 1.4:-75071879 | None:intergenic |
| GAGGGAGGAGGATCGGACTT+GGG | 0.538835 | 1.4:+75067152 | MS.gene33952:CDS |
| CCGCGAAACCTCAAACGAAA+GGG | 0.540947 | 1.4:+75067007 | MS.gene33952:CDS |
| ATGAGACTGGACCGCAGGAT+AGG | 0.543692 | 1.4:-75073818 | None:intergenic |
| TTATTGTTTCAATTCTTGAA+AGG | 0.545710 | 1.4:+75075866 | MS.gene33952:CDS |
| AATTATTACCTCTGCATGAA+CGG | 0.546306 | 1.4:-75079800 | None:intergenic |
| GAGGAGGATCGGACTTGGGA+TGG | 0.549780 | 1.4:+75067156 | MS.gene33952:CDS |
| AGCAGTGTACATTAGACCAC+GGG | 0.556012 | 1.4:+75073609 | MS.gene33952:CDS |
| TTAGATCTACTGAATGAGAC+TGG | 0.557803 | 1.4:-75073831 | None:intergenic |
| GAAGCCTTTATTCGAACGCC+AGG | 0.558193 | 1.4:+75071688 | MS.gene33952:CDS |
| TGAATATGATTTGGCTGTCA+GGG | 0.558997 | 1.4:+75071900 | MS.gene33952:CDS |
| AGCGTATTGGAATTGAACTT+GGG | 0.559889 | 1.4:+75077268 | MS.gene33952:CDS |
| AATGCACCTTCTGATCTTGG+AGG | 0.560054 | 1.4:+75077354 | MS.gene33952:CDS |
| GCACCTTCTGATCTTGGAGG+AGG | 0.561034 | 1.4:+75077357 | MS.gene33952:CDS |
| TGGCATCACTCATGTAGGAC+CGG | 0.561726 | 1.4:-75075598 | None:intergenic |
| GGCTGTCAGGGAGTACAAGA+AGG | 0.563980 | 1.4:+75071912 | MS.gene33952:CDS |
| AGTGCAACCTTCCAGAAAGC+TGG | 0.564155 | 1.4:-75073925 | None:intergenic |
| GGTTGAACGTAGTTAGCGAC+GGG | 0.564760 | 1.4:-75066946 | None:intergenic |
| ACACTTGGCATTCTCGTGGA+AGG | 0.565824 | 1.4:+75080899 | MS.gene33952:CDS |
| TCGTCGAAGAATCGAGGGAG+TGG | 0.566173 | 1.4:+75067117 | MS.gene33952:CDS |
| ACCGCGAAACCTCAAACGAA+AGG | 0.566816 | 1.4:+75067006 | MS.gene33952:CDS |
| AGGCTCTTTCTGATGCCAGA+TGG | 0.567609 | 1.4:+75073669 | MS.gene33952:CDS |
| CTCAGCTGTATCTTCAGCAA+TGG | 0.568432 | 1.4:+75075933 | MS.gene33952:CDS |
| TAGAGGAATCAAATGTCCTC+CGG | 0.571367 | 1.4:+75075579 | MS.gene33952:CDS |
| TATCCGTGGCAGCATTAGCA+AGG | 0.572993 | 1.4:+75071876 | MS.gene33952:CDS |
| AGGTGTCGAAGGATGTCTCA+TGG | 0.575149 | 1.4:+75075842 | MS.gene33952:CDS |
| ACAGTCATTCCCTCGTGGCA+TGG | 0.576315 | 1.4:+75069848 | MS.gene33952:CDS |
| TAGTATTTCTAGCGGTGATG+AGG | 0.576767 | 1.4:+75067071 | MS.gene33952:CDS |
| AGATCTAACTGGTGAAGAGG+TGG | 0.577494 | 1.4:+75073846 | MS.gene33952:CDS |
| TATTCAAGGAGTTAGTTCGC+AGG | 0.578647 | 1.4:+75071652 | MS.gene33952:CDS |
| TGAAGACGAGCTTCTCCAGA+TGG | 0.579001 | 1.4:+75066861 | MS.gene33952:CDS |
| TTTCAGTGGAAAGTTTGCTA+AGG | 0.579251 | 1.4:+75073954 | MS.gene33952:CDS |
| CTGAGCGGAATGTTAAAGGC+AGG | 0.579566 | 1.4:-75075915 | None:intergenic |
| TAACATATTTCATGATCTAG+AGG | 0.579770 | 1.4:+75075562 | MS.gene33952:CDS |
| GTTGGATTTGGAGCCAGAGT+CGG | 0.580175 | 1.4:+75072974 | MS.gene33952:CDS |
| CAGTAGGTTTATACATGAGA+GGG | 0.581536 | 1.4:-75071952 | None:intergenic |
| TACTGAGCAGAGAAAGCAGT+TGG | 0.581539 | 1.4:+75071303 | MS.gene33952:CDS |
| CGAATTGAGGATGACCCTGA+AGG | 0.581739 | 1.4:+75071602 | MS.gene33952:CDS |
| CGTTGCAGCAGATCTGATCA+AGG | 0.582698 | 1.4:-75079549 | None:intergenic |
| GGATCGGACTTGGGATGGTG+AGG | 0.584375 | 1.4:+75067161 | MS.gene33952:CDS |
| AGTAGATCTAACTGGTGAAG+AGG | 0.584520 | 1.4:+75073843 | MS.gene33952:CDS |
| GAGCGTTTCGGTTGAAACGA+CGG | 0.586927 | 1.4:-75066970 | None:intergenic |
| TATTCAAATAATGCCATACT+GGG | 0.589618 | 1.4:-75072998 | None:intergenic |
| AGGAGAACTGTCTGAAGACT+CGG | 0.593578 | 1.4:-75070063 | None:intergenic |
| TTGGTAGGTTGAAAAGTGTA+CGG | 0.593735 | 1.4:-75071849 | None:intergenic |
| ATCAGTTGAAGAGGTGTCGA+AGG | 0.598476 | 1.4:+75075831 | MS.gene33952:CDS |
| AATACTAAGCATCTCCACTT+CGG | 0.599165 | 1.4:-75067055 | None:intergenic |
| GGAAACAAGGACGGCACCTG+TGG | 0.601069 | 1.4:+75069752 | MS.gene33952:CDS |
| TCATTGCGGAAACTTCATCA+AGG | 0.604122 | 1.4:-75074363 | None:intergenic |
| TTCAATGGCATCACTCATGT+AGG | 0.604601 | 1.4:-75075603 | None:intergenic |
| CTGTCCAAGGGATGCTACAG+AGG | 0.607097 | 1.4:+75071824 | MS.gene33952:CDS |
| ACAGTAGGTTTATACATGAG+AGG | 0.607437 | 1.4:-75071953 | None:intergenic |
| CTATTGGAATTTGAATCTGT+GGG | 0.607795 | 1.4:-75074286 | None:intergenic |
| AGTAGAGTTGCTGCACACAT+TGG | 0.607889 | 1.4:+75079774 | MS.gene33952:CDS |
| CATTGCGGAAACTTCATCAA+GGG | 0.607952 | 1.4:-75074362 | None:intergenic |
| TCATATACCAGCTTTCTGGA+AGG | 0.610847 | 1.4:+75073918 | MS.gene33952:CDS |
| AGAGGGAAGAGCAATTGACT+TGG | 0.611105 | 1.4:-75071935 | None:intergenic |
| CAAGTCCATACCGTCGATTG+TGG | 0.611201 | 1.4:-75071362 | None:intergenic |
| TAAAACACTTGGCATTCTCG+TGG | 0.611261 | 1.4:+75080895 | MS.gene33952:CDS |
| ACGCCTCCTCCAAGATCAGA+AGG | 0.612055 | 1.4:-75077360 | None:intergenic |
| TCGTAGGGTTCGTGAAATGA+GGG | 0.612594 | 1.4:+75069731 | MS.gene33952:CDS |
| GGTGTCGAAGGATGTCTCAT+GGG | 0.613077 | 1.4:+75075843 | MS.gene33952:CDS |
| GAACTTTACCCCAAACCTAG+TGG | 0.615864 | 1.4:-75069882 | None:intergenic |
| ACGAGGGAATGACTGTAAGT+AGG | 0.616245 | 1.4:-75069841 | None:intergenic |
| GTTACATCGTCGAAGAATCG+AGG | 0.616508 | 1.4:+75067111 | MS.gene33952:CDS |
| ATTGGTAGCCGTTCATGCAG+AGG | 0.617691 | 1.4:+75079792 | MS.gene33952:CDS |
| TCGAGGGAGTGGAAGAACTC+CGG | 0.618008 | 1.4:+75067128 | MS.gene33952:CDS |
| GATGCGAGCATCAGTTGAAG+AGG | 0.619132 | 1.4:+75075822 | MS.gene33952:CDS |
| GAATTGAGGATGACCCTGAA+GGG | 0.619638 | 1.4:+75071603 | MS.gene33952:CDS |
| ACTGAATGAGACTGGACCGC+AGG | 0.620192 | 1.4:-75073823 | None:intergenic |
| CAACATAGCTCACACAGAGA+AGG | 0.621313 | 1.4:+75077291 | MS.gene33952:CDS |
| ACAATCAATAACTGTTGATG+GGG | 0.622342 | 1.4:-75077390 | None:intergenic |
| GTGTTGATCCACTAGGTTTG+GGG | 0.623025 | 1.4:+75069874 | MS.gene33952:CDS |
| TTCGTGAAATGAGGGAAACA+AGG | 0.623993 | 1.4:+75069739 | MS.gene33952:CDS |
| ATGGTGAGGAGCCTAGTCGT+TGG | 0.625615 | 1.4:+75067175 | MS.gene33952:CDS |
| CGGTTGAACGTAGTTAGCGA+CGG | 0.626399 | 1.4:-75066947 | None:intergenic |
| TCACAACGAGATCTCAACTA+CGG | 0.630699 | 1.4:+75066898 | MS.gene33952:CDS |
| CTAACTGGTGAAGAGGTGGA+TGG | 0.633022 | 1.4:+75073850 | MS.gene33952:CDS |
| TCAACATGCTTCCAACGACT+AGG | 0.633271 | 1.4:-75067186 | None:intergenic |
| TGAAATGAGGGAAACAAGGA+CGG | 0.634069 | 1.4:+75069743 | MS.gene33952:CDS |
| TGATGACGATGATTCCGAAG+TGG | 0.634924 | 1.4:+75067041 | MS.gene33952:CDS |
| GTATTTCTTTAGATTCAGGT+AGG | 0.638317 | 1.4:+75072134 | MS.gene33952:intron |
| TTACATCGTCGAAGAATCGA+GGG | 0.640120 | 1.4:+75067112 | MS.gene33952:CDS |
| CAGTTCTCCTAAGACTGACA+AGG | 0.642066 | 1.4:+75070076 | MS.gene33952:CDS |
| ATCCGTGGCAGCATTAGCAA+GGG | 0.649080 | 1.4:+75071877 | MS.gene33952:CDS |
| ATTCTGTCAACTCATGCTTG+AGG | 0.649607 | 1.4:+75080994 | MS.gene33952:CDS |
| ATGGAATGTGTTGATCCACT+AGG | 0.649820 | 1.4:+75069867 | MS.gene33952:CDS |
| TCTTGTAAAACCACAATCGA+CGG | 0.650818 | 1.4:+75071352 | MS.gene33952:CDS |
| TTGAATTCTGGCATTCAATG+GGG | 0.654428 | 1.4:+75079581 | MS.gene33952:CDS |
| AAGTTTAAGAAAACGAACCC+GGG | 0.660220 | 1.4:+75081263 | MS.gene33952:CDS |
| GCTTCGATCCTTAAGGAGTG+AGG | 0.661393 | 1.4:+75076995 | MS.gene33952:CDS |
| GAGCAGTGTACATTAGACCA+CGG | 0.672896 | 1.4:+75073608 | MS.gene33952:CDS |
| AACCTACCAAGTACTATCCG+TGG | 0.673497 | 1.4:+75071862 | MS.gene33952:CDS |
| TACAAGTGCTGCTGACCTGG+AGG | 0.675876 | 1.4:+75071243 | MS.gene33952:CDS |
| TCACAGAATCAGAGAATACG+TGG | 0.678297 | 1.4:+75073578 | MS.gene33952:intron |
| GAAGCATGTTGATGAAGCTG+AGG | 0.682725 | 1.4:+75067197 | MS.gene33952:CDS |
| GAGATGCTTAGTATTTCTAG+CGG | 0.697331 | 1.4:+75067063 | MS.gene33952:CDS |
| CATCACTCATGTAGGACCGG+AGG | 0.702712 | 1.4:-75075595 | None:intergenic |
| TACTTACAGTCATTCCCTCG+TGG | 0.703042 | 1.4:+75069843 | MS.gene33952:CDS |
| TCAACACATTCCATGCCACG+AGG | 0.705544 | 1.4:-75069858 | None:intergenic |
| TATCAACAACTCCTATCCTG+CGG | 0.706573 | 1.4:+75073807 | MS.gene33952:CDS |
| TAATTGATACCTGCAACCGG+AGG | 0.710536 | 1.4:-75075671 | None:intergenic |
| TGCCACGGATAGTACTTGGT+AGG | 0.711375 | 1.4:-75071864 | None:intergenic |
| GGAGTGGAAGAACTCCGGCG+AGG | 0.715263 | 1.4:+75067133 | MS.gene33952:CDS |
| GCAACTCTACTGCTGCATCG+CGG | 0.727604 | 1.4:-75079762 | None:intergenic |
| CGTTTCGGTTGAAACGACGG+CGG | 0.729375 | 1.4:-75066967 | None:intergenic |
| TATTGTGCTGCATATCATTG+CGG | 0.729492 | 1.4:-75074377 | None:intergenic |
| CAACACATTCCATGCCACGA+GGG | 0.730428 | 1.4:-75069857 | None:intergenic |
| TTTCGTTTGAGGTTTCGCGG+TGG | 0.749694 | 1.4:-75067004 | None:intergenic |
| GACGCTGATAGCAACCTACG+TGG | 0.752006 | 1.4:+75070098 | MS.gene33952:CDS |
| AGCTTGTCAAGTGACAACCC+GGG | 0.756322 | 1.4:-75081280 | None:intergenic |
| TTGCTGAAGATACAGCTGAG+CGG | 0.772135 | 1.4:-75075930 | None:intergenic |
| TATATGATGGATGATTACAG+CGG | 0.782568 | 1.4:-75073902 | None:intergenic |
| TGTAGCTTGAGAATACAGTG+AGG | 0.785722 | 1.4:+75072946 | MS.gene33952:intron |
| GCAGTGTACATTAGACCACG+GGG | 0.811185 | 1.4:+75073610 | MS.gene33952:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 75066844 | 75081287 | 75066844 | ID=MS.gene33952 |
| chr1.4 | mRNA | 75066844 | 75081287 | 75066844 | ID=MS.gene33952.t1;Parent=MS.gene33952 |
| chr1.4 | exon | 75066844 | 75067218 | 75066844 | ID=MS.gene33952.t1.exon1;Parent=MS.gene33952.t1 |
| chr1.4 | CDS | 75066844 | 75067218 | 75066844 | ID=cds.MS.gene33952.t1;Parent=MS.gene33952.t1 |
| chr1.4 | exon | 75069726 | 75069895 | 75069726 | ID=MS.gene33952.t1.exon2;Parent=MS.gene33952.t1 |
| chr1.4 | CDS | 75069726 | 75069895 | 75069726 | ID=cds.MS.gene33952.t1;Parent=MS.gene33952.t1 |
| chr1.4 | exon | 75070031 | 75070119 | 75070031 | ID=MS.gene33952.t1.exon3;Parent=MS.gene33952.t1 |
| chr1.4 | CDS | 75070031 | 75070119 | 75070031 | ID=cds.MS.gene33952.t1;Parent=MS.gene33952.t1 |
| chr1.4 | exon | 75071179 | 75071373 | 75071179 | ID=MS.gene33952.t1.exon4;Parent=MS.gene33952.t1 |
| chr1.4 | CDS | 75071179 | 75071373 | 75071179 | ID=cds.MS.gene33952.t1;Parent=MS.gene33952.t1 |
| chr1.4 | exon | 75071582 | 75071709 | 75071582 | ID=MS.gene33952.t1.exon5;Parent=MS.gene33952.t1 |
| chr1.4 | CDS | 75071582 | 75071709 | 75071582 | ID=cds.MS.gene33952.t1;Parent=MS.gene33952.t1 |
| chr1.4 | exon | 75071802 | 75071960 | 75071802 | ID=MS.gene33952.t1.exon6;Parent=MS.gene33952.t1 |
| chr1.4 | CDS | 75071802 | 75071960 | 75071802 | ID=cds.MS.gene33952.t1;Parent=MS.gene33952.t1 |
| chr1.4 | exon | 75072146 | 75072256 | 75072146 | ID=MS.gene33952.t1.exon7;Parent=MS.gene33952.t1 |
| chr1.4 | CDS | 75072146 | 75072256 | 75072146 | ID=cds.MS.gene33952.t1;Parent=MS.gene33952.t1 |
| chr1.4 | exon | 75072951 | 75073025 | 75072951 | ID=MS.gene33952.t1.exon8;Parent=MS.gene33952.t1 |
| chr1.4 | CDS | 75072951 | 75073025 | 75072951 | ID=cds.MS.gene33952.t1;Parent=MS.gene33952.t1 |
| chr1.4 | exon | 75073584 | 75073721 | 75073584 | ID=MS.gene33952.t1.exon9;Parent=MS.gene33952.t1 |
| chr1.4 | CDS | 75073584 | 75073721 | 75073584 | ID=cds.MS.gene33952.t1;Parent=MS.gene33952.t1 |
| chr1.4 | exon | 75073802 | 75073975 | 75073802 | ID=MS.gene33952.t1.exon10;Parent=MS.gene33952.t1 |
| chr1.4 | CDS | 75073802 | 75073975 | 75073802 | ID=cds.MS.gene33952.t1;Parent=MS.gene33952.t1 |
| chr1.4 | exon | 75074274 | 75074417 | 75074274 | ID=MS.gene33952.t1.exon11;Parent=MS.gene33952.t1 |
| chr1.4 | CDS | 75074274 | 75074417 | 75074274 | ID=cds.MS.gene33952.t1;Parent=MS.gene33952.t1 |
| chr1.4 | exon | 75075557 | 75075683 | 75075557 | ID=MS.gene33952.t1.exon12;Parent=MS.gene33952.t1 |
| chr1.4 | CDS | 75075557 | 75075683 | 75075557 | ID=cds.MS.gene33952.t1;Parent=MS.gene33952.t1 |
| chr1.4 | exon | 75075758 | 75075968 | 75075758 | ID=MS.gene33952.t1.exon13;Parent=MS.gene33952.t1 |
| chr1.4 | CDS | 75075758 | 75075968 | 75075758 | ID=cds.MS.gene33952.t1;Parent=MS.gene33952.t1 |
| chr1.4 | exon | 75076992 | 75077107 | 75076992 | ID=MS.gene33952.t1.exon14;Parent=MS.gene33952.t1 |
| chr1.4 | CDS | 75076992 | 75077107 | 75076992 | ID=cds.MS.gene33952.t1;Parent=MS.gene33952.t1 |
| chr1.4 | exon | 75077259 | 75077493 | 75077259 | ID=MS.gene33952.t1.exon15;Parent=MS.gene33952.t1 |
| chr1.4 | CDS | 75077259 | 75077493 | 75077259 | ID=cds.MS.gene33952.t1;Parent=MS.gene33952.t1 |
| chr1.4 | exon | 75078824 | 75078917 | 75078824 | ID=MS.gene33952.t1.exon16;Parent=MS.gene33952.t1 |
| chr1.4 | CDS | 75078824 | 75078917 | 75078824 | ID=cds.MS.gene33952.t1;Parent=MS.gene33952.t1 |
| chr1.4 | exon | 75079545 | 75079622 | 75079545 | ID=MS.gene33952.t1.exon17;Parent=MS.gene33952.t1 |
| chr1.4 | CDS | 75079545 | 75079622 | 75079545 | ID=cds.MS.gene33952.t1;Parent=MS.gene33952.t1 |
| chr1.4 | exon | 75079757 | 75079813 | 75079757 | ID=MS.gene33952.t1.exon18;Parent=MS.gene33952.t1 |
| chr1.4 | CDS | 75079757 | 75079813 | 75079757 | ID=cds.MS.gene33952.t1;Parent=MS.gene33952.t1 |
| chr1.4 | exon | 75080866 | 75081019 | 75080866 | ID=MS.gene33952.t1.exon19;Parent=MS.gene33952.t1 |
| chr1.4 | CDS | 75080866 | 75081019 | 75080866 | ID=cds.MS.gene33952.t1;Parent=MS.gene33952.t1 |
| chr1.4 | exon | 75081214 | 75081287 | 75081214 | ID=MS.gene33952.t1.exon20;Parent=MS.gene33952.t1 |
| chr1.4 | CDS | 75081214 | 75081287 | 75081214 | ID=cds.MS.gene33952.t1;Parent=MS.gene33952.t1 |
| Gene Sequence |
| Protein sequence |
